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Complex Structure of the DNA-binding Domain of AdpA, the Global Transcription Factor in Streptomyces griseus, and a Target Duplex DNA Reveals the Structural Basis of Its Tolerant DNA Sequence Specificity J.Biol.Chem. 2013 288 31019 31029 3WD1 24043811 Serratia marcescens Chitinase B complexed with syn-triazole inhibitor 2013-06-06 2013-09-18 Hirose, T.,Maita, N.,Gouda, H.,Koseki, J.,Yamamoto, T.,Sugawara, A.,Nakano, H.,Hirono, S.,Shiomi, K.,Watanabe, T.,Taniguchi, H.,Sharpless, K.B.,Omura, S.,Sunazuka, T. Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor Proc.Natl.Acad.Sci.USA 2013 110 15892 15897 3VXK 24131983 Crystal structure of OsD14 2012-09-18 2013-09-25 Nakamura, H.,Xue, Y.-L.,Miyakawa, T.,Hou, F.,Qin, H.-M.,Fukui, K.,Shi, X.,Ito, E.,Ito, S.,Park, S.-H.,Miyauchi, Y.,Asano, A.,Totsuka, N.,Ueda, T.,Tanokura, M.,Asami, T. Molecular mechanism of strigolactone perception by DWARF14 Nat Commun 2013 4 2613 2613 4H4R Crystal Structure of Ferredoxin reductase, BphA4 E175C/Q177G mutant (oxidized form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 4H4S Crystal Structure of Ferredoxin reductase, BphA4 E175C/Q177G mutant (reduced form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 4H4T Crystal Structure of Ferredoxin reductase, BphA4 T176R mutant (oxidized form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 4H4U Crystal Structure of Ferredoxin reductase, BphA4 T176R mutant (reduced form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 4H4V Crystal Structure of Ferredoxin reductase, BphA4 E175C/T176R/Q177G mutant (oxidized form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 4H4W Crystal Structure of Ferredoxin reductase, BphA4 E175C/T176R/Q177G mutant (reduced form) 2012-09-18 2013-10-09 Nishizawa, A.,Harada, A.,Senda, M.,Tachihara, Y.,Muramatsu, D.,Kishigami, S.,Mori, S.,Sugiyama, K.,Senda, T.,Kimura, S. Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4 To be Published 0 0 0 0 3W0T Human Glyoxalase I with an N-hydroxypyridone derivative inhibitor 2012-11-02 2013-11-06 Koyano, H.,Aoki, T.,Yamamoto, S.,Kobayashi, T.,Miura, T.,Ohara, K.,Fukami, T.A.,Irie, M.,Sakamoto, H. N-Hydroxypyridone-based glyoxalase I inhibitors mimicking binding interactions of the substrate To be Published 0 0 0 0 4HZX 23824808 Crystal structure of influenza A neuraminidase N3 complexed with oseltamivir 2012-11-15 2013-11-06 Li, Q.,Qi, J.,Wu, Y.,Kiyota, H.,Tanaka, K.,Suhara, Y.,Ohrui, H.,Suzuki, Y.,Vavricka, C.J.,Gao, G.F. Functional and structural analysis of influenza virus neuraminidase N3 offers further insight into the mechanisms of oseltamivir resistance. J.Virol. 2013 87 10016 10024 3WG1 24036446 Crystal structure of Agrocybe cylindracea galectin with lactose 2013-07-25 2013-11-27 Kuwabara, N.,Hu, D.,Tateno, H.,Makyio, H.,Hirabayashi, J.,Kato, R. Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett. 2013 587 3620 3625 3WG2 24036446 Crystal structure of Agrocybe cylindracea galectin mutant (N46A) 2013-07-25 2013-11-27 Kuwabara, N.,Hu, D.,Tateno, H.,Makyio, H.,Hirabayashi, J.,Kato, R. Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett. 2013 587 3620 3625 3WG3 24036446 Crystal structure of Agrocybe cylindracea galectin with blood type A antigen tetraose 2013-07-25 2013-11-27 Kuwabara, N.,Hu, D.,Tateno, H.,Makyio, H.,Hirabayashi, J.,Kato, R. Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett. 2013 587 3620 3625 3WG4 24036446 Crystal structure of Agrocybe cylindracea galectin mutant (N46A) with blood type A antigen tetraose 2013-07-25 2013-11-27 Kuwabara, N.,Hu, D.,Tateno, H.,Makio, H.,Hirabayashi, J.,Kato, R. Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett. 2013 587 3620 3625 3WIX 24215352 Crystal structure of Mcl-1 in complex with compound 4 2013-09-26 2013-11-27 Tanaka, Y.,Aikawa, K.,Nishida, G.,Homma, M.,Sogabe, S.,Igaki, S.,Hayano, Y.,Sameshima, T.,Miyahisa, I.,Kawamoto, T.,Tawada, M.,Imai, Y.,Inazuka, M.,Cho, N.,Imaeda, Y.,Ishikawa, T. Discovery of potent Mcl-1/Bcl-xL dual inhibitors by using a hybridization strategy based on structural analysis of target proteins. J.Med.Chem. 2013 56 9635 9645 4N0N 24369429 Crystal structure of Arterivirus nonstructural protein 10 (helicase) 2013-10-02 2014-01-08 Deng, Z.,Lehmann, K.C.,Li, X.,Feng, C.,Wang, G.,Zhang, Q.,Qi, X.,Yu, L.,Zhang, X.,Feng, W.,Wu, W.,Gong, P.,Tao, Y.,Posthuma, C.C.,Snijder, E.J.,Gorbalenya, A.E.,Chen, Z. Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase. Nucleic Acids Res. 2014 42 3464 3477 3WHT 24498414 Crystal structure of ERGIC-53/MCFD2, Calcium-free form 2013-08-30 2014-01-15 Satoh, T.,Suzuki, K.,Yamaguchi, T.,Kato, K. Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36 Plos One 2014 9 0 0 3WAZ 24458096 Crystal structure of a restriction enzyme PabI in complex with DNA 2013-05-10 2014-01-29 Miyazono, K.,Furuta, Y.,Watanabe-Matsui, M.,Miyakawa, T.,Ito, T.,Kobayashi, I.,Tanokura, M. A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi. Nat Commun 2014 5 3178 3178 3WGW 24474685 Structure of PCNA bound to a small molecule inhibitor 2013-08-12 2014-02-05 Inoue, A.,Kikuchi, S.,Hishiki, A.,Shao, Y.,Heath, R.,Evison, B.J.,Actis, M.,Canman, C.E.,Hashimoto, H.,Fujii, N. A small molecule inhibitor of monoubiquitinated Proliferating Cell Nuclear Antigen (PCNA) inhibits repair of interstrand DNA cross-link, enhances DNA double strand break, and sensitizes cancer cells to cisplatin. J.Biol.Chem. 2014 289 7109 7120 3WMY 24482228 Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase 2013-11-29 2014-02-05 Maehara, T.,Fujimoto, Z.,Ichinose, H.,Michikawa, M.,Harazono, K.,Kaneko, S. Crystal structure and characterization of the glycoside hydrolase family 62 alpha-L-arabinofuranosidase from Streptomyces coelicolor J.Biol.Chem. 2014 289 7962 7972 3WMZ 24482228 Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase ethylmercury derivative 2013-11-29 2014-02-05 Maehara, T.,Fujimoto, Z.,Ichinose, H.,Michikawa, M.,Harazono, K.,Kaneko, S. Crystal structure and characterization of the glycoside hydrolase family 62 alpha-L-arabinofuranosidase from Streptomyces coelicolor J.Biol.Chem. 2014 289 7962 7972 3WN2 24482228 Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with xylohexaose 2013-11-29 2014-02-05 Maehara, T.,Fujimoto, Z.,Ichinose, H.,Michikawa, M.,Harazono, K.,Kaneko, S. Crystal structure and characterization of the glycoside hydrolase family 62 alpha-L-arabinofuranosidase from Streptomyces coelicolor J.Biol.Chem. 2014 289 7962 7972 3WNN 24616103 D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltooctaose 2013-12-10 2014-02-05 Suzuki, N.,Fujimoto, Z.,Kim, Y.M.,Momma, M.,Kishine, N.,Suzuki, R.,Suzuki, S.,Kitamura, S.,Kobayashi, M.,Kimura, A.,Funane, K. Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase. J.Biol.Chem. 2014 289 12040 12051 3WN4 24474703 Crystal structure of human TLR8 in complex with DS-877 2013-12-02 2014-02-19 Kokatla, H.P.,Sil, D.,Tanji, H.,Ohto, U.,Malladi, S.S.,Fox, L.M.,Shimizu, T.,David, S.A. Structure-based design of novel human Toll-like receptor 8 agonists. Chemmedchem 2014 9 719 723 3W6Y Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-2-199 2013-02-27 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-2-199 To be Published 0 0 0 0 3W7O Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-3-165 2013-03-02 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-3-165 To be Published 0 0 0 0 3W7P Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-4-031 2013-03-02 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-4-031 To be Published 0 0 0 0 3W7Q Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-5-127 2013-03-02 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-5-127 To be Published 0 0 0 0 3WOF 24589779 Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain 2013-12-26 2014-03-12 Tagami, S.,Sekine, S.,Minakhin, L.,Esyunina, D.,Akasaka, R.,Shirouzu, M.,Kulbachinskiy, A.,Severinov, K.,Yokoyama, S. Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev. 2014 28 521 531 3WPY 24633372 Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447V/P500S 2014-01-17 2014-03-12 Ohta, Y.,Hatada, Y.,Hidaka, Y.,Shimane, Y.,Usui, K.,Ito, T.,Fujita, K.,Yokoi, G.,Mori, M.,Sato, S.,Miyazaki, T.,Nishikawa, A.,Tonozuka, T. 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Structural insights into binding of inhibitors to soluble epoxide hydrolase gained by fragment screening and X-ray crystallography. Bioorg.Med.Chem. 2014 22 2427 2434 3WKB 24656800 Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor 2013-10-18 2014-04-16 Amano, Y.,Yamaguchi, T.,Tanabe, E. Structural insights into binding of inhibitors to soluble epoxide hydrolase gained by fragment screening and X-ray crystallography. Bioorg.Med.Chem. 2014 22 2427 2434 3WKD 24656800 Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor 2013-10-18 2014-04-16 Amano, Y.,Yamaguchi, T.,Tanabe, E. Structural insights into binding of inhibitors to soluble epoxide hydrolase gained by fragment screening and X-ray crystallography. Bioorg.Med.Chem. 2014 22 2427 2434 4N0H 24692665 Crystal structure of S. cerevisiae mitochondrial GatFAB 2013-10-02 2014-04-16 Araiso, Y.,Huot, J.L.,Sekiguchi, T.,Frechin, M.,Fischer, F.,Enkler, L.,Senger, B.,Ishitani, R.,Becker, H.D.,Nureki, O. Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases Nucleic Acids Res. 2014 42 6052 6063 3W8K 24777102 Crystal structure of class C beta-lactamase Mox-1 2013-03-15 2014-04-23 Oguri, T.,Furuyama, T.,Okuno, T.,Ishii, Y.,Tateda, K.,Bonomo, R.A.,Shimizu-Ibuka, A. Crystal structure of Mox-1, a unique plasmid-mediated class C beta-lactamase with hydrolytic activity towards moxalactam Antimicrob.Agents Chemother. 2014 58 3914 3920 3WF1 Crystal structure of human beta-galactosidase in complex with 6S-NBI-GJ 2013-07-16 2014-04-23 Suzuki, H.,Ohto, U.,Higaki, K.,Mena-Barragan, T.,Aguilar-Moncayo, M.,Ortiz Mellet, C.,Nanba, E.,Garcia Fernandez, J.M.,Suzuki, Y.,Shimizu, T. 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Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D 2014 70 1271 1280 3WAE 24419392 X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8 2013-05-02 2014-05-21 Wang, S.,Ogata, M.,Horita, S.,Ohtsuka, J.,Nagata, K.,Tanokura, M. A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8. Acta Crystallogr.,Sect.D 2014 70 196 202 4KTP 24828502 Crystal structure of 2-O-alpha-glucosylglycerol phosphorylase in complex with glucose 2013-05-21 2014-05-21 Touhara, K.K.,Nihira, T.,Kitaoka, M.,Nakai, H.,Fushinobu, S. 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A simplified BPTI variant with poly Lys amino acid tag (C3K) at the C-terminus to be published 0 0 0 0 3WI7 24770384 Crystal Structure of the Novel Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58 2013-09-06 2014-07-23 Guan, L.,Yabuki, H.,Okai, M.,Ohtsuka, J.,Tanokura, M. Crystal structure of the novel haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 reveals a special halide-stabilizing pair and enantioselectivity mechanism. Appl.Microbiol.Biotechnol. 2014 98 8573 8582 3WKS 25002468 Crystal structure of the SepCysS-SepCysE N-terminal domain complex from 2013-10-30 2014-07-30 Liu, Y.,Nakamura, A.,Nakazawa, Y.,Asano, N.,Ford, K.A.,Hohn, M.J.,Tanaka, I.,Yao, M.,Soll, D. Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. 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