PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 3VEC 22308037 Rhodococcus jostii RHA1 DypB D153A variant in complex with heme 2012-01-07 2012-01-18 Singh, R.,Grigg, J.C.,Armstrong, Z.,Murphy, M.E.,Eltis, L.D. Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity. J.Biol.Chem. 2012 287 10623 10630 3VED 22308037 Rhodococcus jostii RHA1 DypB D153H variant in complex with heme 2012-01-07 2012-01-18 Singh, R.,Grigg, J.C.,Armstrong, Z.,Murphy, M.E.,Eltis, L.D. Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity. J.Biol.Chem. 2012 287 10623 10630 3VEE 22308037 Rhodococcus jostii RHA1 DypB N246A variant in complex with heme 2012-01-07 2012-01-18 Singh, R.,Grigg, J.C.,Armstrong, Z.,Murphy, M.E.,Eltis, L.D. Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity. J.Biol.Chem. 2012 287 10623 10630 3VEF 22308037 Rhodococcus jostii RHA1 DypB N246H variant in complex with heme 2012-01-07 2012-01-18 Singh, R.,Grigg, J.C.,Armstrong, Z.,Murphy, M.E.,Eltis, L.D. Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity. J.Biol.Chem. 2012 287 10623 10630 3VEG 22308037 Rhodococcus jostii RHA1 DypB R244L variant in complex with heme 2012-01-07 2012-01-18 Singh, R.,Grigg, J.C.,Armstrong, Z.,Murphy, M.E.,Eltis, L.D. Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity. J.Biol.Chem. 2012 287 10623 10630 3UKK 22334662 Crystal structure of R182K-UDP-galactopuranose mutase from Aspergillus fumigatus in complex with UDPgalp 2011-11-09 2012-02-22 van Straaten, K.E.,Routier, F.H.,Sanders, D.A. Structural Insight into the Unique Substrate Binding Mechanism and Flavin Redox State of UDP-galactopyranose Mutase from Aspergillus fumigatus. J.Biol.Chem. 2012 287 10780 10790 3UKL 22334662 Crystal structure of UDP-galactopyranose mutase from Aspergillus fumigatus in complex with UDP 2011-11-09 2012-02-22 van Straaten, K.E.,Routier, F.H.,Sanders, D.A. Structural Insight into the Unique Substrate Binding Mechanism and Flavin Redox State of UDP-galactopyranose Mutase from Aspergillus fumigatus. J.Biol.Chem. 2012 287 10780 10790 3UKP 22334662 Crystal structure of R327A UDP-galactopyranose mutase from Aspergillus fumigatus in complex with UDPgalp 2011-11-09 2012-02-22 van Straaten, K.E.,Routier, F.H.,Sanders, D.A. Structural Insight into the Unique Substrate Binding Mechanism and Flavin Redox State of UDP-galactopyranose Mutase from Aspergillus fumigatus. J.Biol.Chem. 2012 287 10780 10790 3UKQ 22334662 Crystal structure of R327K UDP-galactopyranose mutase from Aspergillus fumigatus in complex with UDPgalp 2011-11-09 2012-02-22 van Straaten, K.E.,Routier, F.H.,Sanders, D.A. Structural Insight into the Unique Substrate Binding Mechanism and Flavin Redox State of UDP-galactopyranose Mutase from Aspergillus fumigatus. J.Biol.Chem. 2012 287 10780 10790 4DID 22362774 Crystal structure of Salmonella effector N-terminal domain SopB in complex with Cdc42 2012-01-30 2012-02-29 Burkinshaw, B.J.,Prehna, G.,Worrall, L.J.,Strynadka, N.C. Structure of Salmonella Effector Protein SopB N-terminal Domain in Complex with Host Rho GTPase Cdc42. J.Biol.Chem. 2012 287 13348 13355 4G0X 22850669 Crystal Structure of Arabidopsis thaliana AGO1 MID domain 2012-07-10 2012-07-25 Frank, F.,Hauver, J.,Sonenberg, N.,Nagar, B. Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs. Embo J. 2012 31 3588 3595 4EXY 22713171 Crystal structure of NDM-1 bound to ethylene glycol 2012-05-01 2012-08-08 King, D.T.,Worrall, L.J.,Gruninger, R.,Strynadka, N.C. New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition J.Am.Chem.Soc. 2012 134 11362 11365 4EY2 22713171 Crystal structure of NDM-1 bound to hydrolyzed methicillin 2012-05-01 2012-08-08 King, D.T.,Worrall, L.J.,Gruninger, R.,Strynadka, N.C. New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition J.Am.Chem.Soc. 2012 134 11362 11365 4EYF 22713171 Crystal structure of NDM-1 bound to hydrolyzed benzylpenicillin 2012-05-01 2012-08-08 King, D.T.,Worrall, L.J.,Gruninger, R.,Strynadka, N.C. 