PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 2WYX 20036259 Neutron structure of a class A Beta-lactamase Toho-1 E166A R274N R276N triple mutant 2009-11-20 2010-01-12 Tomanicek, S.J.,Blakeley, M.P.,Cooper, J.,Chen, Y.,Afonine, P.,Coates, L. Neutron Diffraction Studies of a Class a Beta-Lactamase Toho-1 E166A R274N R276N Triple Mutant J.Mol.Biol. 2010 396 1070 0 2XQZ 21168411 Neutron structure of the perdeuterated Toho-1 R274N R276N double mutant beta-lactamase 2010-09-08 2010-12-22 Tomanicek, S.J.,Wang, K.K.,Weiss, K.L.,Blakeley, M.P.,Cooper, J.,Chen, Y.,Coates, L. The Active Site Protonation States of Perdeuterated Toho-1 Beta-Lactamase Determined by Neutron Diffraction Support a Role for Glu166 as the General Base in Acylation. FEBS Lett. 2011 585 364 0 3QF6 21472814 Neutron structure of type-III Antifreeze Protein allows the reconstruction of AFP-ice interface 2011-01-21 2011-06-22 Howard, E.I.,Blakeley, M.P.,Haertlein, M.,Petit-Haertlein, I.,Mitschler, A.,Fisher, S.J.,Cousido-Siah, A.,Salvay, A.G.,Popov, A.,Muller-Dieckmann, C.,Petrova, T.,Podjarny, A. Neutron structure of type-III antifreeze protein allows the reconstruction of AFP-ice interface. J.Mol.Recognit. 2011 24 724 732 3QF6 21472814 Neutron structure of type-III Antifreeze Protein allows the reconstruction of AFP-ice interface 2011-01-21 2011-06-22 Howard, E.I.,Blakeley, M.P.,Haertlein, M.,Petit-Haertlein, I.,Mitschler, A.,Fisher, S.J.,Cousido-Siah, A.,Salvay, A.G.,Popov, A.,Muller-Dieckmann, C.,Petrova, T.,Podjarny, A. Neutron structure of type-III antifreeze protein allows the reconstruction of AFP-ice interface. J.Mol.Recognit. 2011 24 724 732 3RYG 22194331 128 hours neutron structure of perdeuterated rubredoxin 2011-05-11 2011-12-28 Munshi, P.,Chung, S.L.,Blakeley, M.P.,Weiss, K.L.,Myles, D.A.,Meilleur, F. Rapid visualization of hydrogen positions in protein neutron crystallographic structures. Acta Crystallogr.,Sect.D 2012 68 35 41 3RZ6 22194331 Neutron structure of perdeuterated rubredoxin using 40 hours 1st pass data 2011-05-11 2011-12-28 Munshi, P.,Chung, S.L.,Blakeley, M.P.,Weiss, K.L.,Myles, D.A.,Meilleur, F. Rapid visualization of hydrogen positions in protein neutron crystallographic structures. Acta Crystallogr.,Sect.D 2012 68 35 41 3RZT 22194331 Neutron structure of perdeuterated rubredoxin using rapid (14 hours) data 2011-05-12 2011-12-28 Munshi, P.,Chung, S.L.,Blakeley, M.P.,Weiss, K.L.,Myles, D.A.,Meilleur, F. Rapid visualization of hydrogen positions in protein neutron crystallographic structures. Acta Crystallogr.,Sect.D 2012 68 35 41 3SS2 22194331 Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data 2011-07-07 2011-12-28 Munshi, P.,Chung, S.L.,Blakeley, M.P.,Weiss, K.L.,Myles, D.A.,Meilleur, F. Rapid visualization of hydrogen positions in protein neutron crystallographic structures. Acta Crystallogr.,Sect.D 2012 68 35 41 3R98 Joint Neutron and X-ray structure of Cytochrome c peroxidase 2011-03-25 2012-04-04 Gumiero, A.,Blakeley, M.P.,Metcalfe, C.L.,Murphy, E.J.,Raven, E.L.,Moody, P.C.E. Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase To be Published 0 0 0 0 3R98 Joint Neutron and X-ray structure of Cytochrome c peroxidase 2011-03-25 2012-04-04 Gumiero, A.,Blakeley, M.P.,Metcalfe, C.L.,Murphy, E.J.,Raven, E.L.,Moody, P.C.E. Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase To be Published 0 0 0 0 3R99 Joint Neutron and X-ray structure of Cytochrome c peroxidase 2011-03-25 2012-04-04 Gumiero, A.,Blakeley, M.P.,Metcalfe, C.L.,Murphy, E.J.,Raven, E.L.,Moody, P.C.E. Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase To be Published 0 0 0 0 3R99 Joint Neutron and X-ray structure of Cytochrome c peroxidase 2011-03-25 2012-04-04 Gumiero, A.,Blakeley, M.P.,Metcalfe, C.L.,Murphy, E.J.,Raven, E.L.,Moody, P.C.E. Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase To be Published 0 0 0 0 4JEC 23772563 Joint neutron and X-ray structure of per-deuterated HIV-1 protease in complex with clinical inhibitor amprenavir 2013-02-26 2013-07-24 Weber, I.T.,Waltman, M.J.,Mustyakimov, M.,Blakeley, M.P.,Keen, D.A.,Ghosh, A.K.,Langan, P.,Kovalevsky, A.Y. Joint X-ray/Neutron Crystallographic Study of HIV-1 Protease with Clinical Inhibitor Amprenavir: Insights for Drug Design. J.Med.Chem. 2013 56 5631 5635 4JEC 23772563 Joint neutron and X-ray structure of per-deuterated HIV-1 protease in complex with clinical inhibitor amprenavir 2013-02-26 2013-07-24 Weber, I.T.,Waltman, M.J.,Mustyakimov, M.,Blakeley, M.P.,Keen, D.A.,Ghosh, A.K.,Langan, P.,Kovalevsky, A.Y. Joint X-ray/Neutron Crystallographic Study of HIV-1 Protease with Clinical Inhibitor Amprenavir: Insights for Drug Design. J.Med.Chem. 2013 56 5631 5635 4CVI 25013070 Neutron Structure of Ferric Cytochrome c Peroxidase - Deuterium exchanged at room temperature 2014-03-27 2014-07-16 Casadei, C.M.,Gumiero, A.,Metcalfe, C.L.,Murphy, E.J.,Basran, J.,Concilio, M.G.,Teixeira, S.C.M.,Schrader, T.E.,Fielding, A.J.,Ostermann, A.,Blakeley, M.P.,Raven, E.L.,Moody, P.C.E. Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase Science 2014 345 193 0 4CVI 25013070 Neutron Structure of Ferric Cytochrome c Peroxidase - Deuterium exchanged at room temperature 2014-03-27 2014-07-16 Casadei, C.M.,Gumiero, A.,Metcalfe, C.L.,Murphy, E.J.,Basran, J.,Concilio, M.G.,Teixeira, S.C.M.,Schrader, T.E.,Fielding, A.J.,Ostermann, A.,Blakeley, M.P.,Raven, E.L.,Moody, P.C.E. Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase Science 2014 345 193 0 4QXK 25271401 Joint X-ray/neutron structure of PKGIbeta in complex with cGMP 2014-07-21 2014-11-12 Huang, G.Y.,Gerlits, O.O.,Blakeley, M.P.,Sankaran, B.,Kovalevsky, A.Y.,Kim, C. Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design. Biochemistry 2014 53 6725 6727 4QXK 25271401 Joint X-ray/neutron structure of PKGIbeta in complex with cGMP 2014-07-21 2014-11-12 Huang, G.Y.,Gerlits, O.O.,Blakeley, M.P.,Sankaran, B.,Kovalevsky, A.Y.,Kim, C. Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design. Biochemistry 2014 53 6725 6727 5CE4 27006775 High Resolution X-Ray and Neutron diffraction structure of H-FABP 2015-07-06 2016-03-09 Howard, E.I.,Guillot, B.,Blakeley, M.P.,Haertlein, M.,Moulin, M.,Mitschler, A.,Cousido-Siah, A.,Fadel, F.,Valsecchi, W.M.,Tomizaki, T.,Petrova, T.,Claudot, J.,Podjarny, A. High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP-oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution. Iucrj 2016 3 115 126 5CE4 27006775 High Resolution X-Ray and Neutron diffraction structure of H-FABP 2015-07-06 2016-03-09 