PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1D06 10926518 STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION 1999-09-09 2000-03-15 Miyatake, H.,Mukai, M.,Park, S.-Y.,Adachi, S.,Tamura, K.,Nakamura, H.,Nakamura, K.,Tsuchiya, T.,Iizuka, T.,Shiro, Y. Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies J.MOL.BIOL. 2000 301 415 431 1CL6 10671516 CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE 1999-05-06 2000-03-22 Shimizu, H.,Obayashi, E.,Gomi, Y.,Arakawa, H.,Park, S.Y.,Nakamura, H.,Adachi, S.,Shoun, H.,Shiro, Y. Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes. J.Biol.Chem. 2000 275 4816 4826 1CMJ 10671516 CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE 1999-05-07 2000-03-22 Shimizu, H.,Obayashi, E.,Gomi, Y.,Arakawa, H.,Park, S.Y.,Nakamura, H.,Adachi, S.,Shoun, H.,Shiro, Y. Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes. J.Biol.Chem. 2000 275 4816 4826 1CMN 10671516 CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE 1999-05-07 2000-03-22 Shimizu, H.,Obayashi, E.,Gomi, Y.,Arakawa, H.,Park, S.Y.,Nakamura, H.,Adachi, S.,Shoun, H.,Shiro, Y. Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes. J.Biol.Chem. 2000 275 4816 4826 1EW0 10926518 CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM) 2000-04-21 2000-05-10 Miyatake, H.,Mukai, M.,Park, S.-Y.,Adachi, S.,Tamura, K.,Nakamura, H.,Nakamura, K.,Tsuchiya, T.,Iizuka, T.,Shiro, Y. Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies J.MOL.BIOL. 2000 301 415 431 1DZE 15328615 Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K 2000-02-25 2000-08-16 Takeda, K.,Matsui, Y.,Kamiya, N.,Adachi, S.,Okumura, H.,Kouyama, T. Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix J.Mol.Biol. 2004 341 1023 0 1QM8 Structure of Bacteriorhodopsin at 100 K 1999-09-22 2000-08-16 Takeda, K.,Sato, H.,Hino, T.,Kono, M.,Fukuda, K.,Sakurai, I.,Okada, T.,Kouyama, T. A Novel Three-Dimensional Crystal of Bacteriorhodopsin Obtained by Successive Fusion of the Vesicular Assemblies. J.Mol.Biol. 1998 283 463 0 1EHE 11051564 CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S 2000-02-21 2000-08-21 Shimizu, H.,Park, S.,Lee, D.,Shoun, H.,Shiro, Y. Crystal structures of cytochrome P450nor and its mutants (Ser286-->Val, Thr) in the ferric resting state at cryogenic temperature: a comparative analysis with monooxygenase cytochrome P450s. J.Inorg.Biochem. 2000 81 191 205 1EHF 11051564 CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S 2000-02-21 2000-08-21 Shimizu, H.,Park, S.,Lee, D.,Shoun, H.,Shiro, Y. Crystal structures of cytochrome P450nor and its mutants (Ser286-->Val, Thr) in the ferric resting state at cryogenic temperature: a comparative analysis with monooxygenase cytochrome P450s. J.Inorg.Biochem. 2000 81 191 205 1EHG 11051564 CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S 2000-02-21 2000-08-21 Shimizu, H.,Park, S.,Lee, D.,Shoun, H.,Shiro, Y. Crystal structures of cytochrome P450nor and its mutants (Ser286-->Val, Thr) in the ferric resting state at cryogenic temperature: a comparative analysis with monooxygenase cytochrome P450s. J.Inorg.Biochem. 2000 81 191 205 1GCV 11243818 DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS 2000-08-08 2000-08-31 Naoi, Y.,Chong, K.T.,Yoshimatsu, K.,Miyazaki, G.,Tame, J.R.,Park, S.Y.,Adachi, S.,Morimoto, H. The functional similarity and structural diversity of human and cartilaginous fish hemoglobins. J.Mol.Biol. 2001 307 259 270 1GEB 11098139 X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM 2000-11-01 2000-11-15 Hishiki, T.,Shimada, H.,Nagano, S.,Egawa, T.,Kanamori, Y.,Makino, R.,Park, S.Y.,Adachi, S.,Shiro, Y.,Ishimura, Y. X-ray crystal structure and catalytic properties of Thr252Ile mutant of cytochrome P450cam: roles of Thr252 and water in the active center. J.Biochem. 2000 128 965 974 1GED 11076941 A positive charge route for the access of nadh to heme formed in the distal heme pocket of cytochrome p450nor 2000-11-02 2000-11-22 Kudo, T.,Takaya, N.,Park, S.-Y.,Shiro, Y.,Shoun, H. A positively charged cluster formed in the heme-distal pocket of cytochrome P450nor is essential for interaction with NADH J.Biol.Chem. 2001 276 5020 5026 1F24 11132616 CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR 2000-05-23 2000-11-23 Obayashi, E.,Shimizu, H.,Park, S.Y.,Shoun, H.,Shiro, Y. Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function. J.Inorg.Biochem. 2000 82 103 111 1F25 11132616 CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR 2000-05-23 2000-11-23 Obayashi, E.,Shimizu, H.,Park, S.Y.,Shoun, H.,Shiro, Y. Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function. J.Inorg.Biochem. 2000 82 103 111 1F26 11132616 CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR 2000-05-23 2000-11-23 Obayashi, E.,Shimizu, H.,Park, S.Y.,Shoun, H.,Shiro, Y. Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function. J.Inorg.Biochem. 2000 82 103 111 1GEI 11258878 STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM 2000-11-13 2000-11-29 Lee, D.S.,Park, S.Y.,Yamane, K.,Obayashi, E.,Hori, H.,Shiro, Y. Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam. Biochemistry 2001 40 2669 2677 1GEJ 11258878 STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM 2000-11-13 2000-12-06 Lee, D.S.,Park, S.Y.,Yamane, K.,Obayashi, E.,Hori, H.,Shiro, Y. Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam. Biochemistry 2001 40 2669 2677 1GEK 11258878 STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM 2000-11-13 2000-12-06 Lee, D.S.,Park, S.Y.,Yamane, K.,Obayashi, E.,Hori, H.,Shiro, Y. Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam. Biochemistry 2001 40 2669 2677 1GEM 11258878 STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM 2000-11-13 2000-12-06 Lee, D.S.,Park, S.Y.,Yamane, K.,Obayashi, E.,Hori, H.,Shiro, Y. Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam. Biochemistry 2001 40 2669 2677 1EEX 10903944 CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA 2000-02-04 2001-02-07 Masuda, J.,Shibata, N.,Morimoto, Y.,Toraya, T.,Yasuoka, N. How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des. 2000 8 775 788 1EEX 10903944 CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA 2000-02-04 2001-02-07 Masuda, J.,Shibata, N.,Morimoto, Y.,Toraya, T.,Yasuoka, N. How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des. 2000 8 775 788 1GCU 11224565 CRYSTAL STRUCTURE OF RAT BILIVERDIN REDUCTASE AT 1.4 A 2000-08-08 2001-02-08 Kikuchi, A.,Park, S.Y.,Miyatake, H.,Sun, D.,Sato, M.,Yoshida, T.,Shiro, Y. Crystal structure of rat biliverdin reductase. Nat.Struct.Biol. 2001 8 221 225 1EGV 10903944 CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION. 2000-02-17 2001-02-21 Masuda, J.,Shibata, N.,Morimoto, Y.,Toraya, T.,Yasuoka, N. How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des. 2000 8 775 788 1IO7 12237217 THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES 2001-02-08 2001-02-28 Park, S.Y.,Yamane, K.,Adachi, S.,Shiro, Y.,Weiss, K.E.,Maves, S.A.,Sligar, S.G. Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties. J.Inorg.Biochem. 2002 91 491 501 1IO8 12237217 Thermophilic cytochrome P450 (CYP119) from sulfolobus solfataricus: High resolution structural origin of its thermostability and functional properties 2001-02-08 2001-03-07 Park, S.Y.,Yamane, K.,Adachi, S.,Shiro, Y.,Weiss, K.E.,Maves, S.A.,Sligar, S.G. Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties J.Inorg.Biochem. 2002 91 491 501 1IO9 12237217 THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES 2001-02-08 2001-03-07 Park, S.Y.,Yamane, K.,Adachi, S.,Shiro, Y.,Weiss, K.E.,Maves, S.A.,Sligar, S.G. Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties. J.Inorg.Biochem. 2002 91 491 501 1GDV 11092924 CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION 2000-10-06 2001-04-06 Yamada, S.,Park, S.Y.,Shimizu, H.,Koshizuka, Y.,Kadokura, K.,Satoh, T.,Suruga, K.,Ogawa, M.,Isogai, Y.,Nishio, T.,Shiro, Y.,Oku, T. Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution. Acta Crystallogr.,Sect.D 2000 56 1577 1582 1EUZ 11258921 GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE 2000-04-19 2001-04-25 Nakasako, M.,Fujisawa, T.,Adachi, S.,Kudo, T.,Higuchi, S. Large-scale domain movements and hydration structure changes in the active-site cleft of unligated glutamate dehydrogenase from Thermococcus profundus studied by cryogenic X-ray crystal structure analysis and small-angle X-ray scattering. Biochemistry 2001 40 3069 3079 1IQ4 11350033 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS 2001-06-13 2001-06-27 Nakashima, T.,Yao, M.,Kawamura, S.,Iwasaki, K.,Kimura, M.,Tanaka, I. Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding. RNA 2001 7 692 701 1GD7 11157762 CRYSTAL STRUCTURE OF A BIFUNCTIONAL PROTEIN (CSAA) WITH EXPORT-RELATED CHAPERONE AND TRNA-BINDING ACTIVITIES. 2000-09-22 2001-09-22 Kawaguchi, S.,Muller, J.,Linde, D.,Kuramitsu, S.,Shibata, T.,Inoue, Y.,Vassylyev, D.G.,Yokoyama, S. The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus. EMBO J. 2001 20 562 569 1GD8 THE CRYSTAL STRUCTURE OF BACTERIA-SPECIFIC L17 RIBOSOMAL PROTEIN. 2000-09-22 2001-09-22 Vassylyev, D.G.,Shirouzu, M.,Wada, T.,Yokoyama, S. The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus. To be Published 0 0 0 0 1IOZ 12836672 Crystal Structure of the C-HA-RAS Protein Prepared by the Cell-Free Synthesis 2001-04-18 2001-10-03 Kigawa, T.,Yamaguchi-Nunokawa, E.,Kodama, K.,Matsuda, T.,Yabuki, T.,Matsuda, N.,Ishitani, R.,Nureki, O.,Yokoyama, S. Selenomethionine incorporation into a protein by cell-free synthesis J.STRUCT.FUNCT.GENOM. 2001 2 29 35 1IRD Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution 2001-09-27 2001-10-17 Park, S.-Y.,Tame, J.R.H. Carbonmonoxy-Haemoglobin at 1.25 A Resolution To be Published 0 0 0 0 1IQR 11707580 Crystal structure of DNA photolyase from Thermus thermophilus 2001-07-27 2001-11-28 Komori, H.,Masui, R.,Kuramitsu, S.,Yokoyama, S.,Shibata, T.,Inoue, Y.,Miki, K. Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA 2001 98 13560 13565 1HZD 11738050 CRYSTAL STRUCTURE OF HUMAN AUH PROTEIN, AN RNA-BINDING HOMOLOGUE OF ENOYL-COA HYDRATASE 2001-01-24 2001-12-12 Kurimoto, K.,Fukai, S.,Nureki, O.,Muto, Y.,Yokoyama, S. Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase. Structure 2001 9 1253 1263 1JFB 11752781 X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferric resting state at atomic resolution 2001-06-20 2001-12-20 Shimizu, H.,Park, S.Y.,Shiro, Y.,Adachi, S. X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution. Acta Crystallogr.,Sect.D 2002 58 81 89 1JFC 11752781 X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution 2001-06-20 2001-12-20 Shimizu, H.,Park, S.Y.,Shiro, Y.,Adachi, S. X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution. Acta Crystallogr.,Sect.D 2002 58 81 89 1HLV 11726497 CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA 2000-12-04 2002-01-11 Tanaka, Y.,Nureki, O.,Kurumizaka, H.,Fukai, S.,Kawaguchi, S.,Ikuta, M.,Iwahara, J.,Okazaki, T.,Yokoyama, S. Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA. EMBO J. 2001 20 6612 6618 1IT2 11923284 Hagfish deoxy hemoglobin 2002-01-05 2002-01-23 Mito, M.,Chong, K.T.,Miyazaki, G.,Adachi, S.,Park, S.-Y.,Tame, J.R.,Morimoto, H. Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri J.Biol.Chem. 2002 277 21898 21905 1IT3 11923284 Hagfish CO ligand hemoglobin 2002-01-05 2002-01-23 Mito, M.,Chong, K.T.,Miyazaki, G.,Adachi, S.,Park, S.-Y.,Tame, J.R.,Morimoto, H. Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri J.Biol.Chem. 2002 277 21898 21905 1EIC 11742124 CRYSTAL STRUCTURE OF F120A MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A 2000-02-25 2002-02-13 Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T. Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution. Protein Sci. 2002 11 72 81 1EIE 11742124 CRYSTAL STRUCTURE OF F120W MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A 2000-02-25 2002-02-13 Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T. Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution. Protein Sci. 2002 11 72 81 1IRJ 11851337 Crystal Structure of the MRP14 complexed with CHAPS 2001-10-09 2002-02-27 Itou, H.,Yao, M.,Fujita, I.,Watanabe, N.,Suzuki, M.,Nishihira, J.,Tanaka, I. The crystal structure of human MRP14 (S100A9), a Ca(2+)-dependent regulator protein in inflammatory process. J.Mol.Biol. 2002 316 265 276 1KH2 11844799 Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with ATP 2001-11-29 2002-04-03 Goto, M.,Nakajima, Y.,Hirotsu, K. Crystal structure of argininosuccinate synthetase from Thermus thermophilus HB8. Structural basis for the catalytic action. J.Biol.Chem. 2002 277 15890 15896 1KOR 11844799 Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with inhibitors 2001-12-22 2002-04-03 Goto, M.,Nakajima, Y.,Hirotsu, K. Crystal structure of argininosuccinate synthetase from Thermus thermophilus HB8. Structural basis for the catalytic action. J.Biol.Chem. 2002 277 15890 15896 1IQU 11707580 Crystal structure of photolyase-thymine complex 2001-08-03 2002-05-08 Komori, H.,Masui, R.,Kuramitsu, S.,Yokoyama, S.,Shibata, T.,Inoue, Y.,Miki, K. Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA 2001 98 13560 13565 1IT6 12015153 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN CALYCULIN A AND THE CATALYTIC SUBUNIT OF PROTEIN PHOSPHATASE 1 2002-01-09 2002-05-22 Kita, A.,Matsunaga, S.,Takai, A.,Kataiwa, H.,Wakimoto, T.,Fusetani, N.,Isobe, M.,Miki, K. Crystal structure of the complex between calyculin A and the catalytic subunit of protein phosphatase 1. Structure 2002 10 715 724 1IWI 14661963 Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Cytochrome P450cam 2002-05-15 2002-06-05 Nagano, S.,Shimada, H.,Tarumi, A.,Hishiki, T.,Kimata-Ariga, Y.,Egawa, T.,Suematsu, M.,Park, S.-Y.,Adachi, S.,Shiro, Y.,Ishimura, Y. Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam Biochemistry 2003 42 14507 14514 1IWJ 14661963 Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(109K) Cytochrome P450cam 2002-05-15 2002-06-05 Nagano, S.,Shimada, H.,Tarumi, A.,Hishiki, T.,Kimata-Ariga, Y.,Egawa, T.,Suematsu, M.,Park, S.-Y.,Adachi, S.,Shiro, Y.,Ishimura, Y. Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam Biochemistry 2003 42 14507 14514 1IWK 14661963 Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(112K) Cytochrome P450cam 2002-05-15 2002-06-05 Nagano, S.,Shimada, H.,Tarumi, A.,Hishiki, T.,Kimata-Ariga, Y.,Egawa, T.,Suematsu, M.,Park, S.-Y.,Adachi, S.,Shiro, Y.,Ishimura, Y. Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam Biochemistry 2003 42 14507 14514 1JFL 12051922 CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA 2001-06-21 2002-06-05 Liu, L.,Iwata, K.,Kita, A.,Kawarabayasi, Y.,Yohda, M.,Miki, K. Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization. J.Mol.Biol. 2002 319 479 489 1K5C 12022868 Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution 2001-10-10 2002-06-05 Shimizu, T.,Nakatsu, T.,Miyairi, K.,Okuno, T.,Kato, H. Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution. Biochemistry 2002 41 6651 6659 1KCC 12022868 Endopolygalacturonase I from Stereum purpureum complexed with a galacturonate at 1.00 A resolution. 2001-11-08 2002-06-05 Shimizu, T.,Nakatsu, T.,Miyairi, K.,Okuno, T.,Kato, H. Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution. Biochemistry 2002 41 6651 6659 1KCD 12022868 Endopolygalacturonase I from Stereum purpureum complexed with two galacturonate at 1.15 A resolution. 2001-11-08 2002-06-05 Shimizu, T.,Nakatsu, T.,Miyairi, K.,Okuno, T.,Kato, H. Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution. Biochemistry 2002 41 6651 6659 1IPA 12077432 CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE 2001-05-02 2002-07-10 Nureki, O.,Shirouzu, M.,Hashimoto, K.,Ishitani, R.,Terada, T.,Tamakoshi, M.,Oshima, T.,Chijimatsu, M.,Takio, K.,Vassylyev, D.G.,Shibata, T.,Inoue, Y.,Kuramitsu, S.,Yokoyama, S. An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr.,Sect.D 2002 58 1129 1137 1IVV 12134140 Crystal structure of copper amine oxidase from Arthrobacter globiformis: Early intermediate in topaquinone biogenesis 2002-03-29 2002-08-07 Kim, M.,Okajima, T.,Kishishita, S.,Yoshimura, M.,Kawamori, A.,Tanizawa, K.,Yamaguchi, H. X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase. 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Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. Acta Crystallogr.,Sect.D 2003 59 23 31 1IV2 12499535 Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP) 2002-03-11 2002-09-11 Kishida, H.,Wada, T.,Unzai, S.,Kuzuyama, T.,Takagi, M.,Terada, T.,Shirouzu, M.,Yokoyama, S.,Tame, J.R.,Park, S.Y. Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. Acta Crystallogr.,Sect.D 2003 59 23 31 1IV3 12499535 Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms) 2002-03-11 2002-09-11 Kishida, H.,Wada, T.,Unzai, S.,Kuzuyama, T.,Takagi, M.,Terada, T.,Shirouzu, M.,Yokoyama, S.,Tame, J.R.,Park, S.Y. 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X-ray crystallographic studies of archaerhodopsin J.Photosci. 2003 9 320 322 1UB7 The Crystal Analysis of Beta-Keroacyl-[Acyl Carrier Protein] Synthase III (FABH)From Thermus Thermophilus. 2003-03-31 2003-04-15 Inagaki, E.,Kuramitsu, S.,Yokoyama, S.,Miyano, M.,Tahirov, T.H. The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) from Thermus Thermophilus To be Published 0 0 0 0 1J1Z 12684518 Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with substrate 2002-12-24 2003-04-22 Goto, M.,Omi, R.,Miyahara, I.,Sugahara, M.,Hirotsu, K. Structures of argininosuccinate synthetase in enzyme-ATP-substrates and enzyme-AMP-product forms J.Biol.Chem. 2003 278 22964 22971 1J20 12684518 Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with product 2002-12-24 2003-04-22 Goto, M.,Omi, R.,Miyahara, I.,Sugahara, M.,Hirotsu, K. 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Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity Biochem.Biophys.Res.Commun. 2000 275 572 576 1UCC 10964705 Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP. 2003-04-10 2003-04-29 Suzuki, A.,Yao, M.,Tanaka, I.,Numata, T.,Kikukawa, S.,Yamasaki, N.,Kimura, M. Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity Biochem.Biophys.Res.Commun. 2000 275 572 576 1J1F 12731868 Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP 2002-12-03 2003-05-20 Numata, T.,Suzuki, A.,Kakuta, Y.,Kimura, K.,Yao, M.,Tanaka, I.,Yoshida, Y.,Ueda, T.,Kimura, M. 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Acta Crystallogr.,Sect.D 2003 59 1213 1218 1IWL 12839983 Crystal Structure of the Lipoprotein Localization Factor, LolA 2002-05-17 2003-07-15 Takeda, K.,Miyatake, H.,Yokota, N.,Matsuyama, S.,Tokuda, H.,Miki, K. Crystal structures of bacterial lipoprotein localization factors, LolA and LolB Embo J. 2003 22 3199 3209 1IWN 12839983 Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with PEGMME2000 2002-05-17 2003-07-15 Takeda, K.,Miyatake, H.,Yokota, N.,Matsuyama, S.,Tokuda, H.,Miki, K. Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. Embo J. 2003 22 3199 3209 1J3Y 12773618 Direct observation of photolysis-induced tertiary structural changes in human hemoglobin; Crystal structure of alpha(Fe)-beta(Ni) hemoglobin (laser photolysed) 2003-02-21 2003-07-22 Adachi, S.,Park, S.-Y.,Tame, J.R.H.,Shiro, Y.,Shibayama, N. 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Biophys Physicobio. 2015 12 47 56 1UAN 12876312 Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8 2003-03-12 2003-08-05 Handa, N.,Terada, T.,Kamewari, Y.,Hamana, H.,Tame, J.R.H.,Park, S.-Y.,Kinoshita, K.,Ota, M.,Nakamura, H.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8 PROTEIN SCI. 2003 12 1621 1632 1UIY 33949975 Crystal Structure of Enoyl-CoA Hydratase from Thermus Thermophilus HB8 2003-07-24 2003-08-05 Padavattan, S.,Jos, S.,Gogoi, H.,Bagautdinov, B. Crystal structure of enoyl-CoA hydratase from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F 2021 77 148 155 1UIW 15236579 Crystal Structures of Unliganded and Half-Liganded Human Hemoglobin Derivatives Cross-Linked between Lys 82beta1 and Lys 82beta2 2003-07-23 2003-08-12 Park, S.-Y.,Shibayama, N.,Hiraki, T.,Tame, J.R.H. Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between Lys 82beta1 and Lys 82beta2 Biochemistry 2004 43 8711 8717 1ONL 12925792 Crystal structure of Thermus thermophilus HB8 H-protein of the glycine cleavage system 2003-02-28 2003-08-26 Nakai, T.,Ishijima, J.,Masui, R.,Kuramitsu, S.,Kamiya, N. Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method. Acta Crystallogr.,Sect.D 2003 59 1610 1618 1IU9 12297289 Crystal structure of the C-terminal domain of aspartate racemase from Pyrococcus horikoshii OT3 2002-02-28 2003-09-09 Liu, L.,Iwata, K.,Yohda, M.,Miki, K. Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases FEBS LETT. 2002 528 114 118 1IUJ 15103643 The structure of TT1380 protein from thermus thermophilus 2002-03-05 2003-09-09 Wada, T.,Shirouzu, M.,Terada, T.,Kamewari, Y.,Park, S.-Y.,Tame, J.R.H.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8 Proteins 2004 55 778 780 1UC9 12963379 Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8 2003-04-09 2003-09-23 Sakai, H.,Vassylyeva, M.N.,Matsuura, T.,Sekine, S.,Gotoh, K.,Nishiyama, M.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Vassylyev, D.G.,Yokoyama, S. Crystal Structure of a Lysine Biosynthesis Enzyme, LysX, from Thermus thermophilus HB8 J.Mol.Biol. 2003 332 729 740 1UCR 12962631 Three-dimensional crystal structure of dissimilatory sulfite reductase D (DsrD) 2003-04-18 2003-10-14 Mizuno, N.,Voordouw, G.,Miki, K.,Sarai, A.,Higuchi, Y. Crystal Structure of Dissimilatory Sulfite Reductase D (DsrD) Protein-Possible Interaction with B- and Z-DNA by Its Winged-Helix Motif STRUCTURE 2003 11 1133 1140 1J0O 14581238 High Resolution Crystal Structure of the wild type Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F 2002-11-19 2003-11-19 Ozawa, K.,Takayama, Y.,Yasukawa, F.,Ohmura, T.,Cusanovich, M.A.,Tomimoto, Y.,Ogata, H.,Higuchi, Y.,Akutsu, H. Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F. Biophys.J. 2003 85 3367 3374 1J0P 14581238 Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F 2002-11-19 2003-11-19 Ozawa, K.,Takayama, Y.,Yasukawa, F.,Ohmura, T.,Cusanovich, M.A.,Tomimoto, Y.,Ogata, H.,Higuchi, Y.,Akutsu, H. Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F. Biophys.J. 2003 85 3367 3374 1UF3 Crystal structure of TT1561 of thermus thermophilus HB8 2003-05-23 2003-11-23 Kato-Murayama, M.,Shirouzu, M.,Terada, T.,Murayama, K.,Kuramitsu, S.,Yokoyama, S. Crystal structure of TT1561 of thermus thermophilus HB8 To be Published 0 0 0 0 1IZP 12962489 F46L mutant of bovine pancreatic ribonuclease A 2002-10-11 2003-11-25 Kadonosono, T.,Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T. Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A Biochemistry 2003 42 10651 10658 1IZQ 12962489 F46V mutant of bovine pancreatic ribonuclease A 2002-10-11 2003-11-25 Kadonosono, T.,Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T. Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A Biochemistry 2003 42 10651 10658 1UF9 15526298 Crystal structure of TT1252 from Thermus thermophilus 2003-05-28 2003-11-28 Seto, A.,Murayama, K.,Toyama, M.,Ebihara, A.,Nakagawa, N.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8 PROTEINS 2005 58 235 242 1UFA Crystal structure of TT1467 from Thermus thermophilus HB8 2003-05-28 2003-11-28 Idaka, M.,Terada, T.,Murayama, K.,Yamaguchi, H.,Nureki, O.,Ishitani, R.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of TT1467 from Thermus thermophilus HB8 To be published 0 0 0 0 1UFB Crystal structure of TT1696 from Thermus thermophilus HB8 2003-05-28 2003-11-28 Idaka, M.,Murayama, K.,Yamaguchi, H.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of TT1696 from Thermus thermophilus HB8 To be published 0 0 0 0 1UFK Crystal structure of TT0836 2003-05-31 2003-11-30 Kaminishi, T.,Sakai, H.,Takemoto-Hori, C.,Terada, T.,Nakagawa, N.,Maoka, N.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of TT0836 To be Published 0 0 0 0 1UFL 15629661 Crystal Structure of TT1020 from Thermus thermophilus HB8 2003-05-31 2003-11-30 Sakai, H.,Wang, H.,Takemoto-Hori, C.,Kaminishi, T.,Yamaguchi, H.,Kamewari, Y.