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Crystal structure of methyltransferase domain of human RNA (guanine-9-) methyltransferase domain containing protein 2 TO BE PUBLISHED 0 0 0 0 3USF Crystal structure of DAVA-4 2011-11-23 2012-12-05 Stetefeld, J. Crystal structure of DAVA-4 To be Published 0 0 0 0 3U41 Crystal structure of Escherichia coli DmsD in space group P212121 2011-10-06 2013-02-06 0 0 0 0 4GJE 23633581 Crystal structure of the refolded amino-terminal domain of human cardiac troponin C in complex with cadmium 2012-08-09 2013-02-06 Zhang, X.L.,Tibbits, G.F.,Paetzel, M. The structure of cardiac troponin C regulatory domain with bound Cd(2+) reveals a closed conformation and unique ion coordination. Acta Crystallogr.,Sect.D 2013 69 722 734 4FGJ Oxidized quinone reductase 2 in complex with primaquine 2012-06-04 2013-03-13 Leung, K.K.,Shilton, B.H. Crystal structures of quinone reductase 2 bound to antimalarial drugs reveal conformational change upon reduction J.Biol.Chem. 2013 0 0 0 4FGK Oxidized quinone reductase 2 in complex with chloroquine 2012-06-04 2013-03-13 Leung, K.K.,Shilton, B.H. Crystal structures of quinone reductase 2 bound to antimalarial drugs reveal conformational change upon reduction J.Biol.Chem. 2013 0 0 0 4DUW 23486479 E. coli (lacZ) beta-galactosidase (G974A) in complex with allolactose 2012-02-22 2013-03-20 Wheatley, R.W.,Lo, S.,Jancewicz, L.J.,Dugdale, M.L.,Huber, R.E. Structural Explanation for Allolactose (lac operon inducer) Synthesis by lacZ beta-Galactosidase and the Evolutionary Relationship between Allolactose synthesis and the lac Repressor J.Biol.Chem. 2013 288 12993 13005 4DUX 23486479 E. coli (lacZ) beta-galactosidase (N460S) in complex with L-ribose 2012-02-22 2013-03-20 Wheatley, R.W.,Lo, S.,Jancewicz, L.J.,Dugdale, M.L.,Huber, R.E. Structural explanation for allolactose (lac operon inducer) synthesis by lacZ beta-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor. J.Biol.Chem. 2013 288 12993 13005 4DUV E. coli (lacZ) beta-galactosidase (G974A) 2-deoxy-galactosyl-enzyme and bis-Tris complex 2012-02-22 2013-04-03 Wheatley, R.W.,Lo, S.,Janzcewicz, L.J.,Dugdale, M.L.,Huber, R.E. The Glucose Acceptor site of lacZ beta-galactosidase for the synthesis of allolactose - the natural inducer of the lac operon To be Published 0 0 0 0 4J94 23620593 Crystal structure of MycP1 from the ESX-1 type VII secretion system 2013-02-15 2013-05-01 Solomonson, M.,Huesgen, P.F.,Wasney, G.A.,Watanabe, N.,Gruninger, R.J.,Prehna, G.,Overall, C.M.,Strynadka, N.C. Structure of the Mycosin-1 Protease from the Mycobacterial ESX-1 Protein Type VII Secretion System. 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The structure of cyanophycinase in complex with a cyanophycin degradation intermediate. Biochim Biophys Acta Gen Subj 2022 1866 130217 130217 8DI0 36112631 Bfo2290: Tannerella forsythia chondroitin sulfate A sulfatase 2022-06-28 2022-08-17 Nguyen, P.,Eshaque, R.,Garland, B.A.,Dang, A.,Suits, M.D.L. Degradation of chondroitin sulfate A by a PUL-like operon in Tannerella forsythia. Plos One 2022 17 0 0 7UTF 36042239 Structure-Function characterization of an aldo-keto reductase involved in detoxification of the mycotoxin, deoxynivalenol 2022-04-26 2022-09-07 Abraham, N.,Schroeter, K.L.,Zhu, Y.,Chan, J.,Evans, N.,Kimber, M.S.,Carere, J.,Zhou, T.,Seah, S.Y.K. Structure-function characterization of an aldo-keto reductase involved in detoxification of the mycotoxin, deoxynivalenol. Sci Rep 2022 12 14737 14737 8DRU 36057636 Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp7-nsp8 (C7) cut site sequence 2022-07-21 2022-09-21 Lee, J.,Kenward, C.,Worrall, L.J.,Vuckovic, M.,Gentile, F.,Ton, A.T.,Ng, M.,Cherkasov, A.,Strynadka, N.C.J.,Paetzel, M. X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation. Nat Commun 2022 13 5196 5196 8DRX 36057636 Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp10-nsp11 (C10) cut site sequence (form 2) 2022-07-21 2022-09-21 