Howard, E.I.,Guillot, B.,Blakeley, M.P.,Haertlein, M.,Moulin, M.,Mitschler, A.,Cousido-Siah, A.,Fadel, F.,Valsecchi, W.M.,Tomizaki, T.,Petrova, T.,Claudot, J.,Podjarny, A. High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP-oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution. Iucrj 2016 3 115 126 5JPR 27897163 Neutron Structure of Compound II of Ascorbate Peroxidase 2016-05-04 2016-12-21 Kwon, H.,Basran, J.,Casadei, C.M.,Fielding, A.J.,Schrader, T.E.,Ostermann, A.,Devos, J.M.,Aller, P.,Blakeley, M.P.,Moody, P.C.,Raven, E.L. Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme. Nat Commun 2016 7 13445 13445 5JPR 27897163 Neutron Structure of Compound II of Ascorbate Peroxidase 2016-05-04 2016-12-21 Kwon, H.,Basran, J.,Casadei, C.M.,Fielding, A.J.,Schrader, T.E.,Ostermann, A.,Devos, J.M.,Aller, P.,Blakeley, M.P.,Moody, P.C.,Raven, E.L. Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme. Nat Commun 2016 7 13445 13445 6BBS 29429876 Joint X-ray/neutron structure of human carbonic anhydrase II in complex with brinzolamide 2017-10-19 2018-02-28 Kovalevsky, A.,Aggarwal, M.,Velazquez, H.,Cuneo, M.J.,Blakeley, M.P.,Weiss, K.L.,Smith, J.C.,Fisher, S.Z.,McKenna, R. ""To Be or Not to Be"" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation. Structure 2018 26 383 0 6BBS 29429876 Joint X-ray/neutron structure of human carbonic anhydrase II in complex with brinzolamide 2017-10-19 2018-02-28 Kovalevsky, A.,Aggarwal, M.,Velazquez, H.,Cuneo, M.J.,Blakeley, M.P.,Weiss, K.L.,Smith, J.C.,Fisher, S.Z.,McKenna, R. ""To Be or Not to Be"" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation. Structure 2018 26 383 0 6BQ8 29517905 Joint X-ray/neutron structure of PKG II CNB-B domain in complex with 8-pCPT-cGMP 2017-11-27 2018-03-21 Gerlits, O.,Campbell, J.C.,Blakeley, M.P.,Kim, C.,Kovalevsky, A. Neutron Crystallography Detects Differences in Protein Dynamics: Structure of the PKG II Cyclic Nucleotide Binding Domain in Complex with an Activator. Biochemistry 2018 57 1833 1837 6BQ8 29517905 Joint X-ray/neutron structure of PKG II CNB-B domain in complex with 8-pCPT-cGMP 2017-11-27 2018-03-21 Gerlits, O.,Campbell, J.C.,Blakeley, M.P.,Kim, C.,Kovalevsky, A. 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Zooming in on protons: Neutron structure of protein kinase A trapped in a product complex. Sci Adv 2019 5 0 0 6GTJ 31316819 Neutron crystal structure for copper nitrite reductase from Achromobacter Cycloclastes at 1.8 A resolution 2018-06-18 2019-07-03 Halsted, T.P.,Yamashita, K.,Gopalasingam, C.C.,Shenoy, R.T.,Hirata, K.,Ago, H.,Ueno, G.,Blakeley, M.P.,Eady, R.R.,Antonyuk, S.V.,Yamamoto, M.,Hasnain, S.S. Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. Iucrj 2019 6 761 772 6TAE 32152099 Neutron structure of ferric ascorbate peroxidase 2019-10-29 2020-03-18 Kwon, H.,Basran, J.,Devos, J.M.,Suardiaz, R.,van der Kamp, M.W.,Mulholland, A.J.,Schrader, T.E.,Ostermann, A.,Blakeley, M.P.,Moody, P.C.E.,Raven, E.L. Visualizing the protons in a metalloenzyme electron proton transfer pathway. 