PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1NNW hypothetical protein from Pyrococcus furiosus Pfu-1218608 2003-01-14 2003-02-11 Southeast Collaboratory for Structural Genomics Southeast Collaboratory for Structural Genomics: hypothetical protein from Pyrococcus furiosus Pfu-1218608 To be published 0 0 0 0 1OOE 14635135 Structural Genomics of Caenorhabditis elegans : Dihydropteridine reductase 2003-03-03 2003-03-18 Symersky, J.,Li, S.,Carson, M.,Luo, D.,Luan, C.H.,Luo, M. Structural genomics of Caenorhabditis elegans: structure of dihydropteridine reductase. Proteins 2003 53 944 946 1MX9 12679808 Crystal Structure of Human Liver Carboxylesterase in complexed with naloxone methiodide, a heroin analogue 2002-10-01 2003-04-08 Bencharit, S.,Morton, C.L.,Xue, Y.,Potter, P.M.,Redinbo, M.R. Structural Basis of Heroin and Cocaine Metabolism by a Promiscuous Human Drug-Processing Enzyme Nat.Struct.Biol. 2003 10 349 356 1M65 12661000 YCDX PROTEIN 2002-07-12 2003-04-22 Teplyakov, A.,Obmolova, G.,Khil, P.P.,Howard, A.J.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET 2003 51 315 318 1M68 12661000 YCDX PROTEIN, TRINUCLEAR ZINC SITE 2002-07-14 2003-04-22 Teplyakov, A.,Obmolova, G.,Khil, P.P.,Howard, A.J.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET 2003 51 315 318 1OX0 12837788 The crystal structure of beta-ketoacyl-[acyl carrier protein] synthase II from Streptococcus pneumoniae 2003-03-31 2003-04-22 Price, A.C.,Rock, C.O.,White, S.W. The 1.3-Angstrom-Resolution Crystal Structure of beta-Ketoacyl-Acyl Carrier Protein Synthase II from Streptococcus pneumoniae. J.Bacteriol. 2003 185 4136 4143 1OXH 12837788 The crystal structure of beta-ketoacyl-[acyl carrier protein] synthase II from Streptococcus Pneumoniae, Triclinic form 2003-04-02 2003-04-22 Price, A.C.,Rock, C.O.,White, S.W. The 1.3-Angstrom-Resolution Crystal Structure of beta-Ketoacyl-Acyl Carrier Protein Synthase II from Streptococcus pneumoniae. J.Bacteriol. 2003 185 4136 4143 1PGV 15211521 Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain 2003-05-28 2003-06-10 Lu, S.,Symersky, J.,Li, S.,Carson, M.,Chen, L.,Meehan, E.,Luo, M. Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain Proteins 2004 56 384 386 1P5Z 12808445 Structure of human dCK complexed with cytarabine and ADP-MG 2003-04-28 2003-07-01 Sabini, E.,Ort, S.,Monnerjahn, C.,Konrad, M.,Lavie, A. Structure of human dCK suggests strategies to improve anticancer and antiviral therapy Nat.Struct.Biol. 2003 10 513 519 1P62 12808445 Structure of human dCK complexed with gemcitabine and ADP-MG 2003-04-28 2003-07-01 Sabini, E.,Ort, S.,Monnerjahn, C.,Konrad, M.,Lavie, A. Structure of human dCK suggests strategies to improve anticancer and antiviral therapy Nat.Struct.Biol. 2003 10 513 519 1PZV Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans 2003-07-14 2003-07-22 Schormann, N.,Lin, G.,Li, S.,Symersky, J.,Qiu, S.,Finley, J.,Luo, D.,Stanton, A.,Carson, M.,Luo, M.,DeLucas, L.,Pruett, P.,Nagy, L.,Arabashi, A.,Gray, R.,Johnson, D.,Tsao, J.,Bunzel, B.,Huang, W.,Shang, Q.,Luan, C.-H.,Lu, S.,Zhang, J.,McKinstry, A.,Chen, H. Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans To be Published 0 0 0 0 1OPH 12860985 NON-COVALENT COMPLEX BETWEEN ALPHA-1-PI-PITTSBURGH AND S195A TRYPSIN 2003-03-05 2003-08-05 Dementiev, A.,Simonovic, M.,Volz, K.,Gettins, P.G. Canonical inhibitor-like interactions explain reactivity of alpha1-proteinase inhibitor Pittsburgh and antithrombin with proteinases J.Biol.Chem. 2003 278 37881 37887 1OPH 12860985 NON-COVALENT COMPLEX BETWEEN ALPHA-1-PI-PITTSBURGH AND S195A TRYPSIN 2003-03-05 2003-08-05 Dementiev, A.,Simonovic, M.,Volz, K.,Gettins, P.G. Canonical inhibitor-like interactions explain reactivity of alpha1-proteinase inhibitor Pittsburgh and antithrombin with proteinases J.Biol.Chem. 2003 278 37881 37887 1OQN 12826668 Crystal structure of the phosphotyrosine binding domain (PTB) of mouse Disabled 1 (Dab1) 2003-03-10 2003-08-05 Yun, M.,Keshvara, L.,Park, C.-G.,Zhang, Y.-M.,Dickerson, J.B.,Zheng, J.,Rock, C.O.,Curran, T.,Park, H.-W. Crystal structures of the Dab homology domains of mouse disabled 1 and 2 J.Biol.Chem. 2003 278 36572 36581 1P3R 12826668 Crystal structure of the phosphotyrosin binding domain(PTB) of mouse Disabled 1(Dab1) 2003-04-18 2003-08-05 Yun, M.,Keshvara, L.,Park, C.G.,Zhang, Y.M.,Dickerson, J.B.,Zheng, J.,Rock, C.O.,Curran, T.,Park, H.W. Crystal structures of the Dab homology domains of mouse disabled 1 and 2. J.Biol.Chem. 2003 278 36572 36581 1Q34 Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans 2003-07-28 2003-08-05 Schormann, N.,Lin, G.,Li, S.,Symersky, J.,Qiu, S.,Finley, J.,Luo, D.,Stanton, A.,Carson, M.,Luo, M. Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans To be Published 0 0 0 0 1QWK Structural genomics of Caenorhabditis Elegans: Hypothetical 35.2 kDa protein (aldose reductase family member) 2003-09-02 2003-09-16 Chen, L.,Zhou, X.E.,Meehan, E.J.,Symersky, J.,Lu, S.,Li, S.,Luo, M. Structural genomics of Caenorhabditis Elegans: Hypothetical 35.2 kDa protein (aldose reductase family member) To be published 0 0 0 0 1Q20 12923182 Crystal Structure of human cholesterol sulfotransferase (SULT2B1b) in the presence of PAP and pregnenolone 2003-07-23 2003-11-11 Lee, K.A.,Fuda, H.,Lee, Y.C.,Negishi, M.,Strott, C.A.,Pedersen, L.C. Crystal structure of human cholesterol sulfotransferase (SULT2B1b) in the presence of pregnenolone and 3'-phosphoadenosine 5'-phosphate. Rationale for specificity differences between prototypical SULT2A1 and the SULT2BG1 isoforms. J.Biol.Chem. 2003 278 44593 44599 1QZ0 14609321 Crystal Structure of the Yersinia Pestis Phosphatase YopH in Complex with a Phosphotyrosyl Mimetic-Containing Hexapeptide 2003-09-15 2003-11-25 Phan, J.,Lee, K.,Cherry, S.,Tropea, J.E.,Burke Jr, T.R.,Waugh, D.S. High-Resolution Structure of the Yersinia pestis Protein Tyrosine Phosphatase YopH in Complex with a Phosphotyrosyl Mimetic-Containing Hexapeptide Biochemistry 2003 42 13113 13121 1R9H Structural Genomics of C.elegans: FKBP-type Peptidylprolyl Isomerase 2003-10-29 2003-12-02 Li, S.,Finley, J.,Luan, C.-H.,Qiu, S.,Gray, R.,Shang, Q.,Luo, D.,Hongli, C.,Zhao, J.,Huang, W.-Y.,DeLucas, L.J.,Nagy, L.,Stanton, A.,Luo, M.,Symersky, J.,Schormann, N.,Lin, G.,Tsao, J.,Johnson, D.H.,Carson, W.M. Structural Genomics of C.elegans: FKBP-type Peptidylprolyl Isomerase To be Published 0 0 0 0 1P6F 12960161 Structure of the human natural cytotoxicity receptor NKp46 2003-04-29 2003-12-09 Foster, C.E.,Colonna, M.,Sun, P.D. Crystal structure of the human natural killer (NK) cell activating receptor NKp46 reveals structural relationship to other leukocyte receptor complex immunoreceptors. J.Biol.Chem. 2003 278 46081 46086 1R4N 14690597 APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex with ATP 2003-10-07 2003-12-23 