Lee, J.,Kenward, C.,Worrall, L.J.,Vuckovic, M.,Gentile, F.,Ton, A.T.,Ng, M.,Cherkasov, A.,Strynadka, N.C.J.,Paetzel, M. X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation. Nat Commun 2022 13 5196 5196 8DS1 36057636 Structure of SARS-CoV-2 Mpro in complex with nsp12-nsp13 (C12) cut site sequence 2022-07-21 2022-09-28 Lee, J.,Kenward, C.,Worrall, L.J.,Vuckovic, M.,Gentile, F.,Ton, A.T.,Ng, M.,Cherkasov, A.,Strynadka, N.C.J.,Paetzel, M. X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation. Nat Commun 2022 13 5196 5196 8EGN Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with ligand AZ-13643701 2022-09-12 2022-09-28 Abendroth, J.,Dranow, D.M.,Hill, P.,Horanyi, P.S.,Lorimer, D.D.,Edwards, T.E. Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with ligand AZ-13643701 to be published 0 0 0 0 7SZ2 36288691 Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ATP 2021-11-25 2022-10-05 Kuttiyatveetil, J.R.A.,Soufari, H.,Dasovich, M.,Uribe, I.R.,Mirhasan, M.,Cheng, S.J.,Leung, A.K.L.,Pascal, J.M. Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose). Cell Rep 2022 41 111529 111529 7SZ3 36288691 Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ADPr 2021-11-25 2022-10-05 Kuttiyatveetil, J.R.A.,Soufari, H.,Dasovich, M.,Uribe, I.R.,Mirhasan, M.,Cheng, S.J.,Leung, A.K.L.,Pascal, J.M. Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose). Cell Rep 2022 41 111529 111529 7UO3 36183829 Co-crystal structure of Salmonella Typhimurium Tlde1a in complex with D-alanine 2022-04-12 2022-11-02 Lorente Cobo, N.,Sibinelli-Sousa, S.,Biboy, J.,Vollmer, W.,Bayer-Santos, E.,Prehna, G. Molecular characterization of the type VI secretion system effector Tlde1a reveals a structurally altered LD-transpeptidase fold. J.Biol.Chem. 2022 298 102556 102556 7UO8 36183829 Co-crystal structure of Salmonella Typhimurium Tlde1a in complex with D-methionine 2022-04-12 2022-11-02 Lorente Cobo, N.,Sibinelli-Sousa, S.,Biboy, J.,Vollmer, W.,Bayer-Santos, E.,Prehna, G. Molecular characterization of the type VI secretion system effector Tlde1a reveals a structurally altered LD-transpeptidase fold. J.Biol.Chem. 2022 298 102556 102556 8CSC 36271007 WbbB D232N-Kdo adduct 2022-05-12 2022-11-09 Forrester, T.J.B.,Ovchinnikova, O.G.,Li, Z.,Kitova, E.N.,Nothof, J.T.,Koizumi, A.,Klassen, J.S.,Lowary, T.L.,Whitfield, C.,Kimber, M.S. The retaining beta-Kdo glycosyltransferase WbbB uses a double-displacement mechanism with an intermediate adduct rearrangement step. Nat Commun 2022 13 6277 6277 8CSE 36271007 WbbB in complex with alpha-Rha-(1-3)-beta-GlcNAc acceptor 2022-05-12 2022-11-09 Forrester, T.J.B.,Ovchinnikova, O.G.,Li, Z.,Kitova, E.N.,Nothof, J.T.,Koizumi, A.,Klassen, J.S.,Lowary, T.L.,Whitfield, C.,Kimber, M.S. The retaining beta-Kdo glycosyltransferase WbbB uses a double-displacement mechanism with an intermediate adduct rearrangement step. Nat Commun 2022 13 6277 6277 8CSF 36271007 WbbB D232C-Kdo adduct + alpha-Rha(1,3)GlcNAc ternary complex 2022-05-12 2022-11-09 Forrester, T.J.B.,Ovchinnikova, O.G.,Li, Z.,Kitova, E.N.,Nothof, J.T.,Koizumi, A.,Klassen, J.S.,Lowary, T.L.,Whitfield, C.,Kimber, M.S. The retaining beta-Kdo glycosyltransferase WbbB uses a double-displacement mechanism with an intermediate adduct rearrangement step. Nat Commun 2022 13 6277 6277 7ULA 36494359 Structure of the Pseudomonas putida AlgKX modification and secretion complex 2022-04-04 2022-12-14 Gheorghita, A.A.,Li, Y.E.,Kitova, E.N.,Bui, D.T.,Pfoh, R.,Low, K.E.,Whitfield, G.B.,Walvoort, M.T.C.,Zhang, Q.,Codee, J.D.C.,Klassen, J.S.,Howell, P.L. Structure of the AlgKX modification and secretion complex required for alginate production and biofilm attachment in Pseudomonas aeruginosa. Nat Commun 2022 13 7631 7631 7TAM HRas G12V in complex with GDP 2021-12-21 2022-12-28 Kouidmi, I.,Maddalena, M.,Laplante, S. Structure of HRas G12V in complex with GDP To Be Published 0 0 0 0 7UVM 36586405 Crystal structure of human ClpP protease in complex with TR-27 2022-05-02 