PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 4BD1 23255594 Neutron structure of a perdeuterated Toho-1 R274N R276N double mutant Beta-lactamase in complex with a fully deuterated boronic acid (BZB) 2012-10-04 2013-01-16 Tomanicek, S.J.,Standaert, R.F.,Weiss, K.L.,Ostermann, A.,Schrader, T.E.,Ng, J.D.,Coates, L. Neutron and X-Ray Crystal Structures of a Perdeuterated Enzyme Inhibitor Complex Reveal the Catalytic Proton Network of the Toho-1 Beta-Lactamase for the Acylation Reaction. J.Biol.Chem. 2013 288 4715 0 4C3Q Neutron structure of a perdeuterated Toho-1 R274N R276N double mutant Beta-lactamase in complex with a fully deuterated boronic acid (BZB) at 100K 2013-08-26 2014-07-09 Coates, L.,Tomanicek, S.J.,Schrader, T.,Weiss, K.L.,Ng, J.D.,Ostermann, A. Cryogenic Neutron Protein Crystallography: Routine Methods and Potential Benefits J.Appl.Crystallogr. 2014 47 0 0 4CVJ 25013070 Neutron Structure of Compound I intermediate of Cytochrome c Peroxidase - Deuterium exchanged 100 K 2014-03-27 2014-07-16 Casadei, C.M.,Gumiero, A.,Metcalfe, C.L.,Murphy, E.J.,Basran, J.,Concilio, M.G.,Teixeira, S.C.M.,Schrader, T.E.,Fielding, A.J.,Ostermann, A.,Blakeley, M.P.,Raven, E.L.,Moody, P.C.E. Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase Science 2014 345 193 0 4CVJ 25013070 Neutron Structure of Compound I intermediate of Cytochrome c Peroxidase - Deuterium exchanged 100 K 2014-03-27 2014-07-16 Casadei, C.M.,Gumiero, A.,Metcalfe, C.L.,Murphy, E.J.,Basran, J.,Concilio, M.G.,Teixeira, S.C.M.,Schrader, T.E.,Fielding, A.J.,Ostermann, A.,Blakeley, M.P.,Raven, E.L.,Moody, P.C.E. Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase Science 2014 345 193 0 4Q49 25902526 Room temperature neutron crystal structure of apo human carbonic anhydrase at pH 7.5 2014-04-14 2015-02-25 Michalczyk, R.,Unkefer, C.J.,Bacik, J.P.,Schrader, T.E.,Ostermann, A.,Kovalevsky, A.Y.,McKenna, R.,Fisher, S.Z. Joint neutron crystallographic and NMR solution studies of Tyr residue ionization and hydrogen bonding: Implications for enzyme-mediated proton transfer. Proc.Natl.Acad.Sci.USA 2015 112 5673 5678 5DPN 26451738 Engineered CBM X-2 L110F in complex with branched carbohydrate XXXG. 2015-09-13 2015-10-28 Fisher, S.Z.,von Schantz, L.,Hakansson, M.,Logan, D.T.,Ohlin, M. Neutron Crystallographic Studies Reveal Hydrogen Bond and Water-Mediated Interactions between a Carbohydrate-Binding Module and Its Bound Carbohydrate Ligand. Biochemistry 2015 54 6435 6438 5DPN 26451738 Engineered CBM X-2 L110F in complex with branched carbohydrate XXXG. 2015-09-13 2015-10-28 Fisher, S.Z.,von Schantz, L.,Hakansson, M.,Logan, D.T.,Ohlin, M. Neutron Crystallographic Studies Reveal Hydrogen Bond and Water-Mediated Interactions between a Carbohydrate-Binding Module and Its Bound Carbohydrate Ligand. Biochemistry 2015 54 6435 6438 5A90 26630115 100K Neutron Ligand Free: Exploring the Mechanism of beta-Lactam Ring Protonation in the Class A beta-lactamase Acylation Mechanism Using Neutron and X-ray Crystallography 2015-07-17 2015-12-16 Vandavasi, V.G.,Weiss, K.L.,Cooper, J.B.,Erskine, P.T.,Tomanicek, S.J.,Ostermann, A.,Schrader, T.E.,Ginell, S.L.,Coates, L. Exploring the Mechanism of Beta-Lactam Ring Protonation in the Class a Beta-Lactamase Acylation Mechanism Using Neutron and X-Ray Crystallography. J.Med.Chem. 2016 59 474 0 5MNX 28371253 Neutron structure of cationic