PDB_ID	PUBMED_CID	STRUCTURE TITLE	DEPOSITION DATE	RELEASE DATE	AUTHORS	CITATION TITLE	JOURNAL	YEAR	VOLUME	FIRST PAGE	LAST PAGE
1GDW	11455596	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS	2000-10-06	2000-11-01	Takano, K.,Yamagata, Y.,Yutani, K.	Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme	Proteins	2001	44	233	243	
1GDX	11455596	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS	2000-10-06	2000-11-08	Takano, K.,Yamagata, Y.,Yutani, K.	Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme	Proteins	2001	44	233	243	
1GE1	11455596	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS	2000-10-06	2000-11-08	Takano, K.,Yamagata, Y.,Yutani, K.	Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme	Proteins	2001	44	233	243	
1GE3	11455596	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS	2000-10-06	2000-11-08	Takano, K.,Yamagata, Y.,Yutani, K.	Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme	Proteins	2001	44	233	243	
1GE4	11455596	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS	2000-10-06	2000-11-08	Takano, K.,Yamagata, Y.,Yutani, K.	Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme	Proteins	2001	44	233	243	
1GF8	11927576	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS	2000-12-04	2000-12-20	Funahashi, J.,Takano, K.,Yamagata, Y.,Yutani, K.	Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.	J.Biol.Chem.	2002	277	21792	21800	
1GFA	11927576	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS	2000-12-04	2000-12-20	Funahashi, J.,Takano, K.,Yamagata, Y.,Yutani, K.	Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.	J.Biol.Chem.	2002	277	21792	21800	
1GFJ	11927576	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS	2000-12-04	2000-12-20	Funahashi, J.,Takano, K.,Yamagata, Y.,Yutani, K.	Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.	J.Biol.Chem.	2002	277	21792	21800	
1GFT	11927576	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS	2000-12-04	2000-12-27	Funahashi, J.,Takano, K.,Yamagata, Y.,Yutani, K.	Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.	J.Biol.Chem.	2002	277	21792	21800	
1GFU	11927576	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS	2000-12-04	2000-12-27	Funahashi, J.,Takano, K.,Yamagata, Y.,Yutani, K.	Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.	J.Biol.Chem.	2002	277	21792	21800	
1GEG	11173520	CRYATAL STRUCTURE ANALYSIS OF MESO-2,3-BUTANEDIOL DEHYDROGENASE	2000-11-10	2001-02-28	Otagiri, M.,Kurisu, G.,Ui, S.,Takusagawa, Y.,Ohkuma, M.,Kudo, T.,Kusunoki, M.	Crystal structure of meso-2,3-butanediol dehydrogenase in a complex with NAD+ and inhibitor mercaptoethanol at 1.7 A resolution for understanding of chiral substrate recognition mechanisms.	J.Biochem.	2001	129	205	208	
1GEF	11286886	Crystal structure of the archaeal holliday junction resolvase HJC	2000-11-08	2001-03-21	Nishino, T.,Komori, K.,Tsuchiya, D.,Ishino, Y.,Morikawa, K.	Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.	Structure	2001	9	197	204	
1IQQ	11577107	Crystal Structure of Japanese pear S3-RNase	2001-07-25	2001-11-07	Matsuura, T.,Sakai, H.,Unno, M.,Ida, K.,Sato, M.,Sakiyama, F.,Norioka, S.	Crystal structure at 1.5-A resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility.	J.Biol.Chem.	2001	276	45261	45269	
1IP2	11599030	G48A HUMAN LYSOZYME	2001-04-20	2001-11-14	Takano, K.,Yamagata, Y.,Yutani, K.	Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein.	Proteins	2001	45	274	280	
1IP3	11599030	G68A HUMAN LYSOZYME	2001-04-20	2001-11-14	Takano, K.,Yamagata, Y.,Yutani, K.	Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein.	Proteins	2001	45	274	280	
1IP4	11599030	G72A HUMAN LYSOZYME	2001-04-20	2001-11-14	Takano, K.,Yamagata, Y.,Yutani, K.	Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein.	Proteins	2001	45	274	280	
1IQR	11707580	Crystal structure of DNA photolyase from Thermus thermophilus	2001-07-27	2001-11-28	Komori, H.,Masui, R.,Kuramitsu, S.,Yokoyama, S.,Shibata, T.,Inoue, Y.,Miki, K.	Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.	Proc.Natl.Acad.Sci.USA	2001	98	13560	13565	
1EID	11742124	CRYSTAL STRUCTURE OF F120G MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A	2000-02-25	2002-02-13	Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T.	Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.	Protein Sci.	2002	11	72	81	
