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Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD(+)-dependent Sir2 histone/protein deacetylases. Proc.Natl.Acad.Sci.Usa 2004 101 8563 8568 1UII 15260975 Crystal structure of Geminin coiled-coil domain 2003-07-16 2004-07-16 Saxena, S.,Yuan, P.,Dhar, S.K.,Senga, T.,Takeda, D.,Robinson, H.,Kornbluth, S.,Swaminathan, K.,Dutta, A. A dimerized coiled-coil domain and an adjoining part of geminin interact with two sites on Cdt1 for replication inhibition Mol.Cell 2004 15 245 258 1TXL Crystal structure of metal-binding protein yodA from E. coli, Pfam DUF149 2004-07-05 2004-07-20 Eswaramoorthy, S.,Swaminathan, S. Crystal structure of a hypothetical protein yodA To be Published 0 0 0 0 1S63 15248757 Human protein farnesyltransferase complexed with L-778,123 and FPP 2004-01-22 2004-07-27 Reid, T.S.,Long, S.B.,Beese, L.S. Crystallographic Analysis Reveals that Anticancer Clinical Candidate L-778,123 Inhibits Protein Farnesyltransferase and Geranylgeranyltransferase-I by Different Binding Modes. Biochemistry 2004 43 9000 9008 1Q32 17707402 Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 2003-07-28 2004-09-07 He, X.,van Waardenburg, R.C.,Babaoglu, K.,Price, A.C.,Nitiss, K.C.,Nitiss, J.L.,Bjornsti, M.A.,White, S.W. Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol. 2007 372 1070 1081 1QX4 14609324 Structrue of S127P mutant of cytochrome b5 reductase 2003-09-04 2004-09-14 Bewley, M.C.,Davis, C.A.,Marohnic, C.C.,Taormina, D.,Barber, M.J. The structure of the S127P mutant of cytochrome b5 reductase that causes methemoglobinemia shows the AMP moiety of the flavin occupying the substrate binding site Biochemistry 2003 42 13145 13151 1TXU 15339665 Crystal Structure of the Vps9 Domain of Rabex-5 2004-07-06 2004-09-21 Delprato, A.,Merithew, E.,Lambright, D.G. Structure, exchange determinants, and family-wide rab specificity of the tandem helical bundle and Vps9 domains of Rabex-5 Cell(Cambridge,Mass.) 2004 118 607 617 1SDE 15170342 Toward Better Antibiotics: Crystal Structure Of D-Ala-D-Ala Peptidase inhibited by a novel bicyclic phosphate inhibitor 2004-02-13 2004-10-12 Silvaggi, N.R.,Kaur, K.,Adediran, S.A.,Pratt, R.F.,Kelly, J.A. Toward better antibiotics: crystallographic studies of a novel class of DD-peptidase/beta-lactamase inhibitors Biochemistry 2004 43 7046 7053 1U3W 15449945 Crystal Structure of Human Alcohol Dehydrogenase Gamma-2-Gamma-2 Isoform Complexed with N-1-Methylheptylformamide Determined to 1.45 Angstrom Resolution 2004-07-23 2004-10-26 Gibbons, B.J.,Hurley, T.D. Structure of three class I human alcohol dehydrogenases complexed with isoenzyme specific formamide inhibitors Biochemistry 2004 43 12555 12562 1XC9 15548515 Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication 2004-09-01 2004-12-14 Hsu, G.W.,Huang, X.,Luneva, N.P.,Geacintov, N.E.,Beese, L.S. Structure of a High Fidelity DNA Polymerase Bound to a Benzo[a]pyrene Adduct That Blocks Replication J.Biol.Chem. 2005 280 3764 3770 1T4F 15715460 Structure of human MDM2 in complex with an optimized p53 peptide 2004-04-29 2005-02-08 Grasberger, B.L.,Lu, T.,Schubert, C.,Parks, D.J.,Carver, T.E.,Koblish, H.K.,Cummings, M.D.,LaFrance, L.V.,Milkiewicz, K.L. Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells J.Med.Chem. 2005 48 909 912 1Y8X 15694336 Structural basis for recruitment of Ubc12 by an E2-binding domain in NEDD8's E1 2004-12-13 2005-02-08 Huang, D.T.,Paydar, A.,Zhuang, M.,Waddell, M.B.,Holton, J.M.,Schulman, B.A. Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. Mol.Cell 2005 17 341 350 1XZO 15723536 Identification of a disulfide switch in BsSco, a member of the Sco family of cytochrome c oxidase assembly proteins 2004-11-12 2005-03-01 Ye, Q.,Imriskova-Sosova, I.,Hill, B.C.,Jia, Z. Identification of a Disulfide Switch in BsSco, a Member of the Sco Family of Cytochrome c Oxidase Assembly Proteins Biochemistry 2005 44 2934 2942 1YCZ 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD0 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima bound to its catalytic divalent cation: manganese 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD1 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima bound to its catalytic divalent cation: magnesium 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD2 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima: Point mutant Y19F bound to the catalytic divalent cation 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD3 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima: Point mutant Y43F bound to its catalytic divalent cation 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD4 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima: Point mutant Y29F bound to its catalytic divalent cation 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD5 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima: Point mutant N88A bound to its catalytic divalent cation 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1YD6 15692561 Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax 2004-12-23 2005-03-01 Truglio, J.J.,Rhau, B.,Croteau, D.L.,Wang, L.,Skorvaga, M.,Karakas, E.,Dellavecchia, M.J.,Wang, H.,Van Houten, B.,Kisker, C. Structural insights into the first incision reaction during nucleotide excision repair Embo J. 2005 24 885 894 1XOI 15603973 Human Liver Glycogen Phosphorylase A complexed with Chloroindoloyl glycine amide 2004-10-06 2005-04-12 Wright, S.W.,Rath, V.L.,Genereux, P.E.,Hageman, D.L.,Levy, C.B.,McClure, L.D.,McCoid, S.C.,McPherson, R.K.,Schelhorn, T.M.,Wilder, D.E.,Zavadoski, W.J.,Gibbs, E.M.,Treadway, J.L. 5-Chloroindoloyl glycine amide inhibitors of glycogen phosphorylase: synthesis, in vitro, in vivo, and X-ray crystallographic characterization. Bioorg.Med.Chem.Lett. 2005 15 459 465 1TF9 15388919 Streptomyces griseus aminopeptidase complexed with P-Iodo-L-Phenylalanine 2004-05-27 2005-05-31 Reiland, V.,Gilboa, R.,Spungin-Bialik, A.,Schomburg, D.,Shoham, Y.,Blumberg, S.,Shoham, G. Binding of inhibitory aromatic amino acids to Streptomyces griseus aminopeptidase. Acta Crystallogr.,Sect.D 2004 60 1738 1746 1TKH Streptomyces griseus aminopeptidase complexed with D-Phenylalanine 2004-06-08 2005-06-14 Reiland, V.,Gilboa, R.,Spungin-Bialik, A.,Schomburg, D.,Shoham, Y.,Blumberg, S.,Shoham, G. Interactions of D Amino Acids with Streptomyces griseus Aminopeptidase To be Published 0 0 0 0 1TKJ Streptomyces griseus aminopeptidase complexed with D-Methionine 2004-06-08 2005-06-14 Reiland, V.,Gilboa, R.,Spungin-Bialik, A.,Schomburg, D.,Shoham, Y.,Blumberg, S.,Shoham, G. Interactions of D Amino Acids with Streptomyces griseus Aminopeptidase To be Published 0 0 0 0 1TGU The crystal structure of bovine liver catalase without NADPH 2004-05-31 2005-07-05 Sugadev, R.,Balasundaresan, D.,Ponnuswamy, M.N.,Kumaran, D.,Swaminathan, S.,Sekar, K. The crystal structure of bovine liver catalase TO BE PUBLISHED 0 0 0 0 1TH2 crystal structure of NADPH depleted bovine liver catalase complexed with azide 2004-06-01 2005-07-05 Sugadev, R.,Balasundaresan, D.,Ponnuswamy, M.N.,Kumaran, D.,Swaminathan, S.,Sekar, K. The crystal structure of bovine liver catalase TO BE PUBLISHED 0 0 0 0 1TH3 Crystal structure of NADPH depleted bovine live catalase complexed with cyanide 2004-06-01 2005-07-05 Sugadev, R.,Balasundaresan, D.,Ponnuswamy, M.N.,Kumaran, D.,Swaminathan, S.,Sekar, K. The