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J.Struct.Biol. 2005 149 99 110 1J27 14579367 Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7A resolution 2002-12-26 2003-12-02 Seto, A.,Shirouzu, M.,Terada, T.,Murayama, K.,Kuramitsu, S.,Yokoyama, S. Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution Proteins 2003 53 768 771 1UFO 15648092 Crystal Structure of TT1662 from Thermus thermophilus 2003-06-03 2003-12-03 Murayama, K.,Shirouzu, M.,Terada, T.,Kuramitsu, S.,Yokoyama, S. Crystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes. Proteins 2005 58 982 984 1J1L 14573596 Crystal structure of human Pirin: a Bcl-3 and Nuclear factor I interacting protein and a cupin superfamily member 2002-12-10 2003-12-16 Pang, H.,Bartlam, M.,Zeng, Q.,Miyatake, H.,Hisano, T.,Miki, K.,Wong, L.L.,Gao, G.F.,Rao, Z. Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor J.Biol.Chem. 2004 279 1491 1498 1IW9 15328615 Crystal Structure of the M Intermediate of Bacteriorhodopsin 2002-04-25 2003-12-23 Takeda, K.,Matsui, Y.,Kamiya, N.,Adachi, S.,Okumura, H.,Kouyama, T. Crystal structure of the M intermediate of bacteriorhodopsin: allosteric structural changes mediated by sliding movement of a transmembrane helix J.Mol.Biol. 2004 341 1023 1037 1Q3R 14729342 Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant) 2003-07-31 2004-01-27 Shomura, Y.,Yoshida, T.,Iizuka, R.,Maruyama, T.,Yohda, M.,Miki, K. Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol. 2004 335 1265 1278 1J1M Ricin A-Chain (Recombinant) at 100K 2002-12-10 2004-02-03 Watanabe, K.,Motoshima, H. Ricin A-Chain (Recombinant) at 100K To be published 0 0 0 0 1UIU 12960164 Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel unliganded form) 2003-07-22 2004-02-03 Heddle, J.,Scott, D.J.,Unzai, S.,Park, S.-Y.,Tame, J.R.H. Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli J.Biol.Chem. 2003 278 50322 50329 1UIV 12960164 Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel liganded form) 2003-07-22 2004-02-03 Heddle, J.,Scott, D.J.,Unzai, S.,Park, S.-Y.,Tame, J.R.H. Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli J.Biol.Chem. 2003 278 50322 50329 1V93 5,10-Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8 2004-01-20 2004-02-03 Nakajima, Y.,Miyahara, I.,Hirotsu, K. Crystal Structure of 5,10-Methylenetetrahydrofolate reductase from Thermus thermophilus HB8 To be Published 0 0 0 0 1GTW crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter 2002-01-22 2004-02-06 Tahirov, T.H.,Inoue-Bungo, T.,Sato, K.,Sasaki, M.,Ogata, K. Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published 0 0 0 0 1UFI 14522975 Crystal structure of the dimerization domain of human CENP-B 2003-05-30 2004-02-17 Tawaramoto, M.S.,Park, S.-Y.,Tanaka, Y.,Nureki, O.,Kurumizaka, H.,Yokoyama, S. Crystal structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-A resolution J.Biol.Chem. 2003 278 51454 51461 1UDX 15019792 Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8 2003-05-07 2004-03-16 Kukimoto-Niino, M.,Murayama, K.,Inoue, M.,Terada, T.,Tame, J.R.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8. J.Mol.Biol. 2004 337 761 770 1UM9 15033367 branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8 in apo-form 2003-09-25 2004-03-30 Nakai, T.,Nakagawa, N.,Maoka, N.,Masui, R.,Kuramitsu, S.,Kamiya, N. Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography J.Mol.Biol. 2004 337 1011 1033 1UMB 15033367 branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8 in holo-form 2003-09-25 2004-03-30 Nakai, T.,Nakagawa, N.,Maoka, N.,Masui, R.,Kuramitsu, S.,Kamiya, N. Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography J.Mol.Biol. 2004 337 1011 1033 1UMC 15033367 branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8 with 4-methylpentanoate 2003-09-25 2004-03-30 Nakai, T.,Nakagawa, N.,Maoka, N.,Masui, R.,Kuramitsu, S.,Kamiya, N. Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography J.Mol.Biol. 2004 337 1011 1033 1V47 15065853 Crystal structure of ATP sulfurylase from Thermus thermophillus HB8 in complex with APS 2003-11-11 2004-04-06 Taguchi, Y.,Sugishima, M.,Fukuyama, K. Crystal structure of a novel zinc-binding ATP sulfurylase from Thermus thermophilus HB8 Biochemistry 2004 43 4111 4118 1OWM 15213381 DATA1:DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 2003-03-28 2004-04-13 Kort, R.,Komori, H.,Adachi, S.,Miki, K.,Eker, A. DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D 2004 60 1205 1213 1OWN 15213381 DATA3:DNA photolyase / received X-rays dose 4.8 exp15 photons/mm2 2003-03-28 2004-04-13 Kort, R.,Komori, H.,Adachi, S.,Miki, K.,Eker, A. DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D 2004 60 1205 1213 1OWO 15213381 DATA4:photoreduced DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 2003-03-28 2004-04-13 Kort, R.,Komori, H.,Adachi, S.,Miki, K.,Eker, A. DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D 2004 60 1205 1213 1OWP 15213381 DATA6:photoreduced DNA pholyase / received X-rays dose 4.8 exp15 photons/mm2 2003-03-28 2004-04-13 Kort, R.,Komori, H.,Adachi, S.,Miki, K.,Eker, A. DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D 2004 60 1205 1213 1V19 15210349 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS 2004-04-12 2004-04-14 Ohshima, N.,Inagaki, E.,Yasuike, K.,Takio, K.,Tahirov, T.H. Structure of Thermus Thermophilus 2-Keto-3-Deoxygluconate Kinase: Evidence for Recognition of an Open Chain Substrate J.Mol.Biol. 2004 340 477 0 1UI7 14979714 Site-directed mutagenesis of His433 involved in binding of copper ion in Arthrobacter globiformis amine oxidase 2003-07-15 2004-04-20 Matsunami, H.,Okajima, T.,Hirota, S.,Yamaguchi, H.,Hori, H.,Kuroda, S.,Tanizawa, K. Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor Biochemistry 2004 43 2178 2187 1UI8 14979714 Site-directed mutagenesis of His592 involved in binding of copper ion in Arthrobacter globiformis amine oxidase 2003-07-15 2004-04-20 Matsunami, H.,Okajima, T.,Hirota, S.,Yamaguchi, H.,Hori, H.,Kuroda, S.,Tanizawa, K. Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor Biochemistry 2004 43 2178 2187 1V1S 15210349 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS (CRYSTAL FORM 2) 2004-04-23 2004-04-26 Ohshima, N.,Inagaki, E.,Yasuike, K.,Takio, K.,Tahirov, T.H. Structure of Thermus thermophilus 2-Keto-3-deoxygluconate kinase: evidence for recognition of an open chain substrate. J. Mol. Biol. 2004 340 477 489 1SU4 10864315 Crystal structure of calcium ATPase with two bound calcium ions 2004-03-26 2004-05-04 Toyoshima, C.,Nakasako, M.,Nomura, H.,Ogawa, H. Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution Nature 2000 405 647 655 1J3M 15481054 Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8 2003-02-05 2004-05-18 Kishishita, S.,Tatsuguchi, A.,Ushikoshi-Nakayama, R.,Terada, T.,Kuramitsu, S.,Park, S.-Y.,Tame, J.R.,Shirouzu, M.,Yokoyama, S. Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8 Proteins 2004 57 883 887 1V2B 15031714 Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants 2003-10-14 2004-05-18 Ifuku, K.,Nakatsu, T.,Kato, H.,Sato, F. Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum Embo Rep. 2004 5 362 367 1V5W 15125839 Crystal structure of the human Dmc1 protein 2003-11-26 2004-05-18 Kinebuchi, T.,Kagawa, W.,Enomoto, R.,Tanaka, K.,Miyagawa, K.,Shibata, T.,Kurumizaka, H.,Yokoyama, S. Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein dmc1 Mol.Cell 2004 14 363 374 1V5H 15165856 Crystal Structure of Human Cytoglobin (Ferric Form) 2003-11-23 2004-06-08 Sugimoto, H.,Makino, M.,Sawai, H.,Kawada, N.,Yoshizato, K.,Shiro, Y. Structural basis of human cytoglobin for ligand binding. J.Mol.Biol. 2004 339 873 885 1V4U 15117955 Crystal structure of bluefin tuna carbonmonoxy-hemoglobin 2003-11-19 2004-07-06 Yokoyama, T.,Chong, K.T.,Miyazaki, G.,Morimoto, H.,Shih, D.T.,Unzai, S.,Tame, J.R.,Park, S.Y. Novel Mechanisms of pH Sensitivity in Tuna Hemoglobin: A STRUCTURAL EXPLANATION OF THE ROOT EFFECT J.Biol.Chem. 2004 279 28632 28640 1V8D Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus 2004-01-05 2004-07-12 Kishishita, S.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus HB8 To be Published 0 0 0 0 1V8D Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus 2004-01-05 2004-07-12 Kishishita, S.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus HB8 To be Published 0 0 0 0 1V3T 15007077 Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase 2003-11-05 2004-07-13 Hori, T.,Yokomizo, T.,Ago, H.,Sugahara, M.,Ueno, G.,Yamamoto, M.,Kumasaka, T.,Shimizu, T.,Miyano, M. Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop J.Biol.Chem. 2004 279 22615 22623 1V8Q 15340170 Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8 2004-01-13 2004-07-13 Wang, H.,Takemoto-Hori, C.,Murayama, K.,Sakai, H.,Tatsuguchi, A.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8 Protein Sci. 2004 13 2806 2810 1UKH 15141161 Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125 2003-08-23 2004-08-30 Heo, Y.-S.,Kim, S.K.,Seo, C.I.,Kim, Y.K.,Sung, B.-J.,Lee, H.S.,Lee, J.I.,Park, S.-Y.,Kim, J.H.,Hwang, K.Y.,Hyun, Y.-L.,Jeon, Y.H.,Ro, S.,Cho, J.M.,Lee, T.G.,Yang, C.-H. Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125 Embo J. 2004 23 2185 2195 1ULX 15312758 Partially photolyzed structure of CO-bound heme-heme oxygenase complex 2003-09-16 2004-08-31 Sugishima, M.,Sakamoto, H.,Noguchi, M.,Fukuyama, K. CO-trapping site in heme oxygenase revealed by photolysis of its co-bound heme complex: mechanism of escaping from product inhibition J.Mol.Biol. 2004 341 7 13 1VCN 15296735 Crystal Structure of T.th. HB8 CTP synthetase complex with Sulfate anion 2004-03-10 2004-08-31 Goto, M.,Omi, R.,Nakagawa, N.,Miyahara, I.,Hirotsu, K. Crystal Structures of CTP Synthetase Reveal ATP, UTP, and Glutamine Binding Sites Structure 2004 12 1413 1423 1V8I 15210687 Crystal Structure Analysis of the ADP-ribose pyrophosphatase 2004-01-09 2004-10-19 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1V8M 15210687 Crystal structure analysis of ADP-ribose pyrophosphatase complexed with ADP-ribose and Gd 2004-01-12 2004-10-19 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1V8N 15210687 Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with Zn 2004-01-12 2004-10-19 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1V8Y 15210687 Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Zn 2004-01-15 2004-10-19 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1VGG Crystal Structure of the Conserved Hypothetical Protein TTHA1091 from Thermus Thermophilus HB8 2004-04-26 2004-10-26 Satoh, S.,Yao, M.,Kousumi, Y.,Ebihara, A.,Matsumoto, K.,Okamoto, A.,Tanaka, I.,Yokoyama, S.,Kuramitsu, S. Crystal Structure of the Conserved Hypothetical Protein TT1634 from Thermus Thermophilus HB8 To be Published 0 0 0 0 1WR5 14581238 Three dimensional Structure of the E41K mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F 2004-10-11 2004-10-26 Ozawa, K.,Takayama, Y.,Yasukawa, F.,Ohmura, T.,Cusanovich, M.A.,Tomimoto, Y.,Ogata, H.,Higuchi, Y.,Akutsu, H. Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F. Biophys.J. 2003 85 3367 3374 1UKW Crystal structure of medium-chain acyl-CoA dehydrogenase from Thermus thermophilus HB8 2003-09-02 2004-11-09 Hamada, K.,Ago, H.,Kuramitsu, S.,Miyano, M. Crystal structure of Thermus thermophilus medium-chain acyl-CoA dehydrogenase To be published 0 0 0 0 1WDI Crystal Structure Of TT0907 From Thermus Thermophilus HB8 2004-05-17 2004-11-17 Idaka, M.,Yagi, H.,Murayama, K.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal Structure Of TT0907 From Thermus Thermophilus HB8 To be published 0 0 0 0 1V3R 15629661 Crystal structure of TT1020 from Thermus thermophilus HB8 2003-11-05 2004-11-23 Sakai, H.,Wang, H.,Takemoto-Hori, C.,Kaminishi, T.,Yamaguchi, H.,Kamewari, Y.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J.Struct.Biol. 2005 149 99 110 1V3S 15629661 Crystal structure of TT1020 from Thermus thermophilus HB8 2003-11-05 2004-11-23 Sakai, H.,Wang, H.,Takemoto-Hori, C.,Kaminishi, T.,Yamaguchi, H.,Kamewari, Y.