1FS3	11742124	CRYSTAL STRUCTURE OF WILD-TYPE BOVINE PANCREATIC RIBONUCLEASE A	2000-09-08	2002-02-13	Chatani, E.,Hayashi, R.,Moriyama, H.,Ueki, T.	Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.	Protein Sci.	2002	11	72	81	
1IQZ	11827483	OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)	2001-08-30	2002-02-13	Fukuyama, K.,Okada, T.,Kakuta, Y.,Takahashi, Y.	Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.	J.Mol.Biol.	2002	315	1155	1166	
1IQA	11733492	CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MOUSE RANK LIGAND	2001-07-11	2002-03-13	Ito, S.,Wakabayashi, K.,Ubukata, O.,Hayashi, S.,Okada, F.,Hata, T.	Crystal structure of the extracellular domain of mouse RANK ligand at 2.2-A resolution.	J.Biol.Chem.	2002	277	6631	6636	
1ISR	11867751	Crystal Structure of Metabotropic Glutamate Receptor Subtype 1 Complexed with Glutamate and Gadolinium Ion	2001-12-21	2002-03-13	Tsuchiya, D.,Kunishima, N.,Kamiya, N.,Jingami, H.,Morikawa, K.	Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.	Proc.Natl.Acad.Sci.USA	2002	99	2660	2665	
1IUA	12077426	Ultra-high resolution structure of HiPIP from Thermochromatium tepidum	2002-03-01	2002-03-20	Liu, L.,Nogi, T.,Kobayashi, M.,Nozawa, T.,Miki, K.	Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum.	Acta Crystallogr.,Sect.D	2002	58	1085	1091	
1JVA	11884132	CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES	2001-08-29	2002-08-29	Mizutani, R.,Nogami, S.,Kawasaki, M.,Ohya, Y.,Anraku, Y.,Satow, Y.	Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.	J.Mol.Biol.	2002	316	919	929	
1KWG	12215416	Crystal structure of Thermus thermophilus A4 beta-galactosidase	2002-01-29	2002-09-18	Hidaka, M.,Fushinobu, S.,Ohtsu, N.,Motoshima, H.,Matsuzawa, H.,Shoun, H.,Wakagi, T.	Trimeric Crystal Structure of the Glycoside Hydrolase Family 42 beta-Galactosidase from Thermus thermophilus A4 and the Structure of its Complex with Galactose	J.MOL.BIOL.	2002	322	79	91	
1IWP	12230560	Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae	2002-05-28	2002-10-02	Yamanishi, M.,Yunoki, M.,Tobimatsu, T.,Sato, H.,Matsui, J.,Dokiya, A.,Iuchi, Y.,Oe, K.,Suto, K.,Shibata, N.,Morimoto, Y.,Yasuoka, N.,Toraya, T.	The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol.	Eur.J.Biochem.	2002	269	4484	4494	
1IXZ	12377127	Crystal structure of the FtsH ATPase domain from Thermus thermophilus	2002-07-10	2002-11-06	Niwa, H.,Tsuchiya, D.,Makyio, H.,Yoshida, M.,Morikawa, K.	Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8	Structure	2002	10	1415	1423	
1IVJ	12235152	Crystal Structure of Rat Hemeoxygenase-1 in Complex with Heme and Azide.	2002-03-18	2002-12-11	Sugishima, M.,Sakamoto, H.,Omata, Y.,Hayashi, S.,Noguchi, M.,Fukuyama, K.	Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme Bound to Azide. IMPLICATION FOR REGIOSPECIFIC HYDROXYLATION OF HEME AT THE alpha -MESO CARBON	J.Biol.Chem.	2002	277	45086	45090	
1IV5	12437138	New Crystal Form of Human CD81 Large Extracellular Loop.	2002-03-14	2003-01-28	Kitadokoro, K.,Ponassi, M.,Galli, G.,Petracca, R.,Falugi, F.,Grandi, G.,Bolognesi, M.	Subunit Association and Conformational Flexibility in the Head-subdomain of Human CD81 Large Extracellular Loop.	Biol.Chem.	2002	383	1447	1452	
1J0H	12547200	Crystal structure of Bacillus stearothermophilus neopullulanase	2002-11-14	2003-01-28	Hondoh, H.,Kuriki, T.,Matsuura, Y.	Three-dimensional Structure and Substrate Binding of Bacillus stearothermophilus Neopullulanase	J.Mol.Biol.	2003	326	177	188	
1J0I	12547200	Crystal structure of neopullulanase complex with panose	2002-11-14	2003-01-28	Hondoh, H.,Kuriki, T.,Matsuura, Y.	Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase	J.Mol.Biol.	2003	326	177	188	
1J0J	12547200	Crystal structure of neopullulanase E357Q complex with maltotetraose	2002-11-14	2003-01-28	Hondoh, H.,Kuriki, T.,Matsuura, Y.	Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase	J.Mol.Biol.	2003	326	177	188	
1J0K	12547200	Crystal structure of neopullulanase E357Q complex with isopanose	2002-11-14	2003-01-28	Hondoh, H.,Kuriki, T.,Matsuura, Y.	Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase	J.Mol.Biol.	2003	326	177	188	