crystal structure of bovine liver catalase TO BE PUBLISHED 0 0 0 0 1TH4 crystal structure of NADPH depleted bovine liver catalase complexed with 3-amino-1,2,4-triazole 2004-06-01 2005-07-05 Sugadev, R.,Ponnuswamy, M.N.,Kumaran, D.,Swaminathan, S.,Sekar, K. crystal structure of bovine liver catalase TO BE PUBLISHED 0 0 0 0 1ZKX 15938619 Crystal structure of Glu158Ala/Thr159Ala/Asn160Ala- a triple mutant of Clostridium botulinum neurotoxin E catalytic domain 2005-05-04 2005-07-05 Agarwal, R.,Binz, T.,Swaminathan, S. Analysis of Active Site Residues of Botulinum Neurotoxin E by Mutational, Functional, and Structural Studies: Glu335Gln Is an Apoenzyme. Biochemistry 2005 44 8291 8302 1Y98 16101277 Structure of the BRCT repeats of BRCA1 bound to a CtIP phosphopeptide. 2004-12-14 2005-08-30 Varma, A.K.,Brown, R.S.,Birrane, G.,Ladias, J.A.A. Structural Basis for Cell Cycle Checkpoint Control by the BRCA1-CtIP Complex. Biochemistry 2005 44 10941 10946 1WVA 16141327 Crystal structure of human arginase I from twinned crystal 2004-12-14 2005-09-06 Di Costanzo, L.,Sabio, G.,Mora, A.,Rodriguez, P.C.,Ochoa, A.C.,Centeno, F.,Christianson, D.W. Crystal structure of human arginase I at 1.29 A resolution and exploration of inhibition in the immune response Proc.Natl.Acad.Sci.Usa 2005 102 13058 13063 2AEK 16171386 R304K trichodiene synthase 2005-07-22 2005-10-04 Vedula, L.S.,Cane, D.E.,Christianson, D.W. Role of arginine-304 in the diphosphate-triggered active site closure mechanism of trichodiene synthase. Biochemistry 2005 44 12719 12727 2AEL 16171386 R304K Trichodiene Synthase: Complex With Mg, Pyrophosphate, and (4R)-7-Azabisabolene 2005-07-22 2005-10-04 Vedula, L.S.,Cane, D.E.,Christianson, D.W. Role of arginine-304 in the diphosphate-triggered active site closure mechanism of trichodiene synthase. 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J.Biol.Chem. 2006 281 18723 18733 2GGM 16627479 Human centrin 2 xeroderma pigmentosum group C protein complex 2006-03-24 2006-04-25 Thompson, J.R.,Ryan, Z.C.,Salisbury, J.L.,Kumar, R. The structure of the human centrin 2-xeroderma pigmentosum group C protein complex. J.Biol.Chem. 2006 281 18746 18752 2FRF 16777231 Horse Heart Myoglobin, Nitrite Adduct, Crystal Soak 2006-01-19 2006-05-30 Copeland, D.M.,Soares, A.S.,West, A.H.,Richter-Addo, G.B. Crystal structures of the nitrite and nitric oxide complexes of horse heart myoglobin. J.Inorg.Biochem. 2006 100 1413 1425 2GM4 16807292 An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNA 2006-04-05 2006-06-27 Kamtekar, S.,Ho, R.S.,Cocco, M.J.,Li, W.,Wenwieser, S.V.,Boocock, M.R.,Grindley, N.D.,Steitz, T.A. Implications of structures of synaptic tetramers of gamma delta resolvase for the mechanism of recombination. Proc.Natl.Acad.Sci.Usa 2006 103 10642 10647 2FG8 16790936 Structure of Human Ferritin L Chain 2005-12-21 2006-07-04 Wang, Z.,Li, C.,Ellenburg, M.,Soistman, E.,Ruble, J.,Wright, B.,Ho, J.X.,Carter, D.C. Structure of human ferritin L chain. ACTA CRYSTALLOGR.,SECT.D 2006 62 800 806 2FFX 16790936 Structure of Human Ferritin L. Chain 2005-12-20 2006-07-11 Wang, Z.M.,Li, C.,Ellenburg, M.P.,Soistman, E.M.,Ruble, J.R.,Wright, B.S.,Ho, J.X.,Carter, D.C. Structure of human ferritin L chain ACTA CRYSTALLOGR.,SECT.D 2006 62 800 806 2AMJ 16630630 Crystal Structure of Modulator of Drug Activity B from Escherichia coli O157:H7 2005-08-09 2006-07-18 Adams, M.A.,Jia, Z. Modulator of drug activity B from Escherichia coli: crystal structure of a prokaryotic homologue of DT-diaphorase. J.Mol.Biol. 2006 359 455 465 2NRA 17124167 Crystal structure of Pi initiator protein in complex with iteron DNA 2006-11-01 2006-11-14 Swan, M.K.,Bastia, D.,Davies, C. Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc.Natl.Acad.Sci.Usa 2006 103 18481 18486 2IG0 17190600 Structure of 53BP1/methylated histone peptide complex 2006-09-22 2007-01-02 Botuyan, M.V.,Lee, J.,Ward, I.M.,Kim, J.E.,Thompson, J.R.,Chen, J.,Mer, G. Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair. Cell(Cambridge,Mass.) 2006 127 1361 1373 2NRV 17245438 Crystal structure of the C-terminal half of UvrC 2006-11-02 2007-02-06 Karakas, E.,Truglio, J.J.,Croteau, D.,Rhau, B.,Wang, L.,Van Houten, B.,Kisker, C. Structure of the C-terminal half of UvrC reveals an RNase H endonuclease domain with an Argonaute-like catalytic triad. Embo J. 2007 26 613 622 2B8O Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor VIIa/Soluble Tissue Factor Complex 2005-10-08 2007-02-13 Bajaj, S.P.,Schmidt, A.E.,Padmanabhan, K. Crystal Structure of Factor VIIa/soluble Tissue Factor complexed with Glu-Gly-Arg-Chloromethyl ketone To be published 0 0 0 0 2C45 17001646 NATIVE PRECURSOR OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE 2005-10-15 2007-03-06 Gopalan, G.,Chopra, S.,Ranganathan, A.,Swaminathan, K. Crystal structure of uncleaved L-aspartate-alpha-decarboxylase from Mycobacterium tuberculosis. Proteins 2006 65 796 802 2P0W Human histone acetyltransferase 1 (HAT1) 2007-03-01 2007-03-13 Wu, H.,Min, J.,Zeng, H.,Loppnau, P.,Weigelt, J.,Sundstrom, M.,Arrowsmith, C.H.,Edwards, A.M.,Bochkarev, A.,Plotnikov, A.N. The crystal structure of human histone acetyltransferase 1 (HAT1) in complex with acetylcoenzyme A and histone peptide H4 To be Published 0 0 0 0 2HXW 17456748 Crystal Structure of Peb3 from Campylobacter jejuni 2006-08-04 2007-05-01 Rangarajan, E.S.,Bhatia, S.,Watson, D.C.,Munger, C.,Cygler, M.,Matte, A.,Young, N.M. Structural context for protein N-glycosylation in bacteria: The structure of PEB3, an adhesin from Campylobacter jejuni. Protein Sci. 2007 16 990 995 2PHA 17469833 Crystal structure of native, unliganded human arginase at 1.90 resolution 2007-04-10 2007-05-08 Di Costanzo, L.,Pique, M.E.,Christianson, D.W. Crystal structure of human arginase I complexed with thiosemicarbazide reveals an unusual thiocarbonyl mu-sulfide ligand in the binuclear manganese cluster. J.Am.Chem.Soc. 2007 129 6388 6389 2PHO 17469833 Crystal structure of human arginase I complexed with thiosemicarbazide at 1.95 resolution 2007-04-11 2007-05-08 Di Costanzo, L.,Pique, M.E.,Christianson, D.W. Crystal structure of human arginase I complexed with thiosemicarbazide reveals an unusual thiocarbonyl mu-sulfide ligand in the binuclear manganese cluster. 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Chem.Biol. 2007 14 533 542 2IDR 17322339 Crystal structure of translation initiation factor EIF4E from wheat 2006-09-15 2007-06-12 Monzingo, A.F.,Dhaliwal, S.,Dutt-Chaudhuri, A.,Lyon, A.,Sadow, J.H.,Hoffman, D.W.,Robertus, J.D.,Browning, K.S. The structure of eukaryotic translation initiation factor-4E from wheat reveals a novel disulfide bond. Plant Physiol. 2007 143 1504 1518 2NTE 17550235 Crystal Structure of the BARD1 BRCT Domains 2006-11-07 2007-06-12 Birrane, G.,Varma, A.K.,Soni, A.,Ladias, J.A. Crystal structure of the BARD1 BRCT domains. Biochemistry 2007 46 7706 7712 2HO2 17686488 Structure of human FE65-WW domain in complex with hMena peptide. 2006-07-13 2007-07-10 Meiyappan, M.,Birrane, G.,Ladias, J.A. Structural Basis for Polyproline Recognition by the FE65 WW Domain. J.Mol.Biol. 2007 372 970 980 2OEI 17686488 Crystal structure of human FE65-WW domain in complex with human Mena peptide 2006-12-29 2007-07-10 Meiyappan, M.,Birrane, G.,Ladias, J.A. 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