trypsin in complex with 2-aminopyridine 2016-12-13 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MNY 28371253 Neutron structure of cationic trypsin in complex with aniline 2016-12-13 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MON 28371253 Joint X-ray/neutron structure of cationic trypsin in complex with 2-aminopyridine 2016-12-14 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MON 28371253 Joint X-ray/neutron structure of cationic trypsin in complex with 2-aminopyridine 2016-12-14 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MOO 28371253 Joint X-ray/neutron structure of cationic trypsin in complex with aniline 2016-12-14 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MOO 28371253 Joint X-ray/neutron structure of cationic trypsin in complex with aniline 2016-12-14 2017-05-24 Schiebel, J.,Gaspari, R.,Sandner, A.,Ngo, K.,Gerber, H.D.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. Angew. Chem. Int. Ed. Engl. 2017 56 4887 4890 5MNZ 30177695 Neutron structure of cationic trypsin in its apo form 2016-12-13 2018-01-17 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOP 30177695 Joint X-ray/neutron structure of cationic trypsin in its apo form 2016-12-14 2018-01-17 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOP 30177695 Joint X-ray/neutron structure of cationic trypsin in its apo form 2016-12-14 2018-01-17 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MO0 30177695 Neutron structure of cationic trypsin in complex with benzamidine 2016-12-13 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MO1 Neutron structure of cationic trypsin in complex with benzylamine 2016-12-13 2018-02-28 Schiebel, J.,Heine, A.,Klebe, G. Neutron structure of cationic trypsin in complex with benzylamine to be published 0 0 0 0 5MO2 30177695 Neutron structure of cationic trypsin in complex with N-amidinopiperidine 2016-12-13 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOQ 30177695 Joint X-ray/neutron structure of cationic trypsin in complex with benzamidine 2016-12-14 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOQ 30177695 Joint X-ray/neutron structure of cationic trypsin in complex with benzamidine 2016-12-14 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOR Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine 2016-12-14 2018-02-28 Schiebel, J.,Heine, A.,Klebe, G. Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine to be published 0 0 0 0 5MOR Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine 2016-12-14 2018-02-28 Schiebel, J.,Heine, A.,Klebe, G. Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine to be published 0 0 0 0 5MOS 30177695 Joint X-ray/neutron structure of cationic trypsin in complex with N-amidinopiperidine 2016-12-14 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5MOS 30177695 Joint X-ray/neutron structure of cationic trypsin in complex with N-amidinopiperidine 2016-12-14 2018-02-28 Schiebel, J.,Gaspari, R.,Wulsdorf, T.,Ngo, K.,Sohn, C.,Schrader, T.E.,Cavalli, A.,Ostermann, A.,Heine, A.,Klebe, G. Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes. Nat Commun 2018 9 3559 3559 5ZN0 30359582 Joint X-ray/neutron structure of protein kinase ck2 alpha subunit 2018-04-07 2018-11-21 Shibazaki, C.,Arai, S.,Shimizu, R.,Saeki, M.,Kinoshita, T.,Ostermann, A.,Schrader, T.E.,Kurosaki, Y.,Sunami, T.,Kuroki, R.,Adachi, M. Hydration Structures of the Human Protein Kinase CK2 alpha Clarified by Joint Neutron and X-ray Crystallography. J. Mol. Biol. 2018 430 5094 5104 5ZN0 30359582 Joint X-ray/neutron structure of protein kinase ck2 alpha subunit 2018-04-07 2018-11-21 Shibazaki, C.,Arai, S.,Shimizu, R.,Saeki, M.,Kinoshita, T.,Ostermann, A.,Schrader, T.E.,Kurosaki, Y.,Sunami, T.,Kuroki, R.,Adachi, M. Hydration Structures of the Human Protein Kinase CK2 alpha Clarified by Joint Neutron and X-ray Crystallography. J. Mol. Biol. 2018 430 5094 5104 6H1M 30511668 Neutron structure of Lactobacillus brevis alcohol dehydrogenase 2018-07-12 2018-12-12 Hermann, J.,Nowotny, P.,Schrader, T.E.,Biggel, P.,Hekmat, D.,Weuster-Botz, D. Neutron and X-ray crystal structures of Lactobacillus brevis alcohol dehydrogenase reveal new insights into hydrogen-bonding pathways. Acta Crystallogr F Struct Biol 2018 74 754 764 5NFE 30804345 Neutron structure of human transthyretin (TTR) T119M mutant at room temperature to 1.85A resolution 2017-03-14 2019-01-02 Yee, A.W.,Aldeghi, M.,Blakeley, M.P.,Ostermann, A.,Mas, P.J.,Moulin, M.,de Sanctis, D.,Bowler, M.W.,Mueller-Dieckmann, C.,Mitchell, E.P.,Haertlein, M.,de Groot, B.L.,Boeri Erba, E.,Forsyth, V.T. A molecular mechanism for transthyretin amyloidogenesis. Nat Commun 2019 10 925 925 5NFE 30804345 Neutron structure of human transthyretin (TTR) T119M mutant at room temperature to 1.85A resolution 2017-03-14 2019-01-02 Yee, A.W.,Aldeghi, M.,Blakeley, M.P.,Ostermann, A.,Mas, P.J.,Moulin, M.,de Sanctis, D.,Bowler, M.W.,Mueller-Dieckmann, C.,Mitchell, E.P.,Haertlein, M.,de Groot, B.L.,Boeri Erba, E.,Forsyth, V.T. A molecular mechanism for transthyretin amyloidogenesis. Nat Commun 2019 10 925 925 6FJJ 30639924 Joint neutron and x-ray crystal structure of human carbonic anhydrase IX mimic (saccharin). 2018-01-22 2019-02-06 Koruza, K.,Mahon, B.P.,Blakeley, M.P.,Ostermann, A.,Schrader, T.E.,McKenna, R.,Knecht, W.,Fisher, S.Z. Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative. J. Struct. Biol. 2019 205 147 154 6FJJ 30639924 Joint neutron and x-ray crystal structure of human carbonic anhydrase IX mimic (saccharin). 2018-01-22 2019-02-06 Koruza, K.,Mahon, B.P.,Blakeley, M.P.,Ostermann, A.,Schrader, T.E.,McKenna, R.,Knecht, W.,Fisher, S.Z. Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative. J. Struct. Biol. 2019 205 147 154 6GCY 30639924 Joint neutron and x-ray crystal structure of human carbonic anhydrase IX mimic (saccharin-sugar conjugate complex) 2018-04-20 2019-02-06 Koruza, K.,Mahon, B.P.,Blakeley, M.P.,Ostermann, A.,Schrader, T.E.,McKenna, R.,Knecht, W.,Fisher, S.Z. Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative. J. Struct. Biol. 2019 205 147 154 6GCY 30639924 Joint neutron and x-ray crystal structure of human carbonic anhydrase IX mimic (saccharin-sugar conjugate complex) 2018-04-20 2019-02-06 Koruza, K.,Mahon, B.P.,Blakeley, M.P.,Ostermann, A.,Schrader, T.E.,McKenna, R.,Knecht, W.,Fisher, S.Z. Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative. J. Struct. Biol. 2019 205 147 154 5ZO0 Neutron structure of xylanase at pD5.4 2018-04-12 2019-05-15 Wan, Q.,Li, Z.H. Neutron structure of xylanase at pD5.4 To be published 0 0 0 0 6AJZ 30565859 Joint nentron and X-ray structure of BRD4 in complex with colchicin 2018-08-28 2019-06-12 Yokoyama, T.,Matsumoto, K.,Ostermann, A.,Schrader, T.E.,Nabeshima, Y.,Mizuguchi, M. Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4. Febs J. 2019 286 1656 1667 6AJZ 30565859 Joint nentron and X-ray structure of BRD4 in complex with colchicin 2018-08-28 2019-06-12 Yokoyama, T.,Matsumoto, K.,Ostermann, A.,Schrader, T.E.,Nabeshima, Y.,Mizuguchi, M. Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4. Febs J. 2019 286 1656 1667 6XV4 32152099 Neutron structure of ferric ascorbate peroxidase-ascorbate complex 2020-01-21 2020-03-18 Kwon, H.,Basran, J.,Devos, J.M.,Suardiaz, R.,van der Kamp, M.W.,Mulholland, A.J.,Schrader, T.E.,Ostermann, A.,Blakeley, M.P.,Moody, P.C.E.,Raven, E.L. Visualizing the protons in a metalloenzyme electron proton transfer pathway. Proc.Natl.Acad.Sci.USA 2020 117 6484 6490 6XV4 32152099 Neutron structure of ferric ascorbate peroxidase-ascorbate complex 2020-01-21 2020-03-18 Kwon, H.,Basran, J.,Devos, J.M.,Suardiaz, R.,van der Kamp, M.W.,Mulholland, A.J.,Schrader, T.E.,Ostermann, A.,Blakeley, M.P.,Moody, P.C.E.,Raven, E.L. Visualizing the protons in a metalloenzyme electron proton transfer pathway. Proc.Natl.Acad.Sci.USA 2020 117 6484 6490 6L26 31880458 Neutron crystal structure of the mutant green fluorescent protein (EGFP) 2019-10-02 2020-04-08 Shibazaki, C.,Shimizu, R.,Kagotani, Y.,Ostermann, A.,Schrader, T.E.,Adachi, M. Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein. J Phys Chem Lett 2020 11 492 496 7F4X Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP 2021-06-21 2022-06-29 Yokoyama, T.,Fujii, S.,Ostermann, A.,Schrader, T.E.,Nabeshima, Y.,Mizuguchi, M. Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP. Iucrj 2022 9 562 572 7F4X Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP 2021-06-21 2022-06-29 Yokoyama, T.,Fujii, S.,Ostermann, A.,Schrader, T.E.,Nabeshima, Y.,Mizuguchi, M. Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP. Iucrj 2022 9 562 572 7YK9 36463961 Neutron Structure of PcyA I86D Mutant Complexed with Biliverdin at Room Temperature 2022-07-22 2023-01-25 Joutsuka, T.,Nanasawa, R.,Igarashi, K.,Horie, K.,Sugishima, M.,Hagiwara, Y.,Wada, K.,Fukuyama, K.,Yano, N.,Mori, S.,Ostermann, A.,Kusaka, K.,Unno, M. Neutron crystallography and quantum chemical analysis of bilin reductase PcyA mutants reveal substrate and catalytic residue protonation states. J.Biol.Chem. 2022 299 102763 102763 7YK9 36463961 Neutron Structure of PcyA I86D Mutant Complexed with Biliverdin at Room Temperature 2022-07-22 2023-01-25 Joutsuka, T.,Nanasawa, R.,Igarashi, K.,Horie, K.,Sugishima, M.,Hagiwara, Y.,Wada, K.,Fukuyama, K.,Yano, N.,Mori, S.,Ostermann, A.,Kusaka, K.,Unno, M. Neutron crystallography and quantum chemical analysis of bilin reductase PcyA mutants reveal substrate and catalytic residue protonation states. J.Biol.Chem. 2022 299 102763 102763 8RK1 38489389 Crystal structure of FutA bound to Fe(III) solved by neutron diffraction 2023-12-22 2024-01-17 Bolton, R.,Machelett, M.M.,Stubbs, J.,Axford, D.,Caramello, N.,Catapano, L.,Maly, M.,Rodrigues, M.J.,Cordery, C.,Tizzard, G.J.,MacMillan, F.,Engilberge, S.,von Stetten, D.,Tosha, T.,Sugimoto, H.,Worrall, J.A.R.,Webb, J.S.,Zubkov, M.,Coles, S.,Mathieu, E.,Steiner, R.A.,Murshudov, G.,Schrader, T.E.,Orville, A.M.,Royant, A.,Evans, G.,Hough, M.A.,Owen, R.L.,Tews, I. A redox switch allows binding of Fe(II) and Fe(III) ions in the cyanobacterial iron-binding protein FutA from Prochlorococcus. Proc.Natl.Acad.Sci.USA 2024 121 0 0