1N5X	12421831	Xanthine Dehydrogenase from Bovine Milk with Inhibitor TEI-6720 Bound	2002-11-07	2003-03-18	Okamoto, K.,Eger, B.T.,Nishino, T.,Kondo, S.,Pai, E.F.,Nishino, T.	An Extremely Potent Inhibitor of Xanthine Oxidoreductase: Crystal Structure of the Enzyme-Inhibitor Complex and Mechanism of Inhibition	J.BIOL.CHEM.	2003	278	1848	1855	
1UCG	12731868	Crystal structure of Ribonuclease MC1 N71T mutant	2003-04-14	2003-04-29	Numata, T.,Suzuki, A.,Kakuta, Y.,Kimura, K.,Yao, M.,Tanaka, I.,Yoshida, Y.,Ueda, T.,Kimura, M.	Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity	Biochemistry	2003	42	5270	5278	
1IZ1	12706716	CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR	2002-09-18	2003-05-06	Muraoka, S.,Okumura, R.,Ogawa, N.,Nonaka, T.,Miyashita, K.,Senda, T.	Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend	J.Mol.Biol.	2003	328	555	556	
1J0A	15328614	Crystal Structure Analysis of the ACC deaminase homologue	2002-11-12	2003-05-12	Fujino, A.,Ose, T.,Yao, M.,Tokiwano, T.,Honma, M.,Watanabe, N.,Tanaka, I.	Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii	J.Mol.Biol.	2004	341	999	1013	
1IXC	12706716	Crystal structure of CbnR, a LysR family transcriptional regulator	2002-06-18	2003-06-18	Muraoka, S.,Okumura, R.,Ogawa, N.,Nonaka, T.,Miyashita, K.,Senda, T.	Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend	J.Mol.Biol.	2003	328	555	566	
1M53	12819210	CRYSTAL STRUCTURE OF ISOMALTULOSE SYNTHASE (PALI) FROM KLEBSIELLA SP. LX3	2002-07-08	2003-07-08	Zhang, D.,Li, N.,Lok, S.M.,Zhang, L.-H.,Swaminathan, K.	Isomaltulose synthase (PalI) of Klebsiella sp. LX3. Crystal structure and implication of mechanism	J.Biol.Chem.	2003	278	35428	35434	
1IX0	12646687	I59A-3SS human lysozyme	2002-06-06	2003-07-22	Takano, K.,Yamagata, Y.,Yutani, K.	Buried water molecules contribute to the conformational stability of a protein	PROTEIN ENG.	2003	16	5	9	
1UD4	12719434	Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution)	2003-04-28	2003-07-22	Nonaka, T.,Fujihashi, M.,Kita, A.,Hagihara, H.,Ozaki, K.,Ito, S.,Miki, K.	Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites	J.Biol.Chem.	2003	278	24818	24824	
1IX3	12924938	Crystal Structure of Rat Heme Oxygenase-1 in complex with Heme bound to Cyanide	2002-06-10	2003-09-02	Sugishima, M.,Sakamoto, H.,Noguchi, M.,Fukuyama, K.	Crystal Structures of Ferrous and CO-, CN(-)-, and NO-Bound Forms of Rat Heme Oxygenase-1 (HO-1) in Complex with Heme: Structural Implications for Discrimination between CO and O(2) in HO-1.	Biochemistry	2003	42	9898	9905	
1IUQ	14684887	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase	2002-03-06	2003-10-07	Tamada, T.,Feese, M.D.,Ferri, S.R.,Kato, Y.,Yajima, R.,Toguri, T.,Kuroki, R.	Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.	Acta Crystallogr.,Sect.D	2004	60	13	21	
1UIN	12952961	Crystal Structure of Threonine Synthase from Thermus Thermophilus HB8, Trigonal Crystal Form	2003-07-17	2003-11-18	Omi, R.,Masaru, G.,Miyahara, I.,Mizuguchi, H.,Hayashi, H.,Kagamiyama, H.,Hirotsu, K.	Crystal Structures of Threonine Synthase from Thermus thermophilus HB8: Conformational change, substrate recognition, and mechanism.	J.BIOL.CHEM.	2003	278	46035	46045	
1UCQ	14672661	Crystal structure of the L intermediate of bacteriorhodopsin	2003-04-17	2003-12-30	Kouyama, T.,Nishikawa, T.,Tokuhisa, T.,Okumura, H.	Crystal Structure of the L Intermediate of Bacteriorhodopsin: Evidence for Vertical Translocation of a Water Molecule during the Proton Pumping Cycle.	J.Mol.Biol.	2004	335	531	546	
1V7C	12952961	Crystal structure of threonine synthase from thermus thermophilus hb8 in complex with a substrate analogue	2003-12-16	2003-12-30	Omi, R.,Goto, M.,Miyahara, I.,Mizuguchi, H.,Hayashi, H.,Kagamiyama, H.,Hirotsu, K.	Crystal structures of threonine synthase from Thermus thermophilus HB8: conformational change, substrate recognition, and mechanism.	J.Biol.Chem.	2003	278	46035	46045	
1J1T		Alginate lyase from Alteromonas sp.272	2002-12-14	2004-02-03	Motoshima, H.,Iwatomo, Y.,Watanabe, K.,Oda, T.,Muramatsu, T.	Crystal structure of Alginate Lyase from Alteromonas sp.272	To be published	0	0	0	0	
