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Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain Protein Sci. 2003 12 1432 1442 1NBS 12610630 Crystal structure of the specificity domain of Ribonuclease P RNA 2002-12-03 2003-02-18 Krasilnikov, A.S.,Yang, X.,Pan, T.,Mondragon, A. Crystal structure of the specificity domain of Ribonuclease P Nature 2003 421 760 764 1MXO 12526668 AmpC beta-lactamase in complex with an m.carboxyphenylglycylboronic acid bearing the cephalothin R1 side chain 2002-10-02 2003-03-04 Morandi, F.,Caselli, E.,Morandi, S.,Focia, P.J.,Blazquez, J.,Shoichet, B.K.,Prati, F. Nanomolar inhibitors of AmpC beta-lactamase. J.Am.Chem.Soc. 2003 125 685 695 1MY8 12526668 AmpC beta-lactamase in complex with an M.carboxyphenylglycylboronic acid bearing the cephalothin R1 side chain 2002-10-03 2003-03-04 Morandi, F.,Caselli, E.,Morandi, S.,Focia, P.J.,Blazquez, J.,Shoichet, B.K.,Prati, F. 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Structures of an ActRIIB:activin A complex reveal a novel binding mode for TGF-beta ligand:receptor interactions EMBO J. 2003 22 1555 1566 1NYU 12660162 Crystal Structure of Activin A Bound to the ECD of ActRIIB 2003-02-13 2003-04-08 Thompson, T.B.,Woodruff, T.K.,Jardetzky, T.S. Structures of an ActRIIB:activin A complex reveal a novel binding mode for TGF-beta ligand:receptor interactions EMBO J. 2003 22 1555 1566 1MMF 12538056 Crystal structure of substrate free form of glycerol dehydratase 2002-09-03 2003-06-10 Liao, D.I.,Dotson, G.,Turner, I.,Reiss, L.,Emptage, M. Crystal structure of substrate free form of glycerol dehydratase J.Inorg.Biochem. 2003 93 84 91 1NW1 12791258 Crystal Structure of Choline Kinase 2003-02-05 2003-06-10 Peisach, D.,Gee, P.,Kent, C.,Xu, Z. The Crystal Structure of Choline Kinase Reveals a Eukaryotic Protein Kinase Fold Structure 2003 11 703 713 1PIM DITHIONITE REDUCED E. 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Biochemistry 2003 42 14483 14491 1RPN 14739333 Crystal Structure of GDP-D-mannose 4,6-dehydratase in complexes with GDP and NADPH 2003-12-03 2004-02-24 Webb, N.A.,Mulichak, A.M.,Lam, J.S.,Rocchetta, H.L.,Garavito, R.M. Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhamnose biosynthetic pathway. Protein Sci. 2004 13 529 539 1SF9 Crystal Structure of Bacillus subtilis YfhH Protein : Putative Transcriptional Regulator 2004-02-19 2004-02-24 Minasov, G.,Shuvalova, L.,Brunzelle, J.S.,Kim, D.E.,Collart, F.R.,Anderson, W.F. 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Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate To be Published 0 0 0 0 2FZV 17962405 Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri 2006-02-10 2006-02-21 Vorontsov, I.I.,Minasov, G.,Brunzelle, J.S.,Shuvalova, L.,Kiryukhina, O.,Collart, F.R.,Anderson, W.F. Crystal structure of an apo form of Shigella flexneri ArsH protein with an NADPH-dependent FMN reductase activity Protein Sci. 2007 16 2483 2490 1Z6E 15771420 Factor XA in complex with the inhibitor 1-(3'-amino-1,2-benzisoxazol-5'-yl)-n-(4-(2'-((dimethylamino)methyl)-1h-imidazol-1-yl)-2-fluorophenyl)-3-(trifluoromethyl)-1h-pyrazole-5-carboxamide (razaxaban; DPC906; BMS-561389) 2005-03-22 2006-03-28 Quan, M.L.,Lam, P.Y.S.,Han, Q.,Pinto, D.J.P.,He, M.Y.,Li, R.,Ellis, C.D.,Clark, C.G.,Teleha, C.A.,Sun, J.-H.,Alexander, R.S.,Bai, S.,Luettgen, J.M.,Knabb, R.M.,Wong, P.C.,Wexler, R.R. Discovery of 1-(3'-aminobenzisoxazol-5'-yl)-3-trifluoromethyl-N-[2-fluoro-4-[(2'-dimethylaminomethyl)imidazol-1-yl]phenyl]-1H-pyrazole-5-carboxyamide hydrochloride (razaxaban), a highly potent, selective, and orally bioavailable factor Xa inhibitor. J.Med.Chem. 2005 48 1729 1744 2FFY 16506777 AmpC beta-lactamase N289A mutant in complex with a boronic acid deacylation transition state analog compound SM3 2005-12-20 2006-03-28 Chen, Y.,Minasov, G.,Roth, T.A.,Prati, F.,Shoichet, B.K. The deacylation mechanism of AmpC beta-lactamase at ultrahigh resolution J.Am.Chem.Soc. 2006 128 2970 2976 2B7J 16570183 Crystal Structure of Yeast Sco1 with Copper Bound 2005-10-04 2006-04-11 Abajian, C.,Rosenzweig, A.C. Crystal structure of yeast Sco1. J.Biol.Inorg.Chem. 2006 11 459 466 2B7K 16570183 Crystal Structure of Yeast Sco1 2005-10-04 2006-04-11 Abajian, C.,Rosenzweig, A.C. Crystal structure of yeast Sco1. 