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J.Struct.Biol. 2005 149 99 110 1WF3 Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 2004-05-25 2004-11-25 Kawazoe, M.,Hori-Takemoto, C.,Kaminishi, T.,Sekine, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 To be Published 0 0 0 0 1WG8 Crystal structure of a predicted S-adenosylmethionine-dependent methyltransferase TT1512 from Thermus thermophilus HB8. 2004-05-27 2004-11-27 Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of a predicted S-adenosylmethionine-dependent methyltransferase TT1512 from Thermus thermophilus HB8 at 2.0 Ang. resolution. To be Published 0 0 0 0 1WIY Crystal Structure Analysis of a 6-coordinated Cytochorome P450 from Thermus thermophilus HB8 2004-05-28 2004-11-28 Kousumi, Y.,Nakagawa, N.,Kaneko, M.,Yamamoto, H.,Masui, R.,Kuramitsu, S.,Ueyama, N. Crystal Structure Analysis of Cytochrome P450 from Thermus thermophilus HB8 To be Published 0 0 0 0 1V6Z Crystal structure of TT1573 from Thermus thermophilus 2003-12-05 2004-12-14 Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of TT1573 from Thermus thermophilus To be Published 0 0 0 0 1WUB 15741337 Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8 2004-12-03 2004-12-21 Handa, N.,Terada, T.,Doi-Katayama, Y.,Hirota, H.,Tame, J.R.,Park, S.-Y.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8 Protein Sci. 2005 14 1004 1010 1V9O 15629661 Crystal structure of TT1020 from Thermus thermophilus HB8 2004-01-27 2005-01-11 Sakai, H.,Wang, H.,Takemoto-Hori, C.,Kaminishi, T.,Yamaguchi, H.,Kamewari, Y.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J.Struct.Biol. 2005 149 99 110 1UJ8 15937904 Structures of ORF3 in Two Crystal Forms, a Member of Isc Machinery of E. coli Involved in the Assembly of Iron-Sulfur Clusters 2003-07-29 2005-02-15 Shimomura, Y.,Takahashi, Y.,Kakuta, Y.,Fukuyama, K. Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters. Proteins 2005 60 566 569 1V8R 15210687 Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with ADP-ribose and Zn 2004-01-14 2005-02-22 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1VBG 15667207 Pyruvate Phosphate Dikinase from Maize 2004-02-26 2005-03-08 Nakanishi, T.,Nakatsu, T.,Matsuoka, M.,Sakata, K.,Kato, H. Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion Biochemistry 2005 44 1136 1144 1XSS 15731765 Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter. 2004-10-20 2005-03-15 Tsutsui, H.,Karasawa, S.,Shimizu, H.,Nukina, N.,Miyawaki, A. Semi-rational engineering of a coral fluorescent protein into an efficient highlighter Embo Rep. 2005 6 233 238 1VE0 Crystal structure of uncharacterized protein ST2072 from Sulfolobus tokodaii 2004-03-26 2005-03-22 Tanabe, E.,Horiike, Y.,Tsumoto, K.,Yasutake, Y.,Yao, M.,Tanaka, I.,Kumagai, I. Crystal structure of the uncharacterized protein ST2072 from Sulfolobus tokodaii To be Published 0 0 0 0 1WYV 15791207 Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form 2005-02-17 2005-04-05 Nakai, T.,Nakagawa, N.,Maoka, N.,Masui, R.,Kuramitsu, S.,Kamiya, N. Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J. 2005 24 1523 1536 1WRB 15797730 Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase 2004-10-14 2005-04-12 Kurimoto, K.,Muto, Y.,Obayashi, N.,Terada, T.,Shirouzu, M.,Yabuki, T.,Aoki, M.,Seki, E.,Matsuda, T.,Kigawa, T.,Okumura, H.,Tanaka, A.,Shibata, N.,Kashikawa, M.,Agata, K.,Yokoyama, S. Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein J.Struct.Biol. 2005 150 58 68 1VCF Crystal Structure of IPP isomerase at I422 2004-03-08 2005-04-19 Wada, T.,Park, S.-Y.,Tame, R.H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of IPP isomerase at I422 To be Published 0 0 0 0 1VCG Crystal Structure of IPP isomerase at P43212 2004-03-08 2005-04-19 Wada, T.,Park, S.-Y.,Tame, R.H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of IPP isomerase at P43212 To be Published 0 0 0 0 1VE1 Crystal Structure of T.th. HB8 O-acetylserine sulfhydrylase 2004-03-26 2005-04-19 Goto, M. Crystal Structure of T.th. HB8 O-acetylserine sulfhydrylase to be published 0 0 0 0 1WCX Crystal Structure of Mutant Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (L75M/I193M/L248M, SeMet derivative, Form-1 crystal) 2004-05-06 2005-05-06 Mizohata, E.,Matsuura, T.,Murayama, K.,Sakai, H.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Uroporphyrinogen III Synthase from Thermus thermophilus HB8 To be Published 0 0 0 0 1VGJ 17142895 Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii 2004-04-27 2005-06-07 Gao, Y.G.,Yao, M.,Okada, A.,Tanaka, I. The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft ACTA CRYSTALLOGR.,SECT.F 2006 62 1196 1200 1WDZ Crystal structure of RCB domain of IRSp53 2004-05-21 2005-06-07 Murayama, K.,Suetsugu, S.,Seto, A.,Shirouzu, M.,Takenawa, T.,Yokoyama, S. Crystal structure of RCB domain of IRSp53 TO BE PUBLISHED 0 0 0 0 1WG0 Structural comparison of Nas6p protein structures in two different crystal forms 2004-05-27 2005-06-07 Nakamura, Y.,Umehara, T.,Tanaka, A.,Horikoshi, M.,Yokoyama, S.,Padmanabhan, B. Structural comparison of Nas6p protein structures in two different crystal forms To be Published 0 0 0 0 1VC3 Crystal Structure of L-Aspartate-alpha-Decarboxylase 2004-03-04 2005-06-28 Goto, M.,Omi, R.,Nakajima, O.,Miyahara, I.,Hirotsu, K. Crystal Structure of L-Aspartate-alpha-Decarboxylase TO BE PUBLISHED 0 0 0 0 1WLU 16061252 Crystal structure of TT0310 protein from Thermus thermophilus HB8 2004-06-29 2005-07-05 Kunishima, N.,Asada, Y.,Sugahara, M.,Ishijima, J.,Nodake, Y.,Sugahara, M.,Miyano, M.,Kuramitsu, S.,Yokoyama, S.,Sugahara, M. A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI J.Mol.Biol. 2005 352 212 228 1VEF Acetylornithine aminotransferase from Thermus thermophilus HB8 2004-03-30 2005-08-02 Matsumura, M.,Goto, M.,Omi, R.,Miyahara, I.,Hirotsu, K. Three-Dimensional Strutcure of Acetylornithine aminotransferase from Thermus thermophilus HB8 To be Published 0 0 0 0 1WMN 16142901 Crystal structure of topaquinone-containing amine oxidase activated by cobalt ion 2004-07-13 2005-08-02 Okajima, T.,Kishishita, S.,Chiu, Y.C.,Murakawa, T.,Kim, M.,Yamaguchi, H.,Hirota, S.,Kuroda, S.,Tanizawa, K. Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase Biochemistry 2005 44 12041 12048 1WMO 16142901 Crystal structure of topaquinone-containing amine oxidase activated by nickel ion 2004-07-13 2005-08-02 Okajima, T.,Kishishita, S.,Chiu, Y.C.,Murakawa, T.,Kim, M.,Yamaguchi, H.,Hirota, S.,Kuroda, S.,Tanizawa, K. Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase Biochemistry 2005 44 12041 12048 1Z1E 16028220 Crystal structure of stilbene synthase from Arachis hypogaea 2005-03-03 2005-08-30 Shomura, Y.,Torayama, I.,Suh, D.Y.,Xiang, T.,Kita, A.,Sankawa, U.,Miki, K. Crystal structure of stilbene synthase from Arachis hypogaea Proteins 2005 60 803 806 1Z1F 16028220 Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form) 2005-03-03 2005-08-30 Shomura, Y.,Torayama, I.,Suh, D.Y.,Xiang, T.,Kita, A.,Sankawa, U.,Miki, K. Crystal structure of stilbene synthase from Arachis hypogaea Proteins 2005 60 803 806 2COG 16141215 Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate 2005-05-17 2005-08-30 Goto, M.,Miyahara, I.,Hirotsu, K.,Conway, M.,Yennawar, N.,Islam, M.M.,Hutson, S.M. Structural determinants for branched-chain aminotransferase isozyme-specific inhibition by the anticonvulsant drug gabapentin J.Biol.Chem. 2005 280 37246 37256 1WYB Structure of 6-aminohexanoate-dimer hydrolase 2005-02-09 2005-09-20 Negoro, S.,Ohki, T.,Shibata, N.,Mizuno, N.,Wakitani, Y.,Tsurukame, J.,Matsumoto, K.,Kawamoto, I.,Takeo, M.,Higuchi, Y. Structure of 6-aminohexanoate-dimer hydrolase To be Published 0 0 0 0 1WKH Acetylornithine aminotransferase from thermus thermophilus HB8 2004-05-31 2005-09-27 Matsumura, M.,Goto, M.,Omi, R.,Miyahara, I.,Hirotsu, K. Acetylornithine aminotransferase from thermus thermophilus HB8 To be Published 0 0 0 0 2D2E 16216272 Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8 2005-09-08 2005-10-25 Watanabe, S.,Kita, A.,Miki, K. Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8. J.Mol.Biol. 2005 353 1043 1054 2CYC 16325203 Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Pyrococcus horikoshii 2005-07-06 2005-11-22 Kuratani, M.,Sakai, H.,Takahashi, M.,Yanagisawa, T.,Kobayashi, T.,Murayama, K.,Chen, L.,Liu, Z.J.,Wang, B.C.,Kuroishi, C.,Kuramitsu, S.,Terada, T.,Bessho, Y.,Shirouzu, M.,Sekine, S.,Yokoyama, S. Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea J.Mol.Biol. 2006 355 395 408 2CVE Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 2005-06-02 2005-12-02 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 To be Published 0 0 0 0 2CVO 16240442 Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa) 2005-06-10 2005-12-06 Nonaka, T.,Kita, A.,Miura-Ohnuma, J.,Katoh, E.,Inagaki, N.,Yamazaki, T.,Miki, K. Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa) Proteins 2005 61 1137 1140 1WUH Three-Dimensional Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F 2004-12-07 2005-12-07 Ogata, H.,Hirota, S.,Nakahara, A.,Komori, H.,Shibata, N.,Kato, T.,Kano, K.,Higuchi, Y. Structural basis for the activation process of [NiFe] hydrogenase from D.vulgaris Miyazaki F To be Published 0 0 0 0 1WUI 16271886 Ultra-High resolution Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F 2004-12-07 2005-12-07 Ogata, H.,Hirota, S.,Nakahara, A.,Komori, H.,Shibata, N.,Kato, T.,Kano, K.,Higuchi, Y. Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure 2005 13 1635 1642 1WUL 16271886 High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F 2004-12-07 2005-12-07 Ogata, H.,Hirota, S.,Nakahara, A.,Komori, H.,Shibata, N.,Kato, T.,Kano, K.,Higuchi, Y. Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure 2005 13 1635 1642 2CWZ Crystal structure of the Thermus thermophilus hypothetical protein TTHA0967, a thioesterase superfamily member 2005-06-27 2005-12-27 Pioszak, A.A.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of the Thermus thermophilus hypothetical protein TTHA0967, a thioesterase superfamily member To be Published 0 0 0 0 2CX1 Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (tartrate complex) 2005-06-27 2005-12-27 Mizohata, E.,Morita, S.,Nagano, K.,Uda, H.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (tartrate complex) To be Published 0 0 0 0 2CX5 Crystal structure of a putative trans-editing enzyme for prolyl tRNA synthetase 2005-06-28 2005-12-28 Murayama, K.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of a putative trans-editing enzyme for prolyl tRNA synthetase To be Published 0 0 0 0 2CXE Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal) 2005-06-28 2005-12-28 Mizohata, E.,Mishima, C.,Akasaka, R.,Uda, H.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal) To be Published 0 0 0 0 2CYZ photo-activation state of Fe-type NHase in anaerobic condition 2005-07-09 2006-01-09 Kawano, Y.,Hashimoto, K.,Odaka, M.,Nakayama, H.,Takio, K.,Endo, I.,Kamiya, N. photo-activation state of Fe-type NHase in anaerobic condition To be Published 0 0 0 0 2CZ1 photo-activation state of Fe-type NHase with n-BA in anaerobic condition 2005-07-09 2006-01-09 Kawano, Y.,Hashimoto, K.,Odaka, M.,Nakayama, H.,Takio, K.,Endo, I.,Kamiya, N. photo-activation state of Fe-type NHase with n-BA in anaerobic condition To be Published 0 0 0 0 2CZ6 Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide 2005-07-11 2006-01-11 Nojiri, M.,Kawano, Y.,Hashimoto, K.,Kamiya, N. x-ray snap shots of inhibitor binding process in photo-reactive nitrile hydratase To be Published 0 0 0 0 2CZ7 Fe-type NHase photo-activated for 75min at 105K 2005-07-11 2006-01-11 Nojiri, M.,Kawano, Y.,Hashimoto, K.,Kamiya, N. Active Center Structures of Photo-reactive Nitrile Hydratase during its Photo-activation Process To be Published 0 0 0 0 2CUL 16245325 Crystal structure of the GidA-related protein from Thermus thermophilus HB8 2005-05-26 2006-01-24 Iwasaki, W.,Miyatake, H.,Miki, K. Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8 Proteins 2005 61 1121 1126 2CUL 16245325 Crystal structure of the GidA-related protein from Thermus thermophilus HB8 2005-05-26 2006-01-24 Iwasaki, W.,Miyatake, H.,Miki, K. Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8 Proteins 2005 61 1121 1126 2D0U 16477023 Crystal structure of cyanide bound form of human indoleamine 2,3-dioxygenase 2005-08-08 2006-01-31 Sugimoto, H.,Oda, S.,Otsuki, T.,Hino, T.,Yoshida, T.,Shiro, Y. Crystal structure of human indoleamine 2,3-dioxygenase: catalytic mechanism of O2 incorporation by a heme-containing dioxygenase. Proc.Natl.Acad.Sci.Usa 2006 103 2611 2616 2D80 16405909 Crystal structure of PHB depolymerase from Penicillium funiculosum 2005-11-30 2006-01-31 Hisano, T.,Kasuya, K.,Tezuka, Y.,Ishii, N.,Kobayashi, T.,Shiraki, M.,Oroudjev, E.,Hansma, H.,Iwata, T.,Doi, Y.,Saito, T.,Miki, K. The Crystal Structure of Polyhydroxybutyrate Depolymerase from Penicillium funiculosum Provides Insights into the Recognition and Degradation of Biopolyesters J.Mol.Biol. 2006 356 993 1004 2D81 16405909 PHB depolymerase (S39A) complexed with R3HB trimer 2005-11-30 2006-01-31 Hisano, T.,Kasuya, K.,Tezuka, Y.,Ishii, N.,Kobayashi, T.,Shiraki, M.,Oroudjev, E.,Hansma, H.,Iwata, T.,Doi, Y.,Saito, T.,Miki, K. The Crystal Structure of Polyhydroxybutyrate Depolymerase from Penicillium funiculosum Provides Insights into the Recognition and Degradation of Biopolyesters J.Mol.Biol. 2006 356 993 1004 2DDC 19942137 Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process 2006-01-27 2006-03-07 Tsutsui, H.,Shimizu, H.,Mizuno, H.,Nukina, N.,Furuta, T.,Miyawaki, A. The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins. Chem.Biol. 2009 16 1140 1147 2DDD 19942137 Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process 2006-01-27 2006-03-07 Tsutsui, H.,Shimizu, H.,Mizuno, H.,Nukina, N.,Furuta, T.,Miyawaki, A. The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins Chem.Biol. 2009 16 1140 1147 2D1T 16541080 Crystal structure of the thermostable Japanese Firefly Luciferase red-color emission S286N mutant complexed with High-energy intermediate analogue 2005-08-31 2006-03-21 Nakatsu, T.,Ichiyama, S.,Hiratake, J.,Saldanha, A.,Kobashi, N.,Sakata, K.,Kato, H. Structural basis for the spectral difference in luciferase bioluminescence. Nature 2006 440 372 376 1X03 16763557 Crystal structure of endophilin BAR domain 2005-03-14 2006-05-02 Masuda, M.,Takeda, S.,Sone, M.,Ohki, T.,Mori, H.,Kamioka, Y.,Mochizuki, N. Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms Embo J. 2006 25 2889 2897 2DN2 16765986 1.25A resolution crystal structure of human hemoglobin in the deoxy form 2006-04-25 2006-05-09 Park, S.-Y.,Yokoyama, T.,Shibayama, N.,Shiro, Y.,Tame, J.R. 1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms. J.Mol.Biol. 2006 360 690 701 2DN3 16765986 1.25A resolution crystal structure of human hemoglobin in the carbonmonoxy form 2006-04-25 2006-05-09 Park, S.-Y.,Yokoyama, T.,Shibayama, N.,Shiro, Y.,Tame, J.R. 1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms. J.Mol.Biol. 2006 360 690 701 2DKA 16651269 Crystal structure of N-acetylglucosamine-phosphate mutase, a member of the alpha-D-phosphohexomutase superfamily, in the apo-form 2006-04-07 2006-05-16 Nishitani, Y.,Maruyama, D.,Nonaka, T.,Kita, A.,Fukami, T.A.,Mio, T.,Yamada-Okabe, H.,Yamada-Okabe, T.,Miki, K. Crystal Structures of N-Acetylglucosamine-phosphate Mutase, a Member of the {alpha}-D-Phosphohexomutase Superfamily, and Its Substrate and Product Complexes. J.Biol.Chem. 2006 281 19740 19747 2CVC Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough) 2005-06-02 2006-06-06 Suto, K.,Sato, M.,Shibata, N.,Kitamura, M.,Morimoto, Y.,Takayama, Y.,Ozawa, K.,Akutsu, H.,Higuchi, Y.,Yasuoka, N. Structure of High-Molecular Weight Cytochrome c To be Published 0 0 0 0 2DB0 Crystal structure of PH0542 2005-12-14 2006-06-14 Handa, N.,Nishino, A.,Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of PH0542 To be Published 0 0 0 0 2BEC 16710297 Crystal structure of CHP2 in complex with its binding region in NHE1 and insights into the mechanism of pH regulation 2005-10-24 2006-06-27 Ben Ammar, Y.,Takeda, S.,Hisamitsu, T.,Mori, H.,Wakabayashi, S. Crystal structure of CHP2 complexed with NHE1-cytosolic region and an implication for pH regulation Embo J. 2006 25 2315 2325 2DQN 16809541 Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn 2006-05-29 2006-07-18 Nakamura, A.,Yao, M.,Chimnaronk, S.,Sakai, N.,Tanaka, I. Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science 2006 312 1954 1958 2IY6 16934832 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND CITRATE 2006-07-13 2006-07-24 Inagaki, E.,Ohshima, N.,Takahashi, H.,Kuroishi, C.,Yokoyama, S.,Tahirov, T.H. Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol. 2006 362 490 0 2DCU 16924118 Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP 2006-01-16 2006-07-25 Sokabe, M.,Yao, M.,Sakai, N.,Toya, S.,Tanaka, I. Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region. Proc.Natl.Acad.Sci.USA 2006 103 13016 13021 2D0W 16533029 Crystal structure of cytochrome cL from Hyphomicrobium denitrificans 2005-08-10 2006-08-10 Nojiri, M.,Hira, D.,Yamaguchi, K.,Okajima, T.,Tanizawa, K.,Suzuki, S. Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins Biochemistry 2006 45 3481 3492 2D3E Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin 2005-09-27 2006-09-12 Nitanai, Y.,Maeda, K.,Oda, N.,Minakata, S.,Maeda, Y. The Crystal Structure of C-Terminal Fragment of Rabbit Skeletal Alpha-Tropomyosin; Crystallographic Evidence of Tropomyosin Bending To be Published 0 0 0 0 2CY8 Crystal structure of D-phenylglycine aminotransferase (D-PhgAT) from Pseudomonas strutzeri ST-201 2005-07-05 2006-09-26 Kongsaeree, P.,Shirouzu, M.,Yokoyama, S. Crystal structure of D-phenylglycine aminotransferase (D-PhgAT) from Pseudomonas strutzeri ST-201 To be Published 0 0 0 0 2D3Y 17870091 Crystal structure of uracil-DNA glycosylase from Thermus Thermophilus HB8 2005-10-04 2006-10-17 Kosaka, H.,Hoseki, J.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol. 2007 373 839 850 2D5W The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide 2005-11-07 2006-10-17 Morita, A.,Sakai, N.,Yao, M.,Watanabe, N.,Tanaka, I. The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide To be Published 0 0 0 0 2D6C 17173408 Crystal structure of myoglobin reconstituted with iron porphycene 2005-11-11 2006-10-31 Hayashi, T.,Murata, D.,Makino, M.,Sugimoto, H.,Matsuo, T.,Sato, H.,Shiro, Y.,Hisaeda, Y. Crystal structure and peroxidase activity of myoglobin reconstituted with iron porphycene Inorg.Chem. 2006 45 10530 10536 2D6Y 23831227 Crystal Structure of transcriptional factor SCO4008 from Streptomyces coelicolor A3(2) 2005-11-15 2006-10-31 Hayashi, T.,Tanaka, Y.,Sakai, N.,Okada, U.,Yao, M.,Watanabe, N.,Tamura, T.,Tanaka, I. SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition. J.Mol.Biol. 2013 425 3289 3300 2DOU probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8 2006-05-03 2006-11-03 Omi, R.,Goto, M.,Miyahara, I.,Hirotsu, K. probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8 To be published 0 0 0 0 2DSC 17052728 Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and ADP-ribose 2006-06-28 2006-11-14 Zha, M.,Zhong, C.,Peng, Y.,Hu, H.,Ding, J. Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol. 2006 364 1021 1033 2EWI The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F 2005-11-03 2006-11-28 Higuchi, Y.,Komori, H.,Morita, K. The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris To be Published 0 0 0 0 2EWU The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F 2005-11-07 2006-11-28 Higuchi, Y.,Komori, H.,Morita, K. The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F To be Published 0 0 0 0 2DKF 16945939 Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-beta-lactamase Superfamily 2006-04-10 2006-12-05 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily J.Biochem.(Tokyo) 2006 140 535 542 2FFN The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F 2005-12-20 2006-12-05 Yahata, N.,Ozawa, K.,Tomimoto, Y.,Morita, K.,Komori, H.,Ogata, H.,Higuchi, Y.,Akutsu, H. Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F BIOPHYSICS(BSJ) 2006 2 45 56 2DG1 17166853 Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+ 2006-03-07 2006-12-12 Tanaka, Y.,Morikawa, K.,Ohki, Y.,Yao, M.,Tsumoto, K.,Watanabe, N.,Ohta, T.,Tanaka, I. Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem. 2007 282 5770 5780 2DX1 17190834 Crystal structure of RhoGEF protein Asef 2006-08-22 2007-01-02 Murayama, K.,Shirouzu, M.,Kawasaki, Y.,Kato-Murayama, M.,Hanawa-Suetsugu, K.,Sakamoto, A.,Katsura, Y.,Suenaga, A.,Toyama, M.,Terada, T.,Taiji, M.,Akiyama, T.,Yokoyama, S. Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism J.Biol.Chem. 2007 282 4238 4242 2FMY 17292914 CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form) 2006-01-10 2007-01-16 Komori, H.,Inagaki, S.,Yoshioka, S.,Aono, S.,Higuchi, Y. Crystal Structure of CO-sensing Transcription Activator CooA Bound to Exogenous Ligand Imidazole J.Mol.Biol. 2007 367 864 871 2DD4 17222425 Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme 2006-01-19 2007-01-30 Arakawa, T.,Kawano, Y.,Kataoka, S.,Katayama, Y.,Kamiya, N.,Yohda, M.,Odaka, M. Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center. J.Mol.Biol. 2007 366 1497 1509 2DX6 Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8 2006-08-24 2007-02-24 Kishishita, S.,Murayama, K.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8 To be Published 0 0 0 0 2EF1 Crystal structure of the extracellular domain of human CD38 2007-02-20 2007-02-27 Kukimoto-Niino, M.,Nureki, O.,Murayama, K.,Shirouzu, M.,Katada, T.,Hara-Yokoyama, M.,Yokoyama, S. Crystal structure of the extracellular domain of human CD38 To be Published 0 0 0 0 2DG6 23618855 Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2) 2006-03-08 2007-03-13 Hayashi, T.,Tanaka, Y.,Sakai, N.,Watanabe, N.,Tamura, T.,Tanaka, I.,Yao, M. Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape Biochem. Biophys. Res. Commun. 2013 435 28 33 2DP6 Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA 2006-05-07 2007-05-22 Kosaka, H.,Nakagawa, N.,Masui, R.,Kuramitsu, S. Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis To be Published 0 0 0 0 2EBS 17498741 Crystal Structure Anaalysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH) D465N Mutant Complexed with a Xyloglucan Heptasaccharide 2007-02-09 2007-06-26 Yaoi, K.,Kondo, H.,Hiyoshi, A.,Noro, N.,Sugimoto, H.,Tsuda, S.,Mitsuishi, Y.,Miyazaki, K. The Structural Basis for the Exo-mode of Action in GH74 Oligoxyloglucan Reducing End-specific Cellobiohydrolase. J.Mol.Biol. 2007 370 53 62 2Z3T 17606921 Crystal Structure of Substrate Free Cytochrome P450 StaP (CYP245A1) 2007-06-06 2007-07-03 Makino, M.,Sugimoto, H.,Shiro, Y.,Asamizu, S.,Onaka, H.,Nagano, S. Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton Proc.Natl.Acad.Sci.Usa 2007 104 11591 11596 2Z3T 17606921 Crystal Structure of Substrate Free Cytochrome P450 StaP (CYP245A1) 2007-06-06 2007-07-03 Makino, M.,Sugimoto, H.,Shiro, Y.,Asamizu, S.,Onaka, H.,Nagano, S. Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton Proc.Natl.Acad.Sci.Usa 2007 104 11591 11596 2Z3U 17606921 Crystal Structure of Chromopyrrolic Acid Bound Cytochrome P450 StaP (CYP245A1) 2007-06-06 2007-07-03 Makino, M.,Sugimoto, H.,Shiro, Y.,Asamizu, S.,Onaka, H.,Nagano, S. Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton Proc.Natl.Acad.Sci.Usa 2007 104 11591 11596 2E9F Crystal Structure of T.th.HB8 Argininosuccinate lyase complexed with L-Arginine 2007-01-25 2007-07-31 Goto, M. Crystal Structure of T.th.HB8 Argininosuccinate lyase complexed with L-Arginine To be published 0 0 0 0 2DVQ 20048151 Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide 2006-08-01 2007-08-07 Umehara, T.,Nakamura, Y.,Jang, M.K.,Nakano, K.,Tanaka, A.,Ozato, K.,Padmanabhan, B.,Yokoyama, S. Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain. J.Biol.Chem. 2010 285 7610 7618 2DVR 20048151 Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide 2006-08-01 2007-08-07 Umehara, T.,Nakamura, Y.,Jang, M.K.,Nakano, K.,Tanaka, A.,Ozato, K.,Padmanabhan, B.,Yokoyama, S. Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain. J.Biol.Chem. 2010 285 7610 7618 2DVS 20048151 Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide 2006-08-01 2007-08-07 Umehara, T.,Nakamura, Y.,Jang, M.K.,Nakano, K.,Tanaka, A.,Ozato, K.,Padmanabhan, B.,Yokoyama, S. Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain. J.Biol.Chem. 2010 285 7610 7618 2PNO 17632548 Crystal structure of human leukotriene C4 synthase 2007-04-24 2007-08-07 Ago, H.,Kanaoka, Y.,Irikura, D.,Lam, B.K.,Shimamura, T.,Austen, K.F.,Miyano, M. Crystal structure of a human membrane protein involved in cysteinyl leukotriene biosynthesis Nature 2007 448 609 612 2PNO 17632548 Crystal structure of human leukotriene C4 synthase 2007-04-24 2007-08-07 Ago, H.,Kanaoka, Y.,Irikura, D.,Lam, B.K.,Shimamura, T.,Austen, K.F.,Miyano, M. Crystal structure of a human membrane protein involved in cysteinyl leukotriene biosynthesis Nature 2007 448 609 612 2EKT 17636874 Crystal structure of myoglobin reconstituted with 6-methyl-6-depropionatehemin 2007-03-25 2007-08-14 Harada, K.,Makino, M.,Sugimoto, H.,Hirota, S.,Matsuo, T.,Shiro, Y.,Hisaeda, Y.,Hayashi, T. Structure and ligand binding properties of myoglobins reconstituted with monodepropionated heme: functional role of each heme propionate side chain Biochemistry 2007 46 9406 9416 2E69 17561111 Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with sulfate 2006-12-26 2007-08-28 Iwasaki, W.,Miki, K. Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP J.Mol.Biol. 2007 371 123 136 2E6B 17561111 Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with magnesium and tungstate 2006-12-26 2007-08-28 Iwasaki, W.,Miki, K. Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP J.Mol.Biol. 2007 371 123 136 2E6C 17561111 Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 cocrystallized with manganese and AMP 2006-12-26 2007-08-28 Iwasaki, W.,Miki, K. Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP J.Mol.Biol. 2007 371 123 136 2E6G 17561111 Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with phosphate 2006-12-26 2007-08-28 Iwasaki, W.,Miki, K. Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP J.Mol.Biol. 2007 371 123 136 2E6H 17561111 Crystal structure of E37A mutant of the stationary phase survival protein SurE from Thermus thermophilus HB8 cocrystallized with manganese and AMP 2006-12-26 2007-08-28 Iwasaki, W.,Miki, K. Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP J.Mol.Biol. 2007 371 123 136 2YYG 17804419 Crystal structure of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase 2007-04-30 2007-09-04 Kim, S.-H.,Hisano, T.,Takeda, K.,Iwasaki, W.,Ebihara, A.,Miki, K. Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8 J.Biol.Chem. 2007 282 33107 33117 2YYI 17804419 Crystal structure of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase complexed with FAD 2007-04-30 2007-09-04 Kim, S.-H.,Hisano, T.,Takeda, K.,Iwasaki, W.,Ebihara, A.,Miki, K. Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8 J.Biol.Chem. 2007 282 33107 33117 2YYJ 17804419 Crystal structure of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase complexed with FAD and 4-hydroxyphenylacetate 2007-04-30 2007-09-04 Kim, S.-H.,Hisano, T.,Takeda, K.,Iwasaki, W.,Ebihara, A.,Miki, K. Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8 J.Biol.Chem. 2007 282 33107 33117 2Z4H 17698001 Crystal structure of the Cpx pathway activator NlpE from Escherichia coli 2007-06-18 2007-09-04 Hirano, Y.,Hossain, M.M.,Takeda, K.,Tokuda, H.,Miki, K. Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure 2007 15 963 976 2Z4H 17698001 Crystal structure of the Cpx pathway activator NlpE from Escherichia coli 2007-06-18 2007-09-04 Hirano, Y.,Hossain, M.M.,Takeda, K.,Tokuda, H.,Miki, K. Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure 2007 15 963 976 2Z4I 17698001 Crystal structure of the Cpx pathway activator NlpE from Escherichia coli 2007-06-18 2007-09-04 Hirano, Y.,Hossain, M.M.,Takeda, K.,Tokuda, H.,Miki, K. Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure 2007 15 963 976 2Z4I 17698001 Crystal structure of the Cpx pathway activator NlpE from Escherichia coli 2007-06-18 2007-09-04 Hirano, Y.,Hossain, M.M.,Takeda, K.,Tokuda, H.,Miki, K. Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure 2007 15 963 976 2EIW Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound L-proline 2007-03-13 2007-09-18 Inagaki, E.,Ohshima, N.,Sakamoto, K.,Yokoyama, S.,Tahirov, T.H. Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD To be Published 0 0 0 0 2EJ6 Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound D-proline 2007-03-15 2007-09-18 Inagaki, E.,Ohshima, N.,Sakamoto, K.,Yokoyama, S.,Tahirov, T.H. Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD To be Published 0 0 0 0 2EJD Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound L-alanine 2007-03-16 2007-09-18 Inagaki, E.,Ohshima, N.,Sakamoto, K.,Yokoyama, S.,Tahirov, T.H. Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD To be Published 0 0 0 0 2EJL Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound L-serine 2007-03-16 2007-09-18 Inagaki, E.,Ohshima, N.,Sakamoto, K.,Yokoyama, S.,Tahirov, T.H. Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD To be Published 0 0 0 0 2YQZ Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine 2007-04-01 2007-10-02 Kagawa, W.,Kurumizaka, H.,Yokoyama, S. Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine To be published 0 0 0 0 2Z1T 17706667 Crystal Structure of Hydrogenase Maturation Protein HypE 2007-05-15 2007-10-09 Shomura, Y.,Komori, H.,Miyabe, N.,Tomiyama, M.,Shibata, N.,Higuchi, Y. Crystal Structures of Hydrogenase Maturation Protein HypE in the Apo and ATP-bound Forms J.Mol.Biol. 2007 372 1045 1054 2Z1U 17706667 Crystal Structure of Hydrogenase Maturation Protein HypE in complex with ATP 2007-05-15 2007-10-09 Shomura, Y.,Komori, H.,Miyabe, N.,Tomiyama, M.,Shibata, N.,Higuchi, Y. Crystal Structures of Hydrogenase Maturation Protein HypE in the Apo and ATP-bound Forms J.Mol.Biol. 2007 372 1045 1054 2YY3 Crystal Structure of translation elongation factor EF-1 beta from Pyrococcus horikoshii 2007-04-27 2007-10-30 Ishii, T.,Bessho, Y.,Yokoyama, S. Crystal Structure of translation elongation factor EF-1 beta from Pyrococcus horikoshii To be Published 0 0 0 0 2YZO Crystal structure of uncharacterized conserved protein from Thermotoga maritima 2007-05-06 2007-11-06 Nakagawa, N.,Nakamura, Y.,Bessho, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermotoga maritima To be Published 0 0 0 0 2Z6S 17929929 Crystal structure of the oxy myoglobin free from X-ray-induced photoreduction 2007-08-08 2007-11-06 Unno, M.,Chen, H.,Kusama, S.,Shaik, S.,Ikeda-Saito, M. Structural Characterization of the Fleeting Ferric Peroxo Species in Myoglobin: Experiment and Theory J.Am.Chem.Soc. 2007 129 13394 13395 2Z6T 17929929 Crystal structure of the ferric peroxo myoglobin 2007-08-08 2007-11-06 Unno, M.,Chen, H.,Kusama, S.,Shaik, S.,Ikeda-Saito, M. Structural Characterization of the Fleeting Ferric Peroxo Species in Myoglobin: Experiment and Theory J.Am.Chem.Soc. 2007 129 13394 13395 2Z0R Crystal structure of hypothetical protein TTHA0547 2007-05-07 2007-11-13 Murayama, K.,Kato-Murayama, M.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of hypothetical protein TTHA0547 to be published 0 0 0 0 2Z0Y Crystal structure of TTHA0657-SAM complex 2007-05-07 2007-11-13 Murayama, K.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of TTHA0657-SAM complex To be Published 0 0 0 0 2ZCF 16636455 Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 2007-11-08 2007-11-20 Takarada, H.,Kawano, Y.,Hashimoto, K.,Nakayama, H.,Ueda, S.,Yohda, M.,Kamiya, N.,Dohmae, N.,Maeda, M.,Odaka, M. Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 Biosci.Biotechnol.Biochem. 2006 70 881 889 2E42 Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment 2006-12-01 2007-12-18 Tahirov, T.H.,Inoue-Bungo, T.,Sato, K.,Shiina, M.,Hamada, K.,Ogata, K. Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published 0 0 0 0 2E43 Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment 2006-12-01 2007-12-18 Tahirov, T.H.,Inoue-Bungo, T.,Sato, K.,Shiina, M.,Hamada, K.,Ogata, K. Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published 0 0 0 0 2Z55 18082767 Bacterioruberin in the trimeric structure of archaerhodopsin-2 2007-06-28 2008-01-01 Yoshimura, K.,Kouyama, T. Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2 J.Mol.Biol. 2008 375 1267 1281 2E84 Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion 2007-01-17 2008-01-15 Osuka, H.,Suto, K.,Sato, M.,Shibata, N.,Kitamura, M.,Morimoto, Y.,Ozawa, K.,Akutsu, H.,Higuchi, Y.,Yasuoka, N. Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) To be Published 0 0 0 0 2YVA 17699754 Crystal structure of Escherichia coli DiaA 2007-04-10 2008-01-22 Keyamura, K.,Fujikawa, N.,Ishida, T.,Ozaki, S.,Suetsugu, M.,Fujimitsu, K.,Kagawa, W.,Yokoyama, S.,Kurumizaka, H.,Katayama, T. The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes Genes Dev. 2007 21 2083 2099 2ZA6 17938140 recombinant horse L-chain apoferritin 2007-10-02 2008-01-22 Yoshizawa, K.,Mishima, Y.,Park, S.-Y.,Heddle, J.G.,Tame, J.R.H.,Iwahori, K.,Kobayashi, M.,Yamashita, I. Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment J.BIOCHEM.(TOKYO) 2007 142 707 713 2ZA7 17938140 recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-4) 2007-10-02 2008-01-22 Yoshizawa, K.,Mishima, Y.,Park, S.-Y.,Heddle, J.G.,Tame, J.R.H.,Iwahori, K.,Kobayashi, M.,Yamashita, I. Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment J.BIOCHEM.(TOKYO) 2007 142 707 713 2ZA8 17938140 recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-8) 2007-10-02 2008-01-22 Yoshizawa, K.,Mishima, Y.,Park, S.-Y.,Heddle, J.G.,Tame, J.R.H.,Iwahori, K.,Kobayashi, M.,Yamashita, I. Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment J.BIOCHEM.(TOKYO) 2007 142 707 713 2E46 Crystal Structure Analysis of the clock protein EA4 2006-12-05 2008-02-05 Hiraki, T.,Shibayama, N.,Tame, J.R.M.,Akashi, S.,Park, S.-Y. the clock protein EA4 ticks away with movement of a mobile copper ion To be Published 0 0 0 0 2ZGY 18188150 PARM with GDP 2008-01-30 2008-02-12 Popp, D.,Narita, A.,Oda, T.,Fujisawa, T.,Matsuo, H.,Nitanai, Y.,Iwasa, M.,Maeda, K.,Onishi, H.,Maeda, Y. Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability Embo J. 2008 27 570 579 2ZGZ 18188150 PARM with GMPPNP 2008-01-30 2008-02-12 Popp, D.,Narita, A.,Oda, T.,Fujisawa, T.,Matsuo, H.,Nitanai, Y.,Iwasa, M.,Maeda, K.,Onishi, H.,Maeda, Y. Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability Embo J. 2008 27 570 579 2YVM 18039767 Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 2007-04-13 2008-02-26 Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol. 2008 190 1108 1117 2YVN 18039767 Crystal structure of NDX2 from thermus thermophilus HB8 2007-04-13 2008-02-26 Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol. 2008 190 1108 1117 2YVO 18039767 Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8 2007-04-13 2008-02-26 Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol. 2008 190 1108 1117 2YVP 18039767 Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 2007-04-13 2008-02-26 Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol. 2008 190 1108 1117 2ZC8 18214979 Crystal structure of N-Acylamino Acid Racemase from Thermus thermophilus HB8 2007-11-05 2008-02-26 Hayashida, M.,Kim, S.H.,Takeda, K.,Hisano, T.,Miki, K. Crystal structure of N-acylamino acid racemase from Thermus thermophilus HB8 Proteins 2008 71 519 523 2EFR Crystal structure of the c-terminal tropomyosin fragment with N- and C-terminal extensions of the leucine zipper at 1.8 angstroms resolution 2007-02-23 2008-03-04 Minakata, S.,Nitanai, Y.,Maeda, K.,Oda, N.,Wakabayashi, K.,Maeda, Y. Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule To be Published 0 0 0 0 2EFS Crystal structure of the C-terminal tropomyosin fragment with N- and C-terminal extensions of the leucine zipper at 2.0 angstroms resolution 2007-02-23 2008-03-04 Minakata, S.,Nitanai, Y.,Maeda, K.,Oda, N.,Wakabayashi, K.,Maeda, Y. Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule To be Published 0 0 0 0 2EG4 Crystal Structure of Probable Thiosulfate Sulfurtransferase 2007-02-27 2008-03-04 Sakai, H.,Ebihara, A.,Kitamura, Y.