1VCR	15103124	An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes	2004-03-10	2004-03-30	Hino, T.,Kanamori, E.,Shen, J.R.,Kouyama, T.	An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes.	Acta Crystallogr.,Sect.D	2004	60	803	809	
1RGY	14660590	Citrobacter freundii GN346 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime	2003-11-13	2004-04-06	Nukaga, M.,Kumar, S.,Nukaga, K.,Pratt, R.F.,Knox, J.R.	Hydrolysis of third-generation cephalosporins by class C beta-lactamases. Structures of a transition state analog of cefotoxamine in wild-type and extended spectrum enzymes.	J.Biol.Chem.	2004	279	9344	9352	
1WCZ		Crystal structure of an alkaline form of v8 protease from Staphylococcus aureus	2004-05-10	2004-06-01	Yamada, K.,Ohta, M.,Hasegawa, T.,Torii, K.,Murakami, M.,Kouyama, K.	Crystal structure of an alkaline form of v8 protease from Staphylococcus aureus	To be Published	0	0	0	0	
1UGQ	14717710	Crystal structure of apoenzyme of Co-type nitrile hydratase	2003-06-17	2004-06-17	Miyanaga, A.,Fushinobu, S.,Ito, K.,Shoun, H.,Wakagi, T.	Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding	Eur.J.Biochem.	2004	271	429	438	
1UGS	14717710	Crystal structure of aY114T mutant of Co-type nitrile hydratase	2003-06-17	2004-06-17	Miyanaga, A.,Fushinobu, S.,Ito, K.,Shoun, H.,Wakagi, T.	Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding	Eur.J.Biochem.	2004	271	429	438	
1V4X	15117955	Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0	2003-11-19	2004-07-06	Yokoyama, T.,Chong, K.T.,Miyazaki, G.,Morimoto, H.,Shih, D.T.,Unzai, S.,Tame, J.R.,Park, S.Y.	Novel Mechanisms of pH Sensitivity in Tuna Hemoglobin: A STRUCTURAL EXPLANATION OF THE ROOT EFFECT	J.Biol.Chem.	2004	279	28632	28640	
1UMG	15274916	Crystal structure of fructose-1,6-bisphosphatase	2003-09-30	2004-07-13	Nishimasu, H.,Fushinobu, S.,Shoun, H.,Wakagi, T.	The first crystal structure of the novel class of fructose-1,6-bisphosphatase present in thermophilic archaea.	Structure	2004	12	949	959	
1WDM	15229654	fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native3)	2004-05-17	2004-07-27	Ishikawa, M.,Tsuchiya, D.,Oyama, T.,Tsunaka, Y.,Morikawa, K.	Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex	Embo J.	2004	23	2745	2754	
1V4F	15386273	Crystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3A	2003-11-13	2004-08-03	Okuyama, K.,Hongo, C.,Fukushima, R.,Wu, G.,Narita, H.,Noguchi, K.,Tanaka, Y.,Nishino, N.	Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering	Biopolymers	2004	76	367	377	
1V6Q	15386273	Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.3 A	2003-12-03	2004-08-03	Okuyama, K.,Hongo, C.,Fukushima, R.,Wu, G.,Narita, H.,Noguchi, K.,Tanaka, Y.,Nishino, N.	Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering	Biopolymers	2004	76	367	377	
1WMD	15342641	Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)	2004-07-08	2004-09-14	Nonaka, T.,Fujihashi, M.,Kita, A.,Saeki, K.,Ito, S.,Horikoshi, K.,Miki, K.	The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain	J.Biol.Chem.	2004	279	47344	47351	
1WMF	15342641	Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom)	2004-07-08	2004-09-14	Nonaka, T.,Fujihashi, M.,Kita, A.,Saeki, K.,Ito, S.,Horikoshi, K.,Miki, K.	The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain	J.Biol.Chem.	2004	279	47344	47351	
1UM2	14646148	Crystal Structure of the Vma1-Derived Endonuclease with the Ligated Extein Segment	2003-09-22	2004-09-22	Mizutani, R.,Anraku, Y.,Satow, Y.	Protein splicing of yeast VMA1-derived endonuclease via thiazolidine intermediates.	J.Synchrotron Radiat.	2004	11	109	112	
1P7O	15720395	Crystal structure of phospholipase A2 (MIPLA4) from Micropechis ikaheka	2003-05-05	2004-09-28	Lok, S.M.,Gao, R.,Rouault, M.,Lambeau, G.,Gopalakrishnakone, P.,Swaminathan, K.	Structure and function comparison of Micropechis ikaheka snake venom phospholipase A2 isoenzymes	FEBS J.	2005	272	1211	1220	
1ULI	15342255	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1	2003-09-12	2004-09-28	Furusawa, Y.,Nagarajan, V.,Tanokura, M.,Masai, E.,Fukuda, M.,Senda, T.	Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1	J.Mol.Biol.	2004	342	1041	1052	
