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Crystal structure of non-allosteric L-lactate dehydrogenase from Lactobacillus pentosus at 2.3 A resolution: specific interactions at subunit interfaces. Proteins 2002 46 206 214 1IR1 11866526 Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate 2001-08-31 2002-03-13 Mizohata, E.,Matsumura, H.,Okano, Y.,Kumei, M.,Takuma, H.,Onodera, J.,Kato, K.,Shibata, N.,Inoue, T.,Yokota, A.,Kai, Y. Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J.Mol.Biol. 2002 316 679 691 1JXV 11835509 Crystal Structure of Human Nucleoside Diphosphate Kinase A 2001-09-10 2002-04-10 Min, K.,Song, H.K.,Chang, C.,Kim, S.Y.,Lee, K.J.,Suh, S.W. Crystal structure of human nucleoside diphosphate kinase A, a metastasis suppressor. Proteins 2002 46 340 342 1IMJ 14672934 CRYSTAL STRUCTURE OF THE HUMAN CCG1/TAFII250-INTERACTING FACTOR B (CIB) 2001-05-11 2002-05-11 Padmanabhan, B.,Kuzuhara, T.,Adachi, N.,Horikoshi, M. The crystal structure of CCG1/TAF(II)250-interacting factor B (CIB) J.Biol.Chem. 2004 279 9615 9624 1JF5 11527532 CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2 MUTANT F286A 2001-06-20 2002-05-22 Ohtaki, A.,Kondo, S.,Shimura, Y.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES. 2001 334 309 313 1JF6 11527532 Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y 2001-06-20 2002-05-22 Ohtaki, A.,Kondo, S.,Shimura, Y.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES. 2001 334 309 313 1IRI 12054796 Crystal structure of human autocrine motility factor complexed with an inhibitor 2001-10-08 2002-06-05 Tanaka, N.,Haga, A.,Uemura, H.,Akiyama, H.,Funasaka, T.,Nagase, H.,Raz, A.,Nakamura, K.T. Inhibition mechanism of cytokine activity of human autocrine motility factor examined by crystal structure analyses and site-directed mutagenesis studies. J.Mol.Biol. 2002 318 985 997 1JFL 12051922 CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA 2001-06-21 2002-06-05 Liu, L.,Iwata, K.,Kita, A.,Kawarabayasi, Y.,Yohda, M.,Miki, K. Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization. J.Mol.Biol. 2002 319 479 489 1JI1 12051850 Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 2001-06-28 2002-06-05 Kamitori, S.,Abe, A.,Ohtaki, A.,Kaji, A.,Tonozuka, T.,Sakano, Y. Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol. 2002 318 443 453 1JI2 12051850 Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2 2001-06-28 2002-06-05 Kamitori, S.,Abe, A.,Ohtaki, A.,Kaji, A.,Tonozuka, T.,Sakano, Y. Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol. 2002 318 443 453 1IX6 12488449 Aspartate Aminotransferase Active Site Mutant V39F 2002-06-14 2002-07-03 Hayashi, H.,Mizuguchi, H.,Miyahara, I.,Nakajima, Y.,Hirotsu, K.,Kagamiyama, H. Conformational change in aspartate aminotransferase on substrate binding induces strain in the catalytic group and enhances catalysis J.BIOL.CHEM. 2003 278 9481 9488 1IU1 12042876 Crystal structure of human gamma1-adaptin ear domain 2002-02-19 2002-07-10 Nogi, T.,Shiba, Y.,Kawasaki, M.,Shiba, T.,Matsugaki, N.,Igarashi, N.,Suzuki, M.,Kato, R.,Takatsu, H.,Nakayama, K.,Wakatsuki, S. Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain. Nat.Struct.Biol. 2002 9 527 531 1GZJ 12123813 Structure of Thermoascus aurantiacus family 5 endoglucanase 2002-05-23 2002-08-06 Lo Leggio, L.,Larsen, S. The 1.62 A Structure of Thermoascus Aurantiacus Endoglucanase: Completing the Structural Picture of Subfamilies in Glycoside Hydrolase Family 5 FEBS Lett. 2002 523 103 108 1ITK 12172540 Crystal structure of catalase-peroxidase from Haloarcula marismortui 2002-01-18 2002-08-28 Yamada, Y.,Fujiwara, T.,Sato, T.,Igarashi, N.,Tanaka, N. The 2.0 A crystal structure of catalase-peroxidase from Haloarcula marismortui. Nat.Struct.Biol. 2002 9 691 695 1IS3 12206768 LACTOSE AND MES-LIGANDED CONGERIN II 2001-11-12 2002-09-18 Shirai, T.,Matsui, Y.,Shionyu-Mitsuyama, C.,Yamane, T.,Kamiya, H.,Ishii, C.,Ogawa, T.,Muramoto, K. Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL. 2002 321 879 889 1IUO 12192074 meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with acetates 2002-03-06 2002-09-18 Fushinobu, S.,Saku, T.,Hidaka, M.,Jun, S.-Y.,Nojiri, H.,Yamane, H.,Shoun, H.,Omori, T.,Wakagi, T. Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI. 2002 11 2184 2195 1IRE 11700034 Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila 2001-10-01 2002-10-01 Miyanaga, A.,Fushinobu, S.,Ito, K.,Wakagi, T. Crystal structure of cobalt-containing nitrile hydratase. Biochem.Biophys.Res.Commun. 2001 288 1169 1174 1MC8 12147694 Crystal Structure of Flap Endonuclease-1 R42E mutant from Pyrococcus horikoshii 2002-08-06 2002-10-16 Matsui, E.,Musti, K.V.,Abe, J.,Yamazaki, K.,Matsui, I.,Harata, K. Molecular Structure and Novel DNA Binding Sites Located in Loops of Flap Endonuclease-1 from Pyrococcus horikoshii J.BIOL.CHEM. 2002 277 37840 37847 1KJO Thermolysin complexed with Z-L-Threonine (benzyloxycarbonyl-L-Threonine) 2001-12-05 2002-12-05 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure of Thermolysin in complex with its inhibitors To be Published 0 0 0 0 1IYO 12221102 Toho-1 beta-Lactamase In Complex With Cefotaxime 2002-09-04 2002-12-11 Shimamura, T.,Ibuka, A.,Fushinobu, S.,Wakagi, T.,Ishiguro, M.,Ishii, Y.,Matsuzawa, H. Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. J.Biol.Chem. 2002 277 46601 46608 1IYP 12221102 Toho-1 beta-Lactamase In Complex With Cephalothin 2002-09-04 2002-12-11 Shimamura, T.,Ibuka, A.,Fushinobu, S.,Wakagi, T.,Ishiguro, M.,Ishii, Y.,Matsuzawa, H. Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. J.Biol.Chem. 2002 277 46601 46608 1IYQ 12221102 Toho-1 beta-Lactamase In Complex With Benzylpenicillin 2002-09-04 2002-12-11 Shimamura, T.,Ibuka, A.,Fushinobu, S.,Wakagi, T.,Ishiguro, M.,Ishii, Y.,Matsuzawa, H. Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. J.Biol.Chem. 2002 277 46601 46608 1KL6 Thermolysin complexed with Z-L-Alanine (benzyloxycarbonyl-L-Alanine) 2001-12-11 2002-12-11 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of Thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1KOL 12445786 Crystal structure of formaldehyde dehydrogenase 2001-12-21 2002-12-11 Tanaka, N.,Kusakabe, Y.,Ito, K.,Yoshimoto, T.,Nakamura, K.T. Crystal Structure of Formaldehyde Dehydrogenase from Pseudomonas putida: the Structural Origin of the Tightly Bound Cofactor in Nicotinoprotein Dehydrogenases J.mol.biol. 2002 324 519 533 1ISP 12077437 Crystal structure of Bacillus subtilis lipase at 1.3A resolution 2001-12-19 2002-12-19 Kawasaki, K.,Kondo, H.,Suzuki, M.,Ohgiya, S.,Tsuda, S. Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution. Acta Crystallogr.,Sect.D 2002 58 1168 1174 1L2L 12237466 Crystal structure of ADP-dependent glucokinase from a Pyrococcus Horikoshii 2002-02-22 2002-12-30 Tsuge, H.,Sakuraba, H.,Kobe, T.,Kujime, A.,Katunuma, N.,Ohshima, T. Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase PROTEIN SCI. 2002 11 2456 2463 1KRO Thermolysin complexed with Z-D-Threonine (benzyloxycarbonyl-D-Threonine) 2002-01-10 2003-01-10 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1KS7 Thermolysin complexed with Z-D-Aspartic acid (benzyloxycarbonyl-D-Aspartic acid) 2002-01-11 2003-01-11 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1J1O 12444085 Crystal Structure of HyHEL-10 Fv mutant LY50F complexed with hen egg white lysozyme 2002-12-13 2003-01-14 Yokota, A.,Tsumoto, K.,Shiroishi, M.,Kondo, H.,Kumagai, I. The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM. 2003 278 5410 5418 1J1P 12444085 Crystal structure of HyHEL-10 Fv mutant LS91A complexed with hen egg white lysozyme 2002-12-13 2003-01-14 Yokota, A.,Tsumoto, K.,Shiroishi, M.,Kondo, H.,Kumagai, I. The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM. 2003 278 5410 5418 1J1X 12444085 Crystal Structure of HyHEL-10 Fv mutant LS93A complexed with hen egg white lysozyme 2002-12-20 2003-01-14 Yokota, A.,Tsumoto, K.,Shiroishi, M.,Kondo, H.,Kumagai, I. The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM. 2003 278 5410 5418 1KTO Thermolysin complexed with Z-D-Alanine (benzyloxycarbonyl-D-Alanine) 2002-01-17 2003-01-17 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1KW3 12206778 Crystal structure of 2,3-dihydroxybiphenyal dioxygenase (BphC) at 1.45 A resolution 2002-01-28 2003-01-28 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1KW6 12206778 Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 1.45 A resolution 2002-01-28 2003-01-28 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1KW8 12206778 Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex 2002-01-29 2003-01-29 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1KW9 12206778 Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution 2002-01-29 2003-01-29 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1IQX 12537504 CRYSTAL STRUCTURE OF COBALT-SUBSTITUTED AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS 2001-08-27 2003-02-04 Kishishita, S.,Okajima, T.,Kim, M.,Yamaguchi, H.,Hirota, S.,Suzuki, S.,Kuroda, S.,Tanizawa, K.,Mure, M. Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes J.AM.CHEM.SOC. 2003 125 1041 1055 1IJ5 12517342 METAL-FREE STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD 2001-04-25 2003-02-11 Iwasaki, W.,Sasaki, H.,Nakamura, A.,Kohama, K.,Tanokura, M. Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum Structure 2003 11 75 85 1IJ6 12517342 CA2+-BOUND STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD 2001-04-25 2003-02-11 Iwasaki, W.,Sasaki, H.,Nakamura, A.,Kohama, K.,Tanokura, M. Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum Structure 2003 11 75 85 1QIC 10422833 CRYSTAL STRUCTURE OF STROMELYSIN CATALYTIC DOMAIN 1999-06-11 2003-02-11 Pavlovsky, A.G.,Williams, M.G.,Ye, Q.-Z.,Ortwine, D.F.,Purchase II, C.F.,White, A.D.,Dhanaraj, V.,Roth, B.D.,Johnson, L.L.,Hupe, D.J.,Humblet, C.,Blundell, T.L. X-ray structure of human stromelysin catalytic domain complexed with nonpeptide inhibitors: implications for inhibitor selectivity Protein Sci. 1999 8 1455 1462 1IVI Crystal Structure of pig dihydrolipoamide dehydrogenase 2002-03-15 2003-03-15 Toyoda, T.,Kobayashi, R.,Sekiguchi, T.,Koike, K.,Koike, M.,Takenaka, A. Crystallization and preliminary X-ray analysis of pig E3, lipoamide dehydrogenase. Acta Crystallogr.,Sect.D 1998 54 982 985 1N7K 12529358 Unique tetrameric structure of deoxyribose phosphate aldolase from Aeropyrum pernix 2002-11-15 2003-03-25 Sakuraba, H.,Tsuge, H.,Shimoya, I.,Kawakami, R.,Goda, S.,Kawarabayasi, Y.,Katunuma, N.,Ago, H.,Miyano, M.,Ohshima, T. The First Crystal Structure of Archaeal Aldolase. UNIQUE TETRAMERIC STRUCTURE of 2-DEOXY-D-RIBOSE-5-PHOSPHATE ALDOLASE FROM THE HYPERTHERMOPHILIC ARCHAEA Aeropyrum pernix. J.Biol.Chem. 2003 278 10799 10806 1I0E 11517911 CRYSTAL STRUCTURE OF CREATINE KINASE FROM HUMAN MUSCLE 2001-01-29 2003-04-01 Shen, Y.Q.,Tang, L.,Zhou, H.M.,Lin, Z.J. Structure of human muscle creatine kinase. Acta Crystallogr.,Sect.D 2001 57 1196 1200 1UBZ 12720276 Crystal structure of Glu102-mutant human lysozyme doubly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine 2003-04-07 2003-04-22 Muraki, M.,Harata, K. X-ray structural analysis of the ligand-recognition mechanism in the dual-affinity labeling of c-type lysozyme with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine J.MOL.RECOG. 2003 16 72 82 1O3Y 12679809 Crystal structure of mouse ARF1 (delta17-Q71L), GTP form 2003-05-08 2003-05-20 Shiba, T.,Kawasaki, M.,Takatsu, H.,Nogi, T.,Matsugaki, N.,Igarashi, N.,Suzuki, M.,Kato, R.,Nakayama, K.,Wakatsuki, S. Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport Nat.Struct.Biol. 2003 10 386 393 1IS1 12411440 Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus 2001-11-05 2003-06-17 Nakano, H.,Yoshida, T.,Uchiyama, S.,Kawachi, M.,Matsuo, H.,Kato, T.,Ohshima, A.,Yamaichi, Y.,Honda, T.,Kato, H.,Yamagata, Y.,Ohkubo, T.,Kobayashi, Y. Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium J.BIOL.CHEM. 2003 278 3427 3436 1IXC 12706716 Crystal structure of CbnR, a LysR family transcriptional regulator 2002-06-18 2003-06-18 Muraoka, S.,Okumura, R.,Ogawa, N.,Nonaka, T.,Miyashita, K.,Senda, T. Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol. 2003 328 555 566 1J2Y 12784220 Crystal structure of the type II 3-dehydroquinase 2003-01-15 2003-06-24 Lee, B.I.,Kwak, J.E.,Suh, S.W. Crystal structure of the type II 3-dehydroquinase from Helicobacter pylori Proteins 2003 51 616 617 1M71 12427018 Crystal structure of a Monoclonal Fab Specific for Shigella Flexneri Y lipopolysaccharide 2002-07-18 2003-07-22 Vyas, N.K.,Vyas, M.N.,Chervenak, M.C.,Johnson, M.A.,Pinto, B.M.,Bundle, D.R.,Quiocho, F.A. Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodyanamics Biochemistry 2002 41 13575 13586 1M7D 12427018 Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide 2002-07-19 2003-07-22 Vyas, N.K.,Vyas, M.N.,Chervenak, M.C.,Johnson, M.A.,Pinto, B.M.,Bundle, D.R.,Quiocho, F.A. Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics Biochemistry 2002 41 13575 13586 1M7I 12427018 CRYSTAL STRUCTURE OF A MONOCLONAL FAB SPECIFIC FOR SHIGELLA FLEXNERI Y LIPOPOLYSACCHARIDE COMPLEXED WITH A PENTASACCHARIDE 2002-07-19 2003-07-22 Vyas, N.K.,Vyas, M.N.,Chervenak, M.C.,Johnson, M.A.,Pinto, B.M.,Bundle, D.R.,Quiocho, F.A. Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics Biochemistry 2002 41 13575 13586 1B5O 11432784 THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE SINGLE MUTANT 1 1999-01-07 2003-09-02 Ura, H.,Nakai, T.,Kawaguchi, S.I.,Miyahara, I.,Hirotsu, K.,Kuramitsu, S. Substrate recognition mechanism of thermophilic dual-substrate enzyme J.BIOCHEM.(TOKYO) 2001 130 89 98 1B5P 11432784 THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1 1999-01-07 2003-09-02 Ura, H.,Nakai, T.,Kawaguchi, S.I.,Miyahara, I.,Hirotsu, K.,Kuramitsu, S. Substrate recognition mechanism of thermophilic dual-substrate enzyme J.BIOCHEM.(TOKYO) 2001 130 89 98 5BJ3 11432784 THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 1 1999-01-11 2003-09-02 Ura, H.,Nakai, T.,Kawaguchi, S.I.,Miyahara, I.,Hirotsu, K.,Kuramitsu, S. Substrate recognition mechanism of thermophilic dual-substrate enzyme J.BIOCHEM.(TOKYO) 2001 130 89 98 5BJ4 11432784 THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 1999-01-11 2003-09-02 Ura, H.,Nakai, T.,Kawaguchi, S.I.,Miyahara, I.,Hirotsu, K.,Kuramitsu, S. Substrate recognition mechanism of thermophilic dual-substrate enzyme J.BIOCHEM.(TOKYO) 2001 130 89 98 1GIK 12615543 POKEWEED ANTIVIRAL PROTEIN FROM SEEDS 2001-02-07 2003-09-30 Zeng, Z.H.,He, X.L.,Li, H.M.,Hu, Z.,Wang, D.C. Crystal structure of pokeweed antiviral protein with well-defined sugars from seeds at 1.8 angstrom resolution J.Struct.Biol. 2003 141 171 178 1ISE Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly 2001-11-30 2003-10-07 Nakano, H.,Yoshida, T.,Oka, S.,Uchiyama, S.,Nishina, K.,Ohkubo, T.,Kato, H.,Yamagata, Y.,Kobayashi, Y. Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly To be Published 0 0 0 0 1J2L 14499613 Crystal structure of the disintegrin, trimestatin 2003-01-06 2003-10-07 Fujii, Y.,Okuda, D.,Fujimoto, Z.,Horii, T.,Morita, T.,Mizuno, H. Crystal Structure of Trimestatin, a Disintegrin Containing a Cell Adhesion Recognition Motif RGD J.Mol.Biol. 2003 332 1115 1122 1J30 14529281 The crystal structure of sulerythrin, a rubrerythrin-like protein from a strictly aerobic and thermoacidiphilic archaeon 2003-01-16 2003-10-14 Fushinobu, S.,Shoun, H.,Wakagi, T. The Crystal Structure of Sulerythrin, A Rubrerythrin-like Protein from A Strictly Aerobic Archaeon, Sulfolobus tokodaii strain 7, shows unexpected domain swapping Biochemistry 2003 42 11707 11715 1UF2 14527391 The Atomic Structure of Rice dwarf Virus (RDV) 2003-05-23 2003-10-14 Nakagawa, A.,Miyazaki, N.,Taka, J.,Naitow, H.,Ogawa, A.,Fujimoto, Z.,Mizuno, H.,Higashi, T.,Watanabe, Y.,Omura, T.,Cheng, R.H.,Tsukihara, T. The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure 2003 11 1227 1238 1IST Crystal structure of yeast cyclophilin A, CPR1 2001-12-25 2003-11-18 Kashima, A.,Yoshikawa-Fujioka, S.,Hayano, T.,Takahashi, N.,Konno, M. Turns are Essential in the Folding of the Globular Beta-Barrel Structure of Yeast Cyclophilin A, CPR1 To be Published 0 0 0 0 1IST Crystal structure of yeast cyclophilin A, CPR1 2001-12-25 2003-11-18 Kashima, A.,Yoshikawa-Fujioka, S.,Hayano, T.,Takahashi, N.,Konno, M. Turns are Essential in the Folding of the Globular Beta-Barrel Structure of Yeast Cyclophilin A, CPR1 To be Published 0 0 0 0 1J1C 14993667 Binary complex structure of human tau protein kinase I with ADP 2002-12-03 2003-12-03 Aoki, M.,Yokota, T.,Sugiura, I.,Sasaki, C.,Hasegawa, T.,Okumura, C.,Ishiguro, K.,Kohno, T.,Sugio, S.,Matsuzaki, T. Structural insight into nucleotide recognition in tau-protein kinase I/glycogen synthase kinase 3 beta. Acta Crystallogr.,Sect.D 2004 60 439 446 1J05 The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment 2002-11-01 2003-12-16 Kondo, H.,Nishimura, Y.,Shiroishi, M.,Asano, R.,Noro, N.,Tsumoto, K.,Kumagai, I. The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment To be Published 0 0 0 0 1UE2 14684897 Crystal structure of d(GC38GAAAGCT) 2003-05-08 2004-01-13 Sunami, T.,Kondo, J.,Hirao, I.,Watanabe, K.,Miura, K.I.,Takenaka, A. Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure. Acta Crystallogr.,Sect.D 2004 60 90 96 1J2A 15355356 Structure of E. coli cyclophilin B K163T mutant 2002-12-26 2004-02-10 Konno, M.,Sano, Y.,Okudaira, K.,Kawaguchi, Y.,Yamagishi-Ohmori, Y.,Fushinobu, S.,Matsuzawa, H. Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer Eur.J.Biochem. 2004 271 3794 3803 1V9E 15039588 Crystal Structure Analysis of Bovine Carbonic Anhydrase II 2004-01-26 2004-02-10 Saito, R.,Sato, T.,Ikai, A.,Tanaka, N. Structure of bovine carbonic anhydrase II at 1.95 A resolution. Acta Crystallogr.,Sect.D 2004 60 792 795 1V9I Crystal Structure Analysis of the site specific mutant (Q253C) of bovine carbonic anhydrase II 2004-01-26 2004-02-10 Saito, R.,Sato, T.,Ikai, A.,Tanaka, N. Crystal Structure Analysis of the site specific mutant (Q253C) of bovine carbonic anhydrase II To be Published 0 0 0 0 1J3Q Crystal structure of Thermococcus litoralis phosphogrucose isomerase soaked with FeSO4 2003-02-11 2004-02-24 Jeong, J.-J.,Fushinobu, S.,Ito, S.,Hidaka, M.,Shoun, H.,Wakagi, T. Crystal structure of a novel cupin-type phosphoglucose isomerase To be Published 0 0 0 0 1UA4 12909015 Crystal Structure of an ADP-dependent Glucokinase from Pyrococcus furiosus 2003-02-27 2004-02-27 Ito, S.,Fushinobu, S.,Jeong, J.J.,Yoshioka, I.,Koga, S.,Shoun, H.,Wakagi, T. Crystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinase J.Mol.Biol. 2003 331 871 883 1UA6 12709438 Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex 2003-02-28 2004-03-09 Kumagai, I.,Nishimiya, Y.,Kondo, H.,Tsumoto, K. Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10 J.Biol.Chem. 2003 278 24929 24936 1UAC 12709438 Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME 2003-03-08 2004-03-23 Kumagai, I.,Nishimiya, Y.,Kondo, H.,Tsumoto, K. Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10 J.BIOL.CHEM. 2003 278 24929 24936 1ULN 15039554 Crystal Structure of Pokeweed Lectin-D1 2003-09-16 2004-04-13 Fujii, T.,Hayashida, M.,Hamasu, M.,Ishiguro, M.,Hata, Y. Structures of two lectins from the roots of pokeweed (Phytolacca americana). Acta Crystallogr.,Sect.D 2004 60 665 673 1V6V 14670957 Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose 2003-12-04 2004-04-27 Fujimoto, Z.,Kaneko, S.,Kuno, A.,Kobayashi, H.,Kusakabe, I.,Mizuno, H. Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86 J.Biol.Chem. 2004 279 9606 9614 1R4Q 15075327 Shiga toxin 2003-10-07 2004-05-11 Fraser, M.E.,Fujinaga, M.,Cherney, M.M.,Melton-Celsa, A.R.,Twiddy, E.M.,O'Brien, A.D.,James, M.N.G. 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X-ray Structures of NADPH-dependent Carbonyl Reductase from Sporobolomyces salmonicolor Provide Insights into Stereoselective Reductions of Carbonyl Compounds J.Mol.Biol. 2005 352 551 558 2ARS 16141198 Crystal structure of lipoate-protein ligase A From Thermoplasma acidophilum 2005-08-22 2005-10-04 Kim, D.J.,Kim, K.H.,Lee, H.H.,Lee, S.J.,Ha, J.Y.,Yoon, H.J.,Suh, S.W. Crystal structure of lipoate-protein ligase A bound with the activated intermediate: insights into interaction with lipoyl domains J.Biol.Chem. 2005 280 38081 38089 1WRD 16199040 Crystal structure of Tom1 GAT domain in complex with ubiquitin 2004-10-14 2005-10-11 Akutsu, M.,Kawasaki, M.,Katoh, Y.,Shiba, T.,Yamaguchi, Y.,Kato, R.,Kato, K.,Nakayama, K.,Wakatsuki, S. Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. 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Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA Biochem.Biophys.Res.Commun. 2007 355 122 128 1X1T 16325199 Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi Complexed with NAD+ 2005-04-13 2006-01-10 Ito, K.,Nakajima, Y.,Ichihara, E.,Ogawa, K.,Katayama, N.,Nakashima, K.,Yoshimoto, T. d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme J.Mol.Biol. 2006 355 722 733 2A6V 16439369 Crystal structure of Emp46p carbohydrate recognition domain (CRD), potassium-bound form 2005-07-04 2006-01-31 Satoh, T.,Sato, K.,Kanoh, A.,Yamashita, K.,Yamada, Y.,Igarashi, N.,Kato, R.,Nakano, A.,Wakatsuki, S. Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. 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Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem. 2006 281 10410 10419 2A71 16439369 Crystal structure of Emp47p carbohydrate recognition domain (CRD), orthorhombic crystal form 2005-07-04 2006-01-31 Satoh, T.,Sato, K.,Kanoh, A.,Yamashita, K.,Yamada, Y.,Igarashi, N.,Kato, R.,Nakano, A.,Wakatsuki, S. Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem. 2006 281 10410 10419 2DCY 16467302 Crystal structure of Bacillus subtilis family-11 xylanase 2006-01-18 2006-02-07 Miyazaki, K.,Takenouchi, M.,Kondo, H.,Noro, N.,Suzuki, M.,Tsuda, S. Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution J.Biol.Chem. 2006 281 10236 10242 1WY9 17011575 Crystal structure of microglia-specific protein, Iba1 2005-02-09 2006-02-21 Yamada, M.,Ohsawa, K.,Imai, Y.,Kohsaka, S.,Kamitori, S. X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding J.Mol.Biol. 2006 364 449 457 1WY9 17011575 Crystal structure of microglia-specific protein, Iba1 2005-02-09 2006-02-21 Yamada, M.,Ohsawa, K.,Imai, Y.,Kohsaka, S.,Kamitori, S. X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding J.Mol.Biol. 2006 364 449 457 2C4V 16480265 H. pylori type II DHQase in complex with citrate 2005-10-24 2006-02-22 Robinson, D.A.,Stewart, K.A.,Price, N.C.,Chalk, P.A.,Coggins, J.R.,Lapthorn, A.J. Crystal Structures of Helicobacter Pylori Type II Dehydroquinase Inhibitor Complexes: New Directions for Inhibitor Design. J.Med.Chem. 2006 49 1282 0 1WZC 19018103 Crystal structure of Pyrococcus horikoshii mannosyl-3-phosphoglycerate phosphatase complexed with MG2+ and phosphate 2005-03-04 2006-02-28 Kawamura, T.,Watanabe, N.,Tanaka, I. Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii. Acta Crystallogr.,Sect.D 2008 64 1267 1276 1X2R 16507366 Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2 2005-04-26 2006-03-07 Padmanabhan, B.,Tong, K.I.,Ohta, T.,Nakamura, Y.,Scharlock, M.,Ohtsuji, M.,Kang, M.-I.,Kobayashi, A.,Yokoyama, S.,Yamamoto, M. Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer Mol.Cell 2006 21 689 700 2G3T 16544326 Crystal structure of human spermidine/spermine N1-acetyltransferase (hSSAT) 2006-02-21 2006-03-07 Zhu, Y.Q.,Zhu, D.Y.,Yin, L.,Zhang, Y.,Vonrhein, C.,Wang, D.C. 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The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue Febs J. 2011 278 2387 2394 2D2X 17879343 Crystal structure of 2-deoxy-scyllo-inosose synthase 2005-09-20 2006-10-03 Nango, E.,Kumasaka, T.,Hirayama, T.,Tanaka, N.,Eguchi, T. Structure of 2-deoxy-scyllo-inosose synthase, a key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics, in complex with a mechanism-based inhibitor and NAD+ Proteins 2008 70 517 527 2D58 17011575 Human microglia-specific protein Iba1 2005-10-31 2006-10-10 Yamada, M.,Ohsawa, K.,Imai, Y.,Kohsaka, S.,Kamitori, S. X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding J.Mol.Biol. 2006 364 449 457 2D5K 25227518 Crystal structure of Dps from Staphylococcus aureus 2005-11-02 2006-10-17 Ushijima, Y.,Ohniwa, R.L.,Maruyama, A.,Saito, S.,Tanaka, Y.,Morikawa, K. Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages FEMS Microbiol. Lett. 2014 360 144 151 2H06 16939420 Crystal structure of human phosphoribosyl pyrophosphate synthetase 1 2006-05-14 2006-10-24 Li, S.,Lu, Y.,Peng, B.,Ding, J. Crystal structure of human phosphoribosylpyrophosphate synthetase 1 reveals a novel allosteric site Biochem.J. 2007 401 39 47 2H08 16939420 crystal structure of human phosphoribosyl pyrophosphate synthetase 1 mutant Y146M 2006-05-14 2006-10-24 Li, S.,Lu, Y.,Peng, B.,Ding, J. Crystal structure of human phosphoribosylpyrophosphate synthetase 1 reveals a novel allosteric site Biochem.J. 2007 401 39 47 2D7E 17464287 Crystal structure of N-terminal domain of PriA from E.coli 2005-11-18 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2DSD 17052728 Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and AMP 2006-06-28 2006-11-14 Zha, M.,Zhong, C.,Peng, Y.,Hu, H.,Ding, J. Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol. 2006 364 1021 1033 2F5J 17008723 Crystal structure of MRG domain from human MRG15 2005-11-26 2006-11-14 Zhang, P.,Zhao, J.,Wang, B.,Du, J.,Lu, Y.,Chen, J.,Ding, J. The MRG domain of human MRG15 uses a shallow hydrophobic pocket to interact with the N-terminal region of PAM14 Protein Sci. 2006 15 2423 2434 2F11 Crystal Structure of the Human Sialidase Neu2 in Complex with isobutyl ether mimetic Inhibitor 2005-11-14 2006-11-21 Chavas, L.M.G.,Kato, R.,Mann, M.C.,Thomson, R.J.,Dyason, J.C.,von Itzstein, M.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 in Complex with isobutyl ether mimetic Inhibitor To be Published 0 0 0 0 2F12 Crystal Structure of the Human Sialidase Neu2 in Complex with 3- hydroxypropyl ether mimetic Inhibitor 2005-11-14 2006-11-21 Chavas, L.M.G.,Kato, R.,Mann, M.C.,Thomson, R.J.,Dyason, J.C.,von Itzstein, M.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 in Complex with 3- hydroxypropyl ether mimetic Inhibitor To be Published 0 0 0 0 2F13 Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor 2005-11-14 2006-11-21 Chavas, L.M.G.,Kato, R.,Mann, M.C.,Thomson, R.J.,Dyason, J.C.,von Itzstein, M.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor To be Published 0 0 0 0 2F24 Crystal Structure of the Human Sialidase Neu2 E111Q Mutant 2005-11-15 2006-11-21 Chavas, L.M.G.,Kato, R.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 E111Q Mutant To be Published 0 0 0 0 2F26 Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant 2005-11-15 2006-11-21 Chavas, L.M.G.,Kato, R.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant To be Published 0 0 0 0 2F28 Crystal Structure of the Human Sialidase Neu2 Q116E Mutant 2005-11-15 2006-11-21 Chavas, L.M.G.,Kato, R.,Fusi, P.,Tringali, C.,Venerando, B.,Tettamanti, G.,Monti, E.,Wakatsuki, S. Crystal Structure of the Human Sialidase Neu2 Q116E Mutant To be Published 0 0 0 0 2GC4 Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution. 2006-03-13 2006-11-28 Chen, Z.,Durley, R.,Davidson, V.L.,Mathews, F.S. Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution. To be Published 0 0 0 0 2D5V 17223534 Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter 2005-11-07 2006-12-05 Iyaguchi, D.,Yao, M.,Watanabe, N.,Nishihira, J.,Tanaka, I. DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure 2007 15 75 83 2DE7 17161368 The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase 2006-02-08 2006-12-05 Ashikawa, Y.,Fujimoto, Z.,Noguchi, H.,Habe, H.,Omori, T.,Yamane, H.,Nojiri, H. Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System Structure 2006 14 1779 1789 2D7T Crystal structure of human anti polyhydroxybutyrate antibody Fv 2005-11-29 2006-12-12 Watanabe, H.,Tsumoto, K.,Taguchi, S.,Yamashita, K.,Doi, Y.,Nishimiya, Y.,Kondo, H.,Umetsu, M.,Kumagai, I. A human antibody fragment with high affinity for the biodegradable polymer film To be Published 0 0 0 0 2HCV 17141803 Crystal structure of L-rhamnose isomerase from Pseudomonas stutzeri with metal ion 2006-06-19 2006-12-19 Yoshida, H.,Yamada, M.,Ohyama, Y.,Takada, G.,Izumori, K.,Kamitori, S. The Structures of l-Rhamnose Isomerase from Pseudomonas stutzeri in Complexes with l-Rhamnose and d-Allose Provide Insights into Broad Substrate Specificity J.Mol.Biol. 2007 365 1505 1516 2DRE 17170107 Crystal structure of Water-soluble chlorophyll protein from lepidium virginicum at 2.00 angstrom resolution 2006-06-08 2006-12-26 Horigome, D.,Satoh, H.,Itoh, N.,Mitsunaga, K.,Oonishi, I.,Nakagawa, A.,Uchida, A. Structural mechanism and photoprotective function of water-soluble chlorophyll-binding protein. J.Biol.Chem. 2007 282 6525 6531 2E2O 17229727 Crystal structure of Sulfolobus tokodaii hexokinase in complex with glucose 2006-11-15 2007-01-16 Nishimasu, H.,Fushinobu, S.,Shoun, H.,Wakagi, T. Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem. 2007 282 9923 9931 2E2P 17229727 Crystal structure of Sulfolobus tokodaii hexokinase in complex with ADP 2006-11-15 2007-01-16 Nishimasu, H.,Fushinobu, S.,Shoun, H.,Wakagi, T. Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem. 2007 282 9923 9931 2E2Q 17229727 Crystal structure of Sulfolobus tokodaii hexokinase in complex with xylose, Mg2+, and ADP 2006-11-15 2007-01-16 Nishimasu, H.,Fushinobu, S.,Shoun, H.,Wakagi, T. Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem. 2007 282 9923 9931 2DD7 19469881 A GFP-like protein from marine copepod, Chiridius poppei 2006-01-23 2007-01-23 Suto, K.,Masuda, H.,Takenaka, Y.,Tsuji, F.I.,Mizuno, H. Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei Genes Cells 2009 14 727 737 2DQC 17166830 Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme 2006-05-25 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQD 17166830 Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme 2006-05-25 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQE 17166830 Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme 2006-05-25 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQF 17166830 Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme 2006-05-25 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQG 17166830 Crystal structure of hyhel-10 FV mutant (Hy53f) complexed with hen egg lysozyme 2006-05-25 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQH 17166830 Crystal structure of hyhel-10 FV mutant (Hy58a) complexed with hen egg lysozyme 2006-05-26 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQI 17166830 Crystal structure of hyhel-10 FV mutant (Ly50a) complexed with hen egg lysozyme 2006-05-26 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DQJ 17166830 Crystal structure of hyhel-10 FV (wild-type) complexed with hen egg lysozyme at 1.8A resolution 2006-05-26 2007-01-23 Shiroishi, M.,Tsumoto, K.,Tanaka, Y.,Yokota, A.,Nakanishi, T.,Kondo, H.,Kumagai, I. Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem. 2007 282 6783 6791 2DDK 17340635 Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (orthorhombic form) 2006-01-30 2007-02-06 Arai, R.,Ito, K.,Ohnishi, T.,Ohba, H.,Akasaka, R.,Bessho, Y.,Hanawa-Suetsugu, K.,Yoshikawa, T.,Shirouzu, M.,Yokoyama, S. Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures Proteins 2007 67 732 742 2GC7 Substrate reduced, copper free complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans. 2006-03-13 2007-02-06 Chen, Z.,Durley, R.,Davidson, V.L.,Mathews, F.S. Structral comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution. To be Published 0 0 0 0 2E50 17360516 Crystal structure of SET/TAF-1beta/INHAT 2006-12-18 2007-02-20 Muto, S.,Senda, M.,Akai, Y.,Sato, L.,Suzuki, T.,Nagai, R.,Senda, T.,Horikoshi, M. Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity Proc.Natl.Acad.Sci.Usa 2007 104 4285 4290 2DTX 17300803 Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with D-mannose 2006-07-18 2007-03-27 Yasutake, Y.,Nishiya, Y.,Tamura, N.,Tamura, T. Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase J.Mol.Biol. 2007 367 1034 1046 2E40 17376440 Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium in complex with gluconolactone 2006-12-01 2007-03-27 Nijikken, Y.,Tsukada, T.,Igarashi, K.,Samejima, M.,Wakagi, T.,Shoun, H.,Fushinobu, S. Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium Febs Lett. 2007 581 1514 1520 2DI3 18988622 Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum 2006-03-28 2007-03-28 Gao, Y.G.,Suzuki, H.,Itou, H.,Zhou, Y.,Tanaka, Y.,Wachi, M.,Watanabe, N.,Tanaka, I.,Yao, M. Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization Nucleic Acids Res. 2008 36 7110 7123 2DI3 18988622 Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum 2006-03-28 2007-03-28 Gao, Y.G.,Suzuki, H.,Itou, H.,Zhou, Y.,Tanaka, Y.,Wachi, M.,Watanabe, N.,Tanaka, I.,Yao, M. Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization Nucleic Acids Res. 2008 36 7110 7123 2DRX 17373653 Structure Analysis of (POG)4-(LOG)2-(POG)4 2006-06-16 2007-04-24 Okuyama, K.,Narita, H.,Kawaguchi, T.,Noguchi, K.,Tanaka, Y.,Nishino, N. Unique side chain conformation of a leu residue in a triple-helical structure Biopolymers 2007 86 212 221 2EAD 17459873 Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with substrate 2007-01-31 2007-04-24 Nagae, M.,Tsuchiya, A.,Katayama, T.,Yamamoto, K.,Wakatsuki, S.,Kato, R. Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum J.Biol.Chem. 2007 282 18497 18509 2DKV 20544965 Crystal structure of class I chitinase from Oryza sativa L. japonica 2006-04-14 2007-05-01 Kezuka, Y.,Kojima, M.,Mizuno, R.,Suzuki, K.,Watanabe, T.,Nonaka, T. Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering. Proteins 2010 78 2295 2305 2IEY 17582168 Crystal Structure of mouse Rab27b bound to GDP in hexagonal space group 2006-09-19 2007-05-01 Chavas, L.M.G.,Torii, S.,Kamikubo, H.,Kawasaki, M.,Ihara, K.,Kato, R.,Kataoka, M.,Izumi, T.,Wakatsuki, S. Structure of the small GTPase Rab27b shows an unexpected swapped dimer Acta Crystallogr.,Sect.D 2007 63 769 779 2IF0 17582168 Crystal Structure of mouse Rab27b bound to GDP in monoclinic space group 2006-09-19 2007-05-01 Chavas, L.M.G.,Torii, S.,Kamikubo, H.,Kawasaki, M.,Ihara, K.,Kato, R.,Kataoka, M.,Izumi, T.,Wakatsuki, S. Structure of the small GTPase Rab27b shows an unexpected swapped dimer Acta Crystallogr.,Sect.D 2007 63 769 779 2P6E 17513302 Crystal structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoyl-CoA 2007-03-18 2007-06-12 Wu, J.,Tao, Y.,Zhang, M.,Howard, M.H.,Gutteridge, S.,Ding, J. Crystal structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoyl-CoA and inhibitors reveal the functional roles of the N-terminal region. J.Biol.Chem. 2007 282 22185 22194 2EGH 17554164 Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with a magnesium ion, NADPH and fosmidomycin 2007-03-01 2007-06-19 Yajima, S.,Hara, K.,Iino, D.,Sasaki, Y.,Kuzuyama, T.,Ohsawa, K.,Seto, H. Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase in a quaternary complex with a magnesium ion, NADPH and the antimalarial drug fosmidomycin Acta Crystallogr.,Sect.F 2007 63 466 470 2EI9 17537809 Crystal structure of R1Bm endonuclease domain 2007-03-12 2007-07-17 Maita, N.,Aoyagi, H.,Osanai, M.,Shirakawa, M.,Fujiwara, H. Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies. Nucleic Acids Res. 2007 35 3918 3927 2DWW Crystal structure of Bromodomain-containing protein 4 2006-08-21 2007-08-21 Padmanabhan, B.,Yokoyama, S. Crystal structure of Bromodomain-containing protein 4 To be Published 0 0 0 0 2Z36 17679139 Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105) 2007-06-02 2007-08-21 Yasutake, Y.,Imoto, N.,Fujii, Y.,Fujii, T.,Arisawa, A.,Tamura, T. Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105) Biochem.Biophys.Res.Commun. 2007 361 876 882 2DWZ Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome 2006-08-22 2007-08-28 Nakamura, Y.,Nakano, K.,Umehara, T.,Tanaka, A.,Padmanabhan, B.,Yokoyama, S. Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome To be Published 0 0 0 0 2DX7 17847084 Crystal structure of Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid 2006-08-24 2007-08-28 Ohtaki, A.,Nakano, Y.,Iizuka, R.,Arakawa, T.,Yamada, K.,Odaka, M.,Yohda, M. Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism. Proteins 2008 70 1167 1174 2Z68 Crystal Structure Of An Artificial Metalloprotein: Cr[N-salicylidene-4-amino-3-hydroxyhydrocinnamic acid]/Wild Type Heme oxygenase 2007-07-24 2007-08-28 Yokoi, N.,Ueno, T.,Unno, M.,Matsui, T.,Ikeda-Saito, M.,Watanabe, Y. Ligand design for improvement of thermal stabilityof metal complex/protein hybrids To be Published 0 0 0 0 2E1Q 17301077 Crystal Structure of Human Xanthine Oxidoreductase mutant, Glu803Val 2006-10-27 2007-09-18 Yamaguchi, Y.,Matsumura, T.,Ichida, K.,Okamoto, K.,Nishino, T. Human xanthine oxidase changes its substrate specificity to aldehyde oxidase type upon mutation of amino acid residues in the active site: roles of active site residues in binding and activation of purine substrate J.Biochem.(Tokyo) 2007 141 513 524 2IE1 Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography 2006-09-16 2007-10-09 Ohishi, H.,Odoko, M.,Tsukamoto, K.,Hiyama, Y.,Maezaki, N.,Grzeskowiak, K.,Ishida, T.,Tanaka, T.,Okabe, N.,Fukuyama, K. Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography To be Published 0 0 0 0 2DZO Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3 2006-09-29 2007-10-16 Nakamura, Y.,Padmanabhan, B.,Yokoyama, S. Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3 To be Published 0 0 0 0 2V0V 17870090 Crystal Structure of Rev-Erb beta 2007-05-19 2007-10-23 Woo, E.-J.,Jeong, D.G.,Lim, M.-Y.,Jun Kim, S.,Kim, K.-J.,Yoon, S.-M.,Park, B.-C.,Eon Ryu, S. Structural Insight Into the Constitutive Repression Function of the Nuclear Receptor Rev-Erbbeta J.Mol.Biol. 2007 373 735 0 2Z4Q 17947238 Crystal structure of a murine antibody FAB 528 2007-06-22 2007-10-30 Makabe, K.,Nakanishi, T.,Tsumoto, K.,Tanaka, Y.,Kondo, H.,Umetsu, M.,Sone, Y.,Asano, R.,Kumagai, I. Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528 J.Biol.Chem. 2008 283 1156 1166 2ZB6 18003910 Crystal structure of the measles virus hemagglutinin (oligo-sugar type) 2007-10-16 2007-11-06 Hashiguchi, T.,Kajikawa, M.,Maita, N.,Takeda, M.,Kuroki, K.,Sasaki, K.,Kohda, D.,Yanagi, Y.,Maenaka, K. Crystal structure of measles virus hemagglutinin provides insight into effective vaccines Proc.Natl.Acad.Sci.Usa 2007 104 19535 19540 2OHD 18607082 Crystal structure of hypothetical molybdenum cofactor biosynthesis protein C from Sulfolobus tokodaii 2007-01-10 2007-11-27 Yoshida, H.,Yamada, M.,Kuramitsu, S.,Kamitori, S. Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472) Acta Crystallogr.,Sect.F 2008 64 589 592 2E3O 18184806 Crystal structure of CERT START domain in complex with C16-ceramide (P212121) 2006-11-28 2007-12-18 Kudo, N.,Kumagai, K.,Tomishige, N.,Yamaji, T.,Wakatsuki, S.,Nishijima, M.,Hanada, K.,Kato, R. Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa 2008 105 488 493 2E3Q 18184806 Crystal structure of CERT START domain in complex with C18-ceramide (P212121) 2006-11-28 2007-12-18 Kudo, N.,Kumagai, K.,Tomishige, N.,Yamaji, T.,Wakatsuki, S.,Nishijima, M.,Hanada, K.,Kato, R. Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa 2008 105 488 493 2OU4 17936787 Crystal structure of D-tagatose 3-epimerase from Pseudomonas cichorii 2007-02-09 2007-12-25 Yoshida, H.,Yamada, M.,Nishitani, T.,Takada, G.,Izumori, K.,Kamitori, S. Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose J.Mol.Biol. 2007 374 443 453 2QUM 17936787 Crystal structure of D-tagatose 3-epimerase from Pseudomonas cichorii with D-tagatose 2007-08-06 2007-12-25 Yoshida, H.,Yamada, M.,Nishitani, T.,Takada, G.,Izumori, K.,Kamitori, S. Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose J.Mol.Biol. 2007 374 443 453 2ECE X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059 2007-02-13 2008-01-01 Yamada, M.,Yoshida, H.,Kuramitsu, S.,Kamitori, S. X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059 To be Published 0 0 0 0 2E7D 18667422 Crystal structure of a NEAT domain from Staphylococcus aureus 2007-01-09 2008-01-22 Watanabe, M.,Tanaka, Y.,Suenaga, A.,Kuroda, M.,Yao, M.,Watanabe, N.,Arisaka, F.,Ohta, T.,Tanaka, I.,Tsumoto, K. Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus J.Biol.Chem. 2008 283 28649 28659 3BK6 18182167 Crystal structure of a core domain of stomatin from Pyrococcus horikoshii 2007-12-05 2008-02-19 Yokoyama, H.,Fujii, S.,Matsui, I. Crystal structure of a core domain of stomatin from Pyrococcus horikoshii Illustrates a novel trimeric and coiled-coil fold J.Mol.Biol. 2008 376 868 878 2EGY Crystal structure of LysN, alpha-aminoadipate aminotransferase (substrate free form), from Thermus thermophilus HB27 2007-03-02 2008-03-04 Tomita, T.,Miyazaki, T.,Miyagawa, T.,Fushinobu, S.,Kuzuyama, T.,Nishiyama, M. Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27 To be Published 0 0 0 0 2Z9B 18337254 The crystal structure of AzoR (azoreductase) from Escherichia coli: Reduced AzoR in tetragonal crystals 2007-09-18 2008-03-11 Ito, K.,Nakanishi, M.,Lee, W.C.,Zhi, Y.,Sasaki, H.,Zenno, S.,Saigo, K.,Kitade, Y.,Tanokura, M. Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis J.Biol.Chem. 2008 283 13889 13896 2Z9C 18337254 The crystal structure of AzoR (azoreductase) from Escherichia coli: AzoR in complex with dicoumarol 2007-09-18 2008-03-11 Ito, K.,Nakanishi, M.,Lee, W.C.,Zhi, Y.,Sasaki, H.,Zenno, S.,Saigo, K.,Kitade, Y.,Tanokura, M. Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis J.Biol.Chem. 2008 283 13889 13896 2EJ0 Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase with Pyridoxamine 5'-phosphate 2007-03-14 2008-03-18 Goto, M. Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase with Pyridoxamine 5'-phosphate To be published 0 0 0 0 2ELG 17467661 The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius 2007-03-27 2008-04-01 Ohishi, H.,Tozuka, Y.,Da-Yang, Z.,Ishida, T.,Nakatani, K. The rare crystallographic structure of d(CGCGCG)(2): The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C Biochem.Biophys.Res.Commun. 2007 358 24 28 2Z5I 18483193 Crystal structure of the head-to-tail junction of tropomyosin 2007-07-12 2008-04-22 Murakami, K.,Stewart, M.,Nozawa, K.,Tomii, K.,Kudou, N.,Igarashi, N.,Shirakihara, Y.,Wakatsuki, S.,Yasunaga, T.,Wakabayashi, T. Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T Proc.Natl.Acad.Sci.USA 2008 105 7200 7205 2Z5W 17879302 tBclA, a recombinant spore surface protein from Bacillus anthracis 2007-07-20 2008-04-22 Liu, C.Q.,Nuttall, S.D.,Tran, H.,Wilkins, M.,Streltsov, V.A.,Alderton, M.R. Construction, crystal structure and application of a recombinant protein that lacks the collagen-like region of BclA from Bacillus anthracis spores. BIOTECHNOL.BIOENG. 2008 99 774 782 3BKY 18346788 Crystal Structure of Chimeric Antibody C2H7 Fab in complex with a CD20 Peptide 2007-12-07 2008-04-29 Du, J.,Wang, H.,Zhong, C.,Peng, B.,Zhang, M.,Li, B.,Hou, S.,Guo, Y.,Ding, J. Crystal structure of chimeric antibody C2H7 Fab in complex with a CD20 peptide Mol.Immunol. 2008 45 2861 2868 3BPP 18421152 1510-N membrane protease K138A mutant specific for a stomatin homolog from Pyrococcus horikoshii 2007-12-19 2008-04-29 Yokoyama, H.,Hamamatsu, S.,Fujii, S.,Matsui, I. Novel dimer structure of a membrane-bound protease with a catalytic Ser-Lys dyad and its linkage to stomatin J.SYNCHROTRON RADIAT. 2008 15 254 257 2Z93 18463096 Crystal structure of Fab fragment of anti-ciguatoxin antibody 10C9 in complex with CTX3C-ABCD 2007-09-14 2008-05-06 Ui, M.,Tanaka, Y.,Tsumuraya, T.,Fujii, I.,Inoue, M.,Hirama, M.,Tsumoto, K. How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9 J.Biol.Chem. 2008 283 19440 19447 2ZA4 18441234 Crystal Structural Analysis of Barnase-barstar Complex 2007-10-01 2008-05-20 Urakubo, Y.,Ikura, T.,Ito, N. Crystal structural analysis of protein-protein interactions drastically destabilized by a single mutation Protein Sci. 2008 17 1055 1065 2Z1Y Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-leucine), from Thermus thermophilus HB27 2007-05-16 2008-06-03 Tomita, T.,Miyazaki, T.,Miyagawa, T.,Fushinobu, S.,Kuzuyama, T.,Nishiyama, M. Mechanism of broad substrate specificity of alpha-aminoadipate aminotransferase from Thermus thermophilus To be Published 0 0 0 0 3D3I 18586271 Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63 2008-05-12 2008-06-03 Kurakata, Y.,Uechi, A.,Yoshida, H.,Kamitori, S.,Sakano, Y.,Nishikawa, A.,Tonozuka, T. Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol. 2008 381 116 128 2ZL9 18539034 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure 2008-04-04 2008-06-24 Shimizu, M.,Miyamoto, Y.,Takaku, H.,Matsuo, M.,Nakabayashi, M.,Masuno, H.,Udagawa, N.,DeLuca, H.F.,Ikura, T.,Ito, N. 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation, and crystal structure Bioorg.Med.Chem. 2008 16 6949 6964 2ZLA 18539034 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure 2008-04-04 2008-06-24 Shimizu, M.,Miyamoto, Y.,Takaku, H.,Matsuo, M.,Nakabayashi, M.,Masuno, H.,Udagawa, N.,DeLuca, H.F.,Ikura, T.,Ito, N. 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation, and crystal structure Bioorg.Med.Chem. 2008 16 6949 6964 2ZLC 18539034 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure 2008-04-04 2008-06-24 Shimizu, M.,Miyamoto, Y.,Takaku, H.,Matsuo, M.,Nakabayashi, M.,Masuno, H.,Udagawa, N.,DeLuca, H.F.,Ikura, T.,Ito, N. 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation, and crystal structure Bioorg.Med.Chem. 2008 16 6949 6964 2ZOZ 20691702 Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR 2008-06-20 2008-07-08 Itou, H.,Watanabe, N.,Yao, M.,Shirakihara, Y.,Tanaka, I. Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator J.Mol.Biol. 2010 403 174 184 2ZMH 18710208 Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism 2008-04-18 2008-09-02 Nakabayashi, M.,Yamada, S.,Yoshimoto, N.,Tanaka, T.,Igarashi, M.,Ikura, T.,Ito, N.,Makishima, M.,Tokiwa, H.,DeLuca, H.F.,Shimizu, M. Crystal structures of rat vitamin d receptor bound to adamantyl vitamin d analogs: structural basis for vitamin d receptor antagonism and partial agonism J.Med.Chem. 2008 51 5320 5329 2ZQO 19153466 Crystal structure of the earthworm R-type lectin C-half in complex with GalNAc 2008-08-13 2008-09-02 Suzuki, R.,Kuno, A.,Hasegawa, T.,Hirabayashi, J.,Kasai, K.,Momma, M.,Fujimoto, Z. Sugar-complex structures of the C-half domain of the galactose-binding lectin EW29 from the earthworm Lumbricus terrestris Acta Crystallogr.,Sect.D 2009 65 49 57 2ZN9 18940611 Crystal structure of Ca2+-bound form of des3-20ALG-2 2008-04-22 2008-09-09 Suzuki, H.,Kawasaki, M.,Inuzuka, T.,Okumura, M.,Kakiuchi, T.,Shibata, H.,Wakatsuki, S.,Maki, M. Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism Structure 2008 16 1562 1573 2QZQ Crystal structure of C-terminal of Aida 2007-08-17 2008-09-23 Zheng, L.S. Crystal structure of C-terminal of Aida To be Published 0 0 0 0 2ZKN 18796645 X-ray structure of mutant galectin-1/lactose complex 2008-03-26 2008-09-30 Nishi, N.,Abe, A.,Iwaki, J.,Yoshida, H.,Itoh, A.,Shoji, H.,Kamitori, S.,Hirabayashi, J.,Nakamura, T. Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1 Glycobiology 2008 18 1065 1073 3E9F 18984594 Crystal structure short-form (residue1-113) of Eaf3 chromo domain 2008-08-22 2008-11-04 Sun, B.,Hong, J.,Zhang, P.,Dong, X.,Shen, X.,Lin, D.,Ding, J. Molecular Basis of the Interaction of Saccharomyces cerevisiae Eaf3 Chromo Domain with Methylated H3K36 J.Biol.Chem. 2008 283 36504 36512 2ZDS 18782066 Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2) 2007-11-27 2008-12-02 Begum, P.,Sakai, N.,Hayashi, T.,Gao, Y.G.,Tamura, T.,Watanabe, N.,Yao, M.,Tanaka, I. Crystal structure of SCO6571 from Streptomyces coelicolor A3(2). Protein Pept.Lett. 2008 15 709 712 3E5L 19074393 Crystal structure of CYP105P1 H72A mutant 2008-08-14 2008-12-30 Xu, L.H.,Fushinobu, S.,Ikeda, H.,Wakagi, T.,Shoun, H. Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state J.Bacteriol. 2009 191 1211 1219 2ZTX 19144641 Complex structure of CVB3 3C protease with EPDTC 2008-10-10 2009-01-13 Lee, C.C.,Kuo, C.J.,Ko, T.P.,Hsu, M.F.,Tsui, Y.C.,Chang, S.C.,Yang, S.,Chen, S.J.,Chen, H.C.,Hsu, M.C.,Shih, S.R.,Liang, P.H.,Wang, A.H.-J. Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem. 2009 284 7646 7655 2ZU2 19144641 complex structure of CoV 229E 3CL protease with EPDTC 2008-10-12 2009-01-13 Lee, C.C.,Kuo, C.J.,Ko, T.P.,Hsu, M.F.,Tsui, Y.C.,Chang, S.C.,Yang, S.,Chen, S.J.,Chen, H.C.,Hsu, M.C.,Shih, S.R.,Liang, P.H.,Wang, A.H.-J. Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem. 2009 284 7646 7655 3CBF 18831049 Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27 2008-02-21 2009-01-13 Tomita, T.,Miyagawa, T.,Miyazaki, T.,Fushinobu, S.,Kuzuyama, T.,Nishiyama, M. Mechanism for multiple-substrates recognition of alpha-aminoadipate aminotransferase from Thermus thermophilus Proteins 2008 0 0 0 2ZHI Crystal Structure Analysis of the Sodium-Bound Annexin A4 at 1.58 A resolution 2008-02-06 2009-02-10 Butsushita, K.,Inoue, K.,Ida, K.,Fukuoka, S.-I.,Arii, Y. Structural Analysis for the Sodium-Dependent Dissociation of Annexin A4: Crystal Structures of Soduim-Bound Annexin A4 at High Resolutions To be Published 0 0 0 0 2ZHJ Crystal Structure Analysis of the Sodium-Bound Annexin A4 at 1.34 A resolution 2008-02-06 2009-02-10 Butsushita, K.,Inoue, K.,Ida, K.,Fukuoka, S.-I.,Arii, Y. Structural Analysis for the Soduim-Dependent Dissociation of Annexin A4: Crystal Structures of Soduim-Bound Annexin A4 at High Resolutions To be Published 0 0 0 0 2ZXM 19193059 A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket 2009-01-04 2009-02-17 Inaba, Y.,Yoshimoto, N.,Sakamaki, Y.,Nakabayashi, M.,Ikura, T.,Tamamura, H.,Ito, N.,Shimizu, M.,Yamamoto, K. A New Class of Vitamin D Analogues that Induce Structural Rearrangement of the Ligand-Binding Pocket of the Receptor J.Med.Chem. 2009 52 1438 1449 2ZXN 19193059 A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket 2009-01-04 2009-02-17 Inaba, Y.,Yoshimoto, N.,Sakamaki, Y.,Nakabayashi, M.,Ikura, T.,Tamamura, H.,Ito, N.,Shimizu, M.,Yamamoto, K. A New Class of Vitamin D Analogues that Induce Structural Rearrangement of the Ligand-Binding Pocket of the Receptor J.Med.Chem. 2009 52 1438 1449 2ZW1 19269963 Crystal structure of a Streptococcal protein G B1 mutant 2008-11-26 2009-03-03 Watanabe, H.,Matsumaru, H.,Ooishi, A.,Feng, Y.,Odahara, T.,Suto, K.,Honda, S. Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions. J.Biol.Chem. 2009 284 12373 12383 3DOF 19368893 Complex of ARL2 and BART, Crystal Form 2 2008-07-04 2009-03-03 Zhang, T.,Li, S.,Zhang, Y.,Zhong, C.,Lai, Z.,Ding, J. Crystal structure of the ARL2-GTP-BART complex reveals a novel recognition and binding mode of small GTPase with effector Structure 2009 17 602 610 3E3B 19193990 Crystal structure of catalytic subunit of human protein kinase CK2alpha prime with a potent indazole-derivative inhibitor 2008-08-07 2009-03-03 Nakaniwa, T.,Kinoshita, T.,Sekiguchi, Y.,Tada, T.,Nakanishi, I.,Kitaura, K.,Suzuki, Y.,Ohno, H.,Hirasawa, A.,Tsujimoto, G. Structure of human protein kinase CK2alpha2 with a potent indazole-derivative inhibitor Acta Crystallogr.,Sect.F 2009 65 75 79 2ZJW 19414254 Crystal structure of human CK2 alpha complexed with Ellagic acid 2008-03-11 2009-03-17 Sekiguchi, Y.,Nakaniwa, T.,Kinoshita, T.,Nakanishi, I.,Kitaura, K.,Hirasawa, A.,Tsujimoto, G.,Tada, T. Structural insight into human CK2alpha in complex with the potent inhibitor ellagic acid Bioorg.Med.Chem.Lett. 2009 19 2920 2923 2ZYM 19490104 Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin 2009-01-27 2009-03-31 Matsumoto, N.,Yamada, M.,Kurakata, Y.,Yoshida, H.,Kamitori, S.,Nishikawa, A.,Tonozuka, T. Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J. 2009 276 3008 3019 2ZOQ 18983981 Structural dissection of human mitogen-activated kinase ERK1 2008-06-01 2009-04-07 Kinoshita, T.,Yoshida, I.,Nakae, S.,Okita, K.,Gouda, M.,Matsubara, M.,Yokota, K.,Ishiguro, H.,Tada, T. Crystal structure of human mono-phosphorylated ERK1 at Tyr204 Biochem.Biophys.Res.Commun. 2008 377 1123 1127 2ZPA 19322199 Crystal Structure of tRNA(Met) Cytidine Acetyltransferase 2008-07-08 2009-04-07 Chimnaronk, S.,Suzuki, T.,Manita, T.,Ikeuchi, Y.,Yao, M.,Suzuki, T.,Tanaka, I. RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon Embo J. 2009 28 1362 1373 3F6G 19351325 Crystal structure of the regulatory domain of LiCMS in complexed with isoleucine - type II 2008-11-06 2009-04-21 Zhang, P.,Ma, J.,Zhang, Z.,Zha, M.,Xu, H.,Zhao, G.,Ding, J. Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans Biochem.J. 2009 421 133 143 2ZOC Crystal structure of recombinant human annexin IV 2008-05-08 2009-04-28 Konno, M.,Kaneko-Kanzaki, Y.,Fushinobu-Okushi, N.,Mochizuki, K.,Uchikawa, E.,Satoh, A.,Aikawa, K. The comparison of the loop structure of membrane binding sites between human and bovine annexin IV To be Published 0 0 0 0 3GOI 19362831 Human glucokinase in complex with a synthetic activator 2009-03-19 2009-04-28 Mitsuya, M.,Kamata, K.,Bamba, M.,Watanabe, H.,Sasaki, Y.,Sasaki, K.,Ohyama, S.,Hosaka, H.,Nagata, Y.,Eiki, J.,Nishimura, T. Discovery of novel 3,6-disubstituted 2-pyridinecarboxamide derivatives as GK activators Bioorg.Med.Chem.Lett. 2009 19 2718 2721 3DON 19215302 Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis 2008-07-05 2009-05-05 Han, C.,Hu, T.,Wu, D.,Qu, S.,Zhou, J.,Ding, J.,Shen, X.,Qu, D.,Jiang, H. X-ray crystallographic and enzymatic analyses of shikimate dehydrogenase from Staphylococcus epidermidis Febs J. 2009 276 1125 1139 2ZXQ 19502354 Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) 2009-01-05 2009-06-16 Suzuki, R.,Katayama, T.,Kitaoka, M.,Kumagai, H.,Wakagi, T.,Shoun, H.,Ashida, H.,Yamamoto, K.,Fushinobu, S. Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum. J.Biochem. 2009 0 0 0 3DKU Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1 2008-06-26 2009-06-30 Hong, M.K.,Kim, J.K.,Jung, J.H.,Jung, J.W.,Choi, J.Y.,Kang, L.W. Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1. To be Published 0 0 0 0 3A22 19608743 Crystal Structure of beta-L-Arabinopyranosidase complexed with L-arabinose 2009-04-27 2009-07-14 Ichinose, H.,Fujimoto, Z.,Honda, M.,Harazono, K.,Nishimoto, Y.,Uzura, A.,Kaneko, S. A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27. J.Biol.Chem. 2009 284 25097 25106 3A23 19608743 Crystal Structure of beta-L-Arabinopyranosidase complexed with D-galactose 2009-04-27 2009-07-14 Ichinose, H.,Fujimoto, Z.,Honda, M.,Harazono, K.,Nishimoto, Y.,Uzura, A.,Kaneko, S. A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27. J.Biol.Chem. 2009 284 25097 25106 3HGN 19603802 Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by neutron crystallography 2009-05-14 2009-07-28 Tamada, T.,Kinoshita, T.,Kurihara, K.,Adachi, M.,Ohhara, T.,Imai, K.,Kuroki, R.,Tada, T. Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond J.Am.Chem.Soc. 2009 131 11033 11040 3HGN 19603802 Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by neutron crystallography 2009-05-14 2009-07-28 Tamada, T.,Kinoshita, T.,Kurihara, K.,Adachi, M.,Ohhara, T.,Imai, K.,Kuroki, R.,Tada, T. Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond J.Am.Chem.Soc. 2009 131 11033 11040 2ZYG 19686854 Apo-form of dimeric 6-phosphogluconate dehydrogenase 2009-01-21 2009-09-01 Chen, Y.-Y.,Ko, T.-P.,Chen, W.-H.,Lo, L.-P.,Lin, C.-H.,Wang, A.H.-J. Conformational changes associated with cofactor/substrate binding of 6-phosphogluconate dehydrogenase from Escherichia coli and Klebsiella pneumoniae: Implications for enzyme mechanism J.Struct.Biol. 2010 169 25 35 2ZYJ 19632206 Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-glutamate), from Thermus thermophilus HB27 2009-01-26 2009-09-01 Ouchi, T.,Tomita, T.,Miyagawa, T.,Kuzuyama, T.,Nishiyama, M. Dual roles of a conserved pair, Arg23 and Ser20, in recognition of multiple substrates in alpha-aminoadipate aminotransferase from Thermus thermophilus. Biochem.Biophys.Res.Commun. 2009 388 21 27 2ZQZ 19787773 R-state structure of allosteric L-lactate dehydrogenase from Lactobacillus casei 2008-08-22 2009-09-08 Arai, K.,Ishimitsu, T.,Fushinobu, S.,Uchikoba, H.,Matsuzawa, H.,Taguchi, H. Active and inactive state structures of unliganded Lactobacillus casei allosteric L-lactate dehydrogenase. Proteins 2010 78 681 694 3A6O 15138257 Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex 2009-09-07 2009-09-22 Ohtaki, A.,Mizuno, M.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM. 2004 279 31033 31040 2ZZD 19785438 Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme 2009-02-09 2009-10-13 Arakawa, T.,Kawano, Y.,Katayama, Y.,Nakayama, H.,Dohmae, N.,Yohda, M.,Odaka, M. Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification J.Am.Chem.Soc. 2009 131 14838 14843 3A4K 19966419 Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution 2009-07-09 2009-10-20 Watanabe, N.,Takasaki, Y.,Sato, C.,Ando, S.,Tanaka, I. Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations Acta Crystallogr.,Sect.D 2009 65 1326 1333 3A32 19761773 Crystal structure of putative threonyl-tRNA synthetase ThrRS-1 from Aeropyrum pernix 2009-06-07 2009-10-27 Shimizu, S.,Juan, E.C.M.,Sato, Y.,Miyashita, Y.,Hoque, M.M.,Suzuki, K.,Sagara, T.,Tsunoda, M.,Sekiguchi, T.,Dock-Bregeon, A.-C.,Moras, D.,Takenaka, A. 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Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme J.Biol.Chem. 2010 285 7686 7696 3A6B 20038580 Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme 2009-08-28 2009-12-22 Yokota, A.,Tsumoto, K.,Shiroishi, M.,Nakanishi, T.,Kondo, H.,Kumagai, I. Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme J.Biol.Chem. 2010 285 7686 7696 3A6C 20038580 Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme 2009-08-28 2009-12-22 Yokota, A.,Tsumoto, K.,Shiroishi, M.,Nakanishi, T.,Kondo, H.,Kumagai, I. 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Acta Crystallogr.,Sect.D 2010 66 88 96 3IH8 20050917 Crystal Structure Analysis of Mglu in its native form 2009-07-29 2010-01-19 Yoshimune, K.,Shirakihara, Y.,Wakayama, M.,Yumoto, I. Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product l-glutamate and its activator Tris Febs J. 2010 277 738 748 3IHB 20050917 Crystal Structure Analysis of Mglu in its tris and glutamate form 2009-07-29 2010-01-19 Yoshimune, K.,Shirakihara, Y.,Wakayama, M.,Yumoto, I. Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product l-glutamate and its activator Tris Febs J. 2010 277 738 748 3ITL 20088877 Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant D327N in complex with L-rhamnulose 2009-08-28 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3ITO 20088877 Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant D327N in complex with D-psicose 2009-08-28 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3ITX 20088877 Mn2+ bound form of Pseudomonas stutzeri L-rhamnose isomerase 2009-08-28 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3ITY 20088877 Metal-free form of Pseudomonas stutzeri L-rhamnose isomerase 2009-08-28 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3IUD 20088877 Cu2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase 2009-08-31 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3IUH 20088877 Co2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase 2009-08-31 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3IUI 20088877 Zn2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase 2009-08-31 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3A6E 20043918 W174F mutant creatininase, type I 2009-08-31 2010-02-09 Yamashita, K.,Nakajima, Y.,Matsushita, H.,Nishiya, Y.,Yamazawa, R.,Wu, Y.F.,Matsubara, F.,Oyama, H.,Ito, K.,Yoshimoto, T. Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase J.Mol.Biol. 2010 396 1081 1096 3A6H 20043918 W154A mutant creatininase 2009-08-31 2010-02-09 Yamashita, K.,Nakajima, Y.,Matsushita, H.,Nishiya, Y.,Yamazawa, R.,Wu, Y.F.,Matsubara, F.,Oyama, H.,Ito, K.,Yoshimoto, T. Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase J.Mol.Biol. 2010 396 1081 1096 3A6J 20043918 E122Q mutant creatininase complexed with creatine 2009-09-02 2010-02-09 Yamashita, K.,Nakajima, Y.,Matsushita, H.,Nishiya, Y.,Yamazawa, R.,Wu, Y.F.,Matsubara, F.,Oyama, H.,Ito, K.,Yoshimoto, T. Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase J.Mol.Biol. 2010 396 1081 1096 3KT0 20123733 Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase 2009-11-24 2010-02-16 Zhou, M.,Dong, X.,Shen, N.,Zhong, C.,Ding, J. Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design Nucleic Acids Res. 2010 38 3399 3413 3AFR 20211257 Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex 2010-03-10 2010-03-31 Inaba, Y.,Nakabayashi, M.,Itoh, T.,Yoshimoto, N.,Ikura, T.,Ito, N.,Shimizu, M.,Yamamoto, K. 22S-Butyl-1alpha,24R-dihydroxyvitamin D(3): Recovery of vitamin D receptor agonistic activity J.Steroid Biochem.Mol.Biol. 2010 121 146 150 3GJJ crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one 2009-03-09 2010-03-31 Takenaka, A.,Juan, E.C.M.,Shimizu, S.,Haraguchi, T.,Xiao, M.,Kurose, T.,Ohkubo, A.,Sekine, M.,Shibata, T.,Millington, M. Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one To be Published 0 0 0 0 3A8O 20221653 Crystal structure of Nitrile Hydratase complexed with Trimethylacetamide 2009-10-07 2010-04-14 Yamanaka, Y.,Hashimoto, K.,Ohtaki, A.,Noguchi, K.,Yohda, M.,Odaka, M. Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem. 2010 15 655 665 3AH1 18178224 HA1 subcomponent of botulinum type C progenitor toxin complexed with N-acetylneuramic acid 2010-04-13 2010-04-28 Nakamura, T.,Tonozuka, T.,Ide, A.,Yuzawa, T.,Oguma, K.,Nishikawa, A. Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin J.Mol.Biol. 2008 376 854 867 3AH2 18178224 HA1 subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine 2010-04-13 2010-04-28 Nakamura, T.,Tonozuka, T.,Ide, A.,Yuzawa, T.,Oguma, K.,Nishikawa, A. Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin J.Mol.Biol. 2008 376 854 867 3AH4 18178224 HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose 2010-04-13 2010-04-28 Nakamura, T.,Tonozuka, T.,Ide, A.,Yuzawa, T.,Oguma, K.,Nishikawa, A. Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin J.Mol.Biol. 2008 376 854 867 3I9U 20380462 Crystal structure of the rat heme oxygenase (HO-1) in complex with heme binding dithioerythritol (DTE) 2009-07-13 2010-05-19 Matsui, T.,Iwasaki, M.,Sugiyama, R.,Unno, M.,Ikeda-Saito, M. 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Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate Acta Crystallogr.,Sect.D 2010 66 843 849 3AHS 20623666 Crystal Structure of Ustilago sphaerogena Ribonuclease U2B 2010-04-29 2010-07-07 Noguchi, S. Structural changes induced by the deamidation and isomerization of asparagine revealed by the crystal structure of Ustilago sphaerogena ribonuclease U2B Biopolymers 2010 93 1003 1010 3AHW 20858208 Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 2'-monophosphate 2010-05-04 2010-07-07 Noguchi, S. Conformational variation revealed by the crystal structure of RNase U2A complexed with Ca ion and 2'-adenylic acid at 1.03 angstrom resolution. Protein Pept.Lett. 2010 17 1559 1561 3A47 Crystal structure of isomaltase from Saccharomyces cerevisiae 2009-07-01 2010-07-14 Yamamoto, K.,Miyake, H.,Kusunoki, M.,Osaki, S. Crystal structure of isomaltase from Saccharomyces cerevisiae To be Published 0 0 0 0 3AC0 20662765 Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose 2009-12-25 2010-08-11 Yoshida, E.,Hidaka, M.,Fushinobu, S.,Koyanagi, T.,Minami, H.,Tamaki, H.,Kitaoka, M.,Katayama, T.,Kumagai, H. Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus. Biochem.J. 2010 431 39 49 3N4N 20554855 Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one 2010-05-22 2010-08-11 Juan, E.C.M.,Shimizu, S.,Ma, X.,Kurose, T.,Haraguchi, T.,Zhang, F.,Tsunoda, M.,Ohkubo, A.,Sekine, M.,Shibata, T.,Millington, C.L.,Williams, D.M.,Takenaka, A. 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Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism J.Biol.Chem. 2010 285 34279 34287 3AKF 20739278 Crystal structure of exo-1,5-alpha-L-arabinofuranosidase 2010-07-14 2010-08-25 Fujimoto, Z.,Ichinose, H.,Maehara, T.,Honda, M.,Kitaoka, M.,Kaneko, S. Crystal Structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43. J.Biol.Chem. 2010 285 34134 34143 3OBY 20682285 Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural plasticity 2010-08-09 2010-09-01 Lee, H.H.,Jang, J.Y.,Yoon, H.-J.,Kim, S.J.,Suh, S.W. Crystal structures of two archaeal Pelotas reveal inter-domain structural plasticity Biochem.Biophys.Res.Commun. 2010 399 600 606 3OBY 20682285 Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural plasticity 2010-08-09 2010-09-01 Lee, H.H.,Jang, J.Y.,Yoon, H.-J.,Kim, S.J.,Suh, S.W. Crystal structures of two archaeal Pelotas reveal inter-domain structural plasticity Biochem.Biophys.Res.Commun. 2010 399 600 606 3OD5 20890311 Crystal structure of active caspase-6 bound with Ac-VEID-CHO 2010-08-11 2010-10-27 Wang, X.-J.,Cao, Q.,Liu, X.,Wang, K.-T.,Mi, W.,Zhang, Y.,Li, L.-F.,Leblanc, A.C.,Su, X.-D. Crystal structures of human caspase 6 reveal a new mechanism for intramolecular cleavage self-activation Embo Rep. 2010 11 841 847 3M0Y 20977999 Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329A in complex with L-rhamnose 2010-03-03 2010-11-10 Yoshida, H.,Takeda, K.,Izumori, K.,Kamitori, S. Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel. 2010 23 919 927 3ABN 23616212 Crystal structure of (Pro-Pro-Gly)4-Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.02 A 2009-12-16 2010-12-01 Okuyama, K.,Kawaguchi, T.,Shimura, M.,Noguchi, K.,Mizuno, K.,Bachinger, H.P. Crystal structure of the collagen model peptide (Pro-Pro-Gly)4 -Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.0 angstrom resolution. Biopolymers 2013 99 436 447 3L7X The Crystal Structure of SMU.412c from Streptococcus mutans UA159 2009-12-29 2010-12-08 Su, X.-D.,Ye, Z.Y.,Liu, X. The Crystal Structure of SMU.412c from Streptococcus mutans UA159 TO BE PUBLISHED 0 0 0 0 3ABF Crystal Structure of a 4-Oxalocrotonate Tautomerase Homologue (TTHB242) 2009-12-10 2010-12-15 Kida, H.,Kita, A.,Miki, K. 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The Crystal Structure of smu.793 from Streptococcus mutans UA159 bound to acetyl CoA TO BE PUBLISHED 0 0 0 0 3ALS 21247895 Crystal structure of CEL-IV 2010-08-07 2011-01-19 Hatakeyama, T.,Kamiya, T.,Kusunoki, M.,Nakamura-Tsuruta, S.,Hirabayashi, J.,Goda, S.,Unno, H. Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif J.Biol.Chem. 2011 286 10305 10315 3LDG Crystal structure of SMU.472, a putative methyltransferase complexed with SAH 2010-01-13 2011-01-19 Wang, K.-T.,Su, X.-D. Crystal structure of SMU.472 complexed with SAH To be Published 0 0 0 0 3AP6 21288902 Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose 3'-sulfate 2010-10-12 2011-01-26 Ideo, H.,Matsuzaka, T.,Nonaka, T.,Seko, A.,Yamashita, K. 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Salt-induced conformational change of salt-tolerant glutaminase from Micrococcus luteus K-3 To be Published 0 0 0 0 3AGE Crystal structure of Mglu in its L-glutamate binding form in the presence of 4.3M NaCl 2010-03-30 2011-04-13 Yoshimune, K.,Shirakihara, Y.,Yumoto, I. Salt-induced conformational change of salt-tolerant glutaminase from Micrococcus luteus K-3 To be Published 0 0 0 0 3AGF Crystal structure of Bacillus glutaminase in the presence of 4.3M NaCl 2010-03-30 2011-04-13 Yoshimune, K.,Shirakihara, Y.,Yumoto, I. Salt-induced conformational change of salt-tolerant glutaminase from Micrococcus luteus K-3 To be Published 0 0 0 0 3AQ9 21298303 Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Q50E mutant, Fe(III) form 2010-10-25 2011-04-20 Igarashi, J.,Kobayashi, K.,Matsuoka, A. 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