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Acs Omega 2020 5 11605 11617 6PTP 32478251 Joint X-ray/neutron structure of HIV-1 protease triple mutant (V32I,I47V,V82I) with tetrahedral intermediate mimic KVS-1 2019-07-16 2020-06-10 Kumar, M.,Mandal, K.,Blakeley, M.P.,Wymore, T.,Kent, S.B.H.,Louis, J.M.,Das, A.,Kovalevsky, A. Visualizing Tetrahedral Oxyanion Bound in HIV-1 Protease Using Neutrons: Implications for the Catalytic Mechanism and Drug Design. Acs Omega 2020 5 11605 11617 7A0L 33520242 Joint neutron/X-ray room temperature structure of perdeuterated Aspergillus flavus urate oxidase in complex with the 8-azaxanthine inhibitor and catalytic water bound in the peroxo hole 2020-08-09 2020-12-09 McGregor, L.,Foldes, T.,Bui, S.,Moulin, M.,Coquelle, N.,Blakeley, M.P.,Rosta, E.,Steiner, R.A. Joint neutron/X-ray crystal structure of a mechanistically relevant complex of perdeuterated urate oxidase and simulations provide insight into the hydration step of catalysis. Iucrj 2021 8 46 59 7A0L 33520242 Joint neutron/X-ray room temperature structure of perdeuterated Aspergillus flavus urate oxidase in complex with the 8-azaxanthine inhibitor and catalytic water bound in the peroxo hole 2020-08-09 2020-12-09 McGregor, L.,Foldes, T.,Bui, S.,Moulin, M.,Coquelle, N.,Blakeley, M.P.,Rosta, E.,Steiner, R.A. Joint neutron/X-ray crystal structure of a mechanistically relevant complex of perdeuterated urate oxidase and simulations provide insight into the hydration step of catalysis. Iucrj 2021 8 46 59 7BBI 33765407 Joint X-ray/neutron room temperature structure of H/D-exchanged PLL lectin 2020-12-17 2021-03-17 Gajdos, L.,Blakeley, M.P.,Kumar, A.,Wimmerova, M.,Haertlein, M.,Forsyth, V.T.,Imberty, A.,Devos, J.M. Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions. Structure 2021 29 1003 0 7BBI 33765407 Joint X-ray/neutron room temperature structure of H/D-exchanged PLL lectin 2020-12-17 2021-03-17 Gajdos, L.,Blakeley, M.P.,Kumar, A.,Wimmerova, M.,Haertlein, M.,Forsyth, V.T.,Imberty, A.,Devos, J.M. Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions. Structure 2021 29 1003 0 7BBC 33765407 Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose 2020-12-17 2021-03-24 Gajdos, L.,Blakeley, M.P.,Kumar, A.,Wimmerova, M.,Haertlein, M.,Forsyth, V.T.,Imberty, A.,Devos, J.M. Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions. Structure 2021 29 1003 0 7BBC 33765407 Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose 2020-12-17 2021-03-24 Gajdos, L.,Blakeley, M.P.,Kumar, A.,Wimmerova, M.,Haertlein, M.,Forsyth, V.T.,Imberty, A.,Devos, J.M. Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions. Structure 2021 29 1003 0 7AZ3 34258011 Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. Iucrj 2021 8 633 643 7AZ3 34258011 Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. Iucrj 2021 8 633 643 7AZ4 34258011 Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. Iucrj 2021 8 633 643 7AZ4 34258011 Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. Iucrj 2021 8 633 643 7AZ9 34258011 Perdeuterated E65Q-TIM complexed with PHOSPHOGLYCOLOHYDROXAMATE 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. Iucrj 2021 8 633 643 7AZ9 34258011 Perdeuterated E65Q-TIM complexed with PHOSPHOGLYCOLOHYDROXAMATE 2020-11-16 2021-07-28 Kelpsas, V.,Caldararu, O.,Blakeley, M.P.,Coquelle, N.,Wierenga, R.K.,Ryde, U.,von Wachenfeldt, C.,Oksanen, E. Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. 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