PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1V7R 18062990 Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3 2003-12-22 2003-12-30 Lokanath, N.K.,Pampa, K.J.,Takio, K.,Kunishima, N. Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes. J.Mol.Biol. 2008 375 1013 1025 1V8G Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8 2004-01-08 2004-01-20 Shimizu, K.,Kunishima, N. Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8 To be Published 0 0 0 0 1V2Z 15170179 Crystal structure of the C-terminal domain of Thermosynechococcus elongatus BP-1 KaiA 2003-10-20 2004-06-01 Uzumaki, T.,Fujita, M.,Nakatsu, T.,Hayashi, F.,Shibata, H.,Itoh, N.,Kato, H.,Ishiura, M. Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein NAT.STRUCT.MOL.BIOL. 2004 11 623 631 1V8W 15210687 Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant, complexed with SO4 and Zn 2004-01-15 2004-10-19 Yoshiba, S.,Ooga, T.,Nakagawa, N.,Shibata, T.,Inoue, Y.,Yokoyama, S.,Kuramitsu, S.,Masui, R. Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem. 2004 279 37163 37174 1WGB Crystal structure of a probable flavoprotein from Thermus thermophilus HB8 2004-05-28 2004-11-28 Imagawa, T.,Tsuge, H.,Utsunomiya, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a probable flavoprotein from Thermus thermophilus HB8 To be Published 0 0 0 0 1WJ9 16672237 Crystal structure of a CRISPR-associated protein from thermus thermophilus 2004-05-29 2004-11-29 Ebihara, A.,Yao, M.,Masui, R.,Tanaka, I.,Yokoyama, S.,Kuramitsu, S. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain Protein Sci. 2006 15 1494 1499 1WJ9 16672237 Crystal structure of a CRISPR-associated protein from thermus thermophilus 2004-05-29 2004-11-29 Ebihara, A.,Yao, M.,Masui, R.,Tanaka, I.,Yokoyama, S.,Kuramitsu, S. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain Protein Sci. 2006 15 1494 1499 1WJG Crystal structure of a probable ATP binding protein from thermus themophilus HB8 2004-05-29 2004-11-29 Iino, H.,Yao, M.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a probable atp binding protein from thermus themophilus HB8 To be Published 0 0 0 0 1WK2 Crystal structure of a hypothetical protein from thermus thermophilus HB8 2004-05-30 2004-11-30 Agari, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a hypothetical protein from thermus thermophilus HB8 To be Published 0 0 0 0 1WKC Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8 2004-05-31 2004-12-01 Yanai, H.,Tsuge, H.,Utsunomiya, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8 To be Published 0 0 0 0 1V98 Crystal Structure Analysis of Thioredoxin from Thermus thermophilus 2004-01-21 2005-02-01 Rehse, P.H.,Tahirov, T.H. Crystallographic Analysis of Thioredoxin from the Thermophilic Bacteria Thermus thermophilus To be Published 0 0 0 0 1WNF Crystal Structure of PH0066 from Pyrococcus horikoshii 2004-08-02 2005-02-02 Ihsanawati,Sekine, S.,Murayama, K.,Sugawara, M.,Shirouzu, M.,Yokoyama, S. Crystal Structure of PH0066 from Pyrococcus horikoshii To be Published 0 0 0 0 1WOK 15733846 Crystal structure of catalytic domain of human poly(ADP-ribose) polymerase complexed with a quinoxaline-type inhibitor 2004-08-20 2005-03-15 Iwashita, A.,Hattori, K.,Yamamoto, H.,Ishida, J.,Kido, Y.,Kamijo, K.,Murano, K.,Miyake, H.,Kinoshita, T.,Warizaya, M.,Ohkubo, M.,Matsuoka, N.,Mutoh, S. Discovery of quinazolinone and quinoxaline derivatives as potent and selective poly(ADP-ribose) polymerase-1/2 inhibitors. Febs Lett. 2005 579 1389 1393 1WYI 16511037 human triosephosphate isomerase of new crystal form 2005-02-14 2005-04-12 Kinoshita, T.,Maruki, R.,Warizaya, M.,Nakajima, H.,Nishimura, S. Structure of a high-resolution crystal form of human triosephosphate isomerase: improvement of crystals using the gel-tube method. Acta Crystallogr.,Sect.F 2005 61 346 349 1WQS 16227288 Crystal structure of Norovirus 3C-like protease 2004-10-01 2005-10-04 Nakamura, K.,Someya, Y.,Kumasaka, T.,Ueno, G.,Yamamoto, M.,Sato, T.,Takeda, N.,Miyamura, T.,Tanaka, N. A norovirus protease structure provides insights into active and substrate binding site integrity J.Virol. 2005 79 13685 13693 2CVB Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8 2005-06-01 2005-12-01 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2CVE Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 2005-06-02 2005-12-02 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 To be Published 0 0 0 0 2CVJ Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8 2005-06-04 2005-12-04 Kashihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8 To be Published 0 0 0 0 2CVK Crystal Structure of Thermus thermophilus Thioredoxin 2005-06-04 2005-12-04 Yanai, H.,Yokoyama, S.,Kuramitsu, S. Crystal Structure of a Reduced Thioredoxin from Thermus thermophilus HB8 To be Published 0 0 0 0 2D4R 16511226 Crystal structure of TTHA0849 from Thermus thermophilus HB8 2005-10-23 2005-12-13 Nakabayashi, M.,Shibata, N.,Komori, H.,Ueda, Y.,Iino, H.,Ebihara, A.,Kuramitsu, S.,Higuchi, Y. Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily. Acta Crystallogr.,Sect.F 2005 61 1027 1031 2CW5 Crystal structure of a conserved hypothetical protein from Thermus thermophilus HB8 2005-06-16 2005-12-16 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of a conserved hypothetical protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2CWA Crystal Structure Of The Single-stranded DNA Binding Protein From Thermus Thermophilus HB8 2005-06-17 2005-12-17 Satoh, S.,Yokoyama, S.,Kuramitsu, S. Crystal Structure Of The Single-stranded DNA Binding Protein From Thermus Thermophilus HB8 To be Published 0 0 0 0 2CWL Crystal structure of manganese-free form of pseudocatalase from Thermus thermophilus HB8 2005-06-21 2005-12-21 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Structural and functional analysis of pseudocatalase from Thermus thermophilus HB8 To be Published 0 0 0 0 2CX6 Crystal structure of ribonuclease inhibitor Barstar 2005-06-28 2005-12-28 Murayama, K.,Kawazoe, M.,Shirouzu, M.,Yokoyama, S. Crystal structure of ribonuclease inhibitor Barstar To be Published 0 0 0 0 2CX7 Crystal structure of sterol carrier protein 2 2005-06-28 2005-12-28 Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of sterol carrier protein 2 To be Published 0 0 0 0 2CX8 Crystal structure of methyltransferase with ligand(SAH) 2005-06-28 2005-12-28 Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of methyltransferase with ligand(SAH) To be Published 0 0 0 0 2CX9 Crystal structure of acyl-CoA dehydrogenase 2005-06-28 2005-12-28 Murayama, K.,Kinebuchi, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of acyl-CoA dehydrogenase To be Published 0 0 0 0 2CXX Crystal structure of a probable GTP-binding protein engB 2005-07-01 2006-01-01 Kukimoto-Niino, M.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of a probable GTP-binding protein engB To be Published 0 0 0 0 1X2J 16507366 Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2 2005-04-25 2006-03-07 Padmanabhan, B.,Tong, K.I.,Ohta, T.,Nakamura, Y.,Scharlock, M.,Ohtsuji, M.,Kang, M.-I.,Kobayashi, A.,Yokoyama, S.,Yamamoto, M. Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer Mol.Cell 2006 21 689 700 2D3K 18391411 Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3 2005-09-29 2006-03-29 Shimizu, K.,Kuroishi, C.,Sugahara, M.,Kunishima, N. Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state. Acta Crystallogr.,Sect.D 2008 64 444 453 1ZAB 16784234 Crystal Structure of Mouse Cytidine Deaminase Complexed with 3-Deazauridine 2005-04-06 2006-04-11 Teh, A.H.,Kimura, M.,Yamamoto, M.,Tanaka, N.,Yamaguchi, I.,Kumasaka, T. The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse Biochemistry 2006 45 7825 7833 2CU3 Crystal structure of TT1568 from Thermus thermophilus HB8 2005-05-25 2006-05-23 Sugahara, M.,Satoh, S.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Kunishima, N. Crystal structure of TT1568 from Thermus thermophilus HB8 To be Published 0 0 0 0 2D7U Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3 2005-11-29 2006-05-29 Xie, Y.,Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 2DBI Crystal Structure of a Hypothetical Protein JW0805 from Escherichia coli 2005-12-15 2006-06-15 Ihsanawati,Murayama, K.,Bessho, Y.,Shirouzu, M.,Yokoyama, S. Crystal Structure of a Hypothetical Protein JW0805 from Escherichia coli To be published 0 0 0 0 2DBN Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli 2005-12-15 2006-06-15 Ihsanawati,Murayama, K.,Bessho, Y.,Shirouzu, M.,Yokoyama, S. Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli To be published 0 0 0 0 2DBY Crystal structure of the GTP-binding protein YchF in complexed with GDP 2005-12-16 2006-06-16 Kukimoto-Niino, M.,Murayama, K.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the GTP-binding protein YchF in complexed with GDP To be Published 0 0 0 0 2DC5 Crystal structure of mouse glutathione S-transferase, mu7 (GSTM7) at 1.6 A resolution 2005-12-28 2006-06-28 Kamo, S.,Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of mouse glutathione S-transferase, mu7 (GSTM7) at 1.6 A resolution To be Published 0 0 0 0 2FR5 16784234 Crystal Structure of Mouse Cytidine Deaminase Complexed with Tetrahydrouridine 2006-01-19 2006-07-11 Teh, A.H.,Kimura, M.,Yamamoto, M.,Tanaka, N.,Yamaguchi, I.,Kumasaka, T. The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse Biochemistry 2006 45 7825 7833 2DJW 16946463 Crystal structure of TTHA0845 from Thermus thermophilus HB8 2006-04-05 2006-09-12 Nakano, N.,Okazaki, N.,Satoh, S.,Takio, K.,Kuramitsu, S.,Shinkai, A.,Yokoyama, S. Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8 ACTA CRYSTALLOGR.,SECT.F 2006 62 855 860 2DJW 16946463 Crystal structure of TTHA0845 from Thermus thermophilus HB8 2006-04-05 2006-09-12 Nakano, N.,Okazaki, N.,Satoh, S.,Takio, K.,Kuramitsu, S.,Shinkai, A.,Yokoyama, S. Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8 ACTA CRYSTALLOGR.,SECT.F 2006 62 855 860 2CYY Crystal structure of PH1519 from Pyrococcus horikosii OT3 2005-07-08 2006-09-19 Okazaki, N.,Nakano, N.,Shinkai, A.,Yokoyama, S. Crystal structure of PH1519 from Pyrococcus horikosii OT3 To be Published 0 0 0 0 2CZ8 Crystal Structure of tt0972 protein from Thermus thermophilus 2005-07-11 2006-09-19 Kumei, M.,Inagaki, E.,Nakano, N.,Shinkai, A.,Yokoyama, S. Crystal Structure of tt0972 protein from Thermus thermophilus To be Published 0 0 0 0 2CZ9 Crystal Structure of galactokinase from Pyrococcus horikoshi 2005-07-12 2006-09-26 Inagaki, E.,Sakamoto, K.,Shinkai, A.,Yokoyama, S. Crystal Structure of galactokinase from Pyrococcus horikoshi To be Published 0 0 0 0 2DC0 Crystal structure of amidase 2005-12-17 2007-01-02 Ohshima, T.,Sakuraba, H.,Ebihara, A.,Kanagawa, M.,Nakagawa, N.,Kuroishi, C.,Satoh, S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of amidase To be Published 0 0 0 0 2CB1 Crystal Structure of O-actetyl Homoserine Sulfhydrylase From Thermus Thermophilus HB8,OAH2. 2005-12-28 2007-01-03 Imagawa, T.,Utsunomiya, H.,Agari, Y.,Satoh, S.,Tsuge, H. The Crystal Structure of O-Acetyl Homoserine Sulfhydrylase To be Published 0 0 0 0 2DTC Crystal structure of MS0666 2006-07-12 2007-01-12 Wang, H.,Kishishita, S.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of MS0666 To be Published 0 0 0 0 2DUK Crystal structure of MS0616 2006-07-24 2007-01-24 Hosaka, T.,Nishino, A.,Uchikubo, K.-T.,Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of MS0616 To be Published 0 0 0 0 2DUL 18789948 Crystal structure of tRNA G26 methyltransferase Trm1 in apo form from Pyrococcus horikoshii 2006-07-24 2007-01-24 Ihsanawati,Nishimoto, M.,Higashijima, K.,Shirouzu, M.,Grosjean, H.,Bessho, Y.,Yokoyama, S. Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol. 2008 383 871 884 2DUL 18789948 Crystal structure of tRNA G26 methyltransferase Trm1 in apo form from Pyrococcus horikoshii 2006-07-24 2007-01-24 Ihsanawati,Nishimoto, M.,Higashijima, K.,Shirouzu, M.,Grosjean, H.,Bessho, Y.,Yokoyama, S. Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol. 2008 383 871 884 2DVL Crystal structure of project TT0160 from Thermus thermophilus HB8 2006-07-31 2007-01-31 Shimizu, K.,Kunishima, N. Crystal structure of TT0160 from Thermus thermophilus HB8 To be Published 0 0 0 0 2D8N Crystal structure of human recoverin at 2.2 A resolution 2005-12-07 2007-02-20 Kamo, S.,Kishishita, S.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Crystal structure of human recoverin at 2.2 A resolution To be Published 0 0 0 0 2DYK Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8 2006-09-14 2007-03-14 Kawazoe, M.,Takemoto, C.,Fusatomi, E.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8 to be published 0 0 0 0 2DSY 17329807 Crystal structure of TTHA0281 from thermus thermophilus HB8 2006-07-07 2007-03-27 Okazaki, N.,Kumei, M.,Manzoku, M.,Kuramitsu, S.,Shirouzu, M.,Shinkai, A.,Yokoyama, S. Structure of a UPF0150-family protein from Thermus thermophilus HB8 ACTA CRYSTALLOGR.,SECT.F 2007 63 173 177 2EEZ Crystal structure of alanine dehydrogenase from themus thermophilus 2007-02-19 2007-04-13 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal structure of alanine dehydrogenase from themus thermophilus To be Published 0 0 0 0 2EF0 Crystal structure of ornithine carbamoyltransferase from thermus thermophilus 2007-02-19 2007-04-13 Karthe, P.,Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ornithine carbamoyltransferase from thermus thermophilus To be Published 0 0 0 0 2EF4 Crystal structure of the arginase from thermus thermophilus 2007-02-20 2007-04-14 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the arginase from thermus thermophilus To be Published 0 0 0 0 2EF5 Crystal structure of the arginase from thermus thermophilus 2007-02-20 2007-04-14 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the arginase from thermus thermophilus To be Published 0 0 0 0 2DEG Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions 2006-02-10 2007-05-01 Inagaki, E.,Nakano, N.,Shinkai, A.,Yokoyama, S. Crystal structure of tt0972 protein form Thermus Thermophilus To be Published 0 0 0 0 2DEH Crystal structure of tt0972 protein form Thermus Thermophilus with Cl(-) ions 2006-02-10 2007-05-01 Inagaki, E.,Nakano, N.,Shinkai, A.,Yokoyama, S. Crystal structure of tt0972 protein form Thermus Thermophilus To be Published 0 0 0 0 2DEV Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions 2006-02-17 2007-05-01 Inagaki, E.,Nakano, N.,Shinkai, A.,Yokoyama, S. Crystal structure of tt0972 protein from Thermus Thermophilus To be Published 0 0 0 0 2EHH Crystal structure of dihydrodipicolinate synthase from aquifex aeolicus 2007-03-06 2007-05-01 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal structure of dihydrodipicolinate synthase from aquifex aeolicus To be Published 0 0 0 0 2DX8 Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus 2006-08-24 2007-05-15 Nakamura, Y.,Umehara, T.,Hamana, H.,Hayashizaki, Y.,Inoue, M.,Kigawa, T.,Shirouzu, M.,Terada, T.,Tanaka, A.,Padmanabhan, B.,Yokoyama, S. Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published 0 0 0 0 2E3V Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4 2006-11-30 2007-06-05 Saijo, S.,Nishino, A.,Kishishita, S.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Yokoyama, S. Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4 To be Published 0 0 0 0 2PX7 Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase from Thermus thermophilus HB8 2007-05-14 2007-06-12 Chen, L.,Tsukuda, M.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Chen, L.-Q.,Liu, Z.-J.,Lee, D.,Chang, S.-H.,Nguyen, D.,Rose, J.P.,Wang, B.-C. Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase from Thermus thermophilus HB8. To be Published 0 0 0 0 2DT8 Fatty Acid Binding of a DegV family Protein from Thermus thermophilus 2006-07-11 2007-06-19 Rehse, P.H.,Yokoyama, S. Fatty Acid Binding of a DegV family Protein from Thermus thermophilus To be Published 0 0 0 0 2E4M 17581814 Crystal structure of hemagglutinin subcomponent complex (HA-33/HA-17) from Clostridium botulinum serotype D strain 4947 2006-12-13 2007-06-19 Hasegawa, K.,Watanabe, T.,Suzuki, T.,Yamano, A.,Oikawa, T.,Sato, Y.,Kouguchi, H.,Yoneyama, T.,Niwa, K.,Ikeda, T.,Ohyama, T. A Novel Subunit Structure of Clostridium botulinum Serotype D Toxin Complex with Three Extended Arms J.Biol.Chem. 2007 282 24777 24783 2E67 18177738 Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 2006-12-26 2007-06-26 Imagawa, T.,Iino, H.,Kanagawa, M.,Ebihara, A.,Kuramitsu, S.,Tsuge, H. Crystal structure of the YdjC-family protein TTHB029 from Thermus thermophilus HB8: structural relationship with peptidoglycan N-acetylglucosamine deacetylase. Biochem.Biophys.Res.Commun. 2008 367 535 541 2E67 18177738 Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 2006-12-26 2007-06-26 Imagawa, T.,Iino, H.,Kanagawa, M.,Ebihara, A.,Kuramitsu, S.,Tsuge, H. Crystal structure of the YdjC-family protein TTHB029 from Thermus thermophilus HB8: structural relationship with peptidoglycan N-acetylglucosamine deacetylase. Biochem.Biophys.Res.Commun. 2008 367 535 541 2E7U Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Thermus thermophilus HB8 2007-01-14 2007-07-17 Mizutani, H.,Kunishima, N. Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Thermus thermophilus HB8 To be Published 0 0 0 0 2E87 Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP 2007-01-19 2007-07-24 Kukimoto-Niino, M.,Bessho, M.,Shirouzu, M.,Yokoyama, S. Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP To be Published 0 0 0 0 2DWB Aurora-A kinase complexed with AMPPNP 2006-08-10 2007-07-31 Kukimoto-Niino, M.,Murayama, K.,Shirouzu, M.,Yokoyama, S. Aurora-A kinase complexed with AMPPNP To be Published 0 0 0 0 2EA9 Crystal structure of a hypothetical protein JW2626 from E.coli 2007-01-31 2007-07-31 Okazaki, N.,Kuramitsu, S.,Yamamoto, M.,Yokoyama, S. Crystal structure of a hypothetical protein JW2626 from E.coli To be Published 0 0 0 0 2EB0 Crystal structure of Methanococcus jannaschii putative family II inorganic pyrophosphatase 2007-02-05 2007-08-07 Shimada, A.,Kuramitsu, S.,Yokoyama, S. Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase To be Published 0 0 0 0 2DUY Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8 2006-07-27 2007-08-14 Niwa, H.,Shimada, A.,Chen, L.,Liu, Z.-J.,Wang, B.-C.,Ebihara, A.,Yokoyama, S. Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2EBD Crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase III from Aquifex aeolicus VF5 2007-02-08 2007-08-14 Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase III from Aquifex aeolicus VF5 To be Published 0 0 0 0 2EBE Crystal structure of Lys11 to Met mutant of hypothetical protein from Thermus thermophilus 2007-02-08 2007-08-14 Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of Lys11 to Met mutant of hypothetical protein from Thermus thermophilus To be Published 0 0 0 0 2EBJ Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus 2007-02-08 2007-08-14 Kumarevel, T.S.,Karthe, P.,Agari, Y.,Kuramitsu, S.,Yokoyama, S. Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus To be Published 0 0 0 0 2EBY Crystal structure of a hypothetical protein from E. Coli 2007-02-09 2007-08-14 Karthe, P.,Kumarevel, T.S.,Ebihara, S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of a hypothetical protein from E. Coli To be Published 0 0 0 0 2EF7 18691556 Crystal structure of ST2348, a hypothetical protein with CBS domains from Sulfolobus tokodaii strain7 2007-02-21 2007-08-21 Ragunathan, P.,Kumarevel, T.,Agari, Y.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Ponnuraj, K. Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii Biochem.Biophys.Res.Commun. 2008 375 124 128 2OWK Crystal structure of PH0725 from Pyrococcus horikoshii OT3 2007-02-16 2007-08-21 Sugahara, M.,Matsuura, Y.,Ono, N.,Nakamoto, T.,Kunishima, N. Crystal structure of PH0725 from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 2EFV 27845039 Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii 2007-02-26 2007-08-28 Thiruselvam, V.,Kumarevel, T.,Karthe, P.,Kuramitsu, S.,Yokoyama, S.,Ponnuswamy, M.N. Crystal structure analysis of a hypothetical protein (MJ0366) from Methanocaldococcus jannaschii revealed a novel topological arrangement of the knot fold Biochem. Biophys. Res. Commun. 