2023-01-11 Mabanglo, M.F.,Wong, K.S.,Barghash, M.M.,Leung, E.,Chuang, S.H.W.,Ardalan, A.,Majaesic, E.M.,Wong, C.J.,Zhang, S.,Lang, H.,Karanewsky, D.S.,Iwanowicz, A.A.,Graves, L.M.,Iwanowicz, E.J.,Gingras, A.C.,Houry, W.A. Potent ClpP agonists with anticancer properties bind with improved structural complementarity and alter the mitochondrial N-terminome. Structure 2023 31 185 0 7UVN 36586405 Crystal structure of human ClpP protease in complex with TR-57 2022-05-02 2023-01-11 Mabanglo, M.F.,Wong, K.S.,Barghash, M.M.,Leung, E.,Chuang, S.H.W.,Ardalan, A.,Majaesic, E.M.,Wong, C.J.,Zhang, S.,Lang, H.,Karanewsky, D.S.,Iwanowicz, A.A.,Graves, L.M.,Iwanowicz, E.J.,Gingras, A.C.,Houry, W.A. Potent ClpP agonists with anticancer properties bind with improved structural complementarity and alter the mitochondrial N-terminome. Structure 2023 31 185 0 7UVR 36586405 Crystal structure of human ClpP protease in complex with TR-65 2022-05-02 2023-01-11 Mabanglo, M.F.,Wong, K.S.,Barghash, M.M.,Leung, E.,Chuang, S.H.W.,Ardalan, A.,Majaesic, E.M.,Wong, C.J.,Zhang, S.,Lang, H.,Karanewsky, D.S.,Iwanowicz, A.A.,Graves, L.M.,Iwanowicz, E.J.,Gingras, A.C.,Houry, W.A. Potent ClpP agonists with anticancer properties bind with improved structural complementarity and alter the mitochondrial N-terminome. Structure 2023 31 185 0 7UVU 36586405 Crystal structure of human ClpP protease in complex with TR-107 2022-05-02 2023-01-11 Mabanglo, M.F.,Wong, K.S.,Barghash, M.M.,Leung, E.,Chuang, S.H.W.,Ardalan, A.,Majaesic, E.M.,Wong, C.J.,Zhang, S.,Lang, H.,Karanewsky, D.S.,Iwanowicz, A.A.,Graves, L.M.,Iwanowicz, E.J.,Gingras, A.C.,Houry, W.A. Potent ClpP agonists with anticancer properties bind with improved structural complementarity and alter the mitochondrial N-terminome. Structure 2023 31 185 0 7UW0 36586405 Crystal structure of human ClpP protease in complex with TR-133 2022-05-02 2023-01-11 Mabanglo, M.F.,Wong, K.S.,Barghash, M.M.,Leung, E.,Chuang, S.H.W.,Ardalan, A.,Majaesic, E.M.,Wong, C.J.,Zhang, S.,Lang, H.,Karanewsky, D.S.,Iwanowicz, A.A.,Graves, L.M.,Iwanowicz, E.J.,Gingras, A.C.,Houry, W.A. Potent ClpP agonists with anticancer properties bind with improved structural complementarity and alter the mitochondrial N-terminome. Structure 2023 31 185 0 7N4O Crystal structure of R20A human Galectin-7 mutant 2021-06-04 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R20A human Galectin-7 mutant To Be Published 0 0 0 0 7N6C Crystal structure of R22A human Galectin-7 mutant 2021-06-08 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R20A human Galectin-7 mutant To Be Published 0 0 0 0 7N8D Crystal structure of R22A human Galectin-7 mutant in presence of Lactose 2021-06-14 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R22A human Galectin-7 mutant in presence of Lactose To Be Published 0 0 0 0 7N8G Crystal structure of R20A-R22A human Galectin-7 mutant 2021-06-14 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R20A human Galectin-7 mutant To Be Published 0 0 0 0 7N96 Crystal structure of D103A human Galectin-7 mutant 2021-06-16 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of D103A human Galectin-7 mutant To Be Published 0 0 0 0 7RDG Crystal structure of D103A human Galectin-7 mutant in presence of lactose 2021-07-09 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of D103A human Galectin-7 mutant in presence of lactose To Be Published 0 0 0 0 7TKX Crystal structure of R14A human Galectin-7 mutant in presence of 4-O-beta-D-Galactopyranosyl-D-glucose 2022-01-17 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R14A human Galectin-7 mutant in presence of 4-O-beta-D-Galactopyranosyl-D-glucose To Be Published 0 0 0 0 7TKY Crystal structure of D94A human Galectin-7 mutant 2022-01-17 2023-01-25 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of D94A human Galectin-7 mutant To Be Published 0 0 0 0 7TRN Crystal structure of R14A-R20A human Galectin-7 mutant 2022-01-29 2023-02-01 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R14A-R20A human Galectin-7 mutant To Be Published 0 0 0 0 7TRO Crystal structure of R14A-R20A human Galectin-7 mutant in presence of lactose 2022-01-29 2023-02-01 Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of R14A-R20A human Galectin-7 mutant in presence of lactose To Be Published 0 0 0 0 8F16 Structure of the STUB1 TPR domain in complex with H203, an all-D Helicon Polypeptide 2022-11-04 2023-02-15 Callahan, A.J.,Gandhesiri, S.,Travaline, T.L.,Lozano Salazar, L,Hanna, S.,Lee, Y.