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The 2.2 A resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain Protein Sci. 2007 16 1285 1293 2FIH 16566588 Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU) 2005-12-29 2006-05-23 Li, F.,Sarkhel, S.,Wilds, C.J.,Wawrzak, Z.,Prakash, T.P.,Manoharan, M.,Egli, M. 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry 2006 45 4141 4152 2FII 16566588 Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU) 2005-12-29 2006-05-23 Li, F.,Sarkhel, S.,Wilds, C.J.,Wawrzak, Z.,Prakash, T.P.,Manoharan, M.,Egli, M. 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry 2006 45 4141 4152 2FIJ 16566588 Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) 2005-12-29 2006-05-23 Li, F.,Sarkhel, S.,Wilds, C.J.,Wawrzak, Z.,Prakash, T.P.,Manoharan, M.,Egli, M. 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry 2006 45 4141 4152 2FIL 16566588 Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) 2005-12-29 2006-05-23 Li, F.,Sarkhel, S.,Wilds, C.J.,Wawrzak, Z.,Prakash, T.P.,Manoharan, M.,Egli, M. 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry 2006 45 4141 4152 2H2R 16765898 Crystal structure of the human CD23 Lectin domain, apo form 2006-05-19 2006-06-20 Wurzburg, B.A.,Tarchevskaya, S.S.,Jardetzky, T.S. Structural Changes in the Lectin Domain of CD23, the Low-Affinity IgE Receptor, upon Calcium Binding. Structure 2006 14 1049 1058 2GUN 16800629 RNA-Binding Affinities and Crystal Structure of Oligonucleotides containing Five-Atom Amide-Based Backbone Structures 2006-05-01 2006-08-01 Pallan, P.S.,von Matt, P.,Wilds, C.J.,Altmann, K.-H.,Egli, M. RNA-Binding Affinities and Crystal Structure of Oligonucleotides Containing Five-Atom Amide-Based Backbone Structures. Biochemistry 2006 45 8048 8057 2HZ6 16973740 The crystal structure of human IRE1-alpha luminal domain 2006-08-08 2006-08-29 Zhou, J.,Liu, C.Y.,Back, S.H.,Clark, R.L.,Peisach, D.,Xu, Z.,Kaufman, R.J. The crystal structure of human IRE1 luminal domain reveals a conserved dimerization interface required for activation of the unfolded protein response. Proc.Natl.Acad.Sci.Usa 2006 103 14343 14348 2GSM 17050688 Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides 2006-04-26 2006-10-10 Qin, L.,Hiser, C.,Mulichak, A.,Garavito, R.M.,Ferguson-Miller, S. Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase. Proc.Natl.Acad.Sci.Usa 2006 103 16117 16122 2HLD 17082766 Crystal structure of yeast mitochondrial F1-ATPase 2006-07-06 2006-11-28 Kabaleeswaran, V.,Puri, N.,Walker, J.E.,Leslie, A.G.,Mueller, D.M. Novel features of the rotary catalytic mechanism revealed in the structure of yeast F(1) ATPase. Embo J. 2006 25 5433 5442 2DOI 16964966 The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcus protein PAM 2006-04-29 2006-12-05 Cnudde, S.E.,Prorok, M.,Castellino, F.J.,Geiger, J.H. X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcal surface protein PAM Biochemistry 2006 45 11052 11060 2H9S 16910680 Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System 2006-06-11 2006-12-12 Egli, M.,Pallan, P.S.,Pattanayek, R.,Wilds, C.J.,Lubini, P.,Minasov, G.,Dobler, M.,Leumann, C.J.,Eschenmoser, A. Crystal structure of homo-DNA and nature's choice of pentose over hexose in the genetic system. J.Am.Chem.Soc. 2006 128 10847 10856 2FD9 19562114 X-ray Crystal Structure of Chemically Synthesized Crambin-{alpha}carboxamide 2005-12-13 2007-01-16 Bang, D.,Tereshko, V.,Kossiakoff, A.A.,Kent, S.B. Role of a salt bridge in the model protein crambin explored by chemical protein synthesis: X-ray structure of a unique protein analogue, [V15A]crambin-alpha-carboxamide. 