2017 482 264 269 2OZP Crystal structure of N-acetyl-gamma-glutamyl-phosphate reductase (TTHA1904) from Thermus thermophilus 2007-02-27 2007-08-28 Rehse, P.H.,Yokoyama, S. Crystal structure of N-acetyl-gamma-glutamyl-phosphate reductase (TTHA1904) from Thermus thermophilus To be Published 0 0 0 0 2DX0 Crystal structure of the N-terminal SH2 domain of mouse phospholipase C-gamma 2 2006-08-22 2007-09-04 Takagi, T.,Handa, N.,Murayama, K.,Shirouzu, M.,Kurosaki, T.,Terada, T.,Yokoyama, S. Crystal structure of the N-terminal SH2 domain of mouse phospholipase C-gamma 2 To be Published 0 0 0 0 2EGI Crystal Structure of a Hypothetical Protein(AQ1494) from Aquifex aeolicus 2007-03-01 2007-09-04 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of a Hypothetical Protein(AQ1494) from Aquifex aeolicus To be Published 0 0 0 0 2EGJ Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus 2007-03-01 2007-09-04 Kumarevel, T.S.,Niwa, H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus To be Published 0 0 0 0 2EGR Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus 2007-03-02 2007-09-04 Kumarevel, T.S.,Niwa, H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus To be Published 0 0 0 0 2EGT Crystal Structure of Hypothetical protein (AQ1549) from Aquifex aeolicus 2007-03-02 2007-09-04 Niwa, H.,Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Hypothetical protein (AQ1549) from Aquifex aeolicus To be Published 0 0 0 0 2EGZ Crystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5 2007-03-02 2007-09-04 Karthe, P.,Kumarevel, T.S.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5 To be Published 0 0 0 0 2EH3 Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5 2007-03-03 2007-09-04 Agari, Y.,Shinkai, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5 To be Published 0 0 0 0 2EHP Crystal Structure of a Putative protein (AQ1627) from Aquifex aeolicus 2007-03-07 2007-09-11 Kumarevel, T.S.,Karthe, P.,Nakano, N.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of a Putative protein (AQ1627) from Aquifex aeolicus To be Published 0 0 0 0 2EHW Conserved hypothetical proteim (TTHB059) from Thermo thermophilus HB8 2007-03-09 2007-09-11 Rehse, P.H.,Yokoyama, S. Conserved hypothetical proteim (TTHB059) from Thermo thermophilus HB8 To be Published 0 0 0 0 2DYQ Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3 2006-09-16 2007-09-18 Saijo, S.,Nishino, A.,Kishishita, S.,Shirouzu, M.,Yokoyama, S. Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3 To be Published 0 0 0 0 2EI5 Crystal Structure of Hypothetical protein(TTHA0061) from Thermus thermophilus 2007-03-12 2007-09-18 Niwa, H.,Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Hypothetical protein(TTHA0061) from Thermus thermophilus To be Published 0 0 0 0 2EIU Crystal Structure of a Putative protein (AQ1627) from Aquifex aeolicus 2007-03-13 2007-09-18 Kumarevel, T.S.,Karthe, P.,Nakano, N.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of a Putative protein (AQ1627) from Aquifex aeolicus To be Published 0 0 0 0 2EIV Crystal Structure of the arginase from Thermus thermophilus 2007-03-13 2007-09-18 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of the arginase from Thermus thermophilus To be Published 0 0 0 0 2EJ5 Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus 2007-03-15 2007-09-18 Okazaki, N.,Agari, Y.,Ebihara, A.,Chen, L.,Fu, Z.Q.,Chrzas, J.,Wang, B.C.,Kuramitsu, S.,Yamamoto, M.,Yokoyama, S. Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus To be Published 0 0 0 0 2EJQ Conserved hypothetical protein (TTHA0227) from Thermo thermophilus HB8 2007-03-20 2007-09-25 Rehse, P.H.,Yokoyama, S. Conserved hypothetical protein (TTHA0227) from Thermo thermophilus HB8 To be Published 0 0 0 0 2EJQ Conserved hypothetical protein (TTHA0227) from Thermo thermophilus HB8 2007-03-20 2007-09-25 Rehse, P.H.,Yokoyama, S. Conserved hypothetical protein (TTHA0227) from Thermo thermophilus HB8 To be Published 0 0 0 0 2EJT 18789948 Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Methionine 2007-03-20 2007-09-25 Ihsanawati,Nishimoto, M.,Higashijima, K.,Shirouzu, M.,Grosjean, H.,Bessho, Y.,Yokoyama, S. Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol. 2008 383 871 884 2EJU 18789948 Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Homocystein 2007-03-20 2007-09-25 Ihsanawati,Nishimoto, M.,Higashijima, K.,Shirouzu, M.,Grosjean, H.,Bessho, Y.,Yokoyama, S. Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii J.Mol.Biol. 2008 383 871 884 2EJZ Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (Y11M) 2007-03-22 2007-09-25 Asada, Y.,Taketa, M.,Ono, N.,Matsuura, Y.,Kunishima, N. Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (Y11M) To be Published 0 0 0 0 2IDE Crystal Structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8 2006-09-15 2007-09-25 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Baba, S.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal Structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8 To be Published 0 0 0 0 2IEX Crystal structure of dihydroxynapthoic acid synthetase (GK2873) from Geobacillus kaustophilus HTA426 2006-09-19 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,BaBa, S.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of dihydroxynapthoic acid synthetase (GK2873) from Geobacillus kaustophilus HTA426 To be Published 0 0 0 0 2P9X Crystal structure of PH0832 from Pyrococcus horikoshii OT3 2007-03-26 2007-10-02 Sugahara, M.,Kunishima, N. Crystal structure of PH0832 from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 2PBP Crystal structure of ENOYL-CoA hydrates subunit I (gk_2039) from geobacillus kaustophilus HTA426 2007-03-29 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki, R.C.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of ENOYL-CoA hydrates subunit I (gk_2039) from geobacillus kaustophilus HTA426 To be Published 0 0 0 0 2PBQ Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5 2007-03-29 2007-10-02 Jeyakanthan, J.,Mahesh, S.,Kanaujia, S.P.,Ramakumar, S.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5 to be published 0 0 0 0 2PBR Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 2007-03-29 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 To be Published 0 0 0 0 2PCL Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5 2007-03-30 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Rafi, Z.A.,Sekar, K.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5 To be Published 0 0 0 0 2PCQ Crystal structure of putative dihydrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8 2007-03-30 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Kitamura, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of putative dihydrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8 To be Published 0 0 0 0 2YR0 Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 2007-04-01 2007-10-02 Kagawa, W.,Kurumizaka, H.,Yokoyama, S. Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 To be published 0 0 0 0 2III Crystal structure of the adenosylmethionine decarboxylase (aq_254) from aquifex aeolicus vf5 2006-09-28 2007-10-09 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Baba, S.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of the adenosylmethionine decarboxylase (aq_254) from aquifex aeolicus vf5 To be Published 0 0 0 0 2YRX 20716513 Crystal structure of GAR synthetase from Geobacillus kaustophilus 2007-04-03 2007-10-09 Sampei, G.,Baba, S.,Kanagawa, M.,Yanai, H.,Ishii, T.,Kawai, H.,Fukai, Y.,Ebihara, A.,Nakagawa, N.,Kawai, G. Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem. 2010 148 429 438 2YS6 20716513 Crystal structure of GAR synthetase from Geobacillus kaustophilus 2007-04-03 2007-10-09 Sampei, G.,Baba, S.,Kanagawa, M.,Yanai, H.,Ishii, T.,Kawai, H.,Fukai, Y.,Ebihara, A.,Nakagawa, N.,Kawai, G. Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem. 2010 148 429 438 2YUT Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8 2007-04-06 2007-10-09 Agari, Y.,Shinkai, A.,Kuramitsu, S. Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8 To be Published 0 0 0 0 2YUT Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8 2007-04-06 2007-10-09 Agari, Y.,Shinkai, A.,Kuramitsu, S. Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8 To be Published 0 0 0 0 2YV3 Crystal Structure of Aspartate Semialdehyde Dehydrogenase from Thermus thermophilus HB8 2007-04-07 2007-10-09 Kagawa, W.,Fujikawa, N.,Kurumizaka, H.,Bessho, Y.,Ellis, M.J.,Antonyuk, S.V.,Strange, R.W.,Hasnain, S.S.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Aspartate Semialdehyde Dehydrogenase from Thermus thermophilus HB8 To be Published 0 0 0 0 2YV4 Crystal Structure of C-terminal Sua5 Domain from Pyrococcus horikoshii Hypothetical Sua5 Protein PH0435 2007-04-09 2007-10-09 Agari, Y.,Shinkai, A.,Kuramitsu, S. Crystal Structure of C-terminal Sua5 Domain from Pyrococcus horikoshii Hypothetical Sua5 Protein PH0435 To be Published 0 0 0 0 2DYC Crystal structure of the N-terminal domain of mouse galectin-4 2006-09-08 2007-10-16 Kato-Murayama, M.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of the N-terminal domain of mouse galectin-4 To be Published 0 0 0 0 2YVT Crystal structure of aq_1956 2007-04-15 2007-10-16 Ishii, R.,Bessho, Y.,Yokoyama, S. Crystal structure of aq_1956 To be Published 0 0 0 0 2YVU Crystal structure of APE1195 2007-04-15 2007-10-16 Ishii, R.,Bessho, Y.,Yokoyama, S. Crystal structure of APE1195 To be published 0 0 0 0 2YW2 20716513 Crystal structure of GAR synthetase from Aquifex aeolicus in complex with ATP 2007-04-19 2007-10-23 Sampei, G.,Baba, S.,Kanagawa, M.,Yanai, H.,Ishii, T.,Kawai, H.,Fukai, Y.,Ebihara, A.,Nakagawa, N.,Kawai, G. Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem. 2010 148 429 438 2YWA Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-04-20 2007-10-23 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2YWI Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus 2007-04-20 2007-10-23 Manzoku, M.,Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus to be published 0 0 0 0 2YWL Crystal structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8 2007-04-20 2007-10-23 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8 To be Published 0 0 0 0 2YWM Crystal structure of glutaredoxin-like protein from Aquifex aeolicus 2007-04-20 2007-10-23 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of glutaredoxin-like protein from Aquifex aeolicus To be Published 0 0 0 0 2YWN Crystal structure of peroxiredoxin-like protein from Sulfolobus tokodaii 2007-04-20 2007-10-23 Ebihara, A.,Manzoku, M.,Fujimoto, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of peroxiredoxin-like protein from Sulfolobus tokodaii To be Published 0 0 0 0 2YWO Crystal structure of reduced thioredoxin-like protein from Thermus thermophilus HB8 2007-04-20 2007-10-23 Ebihara, A.,Manzoku, M.,Yokoyama, S.,Kuramitsu, S. Crystal structure of reduced thioredoxin-like protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2YWV Crystal structure of SAICAR synthetase from Geobacillus kaustophilus 2007-04-23 2007-10-23 Kanagawa, M.,Baba, S.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of SAICAR synthetase from Geobacillus kaustophilus To be Published 0 0 0 0 2IRP Crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979) from aquifex aeolicus VF5 2006-10-16 2007-10-30 Jeyakanthan, J.,Gayathri, D.,Yogavel, M.,Velmurugan, D.,Baba, S.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979) from aquifex aeolicus VF5 To be Published 0 0 0 0 2IS8 Crystal structure of the Molybdopterin biosynthesis enzyme MoaB (TTHA0341) from thermus theromophilus HB8 2006-10-16 2007-10-30 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Baba, S.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of the molybdopterin biosynthesis enzyme MoaB (TTHA0341) from thermus theromophilus HB8 To be Published 0 0 0 0 2YXB Crystal structure of the methylmalonyl-CoA mutase alpha-subunit from Aeropyrum pernix 2007-04-25 2007-10-30 Handa, N.,Bessho, Y.,Yokoyama, S. Crystal structure of the methylmalonyl-CoA mutase alpha-subunit from Aeropyrum pernix To be Published 0 0 0 0 2YXH Crystal structure of mazG-related protein from Thermotoga maritima 2007-04-26 2007-10-30 Padmanabhan, B.,Bessho, Y.,Yokoyama, S. Crystal structure of mazG-related protein from Thermotoga maritima To be Published 0 0 0 0 2YXX Crystal structure analysis of Diaminopimelate decarboxylate (lysA) 2007-04-27 2007-10-30 Nakamura, Y.,Bessho, Y.,Padmanabhan, B.,Yokoyama, S. Crystal structure analysis of Diaminopimelate decarboxylate (lysA) To be Published 0 0 0 0 2YY6 Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5 2007-04-27 2007-10-30 Tanaka, T.,Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5 To be Published 0 0 0 0 2YYA 20716513 Crystal structure of GAR synthetase from Aquifex aeolicus 2007-04-27 2007-10-30 Sampei, G.,Baba, S.,Kanagawa, M.,Yanai, H.,Ishii, T.,Kawai, H.,Fukai, Y.,Ebihara, A.,Nakagawa, N.,Kawai, G. Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria J.Biochem. 2010 148 429 438 2YYH Crystal structure of Nudix family protein from Aquifex aeolicus 2007-04-30 2007-11-06 Nakakaga, N.,Kishishita, S.,Yokoyama, S.,Kuramitsu, S. Crystal structure of Nudix family protein from Aquifex aeolicus To be Published 0 0 0 0 2YYT Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus 2007-05-02 2007-11-06 Kanagawa, M.,Baba, S.,Nakamura, Y.,Bessho, Y.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus To be Published 0 0 0 0 2YYU Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus 2007-05-02 2007-11-06 Kanagawa, M.,Baba, S.,Nakamura, Y.,Bessho, Y.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus To be Published 0 0 0 0 2YYV Crystal structure of uncharacterized conserved protein from Thermotoga maritima 2007-05-02 2007-11-06 Nakagawa, N.,Nakamura, Y.,Bessho, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermotoga maritima To be Published 0 0 0 0 2YZG Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 2007-05-05 2007-11-06 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 To be Published 0 0 0 0 2YZI Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii 2007-05-06 2007-11-06 Kanagawa, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii To be Published 0 0 0 0 2YZJ Crystal structure of dCTP deaminase from Sulfolobus tokodaii 2007-05-06 2007-11-06 Kanagawa, M.,Baba, S.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of dCTP deaminase from Sulfolobus tokodaii To be Published 0 0 0 0 2YZK Crystal structure of orotate phosphoribosyltransferase from Aeropyrum pernix 2007-05-06 2007-11-06 Kanagawa, M.,Baba, S.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of orotate phosphoribosyltransferase from Aeropyrum pernix To be Published 0 0 0 0 2YZL Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii 2007-05-06 2007-11-06 Kanagawa, M.,Baba, S.,Fukui, K.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii To be Published 0 0 0 0 2YZM Structure of D-Alanine:D-Alanine Ligase with substrate from Thermus thermophilus HB8 2007-05-06 2007-11-06 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Structure of D-Alanine:D-Alanine Ligase with substrate from Thermus thermophilus HB8 To be Published 0 0 0 0 2YZN Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8. 2007-05-06 2007-11-06 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8 To be Published 0 0 0 0 2YZQ Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii 2007-05-06 2007-11-06 Kanagawa, M.,Minami, Y.,Watanabe, N.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii To be Published 0 0 0 0 2YZS Crystal structure of uncharacterized conserved protein from Aquifex aeolicus 2007-05-06 2007-11-06 Ebihara, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Aquifex aeolicus To be Published 0 0 0 0 2YZT 18338381 Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-05-06 2007-11-06 Ebihara, A.,Manzoku, M.,Iino, H.,Kanagawa, M.,Shinkai, A.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins. Proteins 2008 71 2097 2101 2YZV ADP-ribosylglycohydrolase-related protein complex 2007-05-06 2007-11-06 Ebihara, A.,Manzoku, M.,Yokoyama, S.,Kuramitsu, S. ADP-ribosylglycohydrolase-related protein complex To be Published 0 0 0 0 2YZW ADP-ribosylglycohydrolase-related protein complex 2007-05-06 2007-11-06 Ebihara, A.,Manzoku, M.,Yokoyama, S.,Kuramitsu, S. ADP-ribosylglycohydrolase-related protein complex To be Published 0 0 0 0 2YZY Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-05-06 2007-11-06 Ebihara, A.,Watanabe, N.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z00 Crystal structure of dihydroorotase from Thermus thermophilus 2007-05-06 2007-11-06 Kanagawa, M.,Baba, S.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of dihydroorotase from Thermus thermophilus To be Published 0 0 0 0 2Z01 26515187 Crystal structure of phosphoribosylaminoimidazole synthetase from Geobacillus kaustophilus 2007-05-06 2007-11-06 Kanagawa, M.,Baba, S.,Watanabe, Y.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Sampei, G.,Kawai, G. Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus J.Biochem. 2015 0 0 0 2Z06 Crystal structure of uncharacterized conserved protein from Thermus thermophilus 2007-05-06 2007-11-06 Kanagawa, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus To be Published 0 0 0 0 2Z07 Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-05-07 2007-11-13 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z08 Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-05-07 2007-11-13 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z09 Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-05-07 2007-11-13 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2Z0S Crystal structure of putative exosome complex RNA-binding protein 2007-05-07 2007-11-13 Murayama, K.,Kato-Murayama, M.,Takemoto, C.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of putative exosome complex RNA-binding protein To be Published 0 0 0 0 2Z0W Crystal structure of the 2nd CAP-Gly domain in human Restin-like protein 2 reveals a swapped-dimer 2007-05-07 2007-11-13 Saito, K.,Yoshikawa, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Kigawa, T.,Yokoyama, S. Crystal structure of the 2nd CAP-Gly domain in human Restin-like protein 2 reveals a swapped-dimer To be Published 0 0 0 0 2Z13 Crystal structure of the N-terminal DUF1126 in human EF-hand domain 2007-05-07 2007-11-13 Saito, K.,Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Kigawa, T.,Yokoyama, S. Crystal structure of the N-terminal DUF1126 in human EF-hand domain To be Published 0 0 0 0 2Z14 Crystal structure of the N-terminal DUF1126 in human ef-hand domain containing 2 protein 2007-05-08 2007-11-13 Saito, K.,Olsen, S.,Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Kigawa, T.,Yokoyama, S. Crystal structure of the N-terminal DUF1126 in human ef-hand domain containing 2 protein To be Published 0 0 0 0 2Z15 Crystal structure of human Tob1 protein 2007-05-08 2007-11-13 Saito, K.,Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Kigawa, T.,Yokoyama, S. Crystal structure of human Tob1 protein To be Published 0 0 0 0 2Z1M Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 2007-05-09 2007-11-13 Niwa, H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 To be Published 0 0 0 0 2ZBU Crystal structure of uncharacterized conserved protein from Thermotoga maritima 2007-10-30 2007-11-13 Ebihara, A.,Fujimoto, Y.,Kagawa, W.,Fujikawa, N.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermotoga maritima To be Published 0 0 0 0 2ZCW 18699868 Crystal Structure of TTHA1359, a Transcriptional Regulator, CRP/FNR family from Thermus thermophilus HB8 2007-11-13 2007-12-04 Agari, Y.,Kashihara, A.,Yokoyama, S.,Kuramitsu, S.,Shinkai, A. Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator Mol.Microbiol. 2008 70 60 75 2Z3V Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 2007-06-06 2007-12-11 Iino, H.,Yokoyama, S.,Kuramitsu, S. Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2ZBT Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8 2007-10-29 2007-12-18 Manzoku, M.,Ebihara, A.,Fujimoto, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2ZBT Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8 2007-10-29 2007-12-18 Manzoku, M.,Ebihara, A.,Fujimoto, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2EQA 18004774 Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii 2007-03-30 2008-01-15 Agari, Y.,Sato, S.,Wakamatsu, T.,Bessho, Y.,Ebihara, A.,Yokoyama, S.,Kuramitsu, S.,Shinkai, A. X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7 Proteins 2008 70 1108 1111 2E8A 20179333 Crystal structure of the human Hsp70 ATPase domain in complex with AMP-PNP 2007-01-19 2008-01-22 Shida, M.,Arakawa, A.,Ishii, R.,Kishishita, S.,Takagi, T.,Kukimoto-Niino, M.,Sugano, S.,Tanaka, A.,Shirouzu, M.,Yokoyama, S. Direct inter-subdomain interactions switch between the closed and open forms of the Hsp70 nucleotide-binding domain in the nucleotide-free state. Acta Crystallogr.,Sect.D 2010 66 223 232 2E8B Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5 2007-01-19 2008-01-22 Kumarevel, T.S.,Malathy Sony, S.M.,Ponnuswamy, M.N.,Kuramitsu, S.,Yokoyama, S. Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5 To be Published 0 0 0 0 2E8C Crystal structure of a hypothetical protein (Aq_1549) from Aquifex aeolicus VF5 2007-01-19 2008-01-22 Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of a hypothetical protein (Aq_1549) from Aquifex aeolicus VF5 To be Published 0 0 0 0 2OM6 Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3 2007-01-21 2008-01-29 Jeyakanthan, J.,Vaijayanthimala, S.,Gayathri, D.,Velmurugan, D.,Baba, S.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Shiro, Y.,Yokoyama, S. Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3 To be Published 0 0 0 0 2OMD Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5 2007-01-22 2008-01-29 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5 To be Published 0 0 0 0 2EBB Crystal structure of pterin-4-alpha-carbinolamine dehydratase (pterin carbinolamine dehydratase) from Geobacillus kaustophilus HTA426 2007-02-07 2008-02-12 Kumarevel, T.S.,Karthe, P.,Kuramitsu, S.,Yokoyama, S. Crystal structure of pterin-4-alpha-carbinolamine dehydratase (pterin carbinolamine dehydratase) from Geobacillus kaustophilus HTA426 To be Published 0 0 0 0 2YVM 18039767 Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 2007-04-13 2008-02-26 Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol. 2008 190 1108 1117 2EG1 The crystal structure of PII protein 2007-02-27 2008-03-04 Sakai, H.,Shinkai, A.,Kitamura, Y.,Kuramitsu, S.,Yokoyama, S. The crystal structure of PII protein To be Published 0 0 0 0 2EG3 Crystal Structure of Probable Thiosulfate Sulfurtransferase 2007-02-27 2008-03-04 Sakai, H.,Ebihara, A.,Kitamura, Y.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Probable Thiosulfate Sulfurtransferase To be Published 0 0 0 0 2YQY 18004771 Crystal structure of TT2238, a four-helix bundle protein 2007-03-31 2008-03-04 Nagata, K.,Ohtsuka, J.,Takahashi, M.,Asano, A.,Iino, H.,Ebihara, A.,Tanokura, M. Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 A Proteins 2008 70 1103 1107 2EG9 Crystal structure of the truncated extracellular domain of mouse CD38 2007-02-28 2008-03-11 Kukimoto-Niino, M.,Mishima, C.,Wakiyama, M.,Terada, T.,Shirouzu, M.,Hara-Yokoyama, M.,Yokoyama, S. Crystal structure of the truncated extracellular domain of mouse CD38 To be Published 0 0 0 0 2EL7 Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus 2007-03-26 2008-03-18 Yanagisawa, T.,Sumida, T.,Ishii, R.,Sakamoto, K.,Shirouzu, M.,Sekine, S.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S. Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus To be published 0 0 0 0 2Z95 Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 2007-09-18 2008-03-18 Niwa, H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 To be Published 0 0 0 0 2YV8 Crystal structure of N-terminal domain of human galectin-8 2007-04-10 2008-04-15 Kishishita, S.,Nishino, A.,Kazutaka, M.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of N-terminal domain of human galectin-8 To be Published 0 0 0 0 2YVR Crystal structure of MS1043 2007-04-13 2008-04-15 Wang, H.,Kishishita, S.,Takemoto, C.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of MS1043 To be Published 0 0 0 0 2YVS Crystal structure of glycolate oxidase subunit GlcE from Thermus thermophilus HB8 2007-04-15 2008-04-15 Yoneda, K.,Sakuraba, H.,Kuramitsu, S.,Ohshima, T. Crystal structure of glycolate oxidase subunit GlcE from Thermus thermophilus HB8 To be Published 0 0 0 0 2PLR Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 2007-04-20 2008-04-22 Kanaujia, S.P.,Jeyakanthan, J.,Rafi, Z.A.,Sekar, K.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 To be Published 0 0 0 0 2PMH 18653535 Crystal structure of Thr132Ala of ST1022 from Sulfolobus tokodaii 2007-04-22 2008-04-22 Kumarevel, T.S.,Nakano, N.,Ponnuraj, K.,Gopinath, S.C.B.,Sakamoto, K.,Shinkai, A.,Kumar, P.K.R.,Yokoyama, S. Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res. 2008 36 4808 4820 2ZHR 18378702 Crystal structure of BACE1 in complex with OM99-2 at pH 5.0 2008-02-08 2008-04-22 Shimizu, H.,Tosaki, A.,Kaneko, K.,Hisano, T.,Sakurai, T.,Nukina, N. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol. 2008 28 3663 3671 2PN6 18653535 Crystal Structure of S32A of ST1022-Gln complex from Sulfolobus tokodaii 2007-04-23 2008-04-29 Kumarevel, T.S.,Nakano, N.,Ponnuraj, K.,Gopinath, S.C.,Sakamoto, K.,Shinkai, A.,Kumar, P.K.,Yokoyama, S. Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res. 2008 36 4808 4820 2YWE Crystal structure of LepA from Aquifex aeolicus 2007-04-20 2008-04-29 Kawazoe, M.,Takemoto, C.,Kaminishi, T.,Nishino, A.,Nakayama-Ushikoshi, R.,Hanawa-Suetsugu, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structures of GTP-binding protein LepA from Aquifex aeolicus To be Published 0 0 0 0 2YX4 18653535 Crystal Structure of T134A of ST1022 from Sulfolobus tokodaii 2007-04-24 2008-04-29 Kumarevel, T.S.,Nakano, N.,Ponnuraj, K.,Gopinath, S.C.B.,Sakamoto, K.,Shinkai, A.,Kumar, P.K.R.,Yokoyama, S. Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res. 2008 36 4808 4820 2YX7 18653535 Crystals structure of T132A mutant of St1022 from sulfolobus tokodaii 7 2007-04-24 2008-04-29 Kumarevel, T.S.,Nakano, N.,Ponnuraj, K.,Gopinath, S.C.,Sakamoto, K.,Shinkai, A.,Kumar, P.K.,Yokoyama, S. Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res. 2008 36 4808 4820 2YX8 18725456 Crystal structure of the extracellular domain of human RAMP1 2007-04-24 2008-04-29 Kusano, S.,Kukimoto-Niino, M.,Akasaka, R.,Toyama, M.,Terada, T.,Shirouzu, M.,Shindo, T.,Yokoyama, S. Crystal structure of the human receptor activity-modifying protein 1 extracellular domain. Protein Sci. 2008 17 1907 1914 2YY1 Crystal structure of N-terminal domain of human galectin-9 containing L-acetyllactosamine 2007-04-27 2008-04-29 Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of N-terminal domain of human galectin-9 containing L-acetyllactosamine To be Published 0 0 0 0 2YY9 Crystal structure of BTB domain from mouse HKR3 2007-04-27 2008-04-29 Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of BTB domain from mouse HKR3 To be Published 0 0 0 0 2ZMF 18477562 Crystal structure of the C-terminal GAF domain of human phosphodiesterase 10A 2008-04-17 2008-04-29 Handa, N.,Mizohata, E.,Kishishita, S.,Toyama, M.,Morita, S.,Uchikubo-Kamo, T.,Akasaka, R.,Omori, K.,Kotera, J.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal Structure of the GAF-B Domain from Human Phosphodiesterase 10A Complexed with Its Ligand, cAMP J.Biol.Chem. 2008 283 19657 19664 2PPY Crystal structure of Enoyl-CoA hydrates (gk_1992) from Geobacillus Kaustophilus HTA426 2007-05-01 2008-05-06 Kanaujia, S.P.,Jeyakanthan, J.,Kavyashree, M.,Sekar, K.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of Enoyl-CoA hydrates (gk_1992) from Geobacillus Kaustophilus HTA426 To be Published 0 0 0 0 2PQ0 Crystal structure of Hyopthetical protein (gk_1056) from geobacillus Kaustophilus HTA426 2007-05-01 2008-05-06 Kanaujia, S.P.,Jeyakanthan, J.,Kavyashree, M.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of Hyopthetical protein (gk_1056) from geobacillus Kaustophilus HTA426 To be Published 0 0 0 0 2YXS Crystal Structure of N-terminal domain of human galectin-8 with D-lactose 2007-04-27 2008-05-06 Kishishita, S.,Nishino, A.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal Structure of N-terminal domain of human galectin-8 with D-lactose To be Published 0 0 0 0 2YYB 19322824 Crystal structure of TTHA1606 from Thermus thermophilus HB8 2007-04-28 2008-05-06 Tomoike, F.,Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8. Proteins 2009 76 244 248 2YYN Crystal structure of human bromodomain protein 2007-04-30 2008-05-06 Kishishita, S.,Uchikubo-Kamo, T.,Murayama, K.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of human bromodomain protein To be Published 0 0 0 0 2YZA 21543851 Crystal structure of kinase domain of Human 5'-AMP-activated protein kinase alpha-2 subunit mutant (T172D) 2007-05-04 2008-05-06 Handa, N.,Takagi, T.,Saijo, S.,Kishishita, S.,Takaya, D.,Toyama, M.,Terada, T.,Shirouzu, M.,Suzuki, A.,Lee, S.,Yamauchi, T.,Okada-Iwabu, M.,Iwabu, M.,Kadowaki, T.,Minokoshi, Y.,Yokoyama, S. Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain Acta Crystallogr.,Sect.D 2011 67 480 487 2Z0B Crystal structure of CBM20 domain of human putative glycerophosphodiester phosphodiesterase 5 (KIAA1434) 2007-05-07 2008-05-06 Saijo, S.,Nishino, A.,Kishishita, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of CBM20 domain of human putative glycerophosphodiester phosphodiesterase 5 (KIAA1434) To be Published 0 0 0 0 2PT5 Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5 2007-05-08 2008-05-13 Jeyakanthan, J.,Nithya, N.,Shimada, A.,Velmurugan, D.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Shiro, Y.,Yokoyama, S. Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5 To be Published 0 0 0 0 2Z0A Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) 2007-05-07 2008-05-13 Saijo, S.,Kishishita, S.,Kamo-Uchikubo, T.,Terada, T.,Shirouzu, M.,Ito, H.,Ito, T.,Yokoyama, S. Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) To be Published 0 0 0 0 2Z0G The crystal structure of PII protein 2007-05-07 2008-05-13 Sakai, H.,Shinkai, A.,Kitamura, Y.,Kuramitsu, S.,Yokoyama, S. The crystal structure of PII protein To be Published 0 0 0 0 2Z0U Crystal structure of C2 domain of KIBRA protein 2007-05-07 2008-05-13 Murayama, K.,Kato-Murayama, M.,Terada, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of C2 domain of KIBRA protein To be Published 0 0 0 0 2Z16 Crystal structure of Matrix protein 1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) 2007-05-08 2008-05-13 Saijo, S.,Kishishita, S.,Uchikubo-Kamo, T.,Terada, T.,Shirouzu, M.,Ito, H.,Ito, T.,Yokoyama, S. Crystal structure of Matrix protein 1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) To be Published 0 0 0 0 2UYG Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus 2007-04-05 2008-05-27 Utsunomiya, H.,Agari, Y.,Imagawa, T.,Tsuge, H. Crystallogaphic Structure of the Typeii 3-Dehydroquinase from Thermus Thermophilus To be Published 0 0 0 0 2ZDC Crystal structure of dUTPase from Sulfolobus tokodaii 2007-11-21 2008-05-27 Kanagawa, M.,Baba, S.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structure of dUTPase from Sulfolobus tokodaii To be Published 0 0 0 0 2ZDG Crystal structure of D-Alanine:D-Alanine Ligase with ADP from Thermus thermophius HB8 2007-11-22 2008-05-27 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of D-Alanine:D-Alanine Ligase with ADP from Thermus thermophius HB8 To be Published 0 0 0 0 2ZDH Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8 2007-11-22 2008-05-27 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8 To be Published 0 0 0 0 2ZDQ Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 2007-11-27 2008-05-27 Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 To be Published 0 0 0 0 2QQ1 Crystal Structure Of Molybdenum Cofactor Biosynthesis (aq_061) Other Form From Aquifex Aeolicus Vf5 2007-07-26 2008-07-29 Jeyakanthan, J.,Mahesh, S.,Kanaujia, S.P.,Ramakumar, S.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Yokoyama, S. Crystal Structure Of Molybdenum Cofactor Biosynthesis (aq_061) Other Form From Aquifex Aeolicus Vf5 To be Published 0 0 0 0 2QQ3 Crystal Structure Of Enoyl-CoA Hydrates Subunit I (gk_2039) Other Form From Geobacillus Kaustophilus HTA426 2007-07-26 2008-07-29 Jeyakanthan, J.,Kanaujia, S.P.,Sekar, K.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S. Crystal Structure Of Enoyl-CoA Hydrates Subunit I (gk_2039) Other Form From Geobacillus Kaustophilus HTA426 To be Published 0 0 0 0 2QQ4 Crystal structure of Iron-sulfur cluster biosynthesis protein IscU (TTHA1736) from thermus thermophilus HB8 2007-07-26 2008-07-29 Jeyakanthan, J.,Kanaujia, S.P.,Sekar, K.,Agari, Y.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S. Crystal structure of Iron-sulfur cluster biosynthesis protein IscU (TTHA1736) from thermus thermophilus HB8 To be Published 0 0 0 0 2ZIE 18618709 Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative 2008-02-15 2008-07-29 Morita, R.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins 2008 73 259 264 2ZA0 18695250 Crystal structure of mouse glyoxalase I complexed with methyl-gerfelin 2007-09-26 2008-08-12 Kawatani, M.,Okumura, H.,Honda, K.,Kanoh, N.,Muroi, M.,Dohmae, N.,Takami, M.,Kitagawa, M.,Futamura, Y.,Imoto, M.,Osada, H. The identification of an osteoclastogenesis inhibitor through the inhibition of glyoxalase I Proc.Natl.Acad.Sci.Usa 2008 105 11691 11696 2ZJB 18566005 Crystal structure of the human Dmc1-M200V polymorphic variant 2008-03-02 2008-08-12 Hikiba, J.,Hirota, K.,Kagawa, W.,Ikawa, S.,Kinebuchi, T.,Sakane, I.,Takizawa, Y.,Yokoyama, S.,Mandon-Pepin, B.,Nicolas, A.,Shibata, T.,Ohta, K.,Kurumizaka, H. Structural and functional analyses of the DMC1-M200V polymorphism found in the human population Nucleic Acids Res. 2008 36 4181 4190 2RBG Crystal structure of hypothetical protein(ST0493) from sulfolobus tokodaii 2007-09-19 2008-09-30 Jeyakanthan, J.,Kuramitsu, S.,Yokoyama, S. Crystal structure of hypothetical protein(ST0493) from sulfolobus tokodaii To be Published 0 0 0 0 2ZQE 18838375 Crystal structure of the Smr domain of Thermus thermophilus MutS2 2008-08-08 2008-09-30 Fukui, K.,Nakagawa, N.,Kitamura, Y.,Nishida, Y.,Masui, R.,Kuramitsu, S. Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression J.Biol.Chem. 2008 283 33417 33427 2ZDJ Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA 2007-11-26 2008-12-02 Agari, Y.,Tamakoshi, M.,Yamagishi, A.,Shinkai, A.,Ebihara, A.,Yokoyama, S.,Kuramitsu, S.,Oshima, T. Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA To be Published 0 0 0 0 2ZOP 19173314 X-ray crystal structure of a CRISPR-associated Cmr5 family protein from Thermus thermophilus HB8 2008-05-28 2009-02-10 Sakamoto, K.,Agari, Y.,Agari, K.,Yokoyama, S.,Kuramitsu, S.,Shinkai, A. X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8 Proteins 2009 75 528 532 2ZHP Crystal structure of bleomycin-binding protein from Streptoalloteichus hindustanus complexed with bleomycin derivative 2008-02-06 2009-02-17 Miyazaki, I.,Okumura, H.,Simizu, S.,Takahashi, Y.,Kanoh, N.,Nonomura, Y.,Osada, H. Structure-Affinity Relationship Study of Bleomycins and Shble protein Using a Chemical Array To be Published 0 0 0 0 2ZHP Crystal structure of bleomycin-binding protein from Streptoalloteichus hindustanus complexed with bleomycin derivative 2008-02-06 2009-02-17 Miyazaki, I.,Okumura, H.,Simizu, S.,Takahashi, Y.,Kanoh, N.,Nonomura, Y.,Osada, H. Structure-Affinity Relationship Study of Bleomycins and Shble protein Using a Chemical Array To be Published 0 0 0 0 2ZO4 18767153 Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8 2008-05-05 2009-03-17 Yamamura, A.,Ohtsuka, J.,Kubota, K.,Agari, Y.,Ebihara, A.,Nakagawa, N.,Nagata, K.,Tanokura, M. Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8. Proteins 2008 73 1053 1057 3CQ1 Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (TT1362) from Thermus Thermophilus HB8 2008-04-02 2009-04-07 Jeyakanthan, J.,Satoh, S.,Kitamura, Y.,Yokoyama, S.,Kuramitsu, S. Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (TT1362) from Thermus Thermophilus HB8 To be Published 0 0 0 0 3CQ3 Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (other form) from Thermus Thermophilus HB8 2008-04-02 2009-04-07 Jeyakanthan, J.,Kanaujia, S.P.,Sekar, K.,Satoh, S.,Kitamura, Y.,Yokoyama, S.,Kurmamitsu, S. Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (other form) from Thermus Thermophilus HB8 To be Published 0 0 0 0 2ZVB Crystal structure of TT0207 from Thermus thermophilus HB8 2008-11-04 2009-05-05 Shimizu, K.,Kunishima, N. Crystal structure of TT0207 from Thermus thermophilus HB8 To be published 0 0 0 0 2ZVB Crystal structure of TT0207 from Thermus thermophilus HB8 2008-11-04 2009-05-05 Shimizu, K.,Kunishima, N. Crystal structure of TT0207 from Thermus thermophilus HB8 To be published 0 0 0 0 2ZVC Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8 2008-11-04 2009-05-05 Shimizu, K.,Kunishima, N. Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8 To be published 0 0 0 0 3HJN Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima 2009-05-22 2009-06-02 Yoshikawa, S.,Nakagawa, N.,Shirouzu, M.,Yokoyama, S.,Kuramitsu, S. Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima To be Published 0 0 0 0 3I7U 20124691 Crystal structure of AP4A hydrolase (aq_158) from Aquifex aeolicus VF5 2009-07-09 2009-07-21 Jeyakanthan, J.,Kanaujia, S.P.,Nishida, Y.,Nakagawa, N.,Praveen, S.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5 Acta Crystallogr.,Sect.D 2010 66 116 124 3I7V 20124691 Crystal structure of AP4A hydrolase complexed with AP4A (ATP) (aq_158) from Aquifex aeolicus Vf5 2009-07-09 2009-07-21 Jeyakanthan, J.,Kanaujia, S.P.,Nishida, Y.,Nakagawa, N.,Praveen, S.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5 Acta Crystallogr.,Sect.D 2010 66 116 124 2ZQC Aztreonam acyl-intermediate structure of class a beta-lactam Toho-1 E166A/R274N/R276N triple mutant 2008-08-07 2009-07-28 Nitanai, Y.,Shimamura, T.,Uchiyama, T.,Ishii, Y.,Takehira, M.,Yutan, K.,Matsuzawa, H.,Miyano, M. Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates To be Published 0 0 0 0 3A4Y Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 2009-07-22 2009-08-04 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 to be published 0 0 0 0 3IDZ Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8 2009-07-22 2009-08-04 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8 To be Published 0 0 0 0 3IE1 Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA 2009-07-22 2009-08-04 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA To be Published 0 0 0 0 2ZTW 19833522 Structure of 3-isopropylmalate dehydrogenase in complex with the inhibitor and NAD+ 2008-10-10 2009-10-13 Nango, E.,Yamamoto, T.,Kumasaka, T.,Eguchi, T. Crystal structure of 3-isopropylmalate dehydrogenase in complex with NAD(+) and a designed inhibitor Bioorg.Med.Chem. 2009 17 7789 7794 2ZXO 20129927 Crystal structure of RecJ from Thermus thermophilus HB8 2009-01-05 2010-01-05 Wakamatsu, T.,Kitamura, Y.,Kotera, Y.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem. 2010 285 9762 9769 2ZXP 20129927 Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8 2009-01-05 2010-01-05 Wakamatsu, T.,Kitamura, Y.,Kotera, Y.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem. 2010 285 9762 9769 2ZXR 20129927 Crystal structure of RecJ in complex with Mg2+ from Thermus thermophilus HB8 2009-01-05 2010-01-05 Wakamatsu, T.,Kitamura, Y.,Kotera, Y.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem. 2010 285 9762 9769 3IKJ 19944110 Structural characterization for the nucleotide binding ability of subunit A mutant S238A of the A1AO ATP synthase 2009-08-06 2010-01-12 Kumar, A.,Manimekalai, M.S.,Balakrishna, A.M.,Jeyakanthan, J.,Gruber, G. Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution. J.Mol.Biol. 2010 396 301 320 3FVG 21893069 Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with MSVIII-19 in space group P1 2009-01-15 2010-01-19 Unno, M.,Shinohara, M.,Takayama, K.,Tanaka, H.,Teruya, K.,Doh-Ura, K.,Sakai, R.,Sasaki, M.,Ikeda-Saito, M. Binding and Selectivity of the Marine Toxin Neodysiherbaine A and Its Synthetic Analogues to GluK1 and GluK2 Kainate Receptors. J.Mol.Biol. 2011 413 667 683 3FVK 21893069 Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with 8-deoxy-neodysiherbaine A in space group P1 2009-01-15 2010-01-19 Unno, M.,Shinohara, M.,Takayama, K.,Tanaka, H.,Teruya, K.,Doh-Ura, K.,Sakai, R.,Sasaki, M.,Ikeda-Saito, M. Binding and Selectivity of the Marine Toxin Neodysiherbaine A and Its Synthetic Analogues to GluK1 and GluK2 Kainate Receptors. J.Mol.Biol. 2011 413 667 683 3ACC 20693661 Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with GMP from Thermus thermophilus HB8 2009-12-30 2010-02-09 Kanagawa, M.,Baba, S.,Ebihara, A.,Shinkai, A.,Hirotsu, K.,Mega, R.,Kim, K.,Kuramitsu, S.,Sampei, G.,Kawai, G. Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F 2010 66 893 898 3ACD 20693661 Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with IMP from Thermus thermophilus HB8 2009-12-30 2010-02-09 Kanagawa, M.,Baba, S.,Ebihara, A.,Shinkai, A.,Hirotsu, K.,Mega, R.,Kim, K.,Kuramitsu, S.,Sampei, G.,Kawai, G. Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F 2010 66 893 898 3K8U 20100826 Crystal Structure of the Peptidase Domain of Streptococcus ComA, a Bi-functional ABC Transporter Involved in Quorum Sensing Pathway 2009-10-14 2010-02-23 Ishii, S.,Yano, T.,Ebihara, A.,Okamoto, A.,Manzoku, M.,Hayashi, H. Crystal structure of the peptidase domain of Streptococcus ComA, a bifunctional ATP-binding cassette transporter involved in the quorum-sensing pathway J.Biol.Chem. 2010 285 10777 10785 3K8U 20100826 Crystal Structure of the Peptidase Domain of Streptococcus ComA, a Bi-functional ABC Transporter Involved in Quorum Sensing Pathway 2009-10-14 2010-02-23 Ishii, S.,Yano, T.,Ebihara, A.,Okamoto, A.,Manzoku, M.,Hayashi, H. Crystal structure of the peptidase domain of Streptococcus ComA, a bifunctional ATP-binding cassette transporter involved in the quorum-sensing pathway J.Biol.Chem. 2010 285 10777 10785 3A8Y 20223214 Crystal structure of the complex between the BAG5 BD5 and Hsp70 NBD 2009-10-13 2010-03-31 Arakawa, A.,Handa, N.,Ohsawa, N.,Shida, M.,Kigawa, T.,Hayashi, F.,Shirouzu, M.,Yokoyama, S. The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange Structure 2010 18 309 319 3AAI 20395270 X-ray crystal structure of CsoR from Thermus thermophilus HB8 2009-11-17 2010-04-28 Sakamoto, K.,Agari, Y.,Agari, K.,Kuramitsu, S.,Shinkai, A. Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8 Microbiology 2010 156 1993 2005 3JQJ 20606263 Crystal structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8 2009-09-07 2010-06-30 Kanaujia, S.P.,Jeyakanthan, J.,Nakagawa, N.,Balasubramaniam, S.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D 2010 66 821 833 3ABT 20568732 Crystal Structure of LSD1 in complex with trans-2-pentafluorophenylcyclopropylamine 2009-12-21 2010-07-07 Mimasu, S.,Umezawa, N.,Sato, S.,Higuchi, T.,Umehara, T.,Yokoyama, S. Structurally Designed trans-2-Phenylcyclopropylamine Derivatives Potently Inhibit Histone Demethylase LSD1/KDM1 Biochemistry 2010 49 6494 6503 3ABU 20568732 Crystal Structure of LSD1 in complex with a 2-PCPA derivative, S1201 2009-12-21 2010-07-07 Mimasu, S.,Umezawa, N.,Sato, S.,Higuchi, T.,Umehara, T.,Yokoyama, S. Structurally Designed trans-2-Phenylcyclopropylamine Derivatives Potently Inhibit Histone Demethylase LSD1/KDM1 Biochemistry 2010 49 6494 6503 3MFY 20615420 Structural characterization of the subunit A mutant F236A of the A-ATP synthase from Pyrococcus horikoshii 2010-04-05 2010-07-07 Kumar, A.,Manimekalai, M.S.,Balakrishna, A.M.,Priya, R.,Biukovic, G.,Jeyakanthan, J.,Gruber, G. The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding. J.Mol.Biol. 2010 401 892 905 3NBS 20615990 Crystal structure of dimeric cytochrome c from horse heart 2010-06-04 2010-07-14 Hirota, S.,Hattori, Y.,Nagao, S.,Taketa, M.,Komori, H.,Kamikubo, H.,Wang, Z.,Takahashi, I.,Negi, S.,Sugiura, Y.,Kataoka, M.,Higuchi, Y. Cytochrome c polymerization by successive domain swapping at the C-terminal helix Proc.Natl.Acad.Sci.USA 2010 107 12854 12859 3NBT 20615990 Crystal structure of trimeric cytochrome c from horse heart 2010-06-04 2010-07-14 Hirota, S.,Hattori, Y.,Nagao, S.,Taketa, M.,Komori, H.,Kamikubo, H.,Wang, Z.,Takahashi, I.,Negi, S.,Sugiura, Y.,Kataoka, M.,Higuchi, Y. Cytochrome c polymerization by successive domain swapping at the C-terminal helix Proc.Natl.Acad.Sci.USA 2010 107 12854 12859 3IEK Crystal Structure of native TTHA0252 from Thermus thermophilus HB8 2009-07-22 2010-07-28 Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Crystal Structure of native TTHA0252 from Thermus thermophilus HB8 To be Published 0 0 0 0 3AA8 20639520 Crystal Structure Analysis of the Mutant CutA1 (S11V/E61V) from E. coli 2009-11-12 2010-08-11 Matsuura, Y.,Ota, M.,Tanaka, T.,Takehira, M.,Ogasahara, K.,Bagautdinov, B.,Kunishima, N.,Yutani, K. Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design J.Biochem. 2010 148 449 458 3AH6 20639520 Remarkable improvement of the heat stability of CutA1 from E.coli by rational protein designing 2010-04-15 2010-08-11 Matsuura, Y.,Ota, M.,Tanaka, T.,Takehira, M.,Ogasahara, K.,Bagautdinov, B.,Kunishima, N.,Yutani, K. Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design J.Biochem. 2010 148 449 458 3ACL 20711196 Crystal Structure of Human Pirin in complex with Triphenyl Compound 2010-01-05 2010-08-18 Miyazaki, I.,Simizu, S.,Okumura, H.,Takagi, S.,Osada, H. A small-molecule inhibitor shows that pirin regulates migration of melanoma cells Nat.Chem.Biol. 2010 6 667 673 3OR1 Crystal structure of dissimilatory sulfite reductase I (DsrI) 2010-09-06 2010-09-22 Hsieh, Y.C.,Liu, M.Y.,Wang, V.C.C.,Chiang, Y.L.,Liu, E.H.,Wu, W.G.,Chan, S.I.,Chen, C.J. Structure insights into the enzyme catalysis from comparison of three forms of dissimilatory sulfite reductase from Desulfovibrio gigas To be Published 0 0 0 0 3OR2 Crystal structure of dissimilatory sulfite reductase II (DsrII) 2010-09-06 2010-09-22 Hsieh, Y.C.,Liu, M.Y.,Wang, V.C.C.,Chiang, Y.L.,Liu, E.H.,Wu, W.G.,Chan, S.I.,Chen, C.J. Dissimilatory Sulfite Reductase, Sulfate Reduction To be Published 0 0 0 0 3ALN 20732303 Crystal Structure of human non-phosphorylated MKK4 kinase domain complexed with AMP-PNP 2010-08-04 2010-10-27 Matsumoto, T.,Kinoshita, T.,Kirii, Y.,Yokota, K.,Hamada, K.,Tada, T. Crystal structures of MKK4 kinase domain reveal that substrate peptide binds to an allosteric site and induces an auto-inhibition state Biochem.Biophys.Res.Commun. 2010 400 369 373 3A99 21062737 Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide 2009-10-22 2010-11-03 Morishita, D.,Takami, M.,Yoshikawa, S.,Katayama, R.,Sato, S.,Kukimoto-Niino, M.,Umehara, T.,Shirouzu, M.,Sekimizu, K.,Yokoyama, S.,Fujita, N. Cell-permeable carboxyl-terminal p27(Kip1) peptide exhibits anti-tumor activity by inhibiting Pim-1 kinase J.Biol.Chem. 2011 286 2681 2688 3AAL 21358045 Crystal Structure of endonuclease IV from Geobacillus kaustophilus 2009-11-20 2010-12-01 Asano, R.,Ishikawa, H.,Nakane, S.,Nakagawa, N.,Kuramitsu, S.,Masui, R. An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Acta Crystallogr.,Sect.D 2011 67 149 155 3AAM 21358045 Crystal structure of endonuclease IV from Thermus thermophilus HB8 2009-11-20 2010-12-01 Asano, R.,Ishikawa, H.,Nakane, S.,Nakagawa, N.,Kuramitsu, S.,Masui, R. An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Acta Crystallogr.,Sect.D 2011 67 149 155 3AB7 Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8 2009-12-01 2010-12-15 Iino, H.,Shimizu, N.,Ebihara, A.,Goto, M.,Hirotsu, K.,Kuramitsu, S. Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8 To be Published 0 0 0 0 3AB8 Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 complexed with ATPs. 2009-12-01 2010-12-15 Iino, H.,Shimizu, N.,Ebihara, A.,Goto, M.,Hirotsu, K.,Kuramitsu, S. Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8 To be Published 0 0 0 0 3AJI 21128684 Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion 2010-06-07 2010-12-22 Sato, S.,Mimasu, S.,Sato, A.,Hino, N.,Sakamoto, K.,Umehara, T.,Yokoyama, S. Crystallographic study of a site-specifically cross-linked protein complex with a genetically incorporated photoreactive amino acid Biochemistry 2011 50 250 257 3O0R 21109633 Crystal structure of nitric oxide reductase from Pseudomonas aeruginosa in complex with antibody fragment 2010-07-20 2010-12-29 Hino, T.,Matsumoto, Y.,Nagano, S.,Sugimoto, H.,Fukumori, Y.,Murata, T.,Iwata, S.,Shiro, Y. Structural basis of biological N2O generation by bacterial nitric oxide reductase Science 2010 330 1666 1670 3MCH 21206014 Crystal structure of the molybdopterin biosynthesis enzyme MoaB (TTHA0341) from thermus theromophilus HB8 2010-03-29 2011-01-19 Kanaujia, S.P.,Jeyakanthan, J.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms Acta Crystallogr.,Sect.F 2011 67 2 16 3MCI 21206014 Crystal structure of molybdenum cofactor biosynthesis (AQ_061) from aquifex aeolicus VF5 2010-03-29 2011-01-19 Kanaujia, S.P.,Jeyakanthan, J.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms Acta Crystallogr.,Sect.F 2011 67 2 16 3MCJ 21206014 Crystal structure of molybdenum cofactor biosynthesis (AQ_061) other form from aquifex aeolicus VF5 2010-03-29 2011-01-19 Kanaujia, S.P.,Jeyakanthan, J.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Sekar, K. Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms Acta Crystallogr.,Sect.F 2011 67 2 16 3ANG 21349973 Crystal structure of Thermus thermophilus FadR in complex with E. coli-derived dodecyl-CoA 2010-09-01 2011-03-09 Agari, Y.,Agari, K.,Sakamoto, K.,Kuramitsu, S.,Shinkai, A. TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology 2011 157 1589 1601 3ANP 21349973 Crystal structure of Thermus thermophilus FadR, a TetR familly transcriptional repressor, in complex with lauroyl-CoA. 2010-09-06 2011-03-09 Agari, Y.,Agari, K.,Sakamoto, K.,Kuramitsu, S.,Shinkai, A. TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology 2011 157 1589 1601 3PCV 21454538 Crystal structure analysis of human leukotriene C4 synthase at 1.9 angstrom resolution 2010-10-22 2011-03-16 Saino, H.,Ukita, Y.,Ago, H.,Irikura, D.,Nisawa, A.,Ueno, G.,Yamamoto, M.,Kanaoka, Y.,Lam, B.K.,Austen, K.F.,Miyano, M. The catalytic architecture of leukotriene C4 synthase with two arginine residues J.Biol.Chem. 2011 286 16392 16401 3ND8 21396943 Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase 2010-06-07 2011-03-30 Manimekalai, M.S.,Kumar, A.,Jeyakanthan, J.,Gruber, G. The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase. J.Mol.Biol. 2011 408 736 754 3ND9 21396943 Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase 2010-06-07 2011-03-30 Manimekalai, M.S.,Kumar, A.,Jeyakanthan, J.,Gruber, G. The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase. J.Mol.Biol. 2011 408 736 754 3MIW 22194333 Crystal Structure of Rotavirus NSP4 2010-04-12 2011-05-25 Chacko, A.R.,Jeyakanthan, J.,Ueno, G.,Sekar, K.,Rao, C.D.,Dodson, E.J.,Suguna, K.,Read, R.J. A new pentameric structure of rotavirus NSP4 revealed by molecular replacement. Acta Crystallogr.,Sect.D 2012 68 57 61 3ASY 21539325 ligand-free structure of uridine kinase from thermus thermophilus HB8 2010-12-22 2011-06-01 Tomoike, F.,Nakagawa, N.,Kuramitsu, S.,Masui, R. A Single Amino Acid Limits the Substrate Specificity of Thermus thermophilus Uridine-Cytidine Kinase to Cytidine Biochemistry 2011 50 4597 4607 3B02 22383301 Crystal structure of TTHB099, a transcriptional regulator CRP family from Thermus thermophilus HB8 2011-06-03 2011-06-15 Agari, Y.,Kuramitsu, S.,Shinkai, A. X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from Thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule Proteins 2012 80 1490 1494 3AWS 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is low 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AWU 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 40 h 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AWX 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie H82Q mutant soaked in a Cu(II)-containing solution for 80 hr 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AWY 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie M84L mutant soaked in a Cu(II)-containing solution for 80 hr 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AWZ 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie H97Q mutant soaked in a Cu(II)-containing solution for 80 hr 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AYN 21906602 Crystal structure of squid isorhodopsin 2011-05-09 2011-08-17 Murakami, M.,Kouyama, T. Crystallographic Analysis of the Primary Photochemical Reaction of Squid Rhodopsin J.Mol.Biol. 2011 413 615 627 3QBG 21871461 Anion-free blue form of pharaonis halorhodopsin 2011-01-13 2011-08-31 Kanada, S.,Takeguchi, Y.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin J.Mol.Biol. 2011 413 162 176 3QBK 21871461 Bromide-bound form of pharaonis halorhodopsin 2011-01-13 2011-08-31 Kanada, S.,Takeguchi, Y.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin J.Mol.Biol. 2011 413 162 176 3QBL Pharaonis halorhodopsin complexed with nitrate 2011-01-13 2011-08-31 Kanada, S.,Takeguchi, Y.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structures of anion-free blue and yellow forms of pharaonis halorhodopsin To be Published 0 0 0 0 3QG1 21925186 Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase 2011-01-24 2011-10-05 Priya, R.,Kumar, A.,Manimekalai, M.S.,Gruber, G. Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance. J.Mol.Biol. 2011 413 657 666 3QJY 21925186 Crystal structure of P-loop G234A mutant of subunit A of the A1AO ATP synthase 2011-01-31 2011-10-05 Priya, R.,Kumar, A.,Manimekalai, M.S.,Gruber, G. Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance. J.Mol.Biol. 2011 413 657 666 3AYT 21984829 TTHB071 protein from Thermus thermophilus HB8 2011-05-17 2011-10-19 Nakane, S.,Wakamatsu, T.,Masui, R.,Kuramitsu, S.,Fukui, K. In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress J.Biol.Chem. 2011 286 41636 41646 3AYV 21984829 TTHB071 protein from Thermus thermophilus HB8 soaking with ZnCl2 2011-05-17 2011-10-19 Nakane, S.,Wakamatsu, T.,Masui, R.,Kuramitsu, S.,Fukui, K. In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress J.Biol.Chem. 2011 286 41636 41646 3AQF 22102369 Crystal structure of the human CRLR/RAMP2 extracellular complex 2010-10-29 2011-11-02 Kusano, S.,Kukimoto-Niino, M.,Hino, N.,Ohsawa, N.,Okuda, K.,Sakamoto, K.,Shirouzu, M.,Shindo, T.,Yokoyama, S. Structural basis for extracellular interactions between calcitonin receptor-like receptor and receptor activity-modifying protein 2 for adrenomedullin-specific binding Protein Sci. 2012 21 199 210 3AU3 22000517 Crystal structure of armadillo repeat domain of APC 2011-01-28 2011-11-02 Morishita, E.C.,Murayama, K.,Kato-Murayama, M.,Ishizuka-Katsura, Y.,Tomabechi, Y.,Hayashi, T.,Terada, T.,Handa, N.,Shirouzu, M.,Akiyama, T.,Yokoyama, S. Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68 Structure 2011 19 1496 1508 3AQE 22102369 Crystal structure of the extracellular domain of human RAMP2 2010-10-29 2011-11-09 Kusano, S.,Kukimoto-Niino, M.,Hino, N.,Ohsawa, N.,Okuda, K.,Sakamoto, K.,Shirouzu, M.,Shindo, T.,Yokoyama, S. Structural basis for extracellular interactions between calcitonin receptor-like receptor and receptor activity-modifying protein 2 for adrenomedullin-specific binding Protein Sci. 2012 21 199 210 3VGZ 22120742 Crystal structure of E. coli YncE 2011-08-23 2011-11-16 Kagawa, W.,Sagawa, T.,Niki, H.,Kurumizaka, H. Structural basis for the DNA-binding activity of the bacterial beta-propeller protein YncE Acta Crystallogr.,Sect.D 2011 67 1045 1053 3VG8 22231934 Crystal structure of hypothetical protein TTHB210 from Thermus thermophilus HB8 2011-08-03 2011-11-30 Agari, Y.,Kuramitsu, S.,Shinkai, A. Crystal structure of hypothetical protein TTHB210, controlled by the [sigma]E/anti-[sigma]E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer Proteins 2012 80 958 962 3VG8 22231934 Crystal structure of hypothetical protein TTHB210 from Thermus thermophilus HB8 2011-08-03 2011-11-30 Agari, Y.,Kuramitsu, S.,Shinkai, A. Crystal structure of hypothetical protein TTHB210, controlled by the [sigma]E/anti-[sigma]E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer Proteins 2012 80 958 962 3B29 22139193 Human leukotriene C4 synthase in complex with dodecyl-beta-D-selenomaltoside 2011-07-22 2011-12-14 Saino, H.,Ago, H.,Ukita, Y.,Miyano, M. Seleno-detergent MAD phasing of leukotriene C4 synthase in complex with dodecyl-beta-D-selenomaltoside Acta Crystallogr.,Sect.F 2011 67 1666 1673 3ATU 21608060 Crystal structure of human Hsp70 NBD in the ADP- and Mg ion-bound state 2011-01-13 2011-12-28 Arakawa, A.,Handa, N.,Shirouzu, M.,Yokoyama, S. Biochemical and structural studies on the high affinity of Hsp70 for ADP. Protein Sci. 2011 20 1367 1379 3ATV 21608060 Crystal structure of human Hsp70 NBD in the ADP-bound and Mg ion-free state 2011-01-13 2011-12-28 Arakawa, A.,Handa, N.,Shirouzu, M.,Yokoyama, S. Biochemical and structural studies on the high affinity of Hsp70 for ADP. Protein Sci. 2011 20 1367 1379 3AY9 21608060 Crystal structure of human Hsp70 NBD in the ADP-, Mg ion-, and K ion-bound state 2011-05-03 2011-12-28 Arakawa, A.,Handa, N.,Shirouzu, M.,Yokoyama, S. Biochemical and structural studies on the high affinity of Hsp70 for ADP. Protein Sci. 2011 20 1367 1379 3AU2 22306405 DNA polymerase X from Thermus thermophilus HB8 complexed with Ca-dGTP 2011-01-28 2012-01-25 Nakane, S.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol. 2012 417 179 196 3AU6 22306405 DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP 2011-01-28 2012-01-25 Nakane, S.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol. 2012 417 179 196 3AUO 22306405 DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP 2011-02-11 2012-01-25 Nakane, S.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol. 2012 417 179 196 3AUF 24108189 Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii 2011-02-03 2012-03-07 Sampei, G.,Kanagawa, M.,Baba, S.,Shimasaki, T.,Taka, H.,Mitsui, S.,Fujiwara, S.,Yanagida, Y.,Kusano, M.,Suzuki, S.,Terao, K.,Kawai, H.,Fukai, Y.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Kawai, G. Structures and reaction mechanisms of the two related enzymes, PurN and PurU. J.Biochem. 2013 154 569 579 3UG2 22349823 Crystal structure of the mutated EGFR kinase domain (G719S/T790M) in complex with gefitinib 2011-11-02 2012-03-07 Yoshikawa, S.,Kukimoto-Niino, M.,Parker, L.,Handa, N.,Terada, T.,Fujimoto, T.,Terazawa, Y.,Wakiyama, M.,Sato, M.,Sano, S.,Kobayashi, T.,Tanaka, T.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Kawa, S.,Semba, K.,Yamamoto, T.,Yokoyama, S. Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor Oncogene 2013 32 27 38 3VNP Crystal structure of hypothetical protein (GK2848) from Geobacillus Kaustophilus 2012-01-17 2012-03-07 Karthe, P.P.,Kumarevel, T.S.,Kuramitsu, S.,Yokoyama, S. Crystal structure of hypothetical protein (GK2848) from Geobacillus Kaustophilus To be Published 0 0 0 0 3VOF 22429290 Cellobiohydrolase mutant, CcCel6C D102A, in the closed form 2012-01-23 2012-03-21 Tamura, M.,Miyazaki, T.,Tanaka, Y.,Yoshida, M.,Nishikawa, A.,Tonozuka, T. Comparison of the structural changes in two cellobiohydrolases, CcCel6A and CcCel6C, from Coprinopsis cinerea - a tweezer-like motion in the structure of CcCel6C Febs J. 2012 279 1871 1882 3UAA 22250058 Multicopper Oxidase CueO mutant C500SE506Q (data1) 2011-10-21 2012-04-11 Komori, H.,Sugiyama, R.,Kataoka, K.,Higuchi, Y.,Sakurai, T. An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl. 2012 51 1861 1864 3UAB 22250058 Multicopper Oxidase CueO mutant C500SE506Q (data2) 2011-10-21 2012-04-11 Komori, H.,Sugiyama, R.,Kataoka, K.,Higuchi, Y.,Sakurai, T. An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl. 2012 51 1861 1864 3UAC 22250058 Multicopper Oxidase CueO mutant C500SE506Q (data4) 2011-10-21 2012-04-11 Komori, H.,Sugiyama, R.,Kataoka, K.,Higuchi, Y.,Sakurai, T. An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl. 2012 51 1861 1864 3UAD 22250058 Multicopper Oxidase CueO mutant C500SE506Q (data5) 2011-10-21 2012-04-11 Komori, H.,Sugiyama, R.,Kataoka, K.,Higuchi, Y.,Sakurai, T. An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl. 2012 51 1861 1864 3AX6 Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermotoga maritima 2011-03-30 2012-04-25 Okada, K.,Taka, H.,Tsunoda, S.,Tamura, S.,Miyazawa, R.,Baba, S.,Kanagawa, M.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria To be Published 0 0 0 0 3B0X 22306405 K263A mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP 2011-06-17 2012-05-02 Nakane, S.