-C.,Li, K.,Tokareva, O.S.,Swiecicki, J.-M.,Loas, A.,Verdine, G.L.,McGee, J.H.,Pentelute, B.L. Single-Shot Flow Synthesis of D-Proteins for Mirror-Image Phage Display Chemrxiv 2023 0 0 0 8F17 Structure of the STUB1 TPR domain in complex with H204, an all-D Helicon Polypeptide 2022-11-04 2023-02-15 Callahan, A.J.,Gandhesiri, S.,Travaline, T.L.,Lozano Salazar, L.,Hanna, S.,Lee, Y.-C.,Li, K.,Tokareva, O.S.,Swiecicki, J.-M.,Loas, A.,Verdine, G.L.,McGee, J.H.,Pentelute, B.L. Single-Shot Flow Synthesis of D-Proteins for Mirror-Image Phage Display Chemrxiv 2023 0 0 0 7UDI Full-length dimer of DNA-Damage Response Protein C from Deinococcus radiodurans 2022-03-19 2023-02-22 Szabla, R.,Li, M.C.,Junop, M.S. Full-length dimer of DNA-Damage Response Protein C from Deinococcus radiodurans To Be Published 0 0 0 0 8CT8 36822330 Crystal structure of Drosophila melanogaster PRL/CBS-pair domain complex 2022-05-13 2023-03-01 Fakih, R.,Goldstein, R.H.,Kozlov, G.,Gehring, K. Burst kinetics and CNNM binding are evolutionarily conserved properties of phosphatases of regenerating liver. J.Biol.Chem. 2023 299 103055 103055 8DJJ 37122453 Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates 2022-06-30 2023-04-26 Chen, S.A.,Arutyunova, E.,Lu, J.,Khan, M.B.,Rut, W.,Zmudzinski, M.,Shahbaz, S.,Iyyathurai, J.,Moussa, E.W.,Turner, Z.,Bai, B.,Lamer, T.,Nieman, J.A.,Vederas, J.C.,Julien, O.,Drag, M.,Elahi, S.,Young, H.S.,Lemieux, M.J. SARS-CoV-2 M pro Protease Variants of Concern Display Altered Viral Substrate and Cell Host Target Galectin-8 Processing but Retain Sensitivity toward Antivirals. Acs Cent.Sci. 2023 9 696 708 8DKZ 37122453 Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates 2022-07-06 2023-04-26 Chen, S.A.,Arutyunova, E.,Lu, J.,Khan, M.B.,Rut, W.,Zmudzinski, M.,Shahbaz, S.,Iyyathurai, J.,Moussa, E.W.,Turner, Z.,Bai, B.,Lamer, T.,Nieman, J.A.,Vederas, J.C.,Julien, O.,Drag, M.,Elahi, S.,Young, H.S.,Lemieux, M.J. SARS-CoV-2 M pro Protease Variants of Concern Display Altered Viral Substrate and Cell Host Target Galectin-8 Processing but Retain Sensitivity toward Antivirals. Acs Cent.Sci. 2023 9 696 708 8DQM 37221236 Crystal structure of isoaspartyl aminopeptidase from Roseivivax halodurans DSM 15395 2022-07-19 2023-04-26 Sharon, I.,Schmeing, T.M. Bioinformatics of cyanophycin metabolism genes and characterization of promiscuous isoaspartyl dipeptidases that catalyze the final step of cyanophycin degradation. Sci Rep 2023 13 8314 8314 7XQK The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus. 2022-05-07 2023-05-17 Gui, W.,Wang, F.,Cheng, W.,Gao, J.,Huang, Y. The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus. To Be Published 0 0 0 0 8DK8 37122453 Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates 2022-07-04 2023-05-17 Chen, S.A.,Arutyunova, E.,Lu, J.,Khan, M.B.,Rut, W.,Zmudzinski, M.,Shahbaz, S.,Iyyathurai, J.,Moussa, E.W.,Turner, Z.,Bai, B.,Lamer, T.,Nieman, J.A.,Vederas, J.C.,Julien, O.,Drag, M.,Elahi, S.,Young, H.S.,Lemieux, M.J. SARS-CoV-2 M pro Protease Variants of Concern Display Altered Viral Substrate and Cell Host Target Galectin-8 Processing but Retain Sensitivity toward Antivirals. Acs Cent.Sci. 2023 9 696 708 8FV6 37106216 E coli. CTP synthase in complex with dF-dCTP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8FV7 37106216 E coli. CTP synthase in complex with dF-dCTP + ATP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8FV8 37106216 E coli. CTP synthase