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Structure of the Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase To be Published 0 0 0 0 2C03 18931411 GDP COMPLEX OF SRP GTPASE FFH NG DOMAIN 2005-08-25 2007-02-13 Ramirez, U.D.,Focia, P.J.,Freymann, D.M. Nucleotide-Binding Flexibility in Ultrahigh-Resolution Structures of the Srp Gtpase Ffh Acta Crystallogr.,Sect.D 2008 64 1043 0 2C04 18931411 GMPPCP complex of SRP GTPase Ffh NG Domain at ultra-high resolution 2005-08-25 2007-02-13 Ramirez, U.D.,Focia, P.J.,Freymann, D.M. Nucleotide-Binding Flexibility in Ultrahigh-Resolution Structures of the Srp Gtpase Ffh Acta Crystallogr.,Sect.D 2008 64 1043 0 2O9C 17322301 Crystal Structure of Bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution 2006-12-13 2007-03-06 Wagner, J.R.,Zhang, J.,Brunzelle, J.S.,Vierstra, R.D.,Forest, K.T. High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J.Biol.Chem. 2007 282 12298 12309 2JEF 17337730 The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing 2007-01-17 2007-03-13 Eoff, R.L.,Angel, K.C.,Egli, M.,Guengerich, F.P. Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. J.Biol.Chem. 2007 282 13573 0 2O26 17255936 Structure of a class III RTK signaling assembly 2006-11-29 2007-03-13 Liu, H.,Chen, X.,Focia, P.J.,He, X. Structural basis for stem cell factor-KIT signaling and activation of class III receptor tyrosine kinases. 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J.Biol.Chem. 2007 282 19831 0 2PS0 18027003 Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli 2007-05-04 2007-06-05 Yatsunyk, L.A.,Easton, J.A.,Kim, L.R.,Sugarbaker, S.A.,Bennett, B.,Breece, R.M.,Vorontsov, I.I.,Tierney, D.L.,Crowder, M.W.,Rosenzweig, A.C. Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli. J.Biol.Inorg.Chem. 2008 13 271 288 2PS3 18027003 Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli 2007-05-04 2007-06-05 Yatsunyk, L.A.,Easton, J.A.,Kim, L.R.,Sugarbaker, S.A.,Bennett, B.,Breece, R.M.,Vorontsov, I.I.,Tierney, D.L.,Crowder, M.W.,Rosenzweig, A.C. Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli. 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Mol.Cell.Biol. 2008 28 1915 1923 3BV6 Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold 2008-01-04 2008-01-29 Minasov, G.,Shuvalova, L.,Brunzelle, J.S.,Yang, X.,Collart, F.R.,Anderson, W.F. Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold. To be Published 0 0 0 0 2RF3 18253536 Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion Angles 2007-09-27 2008-02-12 Pallan, P.S.,Ittig, D.,Heroux, A.,Wawrzak, Z.,Leumann, C.J.,Egli, M. Crystal structure of tricyclo-DNA: an unusual compensatory change of two adjacent backbone torsion angles. Chem.Commun.(Camb.) 2008 2008 883 885 3B96 18227065 Structural Basis for Substrate Fatty-Acyl Chain Specificity: Crystal Structure of Human Very-Long-Chain Acyl-CoA Dehydrogenase 2007-11-02 2008-02-12 McAndrew, R.P.,Wang, Y.,Mohsen, A.W.,He, M.,Vockley, J.,Kim, J.J. 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Arch.Biochem.Biophys. 2008 474 157 166 3CKM 18412262 LpoA (YraM) C-domain from Haemophilus influenzae, a regulator of PBP1A 2008-03-16 2008-05-13 Vijayalakshmi, J.,Akerley, B.J.,Saper, M.A. Structure of YraM, a protein essential for growth of Haemophilus influenzae. Proteins 2008 73 204 217 2QKE 18497745 Wild Type Crystal Structure of Full Length Circadian Clock Protein KaiB from Thermosynechococcus elongatus BP-1 2007-07-10 2008-06-17 Pattanayek, R.,Williams, D.R.,Pattanayek, S.,Mori, T.,Johnson, C.H.,Stewart, P.L.,Egli, M. Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation. Embo J. 2008 27 1767 1778 3CWD 18604218 Molecular recognition of nitro-fatty acids by PPAR gamma 2008-04-21 2008-07-08 Li, Y.,Zhang, J.,Schopfer, F.J.,Martynowski, D.,Garcia-Barrio, M.T.,Kovach, A.,Suino-Powell, K.,Baker, P.R.,Freeman, B.A.,Chen, Y.E.,Xu, H.E. Molecular recognition of nitrated fatty acids by PPAR gamma. 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