1XQD	15313618	Crystal structure of P450NOR complexed with 3-pyridinealdehyde adenine dinucleotide	2004-10-12	2004-10-26	Oshima, R.,Fushinobu, S.,Su, F.,Zhang, L.,Takaya, N.,Shoun, H.	Structural evidence for direct hydride transfer from NADH to cytochrome P450nor	J.Mol.Biol.	2004	342	207	217	
1V40	15113825	First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase	2003-11-07	2004-11-07	Inoue, T.,Okano, Y.,Kado, Y.,Aritake, K.,Irikura, D.,Uodome, N.,Okazaki, N.,Kinugasa, S.,Shishitani, H.,Matsumura, H.,Kai, Y.,Urade, Y.	First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.	J.Biochem.(Tokyo)	2004	135	279	283	
1WS8	15858169	Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)	2004-11-02	2004-11-23	Xie, Y.,Inoue, T.,Miyamoto, Y.,Matsumura, H.,Kataoka, K.,Yamaguchi, K.,Nojini, M.,Suzuki, S.,Kai, Y.	Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.	J.Biochem.(Tokyo)	2005	137	455	461	
1VDV	15190124	Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form	2004-03-25	2004-12-21	Fukunari, A.,Okamoto, K.,Nishino, T.,Eger, B.T.,Pai, E.F.,Kamezawa, M.,Yamada, I.,Kato, N.	Y-700 [1-[3-Cyano-4-(2,2-dimethylpropoxy)phenyl]-1H-pyrazole-4-carboxylic acid]: a potent xanthine oxidoreductase inhibitor with hepatic excretion	J.Pharmacol.Exp.Ther.	2004	311	519	528	
1V6C		Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11	2003-11-28	2004-12-28	Dong, D.,Ihara, T.,Motoshima, H.,Watanabe, K.	Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11	To be Published	0	0	0	0	
1UJ8	15937904	Structures of ORF3 in Two Crystal Forms, a Member of Isc Machinery of E. coli Involved in the Assembly of Iron-Sulfur Clusters	2003-07-29	2005-02-15	Shimomura, Y.,Takahashi, Y.,Kakuta, Y.,Fukuyama, K.	Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.	Proteins	2005	60	566	569	
1S2M	15987810	Crystal Structure of the DEAD box protein Dhh1p	2004-01-09	2005-03-01	Cheng, Z.,Coller, J.,Parker, R.,Song, H.	Crystal structure and functional analysis of DEAD-box protein Dhh1p.	Rna	2005	11	1258	1270	
1WMI	15768033	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3	2004-07-09	2005-03-15	Takagi, H.,Kakuta, Y.,Okada, T.,Yao, M.,Tanaka, I.,Kimura, M.	Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects	Nat.Struct.Mol.Biol.	2005	12	327	331	
1XMM	15769464	Structure of human Dcps bound to m7GDP	2004-10-04	2005-03-22	Chen, N.,Walsh, M.A.,Liu, Y.,Parker, R.,Song, H.	Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping.	J.Mol.Biol.	2005	347	707	718	
1WQL	15774891	Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01	2004-09-30	2005-03-29	Dong, X.,Fushinobu, S.,Fukuda, E.,Terada, T.,Nakamura, S.,Shimizu, K.,Nojiri, H.,Omori, T.,Shoun, H.,Wakagi, T.	Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01	J.BACTERIOL.	2005	187	2483	2490	
1WUP	15788415	Crystal structure of metallo-beta-lactamase IMP-1 mutant (D81E)	2004-12-08	2005-03-29	Yamaguchi, Y.,Kuroki, T.,Yasuzawa, H.,Higashi, T.,Jin, W.,Kawanami, A.,Yamagata, Y.,Arakawa, Y.,Goto, M.,Kurosaki, H.	Probing the role of Asp-120(81) of metallo-beta-lactamase (IMP-1) by site-directed mutagenesis, kinetic studies, and X-ray crystallography.	J.Biol.Chem.	2005	280	20824	20832	
1VCZ		Crystal structure of the RNase NT in complex with 5'-GMP	2004-03-17	2005-04-26	Kawano, S.,Kakuta, Y.,Kimura, M.	Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates	to be published	0	0	0	0	
1X1U		Water-mediate interaction at aprotein-protein interface	2005-04-13	2005-04-26	Ikura, T.,Urakubo, Y.,Ito, N.	Water-mediated interaction at a protein-protein interface	Chem.Phys.	2004	307	111	119	
1X1X		Water-mediate interaction at aprotein-protein interface	2005-04-15	2005-04-26	Ikura, T.,Urakubo, Y.,Ito, N.	Water-mediated interaction at a protein-protein interface	Chem.Phys.	2004	307	111	119	
1T91	15933719	crystal structure of human small GTPase Rab7(GTP)	2004-05-14	2005-05-17	Wu, M.,Wang, T.,Loh, E.,Hong, W.,Song, H.	Structural basis for recruitment of RILP by small GTPase Rab7.	Embo J.	2005	24	1491	1501	
1X0P	15876364	Structure of a cyanobacterial BLUF protein, Tll0078	2005-03-27	2005-06-07	Kita, A.,Okajima, K.,Morimoto, Y.,Ikeuchi, M.,Miki, K.	Structure of a Cyanobacterial BLUF Protein, Tll0078, Containing a Novel FAD-binding Blue Light Sensor Domain	J.Mol.Biol.	2005	349	1	9	