in complex with dF-dCTP + ADP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8FV9 37106216 E coli. CTP synthase in complex with F-dCTP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8FVA 37106216 E coli. CTP synthase in complex with F-araCTP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8FVB 37106216 E coli. CTP synthase in complex with CTP 2023-01-18 2023-05-24 McLeod, M.J.,Tran, N.,McCluskey, G.D.,Gillis, T.D.,Bearne, S.L.,Holyoak, T. A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci. 2023 32 0 0 8D1Q 36275624 Crystal structure of Plasmodium falciparum GRP78-NBD in complex with 8-Aminoadenosine 2022-05-27 2023-05-31 Mrozek, A.,Antoshchenko, T.,Chen, Y.,Zepeda-Velazquez, C.,Smil, D.,Kumar, N.,Lu, H.,Park, H.W. A non-traditional crystal-based compound screening method targeting the ATP binding site of Plasmodium falciparum GRP78 for identification of novel nucleoside analogues. Front Mol Biosci 2022 9 956095 956095 8D1Y 36275624 Crystal structure of Plasmodium falciparum GRP78 in complex with Trans-Zeatin Riboside 2022-05-27 2023-05-31 Mrozek, A.,Antoshchenko, T.,Chen, Y.,Zepeda-Velazquez, C.,Smil, D.,Kumar, N.,Lu, H.,Park, H.W. A non-traditional crystal-based compound screening method targeting the ATP binding site of Plasmodium falciparum GRP78 for identification of novel nucleoside analogues. Front Mol Biosci 2022 9 956095 956095 8D20 36275624 Crystal structure of Plasmodium falciparum GRP78 in complex with 5'-Methylthioadenosine 2022-05-27 2023-05-31 Mrozek, A.,Antoshchenko, T.,Chen, Y.,Zepeda-Velazquez, C.,Smil, D.,Kumar, N.,Lu, H.,Park, H.W. A non-traditional crystal-based compound screening method targeting the ATP binding site of Plasmodium falciparum GRP78 for identification of novel nucleoside analogues. Front Mol Biosci 2022 9 956095 956095 8D22 36275624 Crystal structure of Plasmodium falciparum GRP78-NBD in complex with Piclidenoson 2022-05-27 2023-05-31 Mrozek, A.,Antoshchenko, T.,Chen, Y.,Zepeda-Velazquez, C.,Smil, D.,Kumar, N.,Lu, H.,Park, H.W. A non-traditional crystal-based compound screening method targeting the ATP binding site of Plasmodium falciparum GRP78 for identification of novel nucleoside analogues. Front Mol Biosci 2022 9 956095 956095 8E1U 37226637 Propionibacterium freudenreichii PPi-dependent PEPCK in complex with malate 2022-08-11 2023-06-07 McLeod, M.J.,Holyoak, T. Biochemical, structural, and kinetic characterization of PP i -dependent phosphoenolpyruvate carboxykinase from Propionibacterium freudenreichii. Proteins 2023 91 1261 1275 7Y1U Crystal structure of isocitrate dehydrogenase from Campylobacter corcagiensis 2022-06-08 2023-07-05 Bian, M.J.,Cheng, Q.P.,Wang, P.,Zhu, G.P. Crystal structure of isocitrate dehydrogenase from Campylobacter corcagiensis To Be Published 0 0 0 0 8G64 37302554 Heme-bound flavodoxin FldH from Fusobacterium nucleatum 2023-02-14 2023-08-09 McGregor, A.K.,Chan, A.C.K.,Schroeder, M.D.,Do, L.T.M.,Saini, G.,Murphy, M.E.P.,Wolthers, K.R. A new member of the flavodoxin superfamily from Fusobacterium nucleatum that functions in heme trafficking and reduction of anaerobilin. J.Biol.Chem. 2023 299 104902 104902 7TY1 Crystal structure of apo eosinophil cationic protein (ribonuclease 3) from Macaca fascicularis (MfECP) 2022-02-11 2023-08-16 Thi Thanh, Q.T.,Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of apo eosinophil cationic protein (ribonuclease 3) from Macaca fascicularis (MfECP) To Be Published 0 0 0 0 8CIJ 37531921 CRYSTAL STRUCTURE OF HUMAN HPK1 (MAP4K1) COMPLEX WITH 2-[8-Amino-7-fluoro-6-(8-methyl-2,3-dihydro-1H-pyrido[2,3-b][1,4]oxazin-7-yl)-isoquinolin-3-ylamino]-6-isopropyl-5,6-dihydro-4H-1,6,8a-triaza-azulen-7-one 2023-02-09 2023-08-16 Toure, M.,Johnson, T.,Li, B.,Schmidt, R.,Ma, H.,Neagu, C.,Lopez, A.U.,Wang, Y.,Guler, S.,Xiao, Y.,Henkes, R.,Ho, K.,Zhang, S.,Chu, C.L.,Gundra, U.M.,Porichis, F.,Li, L.,Maurer, C.K.,Fang, Z.,Musil, D.,DiPoto, M.,Friis, E.,Jones, R.,Jones, C.,Cummings, J.,Chekler, E.,Tanzer, E.M.,Huck, B.,Sherer, B. Discovery