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol. 2012 417 179 196 3B0Y 22306405 K263D mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP 2011-06-17 2012-05-02 Nakane, S.,Ishikawa, H.,Nakagawa, N.,Kuramitsu, S.,Masui, R. The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol. 2012 417 179 196 3VH9 22311113 Crystal structure of Aeromonas proteolytica aminopeptidase complexed with 8-quinolinol 2011-08-24 2012-05-02 Hanaya, K.,Suetsugu, M.,Saijo, S.,Yamato, I.,Aoki, S. Potent inhibition of dinuclear zinc(II) peptidase, an aminopeptidase from Aeromonas proteolytica, by 8-quinolinol derivatives: inhibitor design based on Zn(2+) fluorophores, kinetic, and X-ray crystallographic study. J.Biol.Inorg.Chem. 2012 17 517 529 3SUR 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NAG-thiazoline. 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3SUS 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with Gal-NAG-thiazoline 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3SUT 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with PUGNAc 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3SUU 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with Gal-PUGNAc 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3SUV 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-DNJ 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3SUW 22367352 Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-CAS 2011-07-11 2012-06-06 Sumida, T.,Stubbs, K.A.,Ito, M.,Yokoyama, S. Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach Org.Biomol.Chem. 2012 10 2607 2612 3VPR 22753056 Crystal Structure of a TetR Family Transcriptional Regulator PfmR from Thermus thermophilus HB8 2012-03-12 2012-07-11 Agari, Y.,Sakamoto, K.,Kuramitsu, S.,Shinkai, A. Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB8 J.Bacteriol. 2012 0 0 0 3VP5 22798069 X-ray Crystal Structure of Wild Type HrtR in the Holo Form 2012-02-23 2012-07-25 Sawai, H.,Yamanaka, M.,Sugimoto, H.,Shiro, Y.,Aono, S. Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis. J.Biol.Chem. 2012 287 30755 30768 4EI7 22847006 Crystal structure of Bacillus cereus TubZ, GDP-form 2012-04-05 2012-08-15 Hoshino, S.,Hayashi, I. Filament formation of the FtsZ/tubulin-like protein TubZ from the Bacillus cereus pXO1 plasmid. J.Biol.Chem. 2012 287 32103 32112 4EI9 22847006 Crystal structure of Bacillus cereus TubZ, GTP-form 2012-04-05 2012-08-15 Hoshino, S.,Hayashi, I. Filament formation of the FtsZ/tubulin-like protein TubZ from the Bacillus cereus pXO1 plasmid. J.Biol.Chem. 2012 287 32103 32112 3UMW 22540945 Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indazol-3-yl)methylene]-6-methoxy-7-(piperazin-1-ylmethyl)benzofuran-3(2H)-one 2011-11-14 2012-10-03 Nakano, H.,Saito, N.,Parker, L.J.,Tada, Y.,Abe, M.,Tsuganezawa, K.,Yokoyama, S.,Tanaka, A.,Kojima, H.,Okabe, T.,Nagano, T. Rational evolution of a novel type of potent and selective proviral integration site in Moloney murine leukemia virus kinase 1 (PIM1) inhibitor from a screening-hit compound. J.Med.Chem. 2012 55 5151 5164 3VBA 22326391 Crystal structure of methanogen 3-isopropylmalate isomerase small subunit 2012-01-02 2012-11-14 Lee, E.H.,Cho, Y.W.,Hwang, K.Y. Crystal structure of LeuD from Methanococcus jannaschii. Biochem.Biophys.Res.Commun. 2012 419 160 164 4EOG 22987782 Crystal structure of Csx1 of Pyrococcus furiosus 2012-04-14 2013-01-02 Kim, Y.K.,Kim, Y.G.,Oh, B.H. Crystal structure and nucleic acid-binding activity of the CRISPR-associated protein Csx1 of Pyrococcus furiosus. Proteins 2013 81 261 270 3VNG Crystal Structure of Keap1 in Complex with Synthetic Small Molecular based on a co-crystallization 2012-01-12 2013-01-16 Kunishima, N.,Tanaka, T.,Satoh, M.,Saburi, H. Crystal Structure of Keap1 in Complex with Synthetic Small Molecular based on a co-crystallization To be Published 0 0 0 0 3VNH Crystal Structure of Keap1 Soaked with Synthetic Small Molecular 2012-01-12 2013-01-16 Kunishima, N.,Tanaka, T.,Satoh, M.,Saburi, H. Crystal Structure of Keap1 Soaked with Synthetic Small Molecular To be Published 0 0 0 0 3VUQ 23408580 Crystal structure of TTHA0167, a transcriptional regulator, TetR/AcrR family from Thermus thermophilus HB8 2012-07-04 2013-02-27 Agari, Y.,Sakamoto, K.,Yutani, K.,Kuramitsu, S.,Shinkai, A. Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8 Proteins 2013 81 1166 1178 4E9V 24598746 Multicopper Oxidase mgLAC (data1) 2012-03-21 2013-03-27 Komori, H.,Sugiyama, R.,Kataoka, K.,Miyazaki, K.,Higuchi, Y.,Sakurai, T. New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D 2014 70 772 779 4E9W 24598746 Multicopper Oxidase mgLAC (data2) 2012-03-21 2013-03-27 Komori, H.,Sugiyama, R.,Kataoka, K.,Miyazaki, K.,Higuchi, Y.,Sakurai, T. New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D 2014 70 772 779 4E9X 24598746 Multicopper Oxidase mgLAC (data3) 2012-03-21 2013-03-27 Komori, H.,Sugiyama, R.,Kataoka, K.,Miyazaki, K.,Higuchi, Y.,Sakurai, T. New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D 2014 70 772 779 4E9Y 24598746 Multicopper Oxidase mgLAC (data4) 2012-03-21 2013-03-27 Komori, H.,Sugiyama, R.,Kataoka, K.,Miyazaki, K.,Higuchi, Y.,Sakurai, T. New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D 2014 70 772 779 3W6J 23541893 Crystal structure of ScpAB core complex 2013-02-15 2013-04-24 Kamada, K.,Miyata, M.,Hirano, T. Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB Structure 2013 21 581 594 3W6K 23541893 Crystal structure of dimer of ScpB N-terminal domain complexed with ScpA peptide 2013-02-15 2013-04-24 Kamada, K.,Miyata, M.,Hirano, T. Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB Structure 2013 21 581 594 4E9Q 17804014 Multicopper Oxidase CueO (data2) 2012-03-21 2013-05-01 Kataoka, K.,Komori, H.,Ueki, Y.,Konno, Y.,Kamitaka, Y.,Kurose, S.,Tsujimura, S.,Higuchi, Y.,Kano, K.,Seo, D.,Sakurai, T. Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol. 2007 373 141 152 4E9R 17804014 Multicopper Oxidase CueO (data4) 2012-03-21 2013-05-01 Kataoka, K.,Komori, H.,Ueki, Y.,Konno, Y.,Kamitaka, Y.,Kurose, S.,Tsujimura, S.,Higuchi, Y.,Kano, K.,Seo, D.,Sakurai, T. Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol. 2007 373 141 152 4E9S 17804014 Multicopper Oxidase CueO (data5) 2012-03-21 2013-05-01 Kataoka, K.,Komori, H.,Ueki, Y.,Konno, Y.,Kamitaka, Y.,Kurose, S.,Tsujimura, S.,Higuchi, Y.,Kano, K.,Seo, D.,Sakurai, T. Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol. 2007 373 141 152 4E9T 17804014 Multicopper Oxidase CueO (data6) 2012-03-21 2013-05-01 Kataoka, K.,Komori, H.,Ueki, Y.,Konno, Y.,Kamitaka, Y.,Kurose, S.,Tsujimura, S.,Higuchi, Y.,Kano, K.,Seo, D.,Sakurai, T. Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol. 2007 373 141 152 4EF3 27380373 Multicopper Oxidase CueO (Citrate buffer) 2012-03-29 2013-05-22 Komori, H.,Kataoka, K.,Tanaka, S.,Matsuda, N.,Higuchi, Y.,Sakurai, T. Exogenous acetate ion reaches the type II copper centre in CueO through the water-excretion channel and potentially affects the enzymatic activity. Acta Crystallogr.,Sect.F 2016 72 558 563 4I3B 23768684 Crystal structure of fluorescent protein UnaG wild type 2012-11-26 2013-06-19 Kumagai, A.,Ando, R.,Miyatake, H.,Greimel, P.,Kobayashi, T.,Hirabayashi, Y.,Shimogori, T.,Miyawaki, A. A bilirubin-inducible fluorescent protein from eel muscle Cell(Cambridge,Mass.) 2013 153 1602 1611 4I3C 23768684 Crystal structure of fluorescent protein UnaG N57Q mutant 2012-11-26 2013-06-19 Kumagai, A.,Ando, R.,Miyatake, H.,Greimel, P.,Kobayashi, T.,Hirabayashi, Y.,Shimogori, T.,Miyawaki, A. A bilirubin-inducible fluorescent protein from eel muscle Cell(Cambridge,Mass.) 2013 153 1602 1611 4I3D 23768684 Crystal structure of fluorescent protein UnaG N57A mutant 2012-11-26 2013-06-19 Kumagai, A.,Ando, R.,Miyatake, H.,Greimel, P.,Kobayashi, T.,Hirabayashi, Y.,Shimogori, T.,Miyawaki, A. A bilirubin-inducible fluorescent protein from eel muscle Cell(Cambridge,Mass.) 2013 153 1602 1611 3W9Y 23624197 Crystal structure of the human DLG1 guanylate kinase domain 2013-04-18 2013-06-26 Mori, S.,Tezuka, Y.,Arakawa, A.,Handa, N.,Shirouzu, M.,Akiyama, T.,Yokoyama, S. Crystal structure of the guanylate kinase domain from discs large homolog 1 (DLG1/SAP97) Biochem.Biophys.Res.Commun. 2013 435 334 338 3W5W 23851074 Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis 2013-02-07 2013-07-10 Uemura, Y.,Nakagawa, N.,Wakamatsu, T.,Kim, K.,Montelione, G.T.,Hunt, J.F.,Kuramitsu, S.,Masui, R. Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins. Febs Lett. 2013 587 2669 2674 3WA6 23836494 Crystal structure of tannase from Lactobacillus plantarum in the orthorhombic crystal 2013-04-27 2013-07-24 Matoba, Y.,Tanaka, N.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. Crystallographic and mutational analyses of tannase from Lactobacillus plantarum Proteins 2013 81 2052 2058 3WA7 23836494 Crystal structure of selenomethionine-labeled tannase from Lactobacillus plantarum in the orthorhombic crystal 2013-04-27 2013-07-24 Matoba, Y.,Tanaka, N.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. Crystallographic and mutational analyses of tannase from Lactobacillus plantarum. Proteins 2013 81 2052 2058 3W34 26510656 Ternary complex of Thermus thermophilus HB8 uridine-cytidine kinase with substrates 2012-12-10 2013-12-11 Tomoike, F.,Nakagawa, N.,Kuramitsu, S.,Masui, R. Structural and Biochemical Studies on the Reaction Mechanism of Uridine-Cytidine Kinase Protein J. 2015 34 411 420 3W58 Crystal structure of Galectin-1 in the lactose-unbound state(P21) 2013-01-25 2014-01-29 Saburi, H.,Tanaka, T.,Kunishima, N. Crystal structure of Galectin-1 in the lactose-unbound state To be Published 0 0 0 0 3W59 Crystal structure of Galectin-1 in the lactose-unbound state(P212121) 2013-01-26 2014-01-29 Saburi, H.,Tanaka, T.,Kunishima, N. Crystal structure of Galectin-1 in the lactose-unbound state To be Published 0 0 0 0 3W8M 24604808 Crystal Structure of HasAp with Iron Salophen 2013-03-19 2014-01-29 Shirataki, C.,Shoji, O.,Terada, M.,Ozaki, S.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Inhibition of Heme Uptake in Pseudomonas aeruginosa by its Hemophore (HasAp ) Bound to Synthetic Metal Complexes Angew.Chem.Int.Ed.Engl. 2014 53 2862 2866 4LMU 24531473 Crystal structure of Pim1 in complex with the inhibitor Quercetin (resulting from displacement of SKF86002) 2013-07-11 2014-02-12 Parker, L.J.,Taruya, S.,Tsuganezawa, K.,Ogawa, N.,Mikuni, J.,Honda, K.,Tomabechi, Y.,Handa, N.,Shirouzu, M.,Yokoyama, S.,Tanaka, A. Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002. Acta Crystallogr.,Sect.D 2014 70 392 404 4LUD 24531473 Crystal Structure of HCK in complex with the fluorescent compound SKF86002 2013-07-25 2014-02-12 Parker, L.J.,Taruya, S.,Tsuganezawa, K.,Ogawa, N.,Mikuni, J.,Honda, K.,Tomabechi, Y.,Handa, N.,Shirouzu, M.,Yokoyama, S.,Tanaka, A. Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002. Acta Crystallogr.,Sect.D 2014 70 392 404 4LUE 24531473 Crystal Structure of HCK in complex with 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine (resulting from displacement of SKF86002) 2013-07-25 2014-02-12 Parker, L.J.,Taruya, S.,Tsuganezawa, K.,Ogawa, N.,Mikuni, J.,Honda, K.,Tomabechi, Y.,Handa, N.,Shirouzu, M.,Yokoyama, S.,Tanaka, A. Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002. Acta Crystallogr.,Sect.D 2014 70 392 404 3WPV 24633372 Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S 2014-01-17 2014-03-12 Ohta, Y.,Hatada, Y.,Hidaka, Y.,Shimane, Y.,Usui, K.,Ito, T.,Fujita, K.,Yokoi, G.,Mori, M.,Sato, S.,Miyazaki, T.,Nishikawa, A.,Tonozuka, T. Enhancing thermostability and the structural characterization of Microbacterium saccharophilum K-1 beta-fructofuranosidase Appl.Microbiol.Biotechnol. 2014 98 6667 6677 4NER 24598746 Multicopper Oxidase CueO (data1) 2013-10-30 2014-03-12 Komori, H.,Sugiyama, R.,Kataoka, K.,Miyazaki, K.,Higuchi, Y.,Sakurai, T. New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D 2014 70 772 779 4JP2 24699644 Crystal Structure of TT0495 protein from Thermus thermophilus HB8 2013-03-19 2014-03-19 Pampa, K.J.,Lokanath, N.K.,Kunishima, N.,Ravishnkar Rai, V. The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D 2014 70 994 1004 4JP3 24699644 Crystal Structure of TT0495 protein from Thermus thermophilus HB8 2013-03-19 2014-03-19 Pampa, K.J.,Lokanath, N.K.,Kunishima, N.,Ravishnkar Rai, V. The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D 2014 70 994 1004 3W8R 28955773 Mutant structure of Thermus thermophilus HB8 uridine-cytidine kinase 2013-03-21 2014-03-26 Tomoike, F.,Nakagawa, N.,Fukui, K.,Yano, T.,Kuramitsu, S.,Masui, R. Indispensable residue for uridine binding in the uridine-cytidine kinase family. Biochem Biophys Rep 2017 11 93 98 4OM5 24898246 Crystal structure of CTX A4 from Taiwan Cobra (Naja naja atra) 2014-01-26 2014-06-11 Lee, S.C.,Lin, C.C.,Wang, C.H.,Wu, P.L.,Huang, H.W.,Chang, C.I.,Wu, W.G. Endocytotic Routes of Cobra Cardiotoxins Depend on Spatial Distribution of Positively Charged and Hydrophobic Domains to Target Distinct Types of Sulfated Glycoconjugates on Cell Surface. J.Biol.Chem. 2014 289 20170 20181 4PRK 24794195 Crystal structure of D-lactate dehydrogenase (D-LDH) from Lactobacillus jensenii 2014-03-06 2014-06-18 Kim, S.,Gu, S.A.,Kim, Y.H.,Kim, K.J. Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii. Int.J.Biol.Macromol. 2014 0 151 157 3WE6 Crystal structure of anti-Prostaglandin E2 Fab fragment 2013-07-01 2014-07-02 Sugahara, M.,Ago, H.,Saino, H.,Miyano, M.,Kurahashi, Y.,Aoyama, S.,Takehira, M.,Yutani, K.,Yamamoto, S. Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published 0 0 0 0 3WFH Crystal structure of anti-Prostaglandin E2 Fab fragment PGE2 complex 2013-07-19 2014-07-23 Sugahara, M.,Ago, H.,Saino, H.,Miyano, M.,Kurahashi, Y.,Aoyama, S.,Takehira, M.,Yutani, K.,Yamamoto, S. Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published 0 0 0 0 3WPJ 25043871 SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE 2014-01-12 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WPK 25043871 SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC 2014-01-12 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WPL 25043871 SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC 2014-01-12 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WU7 25043871 Spatiotemporal development of soaked protein crystal; derivative 250 sec 2014-04-23 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WU8 25043871 Spatiotemporal development of soaked protein crystal; derivative 1080 sec 2014-04-23 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WU9 25043871 Spatiotemporal development of soaked protein crystal; derivative 1580 sec 2014-04-23 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WUA 25043871 Spatiotemporal development of soaked protein crystal; derivative 3610 sec 2014-04-23 2014-07-30 Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y. Spatiotemporal development of soaked protein crystal Sci Rep 2014 4 5731 5731 3WF6 25078151 Crystal structure of S6K1 kinase domain in complex with a pyrazolopyrimidine derivative 4-[4-(1H-indol-3-yl)-3,6-dihydropyridin-1(2H)-yl]-1H-pyrazolo[3,4-d]pyrimidine 2013-07-17 2014-08-06 Niwa, H.,Mikuni, J.,Sasaki, S.,Tomabechi, Y.,Honda, K.,Ikeda, M.,Ohsawa, N.,Wakiyama, M.,Handa, N.,Shirouzu, M.,Honma, T.,Tanaka, A.,Yokoyama, S. Crystal structures of the S6K1 kinase domain in complexes with inhibitors J.Struct.Funct.Genom. 2014 15 153 164 3WHP Crystal structure of the C-terminal domain of Themus thermophilus LitR in complex with cobalamin 2013-08-30 2014-09-03 Agari, Y.,Takano, H.,Beppu, T.,Ueda, K.,Shinkai, A. Crystal structure of the C-terminal domain of Themus thermophilus LitR in complex with cobalamin To be Published 0 0 0 0 3WHX Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex 2013-09-03 2014-09-10 Sugahara, M.,Ago, H.,Saino, H.,Miyano, M.,Kurahashi, Y.,Aoyama, S.,Takehira, M.,Yutani, K.,Yamamoto, S. Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published 0 0 0 0 3WSV 25379380 Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form 2014-03-27 2014-09-10 Matoba, Y.,Miyasako, M.,Matsuo, K.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio 2014 4 834 847 3WSW 25379380 Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-bound form 2014-03-27 2014-09-10 Matoba, Y.,Miyasako, M.,Matsuo, K.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio 2014 4 834 847 3WIF Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex 2013-09-12 2014-09-17 Sugahara, M.,Ago, H.,Saino, H.,Miyano, M.,Kurahashi, Y.,Aoyama, S.,Takehira, M.,Yutani, K.,Yamamoto, S. Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published 0 0 0 0 4REU 25305494 Revelation of Endogenously bound Fe2+ ions in the Crystal Structure of Ferritin from Escherichia coli 2014-09-24 2014-10-22 Thiruselvam, V.,Sivaraman, P.,Kumarevel, T.,Ponnuswamy, M.N. Revelation of endogenously bound Fe(2+) ions in the crystal structure of ferritin from Escherichia coli. Biochem.Biophys.Res.Commun. 2014 453 636 641 3WU5 25383757 Reduced E.coli Lon Proteolytic domain 2014-04-22 2014-11-12 Nishii, W.,Kukimoto-Niino, M.,Terada, T.,Shirouzu, M.,Muramatsu, T.,Kojima, M.,Kihara, H.,Yokoyama, S. A redox switch shapes the Lon protease exit pore to facultatively regulate proteolysis. Nat. Chem. Biol. 2015 11 46 51 3WU6 25383757 Oxidized E.coli Lon Proteolytic domain 2014-04-22 2014-11-12 Nishii, W.,Kukimoto-Niino, M.,Terada, T.,Shirouzu, M.,Muramatsu, T.,Kojima, M.,Kihara, H.,Yokoyama, S. A redox switch shapes the Lon protease exit pore to facultatively regulate proteolysis. Nat. Chem. Biol. 2015 11 46 51 3WSP Crystal Structure of P450BM3 with N-perfluorononanoyl-L-tryptophan 2014-03-20 2014-11-26 Cong, Z.,Shoji, O.,Kasai, C.,Kawakami, N.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Activation of Wild-type Cytochrome P450BM3 by the Next Generation of Decoy Molecules: Enhanced Hydroxylation of Gaseous Alkanes and Crystallographic Evidence. ACS CATALYSIS 2015 5 150 156 4NZY Crystal structure (type-2) of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 2013-12-13 2014-12-24 Biswas, A.,Jeyakanthan, J.,Sekar, K. Insight into Substrate Binding Mechanism in Thymidylate Kinase based on Intrinsic Dynamics of the Active Site To be Published 0 0 0 0 3WTO 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Desnitro-imidacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3X3U Crystal structure of wild-type of E. coli CutA1 2015-02-12 2015-04-15 Tanaka, T.,Matsuura, Y.,Yutani, K. Crystal structure of wild-type of E. coli CutA1 To be Published 0 0 0 0 4XZG 25858588 Crystal structure of HIRAN domain of human HLTF 2015-02-04 2015-04-15 Hishiki, A.,Hara, K.,Ikegaya, Y.,Yokoyama, H.,Shimizu, T.,Sato, M.,Hashimoto, H. Structure of a Novel DNA-binding Domain of Helicase-like Transcription Factor (HLTF) and Its Functional Implication in DNA Damage Tolerance J.Biol.Chem. 2015 290 13215 13223 4Y65 Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation 2015-02-12 2015-04-15 Tanaka, T.,Matsuura, Y.,Yutani, K. Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation To Be Published 0 0 0 0 4WR4 25985257 Crystal Structure of GST Mutated with Halogenated Tyrosine (7bGST-1) 2014-10-23 2015-08-19 Ohtake, K.,Yamaguchi, A.,Mukai, T.,Kashimura, H.,Hirano, N.,Haruki, M.,Kohashi, S.,Yamagishi, K.,Murayama, K.,Tomabechi, Y.,Itagaki, T.,Akasaka, R.,Kawazoe, M.,Takemoto, C.,Shirouzu, M.,Yokoyama, S.,Sakamoto, K. Protein stabilization utilizing a redefined codon Sci Rep 2015 5 9762 9762 4WR5 25985257 Crystal Structure of GST Mutated with Halogenated Tyrosine (7cGST-1) 2014-10-23 2015-08-19 Ohtake, K.,Yamaguchi, A.,Mukai, T.,Kashimura, H.,Hirano, N.,Haruki, M.,Kohashi, S.,Yamagishi, K.,Murayama, K.,Tomabechi, Y.,Itagaki, T.,Akasaka, R.,Kawazoe, M.,Takemoto, C.,Shirouzu, M.,Yokoyama, S.,Sakamoto, K. Protein stabilization utilizing a redefined codon Sci Rep 2015 5 9762 9762 4Y6I Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation 2015-02-13 2015-09-23 Tanaka, T.,Matsuura, Y.,Yutani, K. Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation To Be Published 0 0 0 0 5D9D 26360462 Luciferin-regenerating enzyme solved by SAD using synchrotron radiation at room temperature 2015-08-18 2015-09-23 Yamashita, K.,Pan, D.,Okuda, T.,Sugahara, M.,Kodan, A.,Yamaguchi, T.,Murai, T.,Gomi, K.,Kajiyama, N.,Mizohata, E.,Suzuki, M.,Nango, E.,Tono, K.,Joti, Y.,Kameshima, T.,Park, J.,Song, C.,Hatsui, T.,Yabashi, M.,Iwata, S.,Kato, H.,Ago, H.,Yamamoto, M.,Nakatsu, T. An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography. Sci Rep 2015 5 14017 14017 5EEO soybean lipoxygenase(L1)-T756R 2015-10-23 2015-11-25 Mikami, B.,Nagaya, T.,Hioki, Y. The structural basis for specificity in lipoxygenase catalysis To Be Published 0 0 0 0 4RZX Crystal structure (type-3) of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 2014-12-26 2015-12-30 Biswas, A.,Jeyakanthan, J.,Sekar, K. Crystal structure (type-3) of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 To be Published 0 0 0 0 4XFP Crystal Structure of Highly Active Mutant of Bacillus sp. TB-90 Urate Oxidase 2014-12-28 2016-01-13 Hibi, T.,Hayashi, Y.,Kawamura, A.,Itoh, T.,Fukada, H.,Kishimoto, T.,Nishiya, Y. Glycine Substitution of Surface Proline 287 Involves Entropic Enhancement of Bacillus sp. TB-90 Uricase Activity To be published 0 0 0 0 4S35 28627020 AMPPCP and TMP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 2015-01-26 2016-01-27 Biswas, A.,Shukla, A.,Chaudhary, S.K.,Santhosh, R.,Jeyakanthan, J.,Sekar, K. Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate. Febs J. 2017 284 2527 2544 5DHD 26823175 Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1 2015-08-30 2016-02-10 Hanazono, Y.,Takeda, K.,Niwa, S.,Hibi, M.,Takahashi, N.,Kanai, T.,Atomi, H.,Miki, K. Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett. 2016 590 298 304 5DHE 26823175 Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1 2015-08-30 2016-02-10 Hanazono, Y.,Takeda, K.,Niwa, S.,Hibi, M.,Takahashi, N.,Kanai, T.,Atomi, H.,Miki, K. Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett. 2016 590 298 304 4YN5 Catalytic domain of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase 2015-03-09 2016-03-09 Shimane, Y.,Takeda, N.,Ohta, Y.,Kumasaka, T.,Shimamura, S.,Minegishi, H.,Usami, R.,Hatada, Y. Crystal structure of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase To Be Published 0 0 0 0 5F7A 26929369 Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K 2015-12-07 2016-03-16 Fukuda, Y.,Tse, K.M.,Nakane, T.,Nakatsu, T.,Suzuki, M.,Sugahara, M.,Inoue, S.,Masuda, T.,Yumoto, F.,Matsugaki, N.,Nango, E.,Tono, K.,Joti, Y.,Kameshima, T.,Song, C.,Hatsui, T.,Yabashi, M.,Nureki, O.,Murphy, M.E.P.,Inoue, T.,Iwata, S.,Mizohata, E. Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography Proc.Natl.Acad.Sci.USA 2016 113 2928 2933 5F7B 26929369 Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K 2015-12-07 2016-03-16 Fukuda, Y.,Tse, K.M.,Nakane, T.,Nakatsu, T.,Suzuki, M.,Sugahara, M.,Inoue, S.,Masuda, T.,Yumoto, F.,Matsugaki, N.,Nango, E.,Tono, K.,Joti, Y.,Kameshima, T.,Song, C.,Hatsui, T.,Yabashi, M.,Nureki, O.,Murphy, M.E.P.,Inoue, T.,Iwata, S.,Mizohata, E. Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography Proc.Natl.Acad.Sci.USA 2016 113 2928 2933 5B1Q 27152739 Human herpesvirus 6B tegument protein U14 2015-12-11 2016-04-20 Wang, B.,Nishimura, M.,Tang, H.,Kawabata, A.,Mahmoud, N.F.,Khanlari, Z.,Hamada, D.,Tsuruta, H.,Mori, Y. Crystal Structure of Human Herpesvirus 6B Tegument Protein U14. Plos Pathog. 2016 12 0 0 5AYQ 27216889 Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of VGSC beta subunits 2015-09-01 2016-06-08 Shimizu, H.,Miyazaki, H.,Ohsawa, N.,Shoji, S.,Ishizuka-Katsura, Y.,Tosaki, A.,Oyama, F.,Terada, T.,Sakamoto, K.,Shirouzu, M.,Sekine, S.,Nukina, N.,Yokoyama, S. Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of voltage-gated sodium channel beta subunits Sci Rep 2016 6 26618 26618 5AWT 26822536 Crystal structure of the SGIP1 mu homology domain in complex with an Eps15 fragment containing two DPF motifs (YDPFGGDPFKG) 2015-07-08 2016-07-06 Shimada, A.,Yamaguchi, A.,Kohda, D. Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain. Sci Rep 2016 6 19565 19565 5CWZ 27562646 Crystal structure of the kinase domain of human TRAF2 and NCK-interacting protein kinase 2015-07-28 2016-07-27 Masuda, M.,Uno, Y.,Ohbayashi, N.,Ohata, H.,Mimata, A.,Kukimoto-Niino, M.,Moriyama, H.,Kashimoto, S.,Inoue, T.,Goto, N.,Okamoto, K.,Shirouzu, M.,Sawa, M.,Yamada, T. TNIK inhibition abrogates colorectal cancer stemness Nat Commun 2016 7 12586 12586 5D7A 27562646 Crystal structure of the kinase domain of TRAF2 and NCK-interacting protein kinase with NCB-0846 2015-08-13 2016-08-17 Masuda, M.,Uno, Y.,Ohbayashi, N.,Ohata, H.,Mimata, A.,Kukimoto-Niino, M.,Moriyama, H.,Kashimoto, S.,Inoue, T.,Goto, N.,Okamoto, K.,Shirouzu, M.,Sawa, M.,Yamada, T. TNIK inhibition abrogates colorectal cancer stemness Nat Commun 2016 7 12586 12586 5GV0 27663661 Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane protein 1 (LAMP-1) 2016-09-01 2016-10-12 Terasawa, K.,Tomabechi, Y.,Ikeda, M.,Ehara, H.,Kukimoto-Niino, M.,Wakiyama, M.,Podyma-Inoue, K.A.,Rajapakshe, A.R.,Watabe, T.,Shirouzu, M.,Hara-Yokoyama, M. Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes Biochem.Biophys.Res.Commun. 2016 479 489 495 5H0Q 27492925 Crystal structure of lipid binding protein Nakanori at 1.5A 2016-10-06 2016-10-19 Makino, A.,Abe, M.,Ishitsuka, R.,Murate, M.,Kishimoto, T.,Sakai, S.,Hullin-Matsuda, F.,Shimada, Y.,Inaba, T.,Miyatake, H.,Tanaka, H.,Kurahashi, A.,Pack, C.G.,Kasai, R.S.,Kubo, S.,Schieber, N.L.,Dohmae, N.,Tochio, N.,Hagiwara, K.,Sasaki, Y.,Aida, Y.,Fujimori, F.,Kigawa, T.,Nishibori, K.,Parton, R.G.,Kusumi, A.,Sako, Y.,Anderluh, G.,Yamashita, M.,Kobayashi, T.,Greimel, P.,Kobayashi, T. A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C FASEB J. 2017 31 1301 1322 5GTQ Luciferin-regenerating enzyme at cryogenic temperature 2016-08-23 2016-11-09 Yamashita, K. Luciferin-regenerating enzyme at cryogenic temperature To Be Published 0 0 0 0 5B57 27830695 Inward-facing conformation of ABC heme importer BhuUV from Burkholderia cenocepacia 2016-04-25 2016-11-16 Naoe, Y.,Nakamura, N.,Doi, A.,Sawabe, M.,Nakamura, H.,Shiro, Y.,Sugimoto, H. Crystal structure of bacterial haem importer complex in the inward-facing conformation Nat Commun 2016 7 13411 13411 5H70 Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 2016-11-15 2016-12-07 Biswas, A.,Jeyakanthan, J.,Sekar, K.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7 To Be Published 0 0 0 0 5GZT 27907169 Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery 2016-10-01 2016-12-28 Itoh, T.,Hibi, T.,Suzuki, F.,Sugimoto, I.,Fujiwara, A.,Inaka, K.,Tanaka, H.,Ohta, K.,Fujii, Y.,Taketo, A.,Kimoto, H. Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery PLoS ONE 2016 11 0 0 5HLE Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the ADP state 2016-01-14 2017-01-25 Yamagishi, M.,Shigematsu, H.,Yokoyama, T.,Kikkawa, M.,Sugawa, M.,Aoki, M.,Shirouzu, M.,Yajima, J.,Nitta, R. Backwards motion in kinesin-14 requires neck-mimic to control a neck-helix swing. To Be Published 0 0 0 0 5B2U Crystal Structure of P450BM3 with N-perfluorohexanoyl -L-tryptophan 2016-02-03 2017-02-08 Cong, Z.,Shoji, O.,Kasai, C.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Crystal Structure of P450BM3 with decoy molecules to be published 0 0 0 0 5B2W Crystal Structure of P450BM3 with N-perfluorododecanoyl-L-tryptophan 2016-02-03 2017-02-08 Cong, Z.,Shoji, O.,Kasai, C.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Crystal Structure of P450BM3 with decoy molecules to be published 0 0 0 0 5B2X Crystal Structure of P450BM3 mutant with N-perfluoroheptanoyl-L-tryptophan 2016-02-03 2017-02-08 Cong, Z.,Shoji, O.,Kasai, C.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Crystal Structure of P450BM3 with decoy molecules to be published 0 0 0 0 5B2Y Crystal Structure of P450BM3 with N-perfluorodecanoyl-L-tryptophan 2016-02-07 2017-02-08 Cong, Z.,Shoji, O.,Kasai, C.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Crystal Structure of P450BM3 with decoy molecules to be published 0 0 0 0 5H68 28286005 Crystal structure of an engaged dimer of the Geobacillus stearothermophilus SMC head domain 2016-11-11 2017-03-15 Kamada, K.,Su'etsugu, M.,Takada, H.,Miyata, M.,Hirano, T. Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts Structure 2017 25 603 0 5H69 28286005 Crystal structure of an asymmetric dimer of the Geobacillus stearothermophilus SMC hinge domain 2016-11-11 2017-03-15 Kamada, K.,Su'etsugu, M.,Takada, H.,Miyata, M.,Hirano, T. Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts Structure 2017 25 603 0 5GZ9 28251761 Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide 2016-09-27 2017-03-29 Nagae, M.,Mishra, S.K.,Neyazaki, M.,Oi, R.,Ikeda, A.,Matsugaki, N.,Akashi, S.,Manya, H.,Mizuno, M.,Yagi, H.,Kato, K.,Senda, T.,Endo, T.,Nogi, T.,Yamaguchi, Y. 3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy. Genes Cells 2017 22 348 359 5H6Q 28336409 Crystal structure of LSD1-CoREST in complex with peptide 11 2016-11-14 2017-04-12 Amano, Y.,Kikuchi, M.,Sato, S.,Yokoyama, S.,Umehara, T.,Umezawa, N.,Higuchi, T. Development and crystallographic evaluation of histone H3 peptide with N-terminal serine substitution as a potent inhibitor of lysine-specific demethylase 1. Bioorg. Med. Chem. 2017 25 2617 2624 5X9Z 28416699 Crystal structure of inositol 1,4,5-trisphosphate receptor large cytosolic domain 2017-03-10 2017-04-19 Hamada, K.,Miyatake, H.,Terauchi, A.,Mikoshiba, K. IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography Proc. Natl. Acad. Sci. U.S.A. 2017 114 4661 4666 5XA0 28416699 Crystal structure of inositol 1,4,5-trisphosphate receptor cytosolic domain 2017-03-10 2017-04-19 Hamada, K.,Miyatake, H.,Terauchi, A.,Mikoshiba, K. IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography Proc. Natl. Acad. Sci. U.S.A. 2017 114 4661 4666 5XA1 28416699 Crystal structure of inositol 1,4,5-trisphosphate receptor cytosolic domain with inositol 1,4,5-trisphosphate 2017-03-10 2017-04-19 Hamada, K.,Miyatake, H.,Terauchi, A.,Mikoshiba, K. IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography Proc. Natl. Acad. Sci. U.S.A. 2017 114 4661 4666 5GUG 28416699 Crystal structure of inositol 1,4,5-trisphosphate receptor large cytosolic domain with inositol 1,4,5-trisphosphate 2016-08-29 2017-04-26 Hamada, K.,Miyatake, H.,Terauchi, A.,Mikoshiba, K. IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography Proc. Natl. Acad. Sci. U.S.A. 2017 114 4661 4666 5X7E 28302483 Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant) in complex with 1,25-dihydroxyvitamin D2 2017-02-25 2017-05-10 Yasuda, K.,Yogo, Y.,Sugimoto, H.,Mano, H.,Takita, T.,Ohta, M.,Kamakura, M.,Ikushiro, S.,Yasukawa, K.,Shiro, Y.,Sakaki, T. Production of an active form of vitamin D2 by genetically engineered CYP105A1 Biochem. Biophys. Res. Commun. 2017 486 336 341 5B6F Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4 2016-05-27 2017-05-31 Sugahara, M.,Ago, H.,Saino, H.,Miyano, M.,Yamamoto, S.,Takahashi, Y. Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4 To Be Published 0 0 0 0 5XGS 28608466 Crystal structure of human WBSCR16 2017-04-16 2017-06-21 Koyama, M.,Sasaki, T.,Sasaki, N.,Matsuura, Y. Crystal structure of human WBSCR16, an RCC1-like protein in mitochondria Protein Sci. 2017 26 1870 1877 5GIZ 28913898 Periplasmic heme-binding protein BhuT in apo form 2016-06-26 2017-06-28 Naoe, Y.,Nakamura, N.,Rahman, M.M.,Tosha, T.,Nagatoishi, S.,Tsumoto, K.,Shiro, Y.,Sugimoto, H. Structural basis for binding and transfer of heme in bacterial heme-acquisition systems. Proteins 2017 85 2217 2230 5H56 28627020 ADP and dTDP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 2016-11-04 2017-06-28 Biswas, A.,Shukla, A.,Chaudhary, S.K.,Santhosh, R.,Jeyakanthan, J.,Sekar, K. Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate FEBS J. 2017 284 2527 2544 5H5K 28627020 ATP and CMP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 2016-11-06 2017-06-28 Biswas, A.,Shukla, A.,Chaudhary, S.K.,Santhosh, R.,Jeyakanthan, J.,Sekar, K. Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate FEBS J. 2017 284 2527 2544 5XAI 28627020 dTMP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 2017-03-13 2017-06-28 Biswas, A.,Shukla, A.,Chaudhary, S.K.,Santhosh, R.,Jeyakanthan, J.,Sekar, K. Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate FEBS J. 2017 284 2527 2544 5XAW 28655765 Parallel homodimer structures of voltage-gated sodium channel beta4 for cell-cell adhesion 2017-03-15 2017-07-05 Shimizu, H.,Tosaki, A.,Ohsawa, N.,Ishizuka-Katsura, Y.,Shoji, S.,Miyazaki, H.,Oyama, F.,Terada, T.,Shirouzu, M.,Sekine, S.I.,Nukina, N.,Yokoyama, S. Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion J. Biol. Chem. 2017 292 13428 13440 5GUB 28432302 Crystal structure of solute-binding protein complexed with sulfate group-free unsaturated chondroitin disaccharide 2016-08-26 2017-07-19 Oiki, S.,Mikami, B.,Maruyama, Y.,Murata, K.,Hashimoto, W. A bacterial ABC transporter enables import of mammalian host glycosaminoglycans Sci Rep 2017 7 1069 1069 5XQY 28736891 Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 8 2017-06-07 2017-08-02 Nawata, M.,Tsutsumi, H.,Kobayashi, Y.,Unzai, S.,Mine, S.,Nakamura, T.,Uegaki, K.,Kamikubo, H.,Kataoka, M.,Hamada, D. Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI FEBS J. 2017 284 3114 3127 5H6U 28768763 Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide 2016-11-15 2017-08-09 Kaneko, A.,Uenishi, K.,Maruyama, Y.,Mizuno, N.,Baba, S.,Kumasaka, T.,Mikami, B.,Murata, K.,Hashimoto, W. A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate J. Biol. Chem. 2017 292 15681 15690 5H71 28768763 Structure of alginate-binding protein AlgQ2 in complex with an alginate trisaccharide 2016-11-15 2017-08-09 Kaneko, A.,Uenishi, K.,Maruyama, Y.,Mizuno, N.,Baba, S.,Kumasaka, T.,Mikami, B.,Murata, K.,Hashimoto, W. A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate J. Biol. Chem. 2017 292 15681 15690 5WR5 28777085 Thermolysin, liganded form with cryo condition 1 2016-11-29 2017-08-16 Naitow, H.,Matsuura, Y.,Tono, K.,Joti, Y.,Kameshima, T.,Hatsui, T.,Yabashi, M.,Tanaka, R.,Tanaka, T.,Sugahara, M.,Kobayashi, J.,Nango, E.,Iwata, S.,Kunishima, N. Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation Acta Crystallogr D Struct Biol 2017 73 702 709 5WR6 28777085 Thermolysin, liganded form with cryo condition 2 2016-11-29 2017-08-16 Naitow, H.,Matsuura, Y.,Tono, K.,Joti, Y.,Kameshima, T.,Hatsui, T.,Yabashi, M.,Tanaka, R.,Tanaka, T.,Sugahara, M.,Kobayashi, J.,Nango, E.,Iwata, S.,Kunishima, N. Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation Acta Crystallogr D Struct Biol 2017 73 702 709 5GU8 28876239 Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) wild type 2016-08-26 2017-08-30 Yamada, K.D.,Kunishima, N.,Matsuura, Y.,Nakai, K.,Naitow, H.,Fukasawa, Y.,Tomii, K. Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol 2017 73 757 766 5GU9 28876239 Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138I mutant 2016-08-26 2017-08-30 Yamada, K.D.,Kunishima, N.,Matsuura, Y.,Nakai, K.,Naitow, H.,Fukasawa, Y.,Tomii, K. Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol 2017 73 757 766 5GUA 28876239 Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138Y mutant 2016-08-26 2017-08-30 Yamada, K.D.,Kunishima, N.,Matsuura, Y.,Nakai, K.,Naitow, H.,Fukasawa, Y.,Tomii, K. Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol 2017 73 757 766 5GV3 27663661 Crystal structure of the membrane-distal domain of mouse lysosome-associated membrane protein 2 (LAMP-2) 2016-09-01 2017-09-06 Terasawa, K.,Tomabechi, Y.,Ikeda, M.,Ehara, H.,Kukimoto-Niino, M.,Wakiyama, M.,Podyma-Inoue, K.A.,Rajapakshe, A.R.,Watabe, T.,Shirouzu, M.,Hara-Yokoyama, M. Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes. Biochem. Biophys. Res. Commun. 2016 479 489 495 5Y3B 28798413 Crystal structure of mouse Ccd1 DIX domain 2017-07-28 2017-09-06 Terawaki, S.I.,Fujita, S.,Katsutani, T.,Shiomi, K.,Keino-Masu, K.,Masu, M.,Wakamatsu, K.,Shibata, N.,Higuchi, Y. Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain. Sci Rep 2017 7 7739 7739 5X1D 28878401 Crystal Structure of T246A-N247A Human CRMP-2 Mutant 2017-01-25 2017-09-20 Niwa, S.,Nakamura, F.,Tomabechi, Y.,Aoki, M.,Shigematsu, H.,Matsumoto, T.,Yamagata, A.,Fukai, S.,Hirokawa, N.,Goshima, Y.,Shirouzu, M.,Nitta, R. Structural basis for CRMP2-induced axonal microtubule formation Sci Rep 2017 7 10681 10681 5H0G 28662963 Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-N,4-dimethylpentanamide 2016-10-04 2017-10-04 Yuki, H.,Kikuzato, K.,Koda, Y.,Mikuni, J.,Tomabechi, Y.,Kukimoto-Niino, M.,Tanaka, A.,Shirai, F.,Shirouzu, M.,Koyama, H.,Honma, T. Activity cliff for 7-substituted pyrrolo-pyrimidine inhibitors of HCK explained in terms of predicted basicity of the amine nitrogen. Bioorg. Med. Chem. 2017 25 4259 4264 5H0H 28662963 Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-N,N,4-trimethylpentanamide 2016-10-04 2017-10-04 Yuki, H.,Kikuzato, K.,Koda, Y.,Mikuni, J.,Tomabechi, Y.,Kukimoto-Niino, M.,Tanaka, A.,Shirai, F.,Shirouzu, M.,Koyama, H.,Honma, T. Activity cliff for 7-substituted pyrrolo-pyrimidine inhibitors of HCK explained in terms of predicted basicity of the amine nitrogen. Bioorg. Med. Chem. 2017 25 4259 4264 5X17 28886336 Crystal structure of murine CK1d in complex with ADP 2017-01-25 2017-10-04 Shinohara, Y.,Koyama, Y.M.,Ukai-Tadenuma, M.,Hirokawa, T.,Kikuchi, M.,Yamada, R.G.,Ukai, H.,Fujishima, H.,Umehara, T.,Tainaka, K.,Ueda, H.R. Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock Mol. Cell 2017 67 783 0 5X18 28886336 Crystal structure of Casein kinase I homolog 1 2017-01-25 2017-10-04 Shinohara, Y.,Koyama, Y.M.,Ukai-Tadenuma, M.,Hirokawa, T.,Kikuchi, M.,Yamada, R.G.,Ukai, H.,Fujishima, H.,Umehara, T.,Tainaka, K.,Ueda, H.R. Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock Mol. Cell 2017 67 783 0 5WRK 29661273 Mu2 subunit of the clathrin adaptor complex AP2 in complex with IRS-1 Y608 peptide 2016-12-02 2017-12-06 Yoneyama, Y.,Lanzerstorfer, P.,Niwa, H.,Umehara, T.,Shibano, T.,Yokoyama, S.,Chida, K.,Weghuber, J.,Hakuno, F.,Takahashi, S.I. IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling Elife 2018 7 0 0 5WRL 29661273 Mu2 subunit of the clathrin adaptor complex AP2 in complex with IRS-1 Y628 peptide 2016-12-02 2017-12-06 Yoneyama, Y.,Lanzerstorfer, P.,Niwa, H.,Umehara, T.,Shibano, T.,Yokoyama, S.,Chida, K.,Weghuber, J.,Hakuno, F.,Takahashi, S.I. IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling Elife 2018 7 0 0 5WRM 29661273 Mu2 subunit of the clathrin adaptor complex AP2 in complex with IRS-1 Y658 peptide 2016-12-02 2017-12-06 Yoneyama, Y.,Lanzerstorfer, P.,Niwa, H.,Umehara, T.,Shibano, T.,Yokoyama, S.,Chida, K.,Weghuber, J.,Hakuno, F.,Takahashi, S.I. IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling Elife 2018 7 0 0 5XA4 28921809 Crystal Structure of HasAp with Fe-5,15-Diazaporphyrin 2017-03-10 2017-12-06 Uehara, H.,Shisaka, Y.,Nishimura, T.,Sugimoto, H.,Shiro, Y.,Miyake, Y.,Shinokubo, H.,Watanabe, Y.,Shoji, O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group Angew. Chem. Int. Ed. Engl. 2017 56 15279 15283 5XHJ Crystal Structure of P450BM3 with 5-Cyclohexylvaleroyl-L-Tryptophan 2017-04-21 2017-12-06 Suzuki, K.,Stanfield, J.K.,Shoji, O.,Yanagisawa, S.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules CATALYSIS SCIENCE AND TECHNOLO 2017 7 3332 3338 5XIB 28921809 Crystal Structure of HasAp with Fe-5,15-Diphenylporphyrin 2017-04-26 2017-12-06 Uehara, H.,Shisaka, Y.,Nishimura, T.,Sugimoto, H.,Shiro, Y.,Miyake, Y.,Shinokubo, H.,Watanabe, Y.,Shoji, O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group Angew. Chem. Int. Ed. Engl. 2017 56 15279 15283 5XIC 28921809 Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin 2017-04-26 2017-12-06 Uehara, H.,Shisaka, Y.,Nishimura, T.,Sugimoto, H.,Shiro, Y.,Miyake, Y.,Shinokubo, H.,Watanabe, Y.,Shoji, O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group Angew. Chem. Int. Ed. Engl. 2017 56 15279 15283 5XIE 28921809 Crystal Structure of HasAp with 5-ethynyl-10,20-diphenylporphyrin 2017-04-26 2017-12-06 Uehara, H.,Shisaka, Y.,Nishimura, T.,Sugimoto, H.,Shiro, Y.,Miyake, Y.,Shinokubo, H.,Watanabe, Y.,Shoji, O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group Angew. Chem. Int. Ed. Engl. 2017 56 15279 15283 5XKB 28921809 Crystal Structure of HasAp with Fe-5,15-bisethynyl-10,20-diphenylporphyrin 2017-05-06 2017-12-06 Uehara, H.,Shisaka, Y.,Nishimura, T.,Sugimoto, H.,Shiro, Y.,Miyake, Y.,Shinokubo, H.,Watanabe, Y.,Shoji, O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group Angew. Chem. Int. Ed. Engl. 2017 56 15279 15283 5VUA 29111719 Pim1 Kinase in complex with a benzofuranone inhibitor 2017-05-18 2017-12-13 Watanabe, C.,Watanabe, H.,Fukuzawa, K.,Parker, L.J.,Okiyama, Y.,Yuki, H.,Yokoyama, S.,Nakano, H.,Tanaka, S.,Honma, T. Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach J Chem Inf Model 2017 57 2996 3010 5VUB 29111719 Pim1 Kinase in complex with a benzofuranone inhibitor 2017-05-18 2017-12-13 Watanabe, C.,Watanabe, H.,Fukuzawa, K.,Parker, L.J.,Okiyama, Y.,Yuki, H.,Yokoyama, S.,Nakano, H.,Tanaka, S.,Honma, T. Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach J Chem Inf Model 2017 57 2996 3010 5VUC 29111719 Pim1 Kinase in complex with a benzofuranone inhibitor 2017-05-18 2017-12-13 Watanabe, C.,Watanabe, H.,Fukuzawa, K.,Parker, L.J.,Okiyama, Y.,Yuki, H.,Yokoyama, S.,Nakano, H.,Tanaka, S.,Honma, T. Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach J Chem Inf Model 2017 57 2996 3010 5X5I 28608551 The X-ray crystal structure of a TetR family transcription regulator RcdA involved in the regulation of biofilm formation in Escherichia coli 2017-02-16 2017-12-27 Sugino, H.,Usui, T.,Shimada, T.,Nakano, M.,Ogasawara, H.,Ishihama, A.,Hirata, A. A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation. FEBS Lett. 2017 591 2019 2031 5XS8 29208901 Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc 2017-06-12 2018-01-17 Oiki, S.,Kamochi, R.,Mikami, B.,Murata, K.,Hashimoto, W. Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans. Sci Rep 2017 7 17005 17005 5X89 29346615 The X-ray crystal structure of subunit fusion RNA splicing endonuclease from Methanopyrus kandleri 2017-03-01 2018-01-24 Kaneta, A.,Fujishima, K.,Morikazu, W.,Hori, H.,Hirata, A. The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity Nucleic Acids Res. 2018 46 1958 1972 5XA3 28544674 Crystal Structure of P450BM3 with Benzyloxycarbonyl-L-prolyl-L-phenylalanine 2017-03-10 2018-02-21 Shoji, O.,Yanagisawa, S.,Stanfield, J.K.,Suzuki, K.,Cong, Z.,Sugimoto, H.,Shiro, Y.,Watanabe, Y. Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives. Angew. Chem. Int. Ed. Engl. 2017 56 10324 10329 5XQ3 29574769 Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum 2017-06-06 2018-03-21 Kunishige, Y.,Iwai, M.,Nakazawa, M.,Ueda, M.,Tada, T.,Nishimura, S.,Sakamoto, T. Crystal structure of exo-rhamnogalacturonan lyase from Penicillium chrysogenum as a member of polysaccharide lyase family 26 FEBS Lett. 2018 592 1378 1388 5YZ5 29479005 Crystal Structure of Human CRMP-2 with T509D-T514D-S518D-S522D mutations 2017-12-13 2018-03-21 Sumi, T.,Imasaki, T.,Aoki, M.,Sakai, N.,Nitta, E.,Shirouzu, M.,Nitta, R. Structural Insights into the Altering Function of CRMP2 by Phosphorylation. Cell Struct. Funct. 2018 43 15 23 5YZA 29479005 Crystal Structure of Human CRMP-2 with S522D mutation 2017-12-13 2018-03-21 Sumi, T.,Imasaki, T.,Aoki, M.,Sakai, N.,Nitta, E.,Shirouzu, M.,Nitta, R. Structural Insights into the Altering Function of CRMP2 by Phosphorylation. Cell Struct. Funct. 2018 43 15 23 5XSO 29636388 Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221 2017-06-14 2018-05-23 Wright, G.S.A.,Saeki, A.,Hikima, T.,Nishizono, Y.,Hisano, T.,Kamaya, M.,Nukina, K.,Nishitani, H.,Nakamura, H.,Yamamoto, M.,Antonyuk, S.V.,Hasnain, S.S.,Shiro, Y.,Sawai, H. Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system. Sci Signal 2018 11 0 0 5XT2 29636388 Crystal structures of full-length FixJ from B. japonicum crystallized in space group P212121 2017-06-16 2018-05-23 Wright, G.S.A.,Saeki, A.,Hikima, T.,Nishizono, Y.,Hisano, T.,Kamaya, M.,Nukina, K.,Nishitani, H.,Nakamura, H.,Yamamoto, M.,Antonyuk, S.V.,Hasnain, S.S.,Shiro, Y.,Sawai, H. Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system. Sci Signal 2018 11 0 0 5ZAB 29796619 Crystal structure of cf3-aequorin 2018-02-07 2018-06-06 Inouye, S.,Tomabechi, Y.,Hosoya, T.,Sekine, S.I.,Shirouzu, M. Slow luminescence kinetics of semi-synthetic aequorin: expression, purification and structure determination of cf3-aequorin. J. Biochem. 2018 164 247 255 5ZJ6 29793032 Crystal structure of HCK kinase complexed with a pyrrolo-pyrimidine inhibitor 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine 2018-03-19 2018-06-06 Katsura, K.,Tomabechi, Y.,Matsuda, T.,Yonemochi, M.,Mikuni, J.,Ohsawa, N.,Terada, T.,Yokoyama, S.,Kukimoto-Niino, M.,Takemoto, C.,Shirouzu, M. Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression. Protein Expr. Purif. 2018 150 92 99 5XV3 30081750 Crystal structure of ATG101-ATG13HORMA 2017-06-26 2018-07-04 Kim, B.-W.,Jin, Y.,Kim, J.,Kim, J.H.,Jung, J.,Kang, S.,Kim, I.Y.,Kim, J.,Cheong, H.,Song, H.K. The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation. Autophagy 2018 14 2104 2116 5YJB 29949906 LSD1-CoREST in complex with 4-[5-(piperidin-4-ylmethoxy)-2-(p-tolyl)pyridin-3-yl]benzonitrile 2017-10-10 2018-07-04 Niwa, H.,Sato, S.,Hashimoto, T.,Matsuno, K.,Umehara, T. Crystal Structure of LSD1 in Complex with 4-[5-(Piperidin-4-ylmethoxy)-2-(p-tolyl)pyridin-3-yl]benzonitrile. Molecules 2018 23 0 0 5ZIS 29845154 Crystal structure of Mn-ProtoporphyrinIX-reconstituted P450BM3 2018-03-17 2018-08-15 Omura, K.,Aiba, Y.,Onoda, H.,Stanfield, J.K.,Ariyasu, S.,Sugimoto, H.,Shiro, Y.,Shoji, O.,Watanabe, Y. Reconstitution of full-length P450BM3 with an artificial metal complex by utilising the transpeptidase Sortase A. Chem. Commun. (Camb.) 2018 54 7892 7895 5ZLH 29845154 Crystal structure of Mn-ProtoporphyrinIX-reconstituted P450BM3 2018-03-28 2018-08-15 Omura, K.,Aiba, Y.,Onoda, H.,Stanfield, J.K.,Ariyasu, S.,Sugimoto, H.,Shiro, Y.,Shoji, O.,Watanabe, Y. Reconstitution of full-length P450BM3 with an artificial metal complex by utilising the transpeptidase Sortase A. Chem. Commun. (Camb.) 2018 54 7892 7895 5YE3 30080437 Crystal structure of the complex of di-acetylated histone H4 and 2A7D9 Fab fragment 2017-09-15 2018-08-22 Handoko, L.,Kaczkowski, B.,Hon, C.C.,Lizio, M.,Wakamori, M.,Matsuda, T.,Ito, T.,Jeyamohan, P.,Sato, Y.,Sakamoto, K.,Yokoyama, S.,Kimura, H.,Minoda, A.,Umehara, T. JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states. Epigenetics 2018 13 410 431 5YE4 30080437 Crystal structure of the complex of di-acetylated histone H4 and 1A9D7 Fab fragment 2017-09-15 2018-08-22 Handoko, L.,Kaczkowski, B.,Hon, C.C.,Lizio, M.,Wakamori, M.,Matsuda, T.,Ito, T.,Jeyamohan, P.,Sato, Y.,Sakamoto, K.,Yokoyama, S.,Kimura, H.,Minoda, A.,Umehara, T. JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states. Epigenetics 2018 13 410 431 5YCG 30442991 Ancestral myoglobin aMbWp of Pakicetus relative 2017-09-07 2018-09-19 Isogai, Y.,Imamura, H.,Nakae, S.,Sumi, T.,Takahashi, K.I.,Nakagawa, T.,Tsuneshige, A.,Shirai, T. Tracing whale myoglobin evolution by resurrecting ancient proteins. Sci Rep 2018 8 16883 16883 5YCI 30442991 Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) 2017-09-07 2018-09-19 Isogai, Y.,Imamura, H.,Nakae, S.,Sumi, T.,Takahashi, K.I.,Nakagawa, T.,Tsuneshige, A.,Shirai, T. Tracing whale myoglobin evolution by resurrecting ancient proteins. Sci Rep 2018 8 16883 16883 5ZLQ 30260988 Crystal Structure of C1orf123 2018-03-29 2018-10-10 Furukawa, Y.,Lim, C.,Tosha, T.,Yoshida, K.,Hagai, T.,Akiyama, S.,Watanabe, S.,Nakagome, K.,Shiro, Y. Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain PLoS ONE 2018 13 0 0 5YV8 32348940 Structure of CaMKK2 in complex with CKI-002 2017-11-24 2018-12-05 Takaya, D.,Niwa, H.,Mikuni, J.,Nakamura, K.,Handa, N.,Tanaka, A.,Yokoyama, S.,Honma, T. Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. 2020 99 107599 107599 5YV9 32348940 Structure of CaMKK2 in complex with CKI-009 2017-11-24 2018-12-05 Takaya, D.,Niwa, H.,Mikuni, J.,Nakamura, K.,Handa, N.,Tanaka, A.,Yokoyama, S.,Honma, T. Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. 2020 99 107599 107599 5YVC 32348940 Structure of CaMKK2 in complex with CKI-012 2017-11-24 2018-12-05 Takaya, D.,Niwa, H.,Mikuni, J.,Nakamura, K.,Handa, N.,Tanaka, A.,Yokoyama, S.,Honma, T. Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. 2020 99 107599 107599 5Z0D 1.16 A-resolution crystal structure of the deoxy-form tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0E Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the Y98F mutant of the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0F Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 10 min at 298 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0H Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0M Crystal structure of copper-bound H63F-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 12 h at 298 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5ZGO 30640018 Crystal structure of APRT2 from Thermus thermophilus HB8 2018-03-09 2019-03-06 Arco, J.D.,Perez, E.,Naitow, H.,Matsuura, Y.,Kunishima, N.,Fernandez-Lucas, J. Structural and functional characterization of thermostable biocatalysts for the synthesis of 6-aminopurine nucleoside-5'-monophospate analogues. Bioresour. Technol. 2019 276 244 252 6IOS 30745373 The ligand binding domain of Mlp24 with proline 2018-10-31 2019-03-06 Takahashi, Y.,Nishiyama, S.I.,Sumita, K.,Kawagishi, I.,Imada, K. Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae. J. Bacteriol. 2019 201 0 0 5ZQP 30883102 Tankyrase-2 in complex with compound 12 2018-04-19 2019-04-03 Shirai, F.,Tsumura, T.,Yashiroda, Y.,Yuki, H.,Niwa, H.,Sato, S.,Chikada, T.,Koda, Y.,Washizuka, K.,Yoshimoto, N.,Abe, M.,Onuki, T.,Mazaki, Y.,Hirama, C.,Fukami, T.,Watanabe, H.,Honma, T.,Umehara, T.,Shirouzu, M.,Okue, M.,Kano, Y.,Watanabe, T.,Kitamura, K.,Shitara, E.,Muramatsu, Y.,Yoshida, H.,Mizutani, A.,Seimiya, H.,Yoshida, M.,Koyama, H. Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors. J. Med. Chem. 2019 62 3407 3427 5ZQR 30883102 Tankyrase-2 in complex with compound 40c 2018-04-19 2019-04-03 Shirai, F.,Tsumura, T.,Yashiroda, Y.,Yuki, H.,Niwa, H.,Sato, S.,Chikada, T.,Koda, Y.,Washizuka, K.,Yoshimoto, N.,Abe, M.,Onuki, T.,Mazaki, Y.,Hirama, C.,Fukami, T.,Watanabe, H.,Honma, T.,Umehara, T.,Shirouzu, M.,Okue, M.,Kano, Y.,Watanabe, T.,Kitamura, K.,Shitara, E.,Muramatsu, Y.,Yoshida, H.,Mizutani, A.,Seimiya, H.,Yoshida, M.,Koyama, H. Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors. J. Med. Chem. 2019 62 3407 3427 6AAD 31031143 Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mTmdZLys 2018-07-18 2019-04-17 Yanagisawa, T.,Kuratani, M.,Seki, E.,Hino, N.,Sakamoto, K.,Yokoyama, S. Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol 2019 26 936 0 6AAO 31031143 Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TCO*Lys 2018-07-18 2019-04-17 Yanagisawa, T.,Kuratani, M.,Seki, E.,Hino, N.,Sakamoto, K.,Yokoyama, S. Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol 2019 26 936 0 6AAP 31031143 Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with ZaeSeCys 2018-07-18 2019-04-17 Yanagisawa, T.,Kuratani, M.,Seki, E.,Hino, N.,Sakamoto, K.,Yokoyama, S. Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol 2019 26 936 0 6AB2 31031143 Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oClZLys 2018-07-19 2019-04-17 Yanagisawa, T.,Kuratani, M.,Seki, E.,Hino, N.,Sakamoto, K.,Yokoyama, S. Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol 2019 26 936 0 6AB8 31031143 Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with ZLys 2018-07-20 2019-04-17 Yanagisawa, T.,Kuratani, M.,Seki, E.,Hino, N.,Sakamoto, K.,Yokoyama, S. Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol 2019 26 936 0 6JJM 31118251 Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to the oligosaccharide portion of the GM2 ganglioside 2019-02-26 2019-05-22 Kubota, M.,Matsuoka, R.,Suzuki, T.,Yonekura, K.,Yanagi, Y.,Hashiguchi, T. Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus. J.Virol. 2019 93 0 0 6JJN 31118251 Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to sialyl lewisX 2019-02-26 2019-05-22 Kubota, M.,Matsuoka, R.,Suzuki, T.,Yonekura, K.,Yanagi, Y.,Hashiguchi, T. Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus. J.Virol. 2019 93 0 0 6A17 31182839 Crystal structure of CYP90B1 in complex with brassinazole 2018-06-06 2019-06-12 Fujiyama, K.,Hino, T.,Kanadani, M.,Watanabe, B.,Jae Lee, H.,Mizutani, M.,Nagano, S. Structural insights into a key step of brassinosteroid biosynthesis and its inhibition. Nat.Plants 2019 5 589 594 6J61 31204692 Crystal Structure of Thymidylate Synthase, Thy1, from Thermus thermophilus having an Extra C Terminal Domain 2019-01-12 2019-06-26 Ogawa, A.,Sampei, G.,Kawai, G. Crystal structure of the flavin-dependent thymidylate synthase Thy1 from Thermus thermophilus with an extra C-terminal domain. Acta Crystallogr.,Sect.F 2019 75 450 454 6IZX 31738758 The RNA-dependent RNA polymerase domain of dengue 2 NS5, bound with RK-0404678 2018-12-20 2019-12-25 Shimizu, H.,Saito, A.,Mikuni, J.,Nakayama, E.E.,Koyama, H.,Honma, T.,Shirouzu, M.,Sekine, S.I.,Shioda, T. Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase. Plos Negl Trop Dis 2019 13 0 0 6IZY 31738758 The RNA-dependent RNA polymerase domain of dengue 2 NS5 2018-12-20 2019-12-25 Shimizu, H.,Saito, A.,Mikuni, J.,Nakayama, E.E.,Koyama, H.,Honma, T.,Shirouzu, M.,Sekine, S.I.,Shioda, T. Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase. Plos Negl Trop Dis 2019 13 0 0 6IZZ 31738758 The RNA-dependent RNA polymerase domain of dengue 3 NS5, bound with RK-0404678 2018-12-20 2019-12-25 Shimizu, H.,Saito, A.,Mikuni, J.,Nakayama, E.E.,Koyama, H.,Honma, T.,Shirouzu, M.,Sekine, S.I.,Shioda, T. Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase. Plos Negl Trop Dis 2019 13 0 0 6J00 31738758 The RNA-dependent RNA polymerase domain of dengue 3 NS5 2018-12-20 2019-12-25 Shimizu, H.,Saito, A.,Mikuni, J.,Nakayama, E.E.,Koyama, H.,Honma, T.,Shirouzu, M.,Sekine, S.I.,Shioda, T. Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase. Plos Negl Trop Dis 2019 13 0 0 6K0V 31788942 Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with tetrasaccharides 2019-05-07 2019-12-25 Itoh, T.,Intuy, R.,Suyotha, W.,Hayashi, J.,Yano, S.,Makabe, K.,Wakayama, M.,Hibi, T. Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11. Febs J. 2020 287 2524 2543 6KGK 32166890 LSD1-CoREST-S2101 five-membered ring adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6KGL 32166890 LSD1-CoREST-S2101 N5 adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6KGM 32166890 LSD1-CoREST-S2116 five-membered ring adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6KGN 32166890 LSD1-CoREST-S2116 N5 adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6KGO 32166890 LSD1-S2157 five-membered ring adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6KGP 32166890 LSD1-S2157 N5 adduct model 2019-07-12 2020-03-25 Niwa, H.,Sato, S.,Handa, N.,Sengoku, T.,Umehara, T.,Yokoyama, S. Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors. Chemmedchem 2020 15 787 793 6LFJ 32139512 Crystal structure of mouse DCAR2 CRD domain complex with IPM2 2019-12-03 2020-03-25 Omahdi, Z.,Horikawa, Y.,Nagae, M.,Toyonaga, K.,Imamura, A.,Takato, K.,Teramoto, T.,Ishida, H.,Kakuta, Y.,Yamasaki, S. Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR. J.Biol.Chem. 2020 295 5807 5817 6KRO 32202790 Tankyrase-2 in complex with RK-582 2019-08-22 2020-04-01 Shirai, F.,Mizutani, A.,Yashiroda, Y.,Tsumura, T.,Kano, Y.,Muramatsu, Y.,Chikada, T.,Yuki, H.,Niwa, H.,Sato, S.,Washizuka, K.,Koda, Y.,Mazaki, Y.,Jang, M.K.,Yoshida, H.,Nagamori, A.,Okue, M.,Watanabe, T.,Kitamura, K.,Shitara, E.,Honma, T.,Umehara, T.,Shirouzu, M.,Fukami, T.,Seimiya, H.,Yoshida, M.,Koyama, H. Design and Discovery of an Orally Efficacious Spiroindolinone-Based Tankyrase Inhibitor for the Treatment of Colon Cancer. J.Med.Chem. 2020 63 4183 4204 6LN3 32271910 Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP 2019-12-28 2020-04-22 Shibanuma, Y.,Nemoto, N.,Yamamoto, N.,Sampei, G.I.,Kawai, G. Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP. J.Biochem. 2020 168 223 229 6M4V 32747768 Crystal structure of MBP fused split FKBP in complex with rapamycin 2020-03-09 2020-08-26 Wu, H.D.,Kikuchi, M.,Dagliyan, O.,Aragaki, A.K.,Nakamura, H.,Dokholyan, N.V.,Umehara, T.,Inoue, T. Rational design and implementation of a chemically inducible heterotrimerization system. Nat.Methods 2020 17 928 936 6M4W 32747768 Crystal structure of MBP fused split FKBP-FRB T2098L mutant in complex with rapamycin 2020-03-09 2020-08-26 Wu, H.D.,Kikuchi, M.,Dagliyan, O.,Aragaki, A.K.,Nakamura, H.,Dokholyan, N.V.,Umehara, T.,Inoue, T. Rational design and implementation of a chemically inducible heterotrimerization system. Nat.Methods 2020 17 928 936 7BRV 34094189 Bovine Pancreatic Trypsin with 4-Bromobenzamidine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BRW 34094189 Bovine Pancreatic Trypsin with 5-chlorotryptamine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BRX 34094189 Bovine Pancreatic Trypsin with 5-Methoxytryptamine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BRY 34094189 Bovine Pancreatic Trypsin with 6-Methoxytryptamine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BRZ 34094189 Bovine Pancreatic Trypsin with 2-Methyltryptamine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS0 34094189 Bovine Pancreatic Trypsin with aniline (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS1 34094189 Bovine Pancreatic Trypsin with benzamidine (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS2 34094189 Bovine Pancreatic Trypsin with serotonin (Room Temperature) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS3 34094189 Bovine Pancreatic Trypsin with 4-Bromo-benzamidine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS4 34094189 Bovine Pancreatic Trypsin with 5-Methoxytryptamine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS5 34094189 Bovine Pancreatic Trypsin with 6-Methoxytryptamine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS6 34094189 Bovine Pancreatic Trypsin with 2-Methyltryptamine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS7 34094189 Bovine Pancreatic Trypsin with aniline (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS8 34094189 Bovine Pancreatic Trypsin with Benzamidine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BS9 34094189 Bovine Pancreatic Trypsin with serotonin (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 7BSA 34094189 Bovine Pancreatic Trypsin with 5-Chlorotryptamine (Cryo) 2020-03-30 2020-08-26 Maeki, M.,Ito, S.,Takeda, R.,Ueno, G.,Ishida, A.,Tani, H.,Yamamoto, M.,Tokeshi, M. Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chem Sci 2020 11 9072 9087 6LOS 32385162 Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide. 2020-01-07 2020-09-02 Kawahara, K.,Yoshida, T.,Maruno, T.,Oki, H.,Ohkubo, T.,Koide, T.,Kobayashi, Y. Spatiotemporal regulation of PEDF signaling by type I collagen remodeling. Proc.Natl.Acad.Sci.USA 2020 117 11450 11458 6M5D 33183011 Human serum albumin (apo form) 2020-03-10 2020-11-18 Ito, S.,Senoo, A.,Nagatoishi, S.,Ohue, M.,Yamamoto, M.,Tsumoto, K.,Wakui, N. Structural Basis for the Binding Mechanism of Human Serum Albumin Complexed with Cyclic Peptide Dalbavancin. J.Med.Chem. 2020 63 14045 14053 6LDV 33303630 Structure antibody F9 in complex with methylated peptide 2019-11-23 2020-11-25 Ishii, M.,Nakakido, M.,Caaveiro, J.M.M.,Kuroda, D.,Okumura, C.J.,Maruyama, T.,Entzminger, K.,Tsumoto, K. Structural basis for antigen recognition by methylated lysine-specific antibodies. J.Biol.Chem. 2020 296 100176 100176 6LDW 33303630 Structure of antibody C9 in complex with methylated peptide 2019-11-23 2020-11-25 Ishii, M.,Nakakido, M.,Caaveiro, J.M.M.,Kuroda, D.,Okumura, C.J.,Maruyama, T.,Entzminger, K.,Tsumoto, K. Structural basis for antigen recognition by methylated lysine-specific antibodies. J.Biol.Chem. 2020 296 100176 100176 7COZ 33373636 Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-41 2020-08-05 2021-01-13 Dileep, K.V.,Sakai, N.,Ihara, K.,Kato-Murayama, M.,Nakata, A.,Ito, A.,Sivaraman, D.M.,Shin, J.W.,Yoshida, M.,Shirouzu, M.,Zhang, K.Y.J. Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors. Int.J.Biol.Macromol. 2020 170 415 423 7CP0 33373636 Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase 2020-08-05 2021-01-13 Dileep, K.V.,Sakai, N.,Ihara, K.,Kato-Murayama, M.,Nakata, A.,Ito, A.,Sivaraman, D.M.,Shin, J.W.,Yoshida, M.,Shirouzu, M.,Zhang, K.Y.J. Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors. Int.J.Biol.Macromol. 