Walden, H.,Podgorski, M.S.,Huang, D.T.,Miller, D.W.,Howard, R.J.,Minor, D.L.,Holton, J.M.,Schulman, B.A. The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol.Cell 2003 12 1427 1437 1ODO 14691240 1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2) 2003-02-19 2004-01-02 Podust, L.M.,Bach, H.,Kim, Y.,Lamb, D.C.,Arase, M.,Sherman, D.H.,Kelly, S.L.,Waterman, M.R. Comparison of the 1.85 A Structure of Cyp154A1 from Streptomyces Coelicolor A3(2) with the Closely Related Cyp154C1 and Cyps from Antibiotic Biosynthetic Pathways. Protein Sci. 2004 13 255 0 1RPU 14697199 Crystal Structure of CIRV p19 bound to siRNA 2003-12-03 2004-01-13 Vargason, J.M.,Szittya, G.,Burgyan, J.,Hall, T.M.T. Size selective recognition of siRNA by an RNA silencing suppressor Cell(Cambridge,Mass.) 2003 115 799 811 1NMO 14519207 Structural genomics, protein ybgI, unknown function 2003-01-10 2004-01-20 Ladner, J.E.,Obmolova, G.,Teplyakov, A.,Howard, A.J.,Khil, P.P.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site BMC Struct.Biol. 2003 3 7 0 1NMP 14519207 Structural genomics, ybgI protein, unknown function 2003-01-10 2004-01-20 Ladner, J.E.,Obmolova, G.,Teplyakov, A.,Howard, A.J.,Khil, P.P.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site BMC Struct.Biol. 2003 3 7 0 1NNH Hypothetical protein from Pyrococcus furiosus Pfu-1801964 2003-01-13 2004-02-03 Southeast Collaboratory for Structural Genomics Hypothetical protein from Pyrococcus furiosus Pfu-1801964 To be published 0 0 0 0 1RZI 14981267 Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab 2003-12-24 2004-02-03 Huang, C.C.,Venturi, M.,Majeed, S.,Moore, M.J.,Phogat, S.,Zhang, M.-Y.,Dimitrov, D.S.,Hendrickson, W.A.,Robinson, J.,Sodroski, J.,Wyatt, R.,Choe, H.,Farzan, M.,Kwong, P.D. Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA 2004 101 2706 2711 1RZ9 14967147 Crystal Structure of AAV Rep complexed with the Rep-binding sequence 2003-12-24 2004-02-17 Hickman, A.B.,Ronning, D.R.,Perez, Z.N.,Kotin, R.M.,Dyda, F. The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell 2004 13 403 414 1NNQ 15468318 rubrerythrin from Pyrococcus furiosus Pfu-1210814 2003-01-14 2004-03-02 Tempel, W.,Liu, Z.-J.,Schubot, F.D.,Shah, A.,Weinberg, M.V.,Jenney Jr., F.E.,Arendall III, W.B.,Adams, M.W.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.-C. Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin Proteins 2004 57 878 882 1SCZ Improved structural model for the catalytic domain of E.coli dihydrolipoamide succinyltransferase 2004-02-12 2004-03-02 Schormann, N.,Symersky, J.,Carson, M.,Luo, M.,Tsao, J.,Johnson, D.,Huang, W.-Y.,Pruett, P.,Lin, G.,Li, S.,Qiu, S.,Arabashi, A.,Bunzel, B.,Luo, D.,Nagy, L.,Gray, R.,Luan, C.-H.,Zhang, Z.,Lu, S.,DeLucas, L. Improved structural model for the catalytic domain of E.coli dihydrolipoamide succinyltransferase To be Published 0 0 0 0 1PE9 12832805 MUTATIONS IN THE T1.5 LOOP OF PECTATE LYASE A 2003-05-21 2004-03-16 Dehdashti, S.J.,Doan, C.N.,Chao, K.L.,Yoder, M.D. Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16. Acta Crystallogr.,Sect.D 2003 59 1339 1342 1R46 15003450 Structure of human alpha-galactosidase 2003-10-03 2004-03-16 Garman, S.C.,Garboczi, D.N. The molecular defect leading to Fabry disease: structure of human alpha-galactosidase J.Mol.Biol. 2004 337 319 335 1R47 15003450 Structure of human alpha-galactosidase 2003-10-03 2004-03-16 Garman, S.C.,Garboczi, D.N. The molecular defect leading to Fabry disease: structure of human alpha-galactosidase J.Mol.Biol. 2004 337 319 335 1NJX 15035983 THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE 2003-01-02 2004-03-30 Johnson, S.J.,Beese, L.S. Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.) 2004 116 803 816 1RC7 15016361 Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution 2003-11-03 2004-03-30 Blaszczyk, J.,Gan, J.,Tropea, J.E.,Court, D.L.,Waugh, D.S.,Ji, X. Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure 2004 12 457 466 1VF6 15241471 2.1 Angstrom crystal structure of the PALS-1-L27N and PATJ L27 heterodimer complex 2004-04-09 2004-04-20 Li, Y.,Karnak, D.,Demeler, B.,Margolis, B.,Lavie, A. Structural basis for L27 domain-mediated assembly of signaling and cell polarity complexes. Embo J. 2004 23 2723 2733 1T7S 15333932 Structural Genomics of Caenorhabditis elegans: Structure of BAG-1 protein 2004-05-10 2004-05-18 Symersky, J.,Zhang, Y.,Schormann, N.,Li, S.,Bunzel, R.,Pruett, P.,Luan, C.H.,Luo, M. Structural genomics of Caenorhabditis elegans: structure of the BAG domain. Acta Crystallogr.,Sect.D 2004 60 1606 1610 1QX2 15137763 X-ray Structure of Calcium-loaded Calbindomodulin (A Calbindin D9k Re-engineered to Undergo a Conformational Opening) at 1.44 A Resolution 2003-09-04 2004-05-25 Bunick, C.G.,Nelson, M.R.,Mangahas, S.,Hunter, M.J.,Sheehan, J.H.,Mizoue, L.S.,Bunick, G.J.,Chazin, W.J. Designing Sequence to Control Protein Function in an EF-Hand Protein J.Am.Chem.Soc. 2004 126 5990 5998 1RE4 14992584 Crystal Structure of Fragment D of BbetaD398A Fibrinogen 2003-11-06 2004-05-25 Kostelansky, M.S.,Bolliger-Stucki, B.,Betts, L.,Gorkun, O.V.,Lord, S.T. BbetaGlu397 and BbetaAsp398 but not BbetaAsp432 are required for ""B:b"" interactions. Biochemistry 2004 43 2465 2474 1T9F Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function 2004-05-16 2004-05-25 Symersky, J.,Li, S.,Bunzel, R.,Schormann, N.,Luo, D.,Huang, W.Y.,QIU, S.,Gray, R.,ZHANG, Y.,ARABASHI, A.,Lu, S.,LUAN, C.H.,Tsao, J.,DeLucas, L.,Luo, M. Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function. To be Published 0 0 0 0 1T9F Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function 2004-05-16 2004-05-25 Symersky, J.,Li, S.,Bunzel, R.,Schormann, N.,Luo, D.,Huang, W.Y.,QIU, S.,Gray, R.,ZHANG, Y.,ARABASHI, A.,Lu, S.,LUAN, C.H.,Tsao, J.,DeLucas, L.,Luo, M. Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function. To be Published 0 0 0 0 1UXO 15159570 The crystal structure of the ydeN gene product from B. subtilis 2004-02-27 2004-05-27 Janda, I.,Devedjiev, Y.,Cooper, D.,Chruszcz, M.,Derewenda, U.,Gabrys, A.,Minor, W.,Joachimiak, A.,Derewenda, Z.S. Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution. Acta Crystallogr. D Biol. Crys 2004 60 1101 1107 1Q6X 15131697 Crystal structure of rat choline acetyltransferase 2003-08-14 2004-06-01 Cai, Y.,Cronin, C.N.,Engel, A.G.,Ohno, K.,Hersh, L.B.,Rodgers, D.W. Choline acetyltransferase structure reveals distribution of mutations that cause motor disorders. Embo J. 2004 23 2047 2058 1VKJ 15060080 Crystal structure of heparan sulfate 3-O-sulfotransferase isoform 1 in the presence of PAP 2004-05-25 2004-06-01 Edavettal, S.C.,Lee, K.A.,Negishi, M.,Linhardt, R.J.,Liu, J.,Pedersen, L.C. Crystal structure and mutational analysis of heparan sulfate 3-O-sulfotransferase isoform 1 J.Biol.Chem. 2004 279 25789 25797 1TEV 15163660 Crystal structure of the human UMP/CMP kinase in open conformation 2004-05-25 2004-06-22 Sekulic, N.,Ort, S.,Konrad, M.,Lavie, A. Substrate-induced Conformational Changes in Human UMP/CMP Kinase. J.Biol.Chem. 2004 279 33882 33889 1R4I 15037741 Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element 2003-10-06 2004-06-29 Shaffer, P.L.,Jivan, A.,Dollins, D.E.,Claessens, F.,Gewirth, D.T. Structural basis of androgen receptor binding to selective androgen response elements. Proc.Natl.Acad.Sci.USA 2004 101 4758 4763 1SEN Endoplasmic reticulum protein Rp19 O95881 2004-02-17 2004-07-13 Liu, Z.