of quinazoline HPK1 inhibitors with high cellular potency. Bioorg.Med.Chem. 2023 92 117423 117423 8CYU 37555275 Crystal structure of SARS-CoV-2 Mpro with compound C5 2022-05-24 2023-08-30 Perez-Vargas, J.,Worrall, L.J.,Olmstead, A.D.,Ton, A.T.,Lee, J.,Villanueva, I.,Thompson, C.A.H.,Dudek, S.,Ennis, S.,Smith, J.R.,Shapira, T.,De Guzman, J.,Gang, S.,Ban, F.,Vuckovic, M.,Bielecki, M.,Kovacic, S.,Kenward, C.,Hong, C.Y.,Gordon, D.G.,Levett, P.N.,Krajden, M.,Leduc, R.,Boudreault, P.L.,Niikura, M.,Paetzel, M.,Young, R.N.,Cherkasov, A.,Strynadka, N.C.J.,Jean, F. A novel class of broad-spectrum active-site-directed 3C-like protease inhibitors with nanomolar antiviral activity against highly immune-evasive SARS-CoV-2 Omicron subvariants. Emerg Microbes Infect 2023 12 2246594 2246594 8CYZ 37555275 Crystal structure of SARS-CoV-2 Mpro with compound C4 2022-05-24 2023-08-30 Perez-Vargas, J.,Worrall, L.J.,Olmstead, A.D.,Ton, A.T.,Lee, J.,Villanueva, I.,Thompson, C.A.H.,Dudek, S.,Ennis, S.,Smith, J.R.,Shapira, T.,De Guzman, J.,Gang, S.,Ban, F.,Vuckovic, M.,Bielecki, M.,Kovacic, S.,Kenward, C.,Hong, C.Y.,Gordon, D.G.,Levett, P.N.,Krajden, M.,Leduc, R.,Boudreault, P.L.,Niikura, M.,Paetzel, M.,Young, R.N.,Cherkasov, A.,Strynadka, N.C.J.,Jean, F. A novel class of broad-spectrum active-site-directed 3C-like protease inhibitors with nanomolar antiviral activity against highly immune-evasive SARS-CoV-2 Omicron subvariants. Emerg Microbes Infect 2023 12 2246594 2246594 8E67 ETV6 H396Y variant bound to DNA containing the sequence GGAT 2022-08-22 2023-08-30 Scheu, K.,Chan, A.C.,Murphy, M.E.,McIntosh, L.P. The functional role of histidine within the ETV6 ETS domain to be published 0 0 0 0 8SXR 37555275 Crystal structure of SARS-CoV-2 Mpro with C5a 2023-05-23 2023-08-30 Perez-Vargas, J.,Worrall, L.J.,Olmstead, A.D.,Ton, A.T.,Lee, J.,Villanueva, I.,Thompson, C.A.H.,Dudek, S.,Ennis, S.,Smith, J.R.,Shapira, T.,De Guzman, J.,Gang, S.,Ban, F.,Vuckovic, M.,Bielecki, M.,Kovacic, S.,Kenward, C.,Hong, C.Y.,Gordon, D.G.,Levett, P.N.,Krajden, M.,Leduc, R.,Boudreault, P.L.,Niikura, M.,Paetzel, M.,Young, R.N.,Cherkasov, A.,Strynadka, N.C.J.,Jean, F. A novel class of broad-spectrum active-site-directed 3C-like protease inhibitors with nanomolar antiviral activity against highly immune-evasive SARS-CoV-2 Omicron subvariants. Emerg Microbes Infect 2023 12 2246594 2246594 8EI4 37914719 Crystal structure of the WWP1 HECT domain in complex with H302, a Helicon Polypeptide 2022-09-14 2023-10-25 Tokareva, O.S.,Li, K.,Travaline, T.L.,Thomson, T.M.,Swiecicki, J.M.,Moussa, M.,Ramirez, J.D.,Litchman, S.,Verdine, G.L.,McGee, J.H. Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun 2023 14 6992 6992 8SX1 37971310 PARP4 catalytic domain 2023-05-19 2023-11-08 Frigon, L.,Pascal, J.M. Structural and biochemical analysis of the PARP1-homology region of PARP4/vault PARP. Nucleic Acids Res. 2023 51 12492 12507 8WD3 The Crystal Structure of JMJD2A(M1-L359) from Biortus. 2023-09-14 2023-11-22 Wang, F.,Cheng, W.,Yuan, Z.,Shang, H. The Crystal Structure of JMJD2A(M1-L359) from Biortus. To Be Published 0 0 0 0 8WGF The Crystal Structure of JNK3 from Biortus. 2023-09-21 2023-11-22 Wang, F.,Cheng, W.,Lv, Z.,Ju, C.,Wang, J. The Crystal Structure of JNK3 from Biortus. To Be Published 0 0 0 0 8WGQ The Crystal Structure of L-asparaginase from Biortus. 