2020 170 415 423 6M5O 33521601 Co-crystal structure of human serine hydroxymethyltransferase 2 in complex with Pyridoxal 5'-phosphate (PLP) and glycodeoxycholic acid 2020-03-11 2021-01-20 Ota, T.,Senoo, A.,Shirakawa, M.,Nonaka, H.,Saito, Y.,Ito, S.,Ueno, G.,Nagatoishi, S.,Tsumoto, K.,Sando, S. Structural basis for selective inhibition of human serine hydroxymethyltransferase by secondary bile acid conjugate. Iscience 2021 24 102036 102036 6M5W 33521601 Co-crystal structure of human serine hydroxymethyltransferase 1 in complex with Pyridoxal 5'-phosphate (PLP) and glycodeoxycholic acid 2020-03-11 2021-01-20 Ota, T.,Senoo, A.,Shirakawa, M.,Nonaka, H.,Saito, Y.,Ito, S.,Ueno, G.,Nagatoishi, S.,Tsumoto, K.,Sando, S. Structural basis for selective inhibition of human serine hydroxymethyltransferase by secondary bile acid conjugate. Iscience 2021 24 102036 102036 7CLX 33574036 Crystal structure of the DOCK8 DHR-1 domain 2020-07-22 2021-02-10 Sakurai, T.,Kukimoto-Niino, M.,Kunimura, K.,Yamane, N.,Sakata, D.,Aihara, R.,Yasuda, T.,Yokoyama, S.,Shirouzu, M.,Fukui, Y.,Uruno, T. A conserved PI(4,5)P2-binding domain is critical for immune regulatory function of DOCK8. Life Sci Alliance 2021 4 0 0 7CLY 33574036 Structure of the DOCK8 DHR-1 domain crystallized with di-C8-phosphatidylinositol-(4,5)-bisphosphate 2020-07-22 2021-02-10 Sakurai, T.,Kukimoto-Niino, M.,Kunimura, K.,Yamane, N.,Sakata, D.,Aihara, R.,Yasuda, T.,Yokoyama, S.,Shirouzu, M.,Fukui, Y.,Uruno, T. A conserved PI(4,5)P2-binding domain is critical for immune regulatory function of DOCK8. Life Sci Alliance 2021 4 0 0 7CIT 34089758 Crystal structure of tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h 2020-07-08 2021-06-16 Matoba, Y.,Oda, K.,Muraki, Y.,Masuda, T. The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity. Int.J.Biol.Macromol. 2021 183 1861 1870 7EG2 34115795 Crystal structure of the apoAequorin complex with (S)-daCTZ 2021-03-24 2021-06-23 Inouye, S.,Sumida, Y.,Tomabechi, Y.,Taguchi, J.,Shirouzu, M.,Hosoya, T. Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin. Plos One 2021 16 0 0 7EG3 34115795 Crystal structure of the apoAequorin complex with (S)-HM-daCTZ 2021-03-24 2021-06-23 Inouye, S.,Sumida, Y.,Tomabechi, Y.,Taguchi, J.,Shirouzu, M.,Hosoya, T. Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin. Plos One 2021 16 0 0 7CX8 Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Tetralylamine 2020-09-01 2021-09-08 Shoji, O.,Stanfield, J.K. Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Tetralylamine at 1.70 Angstrom Resolution To Be Published 0 0 0 0 7CME Crystal structure of human P-cadherin MEC12 (X dimer) in complex with 2-(5-chloro-2-methyl-1H-indol-3-yl)ethan-1-amine (inhibitor) 2020-07-27 2021-09-15 Senoo, A.,Ito, S.,Nagatoishi, S.,Saito, Y.,Ueno, G.,Kuroda, D.,Yoshida, K.,Tashima, T.,Kudo, S.,Sando, S.,Tsumoto, K. Regulation of cadherin dimerization by chemical fragments as a trigger to inhibit cell adhesion Commun Biol 2021 4 1041 0 7CMF Crystal structure of human P-cadherin REC12 (monomer) in complex with 2-(5-chloro-2-methyl-1H-indol-3-yl)ethan-1-amine (inhibitor) 2020-07-27 2021-09-15 Senoo, A.,Ito, S.,Nagatoishi, S.,Saito, Y.,Ueno, G.,Kuroda, D.,Yoshida, K.,Tashima, T.,Kudo, S.,Sando, S.,Tsumoto, K. Regulation of cadherin dimerization by chemical fragments as a trigger to inhibit cell adhesion Commun Biol 2021 4 1041 0 7CON Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine in complex with n-Propylamine 2020-08-04 2021-09-15 Shoji, O.,Stanfield, J.K. Structure of the CYP102A1 Haem Domain with N-{2-[4-(trifluoromethoxy)phenoxy]}acetoyl-L-phenylalanine in complex with n-propylamine at 1.46 Angstrom Resolution To Be Published 0 0 0 0 7CP8 Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Indanylamine 2020-08-06 2021-09-15 Shoji, O.,Stanfield, J.K. Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Indanylamine at 1.68 Angstrom Resolution To Be Published 0 0 0 0 7D0T Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Indanylamine 2020-09-11 2021-09-15 Shoji, O.,Stanfield, J.K. Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Indanylamine at 1.74 Angstrom Resolution To Be Published 0 0 0 0 7D1F Structure of the CYP102A1 Haem Domain with N-enanthyl-L-prolyl-L-phenylalanine in complex with Methylamine 2020-09-14 2021-09-15 Shoji, O.,Stanfield, J.K. Structure of the CYP102A1 Haem Domain with N-enanthyl-L-prolyl-L-phenylalanine in complex with Methylamine at 1.45 Angstrom Resolution To Be Published 0 0 0 0 7DBO 34559526 DPBB domain of VCP-like ATPase from Thermoplasma acidophilum 2020-10-21 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DG9 34559526 DPBB domain of VCP-like ATPase from Aeropyrum pernix 2020-11-11 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DI0 34559526 Crystal structure of the rationally designed apDPBB_sym_79 protein 2020-11-18 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DI1 34559526 Crystal structure of the rationally designed mkDPBB_sym_86 protein 2020-11-18 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DVC 34559526 Crystal structure of the computationally designed reDPBB_sym1 protein 2021-01-13 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DXR 34559526 Crystal structure of the mk2h peptide homodimer. 2021-01-20 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DXU 34559526 Crystal structure of the mk2h_deltaP peptide homodimer 2021-01-20 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DXV 34559526 Crystal structure of the mk2h_deltaY peptide homodimer 2021-01-20 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DXW 34559526 Crystal structure of the mk2h_deltaMIL peptide homodimer 2021-01-20 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DXZ 34559526 Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malonate 2021-01-20 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DYC 34559526 Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malate 2021-01-21 2021-09-29 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7DVF 34559526 Crystal structure of the computationally designed reDPBB_sym2 protein 2021-01-13 2021-10-13 Yagi, S.,Padhi, A.K.,Vucinic, J.,Barbe, S.,Schiex, T.,Nakagawa, R.,Simoncini, D.,Zhang, K.Y.J.,Tagami, S. Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. 2021 143 15998 16006 7EXV 34735571 GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranoylamide 2021-05-28 2021-11-17 Maruyama, S.,Sawano, K.,Amaki, S.,Suzuki, T.,Narita, S.,Kimura, K.,Arakawa, T.,Yamada, C.,Ito, Y.,Dohmae, N.,Fujita, K.,Ishiwata, A.,Fushinobu, S. Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology 2022 32 171 180 7D8E Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09 2020-10-08 2021-12-08 Dileep, K.V.,Ihara, K.,Sakai, N.,Shirozu, M.,Zhang, K.Y.J. Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09 To Be Published 0 0 0 0 7EJL 34857854 Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-2) spike protein 2021-04-02 2022-01-26 Shimizu, K.,Iyoda, T.,Sanpei, A.,Nakazato, H.,Okada, M.,Ueda, S.,Kato-Murayama, M.,Murayama, K.,Shirouzu, M.,Harada, N.,Hidaka, M.,Fujii, S.I. Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2. Commun Biol 2021 4 1365 1365 7EJM 34857854 Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-229E) spike protein 2021-04-02 2022-01-26 Shimizu, K.,Iyoda, T.,Sanpei, A.,Nakazato, H.,Okada, M.,Ueda, S.,Kato-Murayama, M.,Murayama, K.,Shirouzu, M.,Harada, N.,Hidaka, M.,Fujii, S.I. Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2. Commun Biol 2021 4 1365 1365 7E3H Crystal structure of human acetylcholinesterase in complex with donepezil 2021-02-08 2022-02-16 Dileep, K.,Ihara, K.,Mishima-Tsumagari, C.,Kukimoto-Niino, M.,Yonemochi, M.,Hanada, K.,Shirouzu, M.,Zhang, K.Y. Crystal structure of human acetylcholinesterase in complex with tacrine: Implications for drug discovery Int.J.Biol.Macromol. 2022 210 172 181 7EIC 35732209 Crystal structure of AF9 YEATS domain in complex with H4K5acK8ac peptide 2021-03-30 2022-04-06 Kikuchi, M.,Morita, S.,Goto, M.,Wakamori, M.,Katsura, K.,Hanada, K.,Shirouzu, M.,Umehara, T. Elucidation of binding preferences of YEATS domains to site-specific acetylated nucleosome core particles. J.Biol.Chem. 2022 298 102164 102164 7EID 35732209 Crystal structure of AF9 YEATS domain in complex with H4K8acK12ac peptide 2021-03-30 2022-04-06 Kikuchi, M.,Morita, S.,Goto, M.,Wakamori, M.,Katsura, K.,Hanada, K.,Shirouzu, M.,Umehara, T. Elucidation of binding preferences of YEATS domains to site-specific acetylated nucleosome core particles. J.Biol.Chem. 2022 298 102164 102164 7EIE 35732209 Crystal structure of YEATS2 YEATS domain 2021-03-30 2022-04-06 Kikuchi, M.,Morita, S.,Goto, M.,Wakamori, M.,Katsura, K.,Hanada, K.,Shirouzu, M.,Umehara, T. Elucidation of binding preferences of YEATS domains to site-specific acetylated nucleosome core particles. J.Biol.Chem. 2022 298 102164 102164 7EIF 37844223 Crystal structure of GAS41 YEATS domain 2021-03-30 2022-04-06 Kikuchi, M.,Takase, S.,Konuma, T.,Noritsugu, K.,Sekine, S.,Ikegami, T.,Ito, A.,Umehara, T. GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA 2023 120 0 0 7EMP 35352458 Crystal Structure of HasAp Capturing Chromium Tetraphenylporphyrin 2021-04-14 2022-04-20 Shisaka, Y.,Sakakibara, E.,Suzuki, K.,Stanfield, J.K.,Onoda, H.,Ueda, G.,Hatano, M.,Sugimoto, H.,Shoji, O. Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem 2022 23 0 0 7EMQ 35352458 Crystal Structure of HasAp Capturing Manganese Tetraphenylporphyrin 2021-04-14 2022-04-20 Shisaka, Y.,Sakakibara, E.,Suzuki, K.,Stanfield, J.K.,Onoda, H.,Ueda, G.,Hatano, M.,Sugimoto, H.,Shoji, O. Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem 2022 23 0 0 7EMR 35352458 Crystal Structure of HasAp Capturing Cobalt Tetraphenylporphyrin 2021-04-14 2022-04-20 Shisaka, Y.,Sakakibara, E.,Suzuki, K.,Stanfield, J.K.,Onoda, H.,Ueda, G.,Hatano, M.,Sugimoto, H.,Shoji, O. Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem 2022 23 0 0 7EMV 35352458 Crystal Structure of the HasAp V37G Mutant Capturing Iron-5,10,15-Triphenylporphyrin 2021-04-14 2022-04-20 Shisaka, Y.,Sakakibara, E.,Suzuki, K.,Stanfield, J.K.,Onoda, H.,Ueda, G.,Hatano, M.,Sugimoto, H.,Shoji, O. Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem 2022 23 0 0 7VQS 35586426 Crystal structure of LSD1 in complex with compound 4 2021-10-20 2022-06-01 Koda, Y.,Sato, S.,Yamamoto, H.,Niwa, H.,Watanabe, H.,Watanabe, C.,Sato, T.,Nakamura, K.,Tanaka, A.,Shirouzu, M.,Honma, T.,Fukami, T.,Koyama, H.,Umehara, T. Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles. Acs Med.Chem.Lett. 2022 13 848 854 7VQT 35586426 Crystal structure of LSD1 in complex with compound 5 2021-10-20 2022-06-01 Koda, Y.,Sato, S.,Yamamoto, H.,Niwa, H.,Watanabe, H.,Watanabe, C.,Sato, T.,Nakamura, K.,Tanaka, A.,Shirouzu, M.,Honma, T.,Fukami, T.,Koyama, H.,Umehara, T. Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles. Acs Med.Chem.Lett. 2022 13 848 854 7W78 35767641 Heme exporter HrtBA in complex with Mg-AMPPNP 2021-12-04 2022-06-22 Nakamura, H.,Hisano, T.,Rahman, M.M.,Tosha, T.,Shirouzu, M.,Shiro, Y. Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7W79 35767641 Heme exporter HrtBA in complex with Mn-AMPPNP 2021-12-04 2022-06-22 Nakamura, H.,Hisano, T.,Rahman, M.M.,Tosha, T.,Shirouzu, M.,Shiro, Y. Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7W7A 35767641 Heme exporter in complex with Mn-containing protoporphyrin IX, Mn-anomalous data 2021-12-04 2022-06-22 Nakamura, H.,Hisano, T.,Rahman, M.M.,Tosha, T.,Shirouzu, M.,Shiro, Y. Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7W7D 35767641 Heme exporter HrtBA in complex with heme 2021-12-04 2022-06-22 Nakamura, H.,Hisano, T.,Rahman, M.M.,Tosha, T.,Shirouzu, M.,Shiro, Y. Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7VSX 36129943 Crystal structure of QL-nanoKAZ (Reverse mutant of nanoKAZ with L18Q and V27L) 2021-10-27 2022-08-24 Inouye, S.,Sato, J.I.,Sahara-Miura, Y.,Tomabechi, Y.,Sumida, Y.,Sekine, S.I.,Shirouzu, M.,Hosoya, T. Reverse mutants of the catalytic 19 kDa mutant protein (nanoKAZ/nanoLuc) from Oplophorus luciferase with coelenterazine as preferred substrate. Plos One 2022 17 0 0 7VP0 35038379 Crystal structure of P domain from norovirus GI.9 capsid protein. 2021-10-15 2022-08-31 Kimura-Someya, T.,Kato-Murayama, M.,Katsura, K.,Sakai, N.,Murayama, K.,Hanada, K.,Shirouzu, M.,Someya, Y. Lewis fucose is a key moiety for the recognition of histo-blood group antigens by GI.9 norovirus, as revealed by structural analysis. Febs Open Bio 2022 12 560 570 7XE1 Crystal structure of LSD2 in complex with cis-4-Br-PCPA 2022-03-29 2022-09-14 Niwa, H.,Watanabe, C.,Sato, S.,Harada, T.,Watanabe, H.,Tabusa, R.,Fukasawa, S.,Shiobara, A.,Hashimoto, T.,Ohno, O.,Nakamura, K.,Tsuganezawa, K.,Tanaka, A.,Shirouzu, M.,Honma, T.,Matsuno, K.,Umehara, T. Structure-Activity Relationship and In Silico Evaluation of cis- and trans-PCPA-Derived Inhibitors of LSD1 and LSD2 Acs Med.Chem.Lett. 2022 13 1485 1492 7XE2 Crystal structure of LSD2 in complex with trans-4-Br-PCPA 2022-03-29 2022-09-14 Niwa, H.,Watanabe, C.,Sato, S.,Harada, T.,Watanabe, H.,Tabusa, R.,Fukasawa, S.,Shiobara, A.,Hashimoto, T.,Ohno, O.,Nakamura, K.,Tsuganezawa, K.,Tanaka, A.,Shirouzu, M.,Honma, T.,Matsuno, K.,Umehara, T. Structure-Activity Relationship and In Silico Evaluation of cis- and trans-PCPA-Derived Inhibitors of LSD1 and LSD2 Acs Med.Chem.Lett. 2022 13 1485 1492 7WDT 36864192 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S 2021-12-22 2022-12-28 Katoh, T.,Yamada, C.,Wallace, M.D.,Yoshida, A.,Gotoh, A.,Arai, M.,Maeshibu, T.,Kashima, T.,Hagenbeek, A.,Ojima, M.N.,Takada, H.,Sakanaka, M.,Shimizu, H.,Nishiyama, K.,Ashida, H.,Hirose, J.,Suarez-Diez, M.,Nishiyama, M.,Kimura, I.,Stubbs, K.A.,Fushinobu, S.,Katayama, T. A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol. 2023 19 778 789 7YMR 36307380 Complex structure of lysoplasmalogen specific phopholipase D, F211L mutant with LPC 2022-07-29 2023-02-08 Hamana, H.,Yasutake, Y.,Kato-Murayama, M.,Hosaka, T.,Shirouzu, M.,Sakasegawa, S.I.,Sugimori, D.,Murayama, K. Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668. Biosci.Biotechnol.Biochem. 2022 87 74 81 7Y4A 36932164 Crystal structure of human ELMO1 RBD-RhoG complex 2022-06-14 2023-03-15 Tam, C.,Kukimoto-Niino, M.,Miyata-Yabuki, Y.,Tsuda, K.,Mishima-Tsumagari, C.,Ihara, K.,Inoue, M.,Yonemochi, M.,Hanada, K.,Matsumoto, T.,Shirouzu, M.,Zhang, K.Y.J. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 2023 6 284 284 8I5F 36848820 Crystal structure of the DHR-2 domain of DOCK10 in complex with Cdc42 (T17N mutant) 2023-01-25 2023-03-15 Kukimoto-Niino, M.,Ihara, K.,Mishima-Tsumagari, C.,Inoue, M.,Fukui, Y.,Yokoyama, S.,Shirouzu, M. Structural basis for the dual GTPase specificity of the DOCK10 guanine nucleotide exchange factor. Biochem.Biophys.Res.Commun. 2023 653 12 20 8I5V 36848820 DOCK10 mutant L1903Y complexed with Rac1 2023-01-26 2023-03-15 Kukimoto-Niino, M.,Ihara, K.,Mishima-Tsumagari, C.,Inoue, M.,Fukui, Y.,Yokoyama, S.,Shirouzu, M. Structural basis for the dual GTPase specificity of the DOCK10 guanine nucleotide exchange factor. Biochem.Biophys.Res.Commun. 2023 653 12 20 8I5W 36848820 Crystal structure of the DHR-2 domain of DOCK10 in complex with Rac1 2023-01-26 2023-03-15 Kukimoto-Niino, M.,Ihara, K.,Mishima-Tsumagari, C.,Inoue, M.,Fukui, Y.,Yokoyama, S.,Shirouzu, M. Structural basis for the dual GTPase specificity of the DOCK10 guanine nucleotide exchange factor. Biochem.Biophys.Res.Commun. 2023 653 12 20 7XRN 35974426 Ethanolamine ammonia-lyase complexed with AdoMeCbl in the presence of substrate 2022-05-10 2023-03-29 Shibata, N.,Higuchi, Y.,Krautler, B.,Toraya, T. Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry 2022 28 0 0 7XUD 36882960 Structure of G9a in complex with compound 26a 2022-05-18 2023-03-29 Nishigaya, Y.,Takase, S.,Sumiya, T.,Kikuzato, K.,Sato, T.,Niwa, H.,Sato, S.,Nakata, A.,Sonoda, T.,Hashimoto, N.,Namie, R.,Honma, T.,Umehara, T.,Shirouzu, M.,Koyama, H.,Yoshida, M.,Ito, A.,Shirai, F. Discovery of Novel Substrate-Competitive Lysine Methyltransferase G9a Inhibitors as Anticancer Agents. J.Med.Chem. 2023 66 4059 4085 8HKJ 37167731 Crystal structure of the CYP102A5 haem Domain isolated from Bacillus cereus 2022-11-27 2023-04-26 Stanfield, J.K.,Onoda, H.,Ariyasu, S.,Kasai, C.,Burfoot, E.M.,Sugimoto, H.,Shoji, O. Investigating the applicability of the CYP102A1-decoy-molecule system to other members of the CYP102A subfamily. J.Inorg.Biochem. 2023 245 112235 112235 8H1W 37030501 Serine Palmitoyltransferase from Sphingobacterium multivorum 2022-10-04 2023-08-16 Ikushiro, H.,Murakami, T.,Takahashi, A.,Katayama, A.,Sawai, T.,Goto, H.,Koolath, S.,Murai, Y.,Monde, K.,Miyahara, I.,Kamiya, N.,Yano, T. Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum. J.Biol.Chem. 2023 299 104684 104684 8HYI 37531208 Crystal structure of human P-cadherin MEC12 (X dimer) in complex with 2-(2-methyl-5-phenyl-1H-indole-3-yl)ethan-1-amine 2023-01-06 2023-08-30 Senoo, A.,Nagatoishi, S.,Kuroda, D.,Ito, S.,Ueno, G.,Caaveiro, J.M.M.,Tsumoto, K. Modulation of a conformational ensemble by a small molecule that inhibits key protein-protein interactions involved in cell adhesion. Protein Sci. 2023 32 0 0 8ILK 38036853 Crystal structure of a highly photostable and bright green fluorescent protein at pH8.5 2023-03-03 2023-10-04 Ando, R.,Shimozono, S.,Ago, H.,Takagi, M.,Sugiyama, M.,Kurokawa, H.,Hirano, M.,Niino, Y.,Ueno, G.,Ishidate, F.,Fujiwara, T.,Okada, Y.,Yamamoto, M.,Miyawaki, A. StayGold variants for molecular fusion and membrane-targeting applications. Nat.Methods 2024 21 648 656 8ILL 38036853 Crystal structure of a highly photostable and bright green fluorescent protein at pH5.6 2023-03-03 2023-10-04 Ando, R.,Shimozono, S.,Ago, H.,Takagi, M.,Sugiyama, M.,Kurokawa, H.,Hirano, M.,Niino, Y.,Ueno, G.,Ishidate, F.,Fujiwara, T.,Okada, Y.,Yamamoto, M.,Miyawaki, A. StayGold variants for molecular fusion and membrane-targeting applications. Nat.Methods 2024 21 648 656 8H7X 38396251 Crystal structure of EGFR T790M/C797S mutant in complex with brigatinib 2022-10-21 2023-10-25 Suzuki, M.,Uchibori, K.,Oh-Hara, T.,Nomura, Y.,Suzuki, R.,Takemoto, A.,Araki, M.,Matsumoto, S.,Sagae, Y.,Kukimoto-Niino, M.,Kawase, Y.,Shirouzu, M.,Okuno, Y.,Nishio, M.,Fujita, N.,Katayama, R. A macrocyclic kinase inhibitor overcomes triple resistant mutations in EGFR-positive lung cancer. NPJ Precis Oncol 2024 8 46 46 8IIY 37844223 Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K14ac peptide 2023-02-24 2023-11-01 Kikuchi, M.,Takase, S.,Konuma, T.,Noritsugu, K.,Sekine, S.,Ikegami, T.,Ito, A.,Umehara, T. GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8IIZ 37844223 Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K27ac peptide 2023-02-24 2023-11-01 Kikuchi, M.,Takase, S.,Konuma, T.,Noritsugu, K.,Sekine, S.,Ikegami, T.,Ito, A.,Umehara, T. GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8IJ0 37844223 Crystal structure of GAS41 YEATS domain in complex with H3K9ac peptide 2023-02-24 2023-11-01 Kikuchi, M.,Takase, S.,Konuma, T.,Noritsugu, K.,Sekine, S.,Ikegami, T.,Ito, A.,Umehara, T. GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8JBD 37873935 Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB 2023-05-08 2023-11-15 Nemoto, N.,Kawai, G.,Sampei, G.I. Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8. Acta Crystallogr.,Sect.F 2023 79 278 284 8IJU 38225262 ATP-dependent RNA helicase DDX39A (URH49delta41) 2023-02-28 2024-01-24 Fujita, K.I.,Ito, M.,Irie, M.,Harada, K.,Fujiwara, N.,Ikeda, Y.,Yoshioka, H.,Yamazaki, T.,Kojima, M.,Mikami, B.,Mayeda, A.,Masuda, S. Structural differences between the closely related RNA helicases, UAP56 and URH49, fashion distinct functional apo-complexes. Nat Commun 2024 15 455 455 8WKO Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the closed form 2023-09-28 2024-02-14 Matoba, Y.,Oda, K.,Wataeda, M.,Matsuo, K. Allosteric regulation of an acidophilic O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum To Be Published 0 0 0 0 8WKR Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form 2023-09-28 2024-02-14 Matoba, Y.,Oda, K.,Wataeda, M.,Matsuo, K. Allosteric regulation of an acidophilic O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum To Be Published 0 0 0 0 8J5B Crystal structure of P domain from norovirus GI.4 capsid protein. 2023-04-21 2024-04-24 Katsura, K. Crystal structure of P domain from norovirus GI.4 capsid protein. To Be Published 0 0 0 0