1X1K	15929160	Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4	2005-04-05	2005-06-14	Jiravanichanun, N.,Hongo, C.,Wu, G.,Noguchi, K.,Okuyama, K.,Nishino, N.,Silva, T.	Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence	Chembiochem	2005	6	1184	1187	
1YXJ	15939022	Crystal structure of human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1) at low pH	2005-02-22	2005-06-14	Ohki, I.,Ishigaki, T.,Oyama, T.,Matsunaga, S.,Xie, Q.,Ohnishi-Kameyama, M.,Murata, T.,Tsuchiya, D.,Machida, S.,Morikawa, K.,Tate, S.	Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.	Structure	2005	13	905	917	
2CUO	16091587	Collagen model peptide (PRO-PRO-GLY)9	2005-05-27	2005-06-14	Hongo, C.,Noguchi, K.,Okuyama, K.,Tanaka, Y.,Nishino, N.	Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3	J.Biochem.(Tokyo)	2005	138	135	144	
1XWR	16061804	Crystal structure of the coliphage lambda transcription activator protein CII	2004-11-02	2005-06-21	Datta, A.B.,Panjikar, S.,Weiss, M.S.,Chakrabarti, P.,Parrack, P.	Structure of {lambda} CII: Implications for recognition of direct-repeat DNA by an unusual tetrameric organization	Proc.Natl.Acad.Sci.USA	2005	102	11242	11247	
1WKV	16005886	Crystal structure of O-phosphoserine sulfhydrylase	2004-06-09	2005-06-28	Oda, Y.,Mino, K.,Ishikawa, K.,Ataka, M.	Three-dimensional Structure of a New Enzyme, O-Phosphoserine Sulfhydrylase, involved in l-Cysteine Biosynthesis by a Hyperthermophilic Archaeon, Aeropyrum pernix K1, at 2.0A Resolution	J.Mol.Biol.	2005	351	334	344	
1WLK	17261542	L122E mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)	2004-06-28	2005-07-19	Kitamura, M.,Terakawa, K.,Inoue, H.,Hayashida, T.,Suto, K.,Morimoto, Y.,Yasuoka, N.,Shibata, N.,Higuchi, Y.	Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.	J.Biochem.	2007	141	459	468	
1WMW		Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus	2004-07-21	2005-07-21	Suto, K.,Nishio, K.,Nodake, Y.,Hamada, K.,Kawamoto, M.,Nakagawa, N.,Kuramitu, S.,Miura, K.	Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus	To be Published	0	0	0	0	
1X1S	15994326	Crystal structure of M-Ras in complex with GppNHp	2005-04-13	2005-07-26	Ye, M.,Shima, F.,Muraoka, S.,Liao, J.,Okamoto, H.,Yamamoto, M.,Tamura, A.,Yagi, N.,Ueki, T.,Kataoka, T.	Crystal Structure of M-Ras Reveals a GTP-bound ""Off"" State Conformation of Ras Family Small GTPases	J.Biol.Chem.	2005	280	31267	31275	
1WSC		Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii	2004-11-05	2005-11-08	Murayama, T.,Tanaka, Y.,Sasaki, T.,Yasutake, Y.,Yao, M.,Tsumoto, K.,Tanaka, I.,Kumagai, I.	Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii	To be Published	0	0	0	0	
1WSS	16510984	Human Factor Viia-Tissue Factor in Complex with peptide-mimetic inhibitor that has two charged groups in P2 and P4	2004-11-10	2005-11-10	Kadono, S.,Sakamoto, A.,Kikuchi, Y.,Oh-Eda, M.,Yabuta, N.,Koga, T.,Hattori, K.,Shiraishi, T.,Haramura, M.,Kodama, H.,Ono, Y.,Esaki, T.,Sato, H.,Watanabe, Y.,Itoh, S.,Ohta, M.,Kozono, T.	Structure of human factor VIIa/tissue factor in complex with a peptide-mimetic inhibitor: high selectivity against thrombin by introducing two charged groups in P2 and P4.	Acta Crystallogr.,Sect.F	2005	61	169	173	
1WUJ	16271886	Three-Dimensional Structure Of The Ni-B State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F	2004-12-07	2005-12-07	Ogata, H.,Hirota, S.,Nakahara, A.,Komori, H.,Shibata, N.,Kato, T.,Kano, K.,Higuchi, Y.	Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state	Structure	2005	13	1635	1642	
1WVT	17492665	Crystal structure of uncharacterized protein ST2180 from Sulfolobus tokodaii	2004-12-27	2006-01-03	Tanaka, Y.,Sasaki, T.,Kumagai, I.,Yasutake, Y.,Yao, M.,Tanaka, I.,Tsumoto, K.	Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii	Proteins	2007	68	446	457	
2CZR	16322571	Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA	2005-07-15	2006-02-14	Yamamoto, T.,Matsuda, T.,Inoue, T.,Matsumura, H.,Morikawa, M.,Kanaya, S.,Kai, Y.	Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA	Protein Sci.	2006	15	152	161	
2D60	16403522	Crystal structure of deoxy human hemoglobin complexed with two L35 molecules	2005-11-08	2006-03-07	Yokoyama, T.,Neya, S.,Tsuneshige, A.,Yonetani, T.,Park, S.Y.,Tame, J.R.	R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35	J.Mol.Biol.	2006	356	790	801	