2023-09-22 2023-11-22 Wang, F.,Cheng, W.,Lv, Z.,Ju, C.,Wang, J. The Crystal Structure of L-asparaginase from Biortus. To Be Published 0 0 0 0 8F5X Crystal structure of human eosinophil-derived neurotoxin (EDN, ribonuclease 2) in complex with 5'-adenosine monophosphate (AMP) 2022-11-15 2023-11-29 Thi Thanh, Q.T.,Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of human eosinophil-derived neurotoxin (EDN, ribonuclease 2) in complex with 5'-adenosine monophosphate (AMP) To Be Published 0 0 0 0 8SWI 37795993 Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (1-12)peptide 2023-05-18 2023-12-27 Rolando, M.,Wah Chung, I.Y.,Xu, C.,Gomez-Valero, L.,England, P.,Cygler, M.,Buchrieser, C. The SET and ankyrin domains of the secreted Legionella pneumophila histone methyltransferase work together to modify host chromatin. Mbio 2023 14 0 0 8T5R 38156904 SOS2 crystal structure with fragment bound (compound 13) 2023-06-14 2024-01-10 Smith, C.R.,Chen, D.,Christensen, J.G.,Coulombe, R.,Fethiere, J.,Gunn, R.J.,Hollander, J.,Jones, B.,Ketcham, J.M.,Khare, S.,Kuehler, J.,Lawson, J.D.,Marx, M.A.,Olson, P.,Pearson, K.E.,Ren, C.,Tsagris, D.,Ulaganathan, T.,Van't Veer, I.,Wang, X.,Ivetac, A. Discovery of Five SOS2 Fragment Hits with Binding Modes Determined by SOS2 X-Ray Cocrystallography. J.Med.Chem. 2024 67 774 781 8SXQ 38160319 Crystal structure of Sel-1 repeat protein LceB from Legionella pneumophila 2023-05-23 2024-01-24 Penner, T.V.,Lorente Cobo, N.,Patel, D.T.,Patel, D.H.,Savchenko, A.,Brassinga, A.K.C.,Prehna, G. Structural characterization of the Sel1-like repeat protein LceB from Legionella pneumophila. Protein Sci. 2024 33 0 0 8G9A Crystal structure of a resurrected ancestor (AncRNase) of the pancreatic-type RNases 2 and 3 sub-families 2023-02-21 2024-02-28 Tran, T.T.Q.,Pham, N.T.H.,Calmettes, C.,Doucet, N. Crystal structure of a resurrected ancestor (AncRNase) of the pancreatic-type RNases 2 and 3 sub-families To Be Published 0 0 0 0 8UTE 38365209 Structure of SARS-Cov2 3CLPro in complex with Compound 27 2023-10-31 2024-03-06 Shurtleff, V.W.,Layton, M.E.,Parish, C.A.,Perkins, J.J.,Schreier, J.D.,Wang, Y.,Adam, G.C.,Alvarez, N.,Bahmanjah, S.,Bahnck-Teets, C.M.,Boyce, C.W.,Burlein, C.,Cabalu, T.D.,Campbell, B.T.,Carroll, S.S.,Chang, W.,de Lera Ruiz, M.,Dolgov, E.,Fay, J.F.,Fox, N.G.,Goh, S.L.,Hartingh, T.J.,Hurzy, D.M.,Kelly 3rd, M.J.,Klein, D.J.,Klingler, F.M.,Krishnamurthy, H.,Kudalkar, S.,Mayhood, T.W.,McKenna, P.M.,Murray, E.M.,Nahas, D.,Nawrat, C.C.,Park, S.,Qian, D.,Roecker, A.J.,Sharma, V.,Shipe, W.D.,Su, J.,Taggart, R.V.,Truong, Q.,Wu, Y.,Zhou, X.,Zhuang, N.,Perlin, D.S.,Olsen, D.B.,Howe, J.A.,McCauley, J.A. Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic. J.Med.Chem. 2024 67 3935 3958 8Y9A The Crystal Structure of USP8 from Biortus. 2024-02-06 2024-03-06 Wang, F.,Cheng, W.,Lv, Z.,Ju, C.,Bao, C. The Crystal Structure of USP8 from Biortus. To Be Published 0 0 0 0 8SR6 Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (3-17)peptide 2023-05-05 2024-03-13 Xu, C.,Chung, I.Y.W.,Cygler, M. Histone methyltransferase activity of the secreted Legionella pneumophila SET-domain effector RomA/LegAS4 depends on its ankyrin domain To Be Published 0 0 0 0 8YGZ The Crystal Structure of TGF beta R2 kinase domain from Biortus. 2024-02-27 2024-03-13 Wang, F.,Cheng, W.,Lv, Z.,Ju, C.,Wang, J. The Crystal Structure of TGF beta R2 kinase domain from Biortus. To Be Published 0 0 0 0 8YHL The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus 2024-02-28 2024-03-13 Wang, F.,Cheng, W.,Lv, Z.,Meng, Q.,Xu, Y. The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus To Be Published 0 0 0 0 8YHW The Crystal Structure of NF-kB-inducing Kinase (NIK) from Biortus 2024-02-28 2024-03-13 Wang, F.,Cheng, W.,Lv, Z.,Meng, Q.,Xu, Y. The Crystal Structure of NF-kB-inducing Kinase (NIK) from Biortus To Be Published 0 0 0 0 8T2M 38512999 Crystal structure of GABARAP in complex with the LIR of NSs4 2023-06-06 2024-04-03 Petraccione, K.,Ali, M.G.H.,Cyr, N.,Wahba, H.M.,Stocker, T.,Akhrymuk, M.,Akhrymuk, I.,Panny, L.,Bracci, N.,Cafaro, R.,Sastre, D.,Silberfarb, A.,O'Maille, P.,Omichinski, J.,Kehn-Hall, K. An LIR motif in the Rift Valley fever virus NSs protein is critical for the interaction with LC3 family members and inhibition of autophagy. Plos Pathog. 2024 20 0 0 8SPM Crystal structure of NikA in complex Ni-AMA 2023-05-03 2024-04-10 Sychantha, D.,Koteva, K.,Prehna, G.,Wright, G.D. Targeting bacterial nickel transport inhibits virulence-associated Ni-dependent enzymes To Be Published 0 0 0 0