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Probable Thiosulfate Sulfurtransferase To be Published 0 0 0 0 2EHD Crystal Structure Analysis of Oxidoreductase 2007-03-06 2008-03-11 Kamiya, N.,Hikima, T.,Ebihara, A.,Inoue, Y. Crystal structure analysis of putative oxidoreductase from Thermus thermophilus HB8 to be published 0 0 0 0 2EIH Crystal Structure of NAD-dependent alcohol dehydrogenase 2007-03-13 2008-03-18 Kamiya, N.,Hikima, T.,Matsu, T.,Maoka, N. Crystal structure analysis of putative NAD-dependent alcohol dehydrogenase from Thermus thermophilus HB8 To be published 0 0 0 0 2EJ2 Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase Complexed with N-(5'-Phosphopyridoxyl)-L-Glutamate 2007-03-14 2008-03-18 Goto, M. Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase Complexed with N-(5'-Phosphopyridoxyl)-L-Glutamate TO BE PUBLISHED 0 0 0 0 2EJ3 Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase Complexed with Gabapentin 2007-03-14 2008-03-18 Goto, M. Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase Complexed with Gabapentin To be Published 0 0 0 0 2EK8 Aminopeptidase from Aneurinibacillus sp. strain AM-1 2007-03-22 2008-03-25 Akioka, M.,Nakano, H.,Tsujimoto, Y.,Matsui, H.,Nakatsu, T.,Kato, H.,Watanabe, K. Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1 To be published 0 0 0 0 2ZHG 18334645 Crystal structure of SoxR in complex with DNA 2008-02-05 2008-03-25 Watanabe, S.,Kita, A.,Kobayashi, K.,Miki, K. Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA Proc.Natl.Acad.Sci.Usa 2008 105 4121 4126 2EQ6 Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 2007-03-30 2008-04-01 Nakai, T.,Kamiya, N. Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8 To be Published 0 0 0 0 2EQ7 Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdo 2007-03-30 2008-04-01 Nakai, T.,Kamiya, N. Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8 To be Published 0 0 0 0 2ZBX 18314962 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (wild type) with imidazole bound 2007-10-30 2008-04-08 Sugimoto, H.,Shinkyo, R.,Hayashi, K.,Yoneda, S.,Yamada, M.,Kamakura, M.,Ikushiro, S.,Shiro, Y.,Sakaki, T. Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3 Biochemistry 2008 47 4017 4027 2ZBX 18314962 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (wild type) with imidazole bound 2007-10-30 2008-04-08 Sugimoto, H.,Shinkyo, R.,Hayashi, K.,Yoneda, S.,Yamada, M.,Kamakura, M.,Ikushiro, S.,Shiro, Y.,Sakaki, T. Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3 Biochemistry 2008 47 4017 4027 2ZBY 18314962 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant) 2007-10-30 2008-04-08 Sugimoto, H.,Shinkyo, R.,Hayashi, K.,Yoneda, S.,Yamada, M.,Kamakura, M.,Ikushiro, S.,Shiro, Y.,Sakaki, T. Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3 Biochemistry 2008 47 4017 4027 2ZBZ 18314962 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant) in complex with 1,25-dihydroxyvitamin D3 2007-10-30 2008-04-08 Sugimoto, H.,Shinkyo, R.,Hayashi, K.,Yoneda, S.,Yamada, M.,Kamakura, M.,Ikushiro, S.,Shiro, Y.,Sakaki, T. Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3 Biochemistry 2008 47 4017 4027 2ZJV 18338186 Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein (Ls-AChBP) Complexed with Clothianidin 2008-03-10 2008-04-08 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Hirata, K.,Nishiwaki, H.,Morimoto, T.,Akamatsu, M.,Ashikawa, Y.,Kuroda, S.,Mega, R.,Kuramitsu, S.,Sattelle, D.B.,Matsuda, K. Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin Invert.Neurosci. 2008 8 71 81 2YRR hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8 2007-04-02 2008-04-15 Miyahara, I.,Matsumura, M.,Goto, M.,Omi, R.,Hirotsu, K. hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z6B 18098245 Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin 2007-07-28 2008-04-15 Koshiyama, T.,Yokoi, N.,Ueno, T.,Kanamaru, S.,Nagano, S.,Shiro, Y.,Arisaka, F.,Watanabe, Y. Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor. Small 2008 4 50 54 2ZHS 18378702 Crystal structure of BACE1 at pH 4.0 2008-02-08 2008-04-22 Shimizu, H.,Tosaki, A.,Kaneko, K.,Hisano, T.,Sakurai, T.,Nukina, N. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol. 2008 28 3663 3671 2ZHT 18378702 Crystal structure of BACE1 at pH 4.5 2008-02-08 2008-04-22 Shimizu, H.,Tosaki, A.,Kaneko, K.,Hisano, T.,Sakurai, T.,Nukina, N. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol. 2008 28 3663 3671 2ZHU 18378702 Crystal structure of BACE1 at pH 5.0 2008-02-08 2008-04-22 Shimizu, H.,Tosaki, A.,Kaneko, K.,Hisano, T.,Sakurai, T.,Nukina, N. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol. 2008 28 3663 3671 2ZHV 18378702 Crystal structure of BACE1 at pH 7.0 2008-02-08 2008-04-22 Shimizu, H.,Tosaki, A.,Kaneko, K.,Hisano, T.,Sakurai, T.,Nukina, N. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol. 2008 28 3663 3671 2YYW The F20M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F 2007-05-02 2008-05-06 Takayama, Y.,Komori, H.,Morita, K.,Higuchi, Y.,Akutsu, H. Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F To be Published 0 0 0 0 2YYX The Y65A mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F 2007-05-02 2008-05-06 Takayama, Y.,Komori, H.,Morita, K.,Higuchi, Y.,Akutsu, H. Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F To be Published 0 0 0 0 2Z0L 19801550 Crystal structure of EBV-DNA polymerase accessory protein BMRF1 2007-05-07 2008-05-13 Murayama, K.,Nakayama, S.,Kato-Murayama, M.,Akasaka, R.,Ohbayashi, N.,Kamewari-Hayami, Y.,Terada, T.,Shirouzu, M.,Tsurumi, T.,Yokoyama, S. Crystal structure of Epstein-Barr virus DNA polymerase processivity factor BMRF1 J.Biol.Chem. 2009 284 35896 35905 2Z0N Crystal structure of APPL1-BAR domain 2007-05-07 2008-05-13 Murayama, K.,Kato-Murayama, M.,Sakamoto, A.,Shirouzu, M.,Yokoyama, S. Crystal structure of APPL1-BAR domain To be Published 0 0 0 0 2Z0V Crystal structure of BAR domain of Endophilin-III 2007-05-07 2008-05-13 Murayama, K.,Kato-Murayama, M.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of BAR domain of Endophilin-III To be Published 0 0 0 0 2Z1K Crystal Structure of Ttha1563 from Thermus thermophilus HB8 2007-05-08 2008-05-13 Niwa, H.,Shimada, A.,Matsunaga, E.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Ttha1563 from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z1O 18574155 Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state 2007-05-10 2008-05-13 Mizuno, H.,Mal, T.K.,Walchli, M.,Kikuchi, A.,Fukano, T.,Ando, R.,Jeyakanthan, J.,Taka, J.,Shiro, Y.,Ikura, M.,Miyawaki, A. Light-dependent regulation of structural flexibility in a photochromic fluorescent protein Proc.Natl.Acad.Sci.Usa 2008 105 9227 9232 2Z1Q Crystal structure of acyl CoA dehydrogenase 2007-05-11 2008-05-13 Hikima, T.,Kawano, Y.,Nodake, Y.,Kamiya, N. Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z6C 18585389 Crystal structure of LOV1 domain of phototropin1 from Arabidopsis thaliana 2007-07-29 2008-07-29 Nakasako, M.,Zikihara, K.,Matsuoka, D.,Katsura, H.,Tokutomi, S. Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2 J.Mol.Biol. 2008 381 718 733 2ZIF 18618709 Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine 2008-02-15 2008-07-29 Morita, R.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins 2008 73 259 264 2ZIG 18618709 Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8 2008-02-15 2008-07-29 Morita, R.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins 2008 73 259 264 2ZPC 18617521 Crystal structure of the R43L mutant of LolA in the closed form 2008-07-10 2008-08-05 Oguchi, Y.,Takeda, K.,Watanabe, S.,Yokota, N.,Miki, K.,Tokuda, H. Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release. J.Biol.Chem. 2008 283 25414 25420 2ZPD 18617521 Crystal structure of the R43L mutant of LolA in the open form 2008-07-10 2008-08-05 Oguchi, Y.,Takeda, K.,Watanabe, S.,Yokota, N.,Miki, K.,Tokuda, H. Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release. J.Biol.Chem. 2008 283 25414 25420 2ZIB 18674542 Crystal structure analysis of calcium-independent type II antifreeze protein 2008-02-14 2008-08-19 Nishimiya, Y.,Kondo, H.,Takamichi, M.,Sugimoto, H.,Suzuki, M.,Miura, A.,Tsuda, S. Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus J.Mol.Biol. 2008 382 734 746 2ZMU 18844376 Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 9.1 2008-04-21 2008-10-21 Kikuchi, A.,Fukumura, E.,Karasawa, S.,Mizuno, H.,Miyawaki, A.,Shiro, Y. Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange Biochemistry 2008 47 11573 11580 2ZMW 18844376 Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 6.0 2008-04-21 2008-10-21 Kikuchi, A.,Fukumura, E.,Karasawa, S.,Mizuno, H.,Miyawaki, A.,Shiro, Y. Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange Biochemistry 2008 47 11573 11580 3CV8 18937506 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84F mutant) 2008-04-18 2008-11-04 Hayashi, K.,Sugimoto, H.,Shinkyo, R.,Yamada, M.,Ikeda, S.,Ikushiro, S.,Kamakura, M.,Shiro, Y.,Sakaki, T. Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1 Biochemistry 2008 47 11964 11972 3CV9 18937506 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R73A/R84A mutant) in complex with 1alpha,25-dihydroxyvitamin D3 2008-04-18 2008-11-04 Hayashi, K.,Sugimoto, H.,Shinkyo, R.,Yamada, M.,Ikeda, S.,Ikushiro, S.,Kamakura, M.,Shiro, Y.,Sakaki, T. Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1 Biochemistry 2008 47 11964 11972 2ZBP Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus in complex with S-adenosyl-L-methionine 2007-10-26 2008-11-11 Kaminishi, T.,Sakai, H.,Takemoto-Hori, C.,Terada, T.,Nakagawa, N.,Maoka, N.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus To be Published 0 0 0 0 2ZBQ Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus in complex with S-adenosyl-L-homocysteine 2007-10-26 2008-11-11 Kaminishi, T.,Sakai, H.,Takemoto-Hori, C.,Terada, T.,Nakagawa, N.,Maoka, N.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus To be Published 0 0 0 0 2ZBR Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus in complex with S-adenosyl-ornithine 2007-10-26 2008-11-11 Kaminishi, T.,Sakai, H.,Takemoto-Hori, C.,Terada, T.,Nakagawa, N.,Maoka, N.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus To be Published 0 0 0 0 2ZNS 21893069 Crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, GluR5, in complex with glutamate 2008-05-01 2009-05-05 Unno, M.,Shinohara, M.,Takayama, K.,Tanaka, H.,Teruya, K.,Doh-Ura, K.,Sakai, R.,Sasaki, M.,Ikeda-Saito, M. Binding and Selectivity of the Marine Toxin Neodysiherbaine A and Its Synthetic Analogues to GluK1 and GluK2 Kainate Receptors. J.Mol.Biol. 2011 413 667 683 2ZO6 19402703 Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein 2008-05-06 2009-05-12 Kikuchi, A.,Fukumura, E.,Karasawa, S.,Shiro, Y.,Miyawaki, A. Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry 2009 48 5276 5283 2ZO7 19402703 Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein 2008-05-06 2009-05-12 Kikuchi, A.,Fukumura, E.,Karasawa, S.,Shiro, Y.,Miyawaki, A. Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry 2009 48 5276 5283 3A1L 19385626 Crystal Structure of 11,11'-Dichlorochromopyrrolic Acid Bound Cytochrome P450 StaP (CYP245A1) 2009-04-09 2009-05-12 Wang, Y.,Chen, H.,Makino, M.,Shiro, Y.,Nagano, S.,Asamizu, S.,Onaka, H.,Shaik, S. Theoretical and experimental studies of the conversion of chromopyrrolic acid to an antitumor derivative by cytochrome P450 StaP: the catalytic role of water molecules J.Am.Chem.Soc. 2009 131 6748 6762 3HRX 19452559 Crystal structure of phenylacetic acid degradation protein PaaG 2009-06-10 2009-06-23 Kichise, T.,Hisano, T.,Takeda, K.,Miki, K. Crystal structure of phenylacetic acid degradation protein PaaG from Thermus thermophilus HB8 Proteins 2009 76 779 786 3DTV 20136121 Crystal structure of arylmalonate decarboxylase 2008-07-16 2009-07-21 Obata, R.,Nakasako, M. Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form Biochemistry 2010 49 1963 1969 2ZR8 19640845 Crystal Structure of Modified Serine Racemase complexed with Serine 2008-08-25 2009-07-28 Goto, M.,Yamauchi, T.,Kamiya, N.,Miyahara, I.,Yoshimura, T.,Mihara, H.,Kurihara, T.,Hirotsu, K.,Esaki, N. Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe J.Biol.Chem. 2009 284 25944 25952 3IE0 Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8 2009-07-22 2009-08-04 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8 To be Published 0 0 0 0 3IE2 Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8 2009-07-22 2009-08-04 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8 To be Published 0 0 0 0 2ZZW 19631222 Crystal Structure of a Periplasmic Substrate Binding Protein in Complex with Zinc and Lactate 2009-02-27 2009-08-11 Akiyama, N.,Takeda, K.,Miki, K. Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate J.Mol.Biol. 2009 392 559 565 3A0F 19682300 The crystal structure of Geotrichum sp. M128 xyloglucanase 2009-03-16 2009-09-08 Yaoi, K.,Kondo, H.,Hiyoshi, A.,Noro, N.,Sugimoto, H.,Tsuda, S.,Miyazaki, K. The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity Febs J. 2009 276 5094 5100 3A17 19740758 Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (Co-crystal) 2009-03-26 2009-09-08 Sawai, H.,Sugimoto, H.,Kato, Y.,Asano, Y.,Shiro, Y.,Aono, S. X-ray crystal structure of michaelis complex of aldoxime dehydratase J.Biol.Chem. 2009 284 32089 32096 3EIS Crystal Structure of Arylmalonate Decarboxylase 2008-09-17 2009-09-22 Nakasako, M.,Obata, R.,Miyamoto, K.,Ohta, H. Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase To be Published 0 0 0 0 3A0S 19836334 PAS domain of histidine kinase ThkA (TM1359) 2009-03-24 2009-10-20 Yamada, S.,Sugimoto, H.,Kobayashi, M.,Ohno, A.,Nakamura, H.,Shiro, Y. Structure of PAS-linked histidine kinase and the response regulator complex Structure 2009 17 1333 1344 3A0T 19836334 Catalytic domain of histidine kinase ThkA (TM1359) in complex with ADP and Mg ion (trigonal) 2009-03-24 2009-10-20 Yamada, S.,Sugimoto, H.,Kobayashi, M.,Ohno, A.,Nakamura, H.,Shiro, Y. Structure of PAS-linked histidine kinase and the response regulator complex Structure 2009 17 1333 1344 3A0X 19836334 Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 1: ammomium phosphate, monoclinic) 2009-03-25 2009-10-20 Yamada, S.,Sugimoto, H.,Kobayashi, M.,Ohno, A.,Nakamura, H.,Shiro, Y. Structure of PAS-linked histidine kinase and the response regulator complex Structure 2009 17 1333 1344 3A0Y 19836334 Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 3: 1,2-propanediol, orthorombic) 2009-03-25 2009-10-20 Yamada, S.,Sugimoto, H.,Kobayashi, M.,Ohno, A.,Nakamura, H.,Shiro, Y. Structure of PAS-linked histidine kinase and the response regulator complex Structure 2009 17 1333 1344 3A0Z 19836334 Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 4: isopropanol, orthorombic) 2009-03-25 2009-10-20 Yamada, S.,Sugimoto, H.,Kobayashi, M.,Ohno, A.,Nakamura, H.,Shiro, Y. Structure of PAS-linked histidine kinase and the response regulator complex Structure 2009 17 1333 1344 2ZXD 19967696 alpha-L-fucosidase complexed with inhibitor, iso-6FNJ 2008-12-22 2009-12-08 Wu, H.J.,Ho, C.W.,Ko, T.P.,Popat, S.D.,Lin, C.H.,Wang, A.H. Structural basis of alpha-fucosidase inhibition by iminocyclitols with K(i) values in the micro- to picomolar range. Angew.Chem.Int.Ed.Engl. 2010 49 337 340 3A0J Crystal structure of cold shock protein 1 from Thermus thermophilus HB8 2009-03-19 2010-03-23 Miyazaki, T.,Mega, R.,Kim, K.,Shikai, A.,Masui, R.,Kuramitsu, S.,Nakagawa, N. The Biological Action of Cold Shock Protein 1 from Thermus thermophilus HB8 To be Published 0 0 0 0 3AF5 20544974 The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii 2010-02-23 2010-04-21 Nishida, Y.,Ishikawa, H.,Baba, S.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Proteins 2010 78 2395 2398 3IEL Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP 2009-07-23 2010-07-28 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP To be Published 0 0 0 0 3IEM Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog 2009-07-23 2010-07-28 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog To be Published 0 0 0 0 3AD9 20675294 Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 sarcosine-reduced form 2010-01-15 2010-08-25 Moriguchi, T.,Ida, K.,Hikima, T.,Ueno, G.,Yamamoto, M.,Suzuki, H. Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96. J.Biochem. 2010 148 491 505 3AAE Crystal structure of Actin capping protein in complex with CARMIL fragment 2009-11-16 2010-11-17 Takeda, S.,Minakata, S.,Narita, A.,Kitazawa, M.,Yamakuni, T.,Maeda, Y.,Nitanai, Y. Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions To be Published 0 0 0 0 3OPF 21245531 Crystal structure of TTHA0988 in space group P212121 2010-09-01 2011-02-02 Jacques, D.A.,Langley, D.B.,Kuramitsu, S.,Yokoyama, S.,Trewhella, J.,Guss, J.M. The structure of TTHA0988 from Thermus thermophilus, a KipI-KipA homologue incorrectly annotated as an allophanate hydrolase Acta Crystallogr.,Sect.D 2011 67 105 111 3AIK 22748144 Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii 2010-05-16 2011-06-08 Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii Febs J. 2012 279 3071 3084 3AYJ 21841183 X-ray crystal structures of L-phenylalanine oxidase (deaminating and decaboxylating) from Pseudomonas sp. P501. Structures of the enzyme-ligand complex and catalytic mechanism 2011-05-07 2011-08-31 Ida, K.,Suguro, M.,Suzuki, H. High resolution X-ray crystal structures of L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. Structures of the enzyme-ligand complex and catalytic mechanism J.Biochem. 2011 150 659 669 3B09 21837652 Crystal structure of the N-domain of FKBP22 from Shewanella sp. SIB1 2011-06-07 2012-04-18 Budiman, C.,Angkawidjaja, C.,Motoike, H.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of N-domain of FKBP22 from Shewanella sp. SIB1: dimer dissociation by disruption of Val-Leu knot Protein Sci. 2011 20 1755 1764 3UNC 22145797 Crystal Structure of Bovine Milk Xanthine Dehydrogenase to 1.65A Resolution 2011-11-15 2012-05-09 Ishikita, H.,Eger, B.T.,Okamoto, K.,Nishino, T.,Pai, E.F. Protein conformational gating of enzymatic activity in xanthine oxidoreductase. J.Am.Chem.Soc. 2012 134 999 1009 3VN3 22645341 Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix 2011-12-21 2012-06-06 Kondo, H.,Hanada, Y.,Sugimoto, H.,Hoshino, T.,Garnham, C.P.,Davies, P.L.,Tsuda, S. Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation Proc.Natl.Acad.Sci.USA 2012 109 9360 9365 3U95 22093829 Crystal structure of a putative alpha-glucosidase from Thermotoga neapolitana 2011-10-17 2012-09-26 Yun, B.Y.,Jun, S.Y.,Kim, N.A.,Yoon, B.Y.,Piao, S.,Park, S.H.,Jeong, S.H.,Lee, H.,Ha, N.C. Crystal structure and thermostability of a putative alpha-glucosidase from Thermotoga neapolitana Biochem.Biophys.Res.Commun. 2011 416 92 98 3VNQ Co-crystal structure of NRPS adenylation protein CytC1 with ATP from streptomyces 2012-01-17 2013-01-23 Ueki, M.,Okumura, H.,Osada, H. Substrate recognition mechanism of NRPS adenylation protein from Streptomyces To be Published 0 0 0 0 3VNR Co-crystal structure of NRPS adenylation protein CytC1 with aminobutyric acid and AMP from streptomyces 2012-01-17 2013-01-23 Ueki, M.,Okumura, H.,Osada, H. Substrate recognition mechanism of NRPS adenylation protein from Streptomyces To be Published 0 0 0 0 3VNS Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from streptomyces 2012-01-17 2013-01-23 Ueki, M.,Okumura, H.,Osada, H. Substrate recognition mechanism of NRPS adenylation protein from Streptomyces to be published 0 0 0 0 4GQZ 24100307 Crystal Structure of S.CueP 2012-08-24 2013-08-14 Yoon, B.-Y.,Kim, Y.-H.,Kim, N.,Yun, B.-Y.,Kim, J.-S.,Lee, J.-H.,Cho, H.-S.,Lee, K.,Ha, N.-C. Structure of the periplasmic copper-binding protein CueP from Salmonella enterica serovar Typhimurium Acta Crystallogr.,Sect.D 2013 69 1867 1875 4GPC Structure of the biliverdin-HmuO, heme oxygenase from Corynebacterium diphtheriae 2012-08-20 2013-08-21 Unno, M.,Ardevol, A.,Rovira, C.,Ikeda-Saito, M. Crystal Structures of the Substrate-Free and the Product-Bound forms of HmuO, a Heme Oxygenase from Corynebacterium diphtheriae To be Published 0 0 0 0 3WVS 25258320 Crystal Structure of Cytochrome P450revI 2014-06-06 2014-10-01 Takahashi, S.,Nagano, S.,Nogawa, T.,Kanoh, N.,Uramoto, M.,Kawatani, M.,Shimizu, T.,Miyazawa, T.,Shiro, Y.,Osada, H. Structure-function analyses of cytochrome P450revI involved in reveromycin A biosynthesis and evaluation of the biological activity of its substrate, reveromycin T. J.Biol.Chem. 2014 289 32446 32458 3WTJ 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Thiacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WTL 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Nitromethylene Analogue of Imidacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WTN 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Desnitro-imidacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 4TWZ 25561575 Crystal Structure Analysis of E Coli. RecA Protein 2014-07-02 2015-07-08 Shinohara, T.,Ikawa, S.,Iwasaki, W.,Hiraki, T.,Hikima, T.,Mikawa, T.,Arai, N.,Kamiya, N.,Shibata, T. Loop L1 governs the DNA-binding specificity and order for RecA-catalyzed reactions in homologous recombination and DNA repair Nucleic Acids Res. 2015 43 973 986 5BZA 26187666 Crystal structure of CbsA from Thermotoga neapolitana 2015-06-11 2015-09-16 Kim, J.S.,Yoon, B.Y.,Ahn, J.,Cha, J.,Ha, N.C. Crystal structure of beta-N-acetylglucosaminidase CbsA from Thermotoga neapolitana Biochem.Biophys.Res.Commun. 2015 464 869 874 5B3P 27398308 Nqo5 of the trypsin-resistant fragment (1-134) in P212121 form 2016-03-09 2016-07-27 Hanazono, Y.,Takeda, K.,Miki, K. Characterization of the Nqo5 subunit of bacterial complex I in the isolated state Febs Open Bio 2016 6 687 695 5B3Q 27398308 Nqo5 of the trypsin-resistant fragment (1-134) in P63 form 2016-03-09 2016-07-27 Hanazono, Y.,Takeda, K.,Miki, K. Characterization of the Nqo5 subunit of bacterial complex I in the isolated state Febs Open Bio 2016 6 687 695 5XAX 28655765 Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta4 subunit explain its role in cell-cell adhesion 2017-03-15 2017-07-05 Shimizu, H.,Tosaki, A.,Ohsawa, N.,Ishizuka-Katsura, Y.,Shoji, S.,Miyazaki, H.,Oyama, F.,Terada, T.,Shirouzu, M.,Sekine, S.I.,Nukina, N.,Yokoyama, S. Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion J. Biol. Chem. 2017 292 13428 13440 5X70 Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer 2017-02-23 2018-02-28 Nakamichi, Y.,Higashiura, A.,Narita, H.,Hagiwara, K.,Uehara-Ichiki, T.,Omura, T.,Nakagawa, A. Crystal structure of capping enzyme from Rice dwarf virus To Be Published 0 0 0 0 8GZ5 36413757 Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain 2022-09-25 2022-12-07 Yamaguchi, K.,Anzai, I.,Maeda, R.,Moriguchi, M.,Watanabe, T.,Imura, A.,Takaori-Kondo, A.,Inoue, T. Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant. J.Biochem. 2023 173 115 127 8XSW Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Complexed with Dinotefuran 2024-01-10 2024-12-18 Ihara, M.,Matuda, K. Nicotinic receptor subunit components and ligand molecular features underlying neonicoitinoid knockdown actions on the malaria vector mosquito Anopheles gambiae To Be Published 0 0 0 0 9KUN 40464345 Crystal structure of ligand-free trypanosome alternative oxidase 2024-12-04 2025-09-10 Ebiloma, G.U.,Balogun, E.O.,Arai, N.,Otani, M.,Baldassarri, C.,Alhejely, A.,Cueto-Diaz, E.,De Koning, H.P.,Dardonville, C.,Shiba, T. Uncovering the Unusual Inhibition Mechanism of a Trypanosome Alternative Oxidase Inhibitor Displaying Broad-Spectrum Activity against African Animal Trypanosomes. J.Med.Chem. 2025 68 17155 17174 9KUN 40464345 Crystal structure of ligand-free trypanosome alternative oxidase 2024-12-04 2025-09-10 Ebiloma, G.U.,Balogun, E.O.,Arai, N.,Otani, M.,Baldassarri, C.,Alhejely, A.,Cueto-Diaz, E.,De Koning, H.P.,Dardonville, C.,Shiba, T. Uncovering the Unusual Inhibition Mechanism of a Trypanosome Alternative Oxidase Inhibitor Displaying Broad-Spectrum Activity against African Animal Trypanosomes. J.Med.Chem. 2025 68 17155 17174