1Y9Z		Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution	2004-12-16	2006-03-21	Dong, D.,Watanabe, K.	Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution	To be Published	0	0	0	0	
2D01	16533035	Wild Type Photoactive Yellow Protein, P65 Form	2005-07-21	2006-04-04	Shimizu, N.,Kamikubo, H.,Yamazaki, Y.,Imamoto, Y.,Kataoka, M.	The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein	Biochemistry	2006	45	3542	3547	
2D02	16533035	R52Q Mutant of Photoactive Yellow Protein, P65 Form	2005-07-21	2006-04-04	Shimizu, N.,Kamikubo, H.,Yamazaki, Y.,Imamoto, Y.,Kataoka, M.	The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein	Biochemistry	2006	45	3542	3547	
1WVW		Crystal structures of kinase domain of DAP kinase in complex with small molecular inhibitors	2004-12-27	2006-04-11	Ueda, Y.,Ogata, H.,Yamakawa, A.,Higuchi, Y.	Crystal structure of kinase domain of DAP kinase	To be Published	0	0	0	0	
1WVY		Crystal structures of kinase domain of DAP kinase in complex with small molecular inhibitors	2004-12-27	2006-04-11	Ueda, Y.,Ogata, H.,Yamakawa, A.,Higuchi, Y.	Complex structure of kinase domain of DAP kinase with Staurosporine	To be Published	0	0	0	0	
2CZW	16574071	Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P	2005-07-19	2006-04-25	Fukuhara, H.,Kifusa, M.,Watanabe, M.,Terada, A.,Honda, T.,Numata, T.,Kakuta, Y.,Kimura, M.	A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3	Biochem.Biophys.Res.Commun.	2006	343	956	964	
1X10	16752900	Structure of Mutant Pyrrolidone Carboxyl Peptidase (E192A) from a Hyperthermophile, Pyrococcus furiosus	2005-03-31	2006-06-13	Kaushik, J.K.,Iimura, S.,Ogasahara, K.,Yamagata, Y.,Segawa, S.,Yutani, K.	Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.	Biochemistry	2006	45	7100	7112	
1X12	16752900	Structure of Mutant Pyrrolidone Carboxyl Peptidase (E192D) from a Hyperthermophile, Pyrococcus furiosus	2005-03-31	2006-06-13	Kaushik, J.K.,Iimura, S.,Ogasahara, K.,Yamagata, Y.,Segawa, S.,Yutani, K.	Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.	Biochemistry	2006	45	7100	7112	
1Z8W	16752900	Structure of Mutant Pyrrolidone Carboxyl Peptidase (E192I) from a Hyperthermophile, Pyrococcus furiosus	2005-03-31	2006-06-13	Kaushik, J.K.,Iimura, S.,Ogasahara, K.,Yamagata, Y.,Segawa, S.,Yutani, K.	Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.	Biochemistry	2006	45	7100	7112	
1Z8X	16752900	Structure of Mutant Pyrrolidone Carboxyl Peptidase (E192V) from a Hyperthermophile, Pyrococcus furiosus	2005-03-31	2006-06-13	Kaushik, J.K.,Iimura, S.,Ogasahara, K.,Yamagata, Y.,Segawa, S.,Yutani, K.	Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.	Biochemistry	2006	45	7100	7112	
2FGZ	16650854	Crystal Structure Analysis of apo pullulanase from Klebsiella pneumoniae	2005-12-23	2006-06-13	Mikami, B.,Iwamoto, H.,Malle, D.,Yoon, H.-J.,Demirkan-Sarikaya, E.,Mezaki, Y.,Katsuya, Y.	Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site	J.Mol.Biol.	2006	359	690	707	
1X1C	16797589	Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn2+	2005-04-03	2006-07-18	Wada, K.,Yamaguchi, H.,Harada, J.,Niimi, K.,Osumi, S.,Saga, Y.,Oh-Oka, H.,Tamiaki, H.,Fukuyama, K.	Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.	J.Mol.Biol.	2006	360	839	849	
2D10	16615918	Crystal structure of the Radixin FERM domain complexed with the NHERF-1 C-terminal tail peptide	2005-08-11	2006-07-18	Terawaki, S.,Maesaki, R.,Hakoshima, T.	Structural basis for NHERF recognition by ERM proteins	Structure	2006	14	777	789	
2DT5	17154156	Crystal Structure of TTHA1657 (AT-rich DNA-binding protein) from Thermus thermophilus HB8	2006-07-11	2007-01-02	Nakamura, A.,Sosa, A.,Komori, H.,Kita, A.,Miki, K.	Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution	Proteins	2007	66	755	759	
2DRT	17373653	Structure Analysis of (POG)4-LOG-(POG)5	2006-06-14	2007-04-24	Okuyama, K.,Narita, H.,Kawaguchi, T.,Noguchi, K.,Tanaka, Y.,Nishino, N.	Unique side chain conformation of a leu residue in a triple-helical structure	Biopolymers	2007	86	212	221	
2V1S	17948058	CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX	2007-05-29	2007-06-12	Saitoh, T.,Igura, M.,Obita, T.,Ose, T.,Kojima, R.,Maenaka, K.,Endo, T.,Kohda, D.	Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States.	Embo J.	2007	26	4777	0	
2V1T	17948058	CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX	2007-05-29	2007-06-12	Saitoh, T.,Igura, M.,Obita, T.,Ose, T.,Kojima, R.,Maenaka, K.,Endo, T.,Kohda, D.	Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States.	Embo J.	2007	26	4777	0	
2DZP		Structure of mutant tryptophan synthase alpha-subunit (D17N) from a hyperthermophile, Pyrococcus furiosus	2006-09-30	2007-08-28	Ogasahara, K.,Yamagata, Y.,Yutani, K.	Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus	To be Published	0	0	0	0	
3BDJ	18600558	Crystal Structure of Bovine Milk Xanthine Dehydrogenase with a Covalently Bound Oxipurinol Inhibitor	2007-11-14	2008-11-25	Okamoto, K.,Eger, B.T.,Nishino, T.,Pai, E.F.,Nishino, T.	Mechanism of inhibition of xanthine oxidoreductase by allopurinol: crystal structure of reduced bovine milk xanthine oxidoreductase bound with oxipurinol.	Nucleosides Nucleotides Nuclei	2008	27	888	893	
2ZWH	19158791	Model for the F-actin structure	2008-12-05	2009-01-20	Oda, T.,Iwasa, M.,Aihara, T.,Maeda, Y.,Narita, A.	The nature of the globular- to fibrous-actin transition.	Nature	2009	457	441	445	
2ZWH	19158791	Model for the F-actin structure	2008-12-05	2009-01-20	Oda, T.,Iwasa, M.,Aihara, T.,Maeda, Y.,Narita, A.	The nature of the globular- to fibrous-actin transition.	Nature	2009	457	441	445	
3A20	17261542	L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)	2009-04-27	2009-05-19	Kitamura, M.,Terakawa, K.,Inoue, H.,Hayashida, T.,Suto, K.,Morimoto, Y.,Yasuoka, N.,Shibata, N.,Higuchi, Y.	Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis	J.Biochem.	2007	141	459	468	
3A6U	19864691	Crystal structure of MutT-8-OXO-dGMP-MN(II) complex	2009-09-09	2009-10-27	Nakamura, T.,Meshitsuka, S.,Kitagawa, S.,Abe, N.,Yamada, J.,Ishino, T.,Nakano, H.,Tsuzuki, T.,Doi, T.,Kobayashi, Y.,Fujii, S.,Sekiguchi, M.,Yamagata, Y.	Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base	J.Biol.Chem.	2010	285	444	452	
3A0A		Structure of (PPG)4-OPG-(PPG)4, monoclinic, twinned crystal	2009-03-13	2010-03-09	Okuyama, K.,Morimoto, T.,Hongo, C.,Tanaka, Y.,Nishino, N.	Crystal structure of (PPG)4-OPG-(PPG)4	To be Published	0	0	0	0	
3VGB	22334583	Crystal structure of glycosyltrehalose trehalohydrolase (GTHase) from Sulfolobus solfataricus KM1	2011-08-09	2012-06-20	Okazaki, N.,Tamada, T.,Feese, M.D.,Kato, M.,Miura, Y.,Komeda, T.,Kobayashi, K.,Kondo, K.,Blaber, M.,Kuroki, R.	Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.	Protein Sci.	2012	21	539	552	
3VGF	22334583	Crystal structure of glycosyltrehalose trehalohydrolase (D252S) complexed with maltotriosyltrehalose	2011-08-09	2012-06-20	Okazaki, N.,Tamada, T.,Feese, M.D.,Kato, M.,Miura, Y.,Komeda, T.,Kobayashi, K.,Kondo, K.,Blaber, M.,Kuroki, R.	Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.	Protein Sci.	2012	21	539	552	
3WN8	24615532	Crystal Structure of Collagen-Model Peptide, (POG)3-PRG-(POG)4	2013-12-06	2014-08-13	Okuyama, K.,Haga, M.,Noguchi, K.,Tanaka, T.	Preferred side-chain conformation of arginine residues in a triple-helical structure.	Biopolymers	2014	101	1000	1009	
3WGP		Crystal Structure Analysis of Vitamin D receptor	2013-08-07	2014-08-27	Itoh, S.,Iijima, S.	Crystal Structure Analysis of Vitamin D receptor	to be published	0	0	0	0	
3WVS	25258320	Crystal Structure of Cytochrome P450revI	2014-06-06	2014-10-01	Takahashi, S.,Nagano, S.,Nogawa, T.,Kanoh, N.,Uramoto, M.,Kawatani, M.,Shimizu, T.,Miyazawa, T.,Shiro, Y.,Osada, H.	Structure-function analyses of cytochrome P450revI involved in reveromycin A biosynthesis and evaluation of the biological activity of its substrate, reveromycin T.	J.Biol.Chem.	2014	289	32446	32458	
4ZOH	26808202	Crystal structure of glyceraldehyde oxidoreductase	2015-05-06	2016-02-03	Wakagi, T.,Nishimasu, H.,Miyake, M.,Fushinobu, S.	Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities through Unique Subunit Assemblies.	Plos One	2016	11	0	0	
5YCQ	29083032	Unique Specificity-Enhancing Factor for the AAA+ Lon Protease	2017-09-08	2018-04-11	Abe, Y.,Shioi, S.,Kita, S.,Nakata, H.,Maenaka, K.,Kohda, D.,Katayama, T.,Ueda, T.	X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation	FEBS Lett.	2017	591	3805	3816