-J.,Chen, L.,Tempel, W.,Shah, A.,Lee, D.,Rose, J.P.,Richardson, D.C.,Richardson, J.S.,Wang, B.-C. Endoplasmic reticulum protein Rp19 To be Published 0 0 0 0 1T3M 15159592 Structure of the isoaspartyl peptidase with L-asparaginase activity from E. coli 2004-04-27 2004-07-13 Prahl, A.,Pazgier, M.,Hejazi, M.,Lockau, W.,Lubkowski, J. Structure of the isoaspartyl peptidase with L-asparaginase activity from Escherichia coli. Acta Crystallogr.,Sect.D 2004 60 1173 1176 1VKA Southeast Collaboratory for Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment 2004-05-10 2004-07-13 Liu, Z.-J.,Tempel, W.,SCHUBOT, F.D.,SHAH, A.,ROSE, J.P.,RICHARDSON, D.C.,RICHARDSON, J.S.,Wang, B.-C. Southeast Collaboratory for Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment TO BE PUBLISHED 0 0 0 0 1R7J 15312764 Crystal structure of the DNA-binding protein Sso10a from Sulfolobus solfataricus 2003-10-21 2004-07-20 Chen, L.,Chen, L.R.,Zhou, X.E.,Wang, Y.,Kahsai, M.A.,Clark, A.T.,Edmondson, S.P.,Liu, Z.J.,Rose, J.P.,Wang, B.C.,Meehan, E.J.,Shriver, J.W. The hyperthermophile protein Sso10a is a dimer of winged helix DNA-binding domains linked by an antiparallel coiled coil rod. J.Mol.Biol. 2004 341 73 91 1S4B 14998993 Crystal structure of human thimet oligopeptidase. 2004-01-15 2004-07-20 Ray, K.,Hines, C.S.,Coll-Rodriguez, J.,Rodgers, D.W. Crystal structure of human thimet oligopeptidase provides insight into substrate recognition, regulation, and localization J.Biol.Chem. 2004 279 20480 20489 1TZB 15252053 Crystal structure of native phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum 2004-07-09 2004-07-20 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution J.Biol.Chem. 2004 279 39838 39845 1TZC 15252053 Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with 5-phosphoarabinonate 2004-07-09 2004-07-20 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution J.Biol.Chem. 2004 279 39838 39845 1UUJ 15274919 N-terminal domain of Lissencephaly-1 protein (Lis-1) 2003-12-22 2004-07-29 Kim, M.H.,Cooper, D.R.,Oleksy, A.,Devedjiev, Y.,Derewenda, U.,Reiner, O.,Otlewski, J.,Derewenda, Z.S. The Structure of the N-Terminal Domain of the Product of the Lissencephaly Gene Lis1 and its Functional Implications Structure 2004 12 987 0 1RYQ 15858261 Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001 2003-12-22 2004-08-10 Liu, Z.J.,Lin, D.,Tempel, W.,Praissman, J.L.,Rose, J.P.,Wang, B.C. Parameter-space screening: a powerful tool for high-throughput crystal structure determination. Acta Crystallogr.,Sect.D 2005 61 520 527 1SGW Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001 2004-02-24 2004-08-10 Liu, Z.J.,Tempel, W.,Shah, A.,Chen, L.,Lee, D.,Kelley, L.-L.C.,Dillard, B.D.,Rose, J.P.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.S.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Richardson, D.C.,Richardson, J.S.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001 To be Published 0 0 0 0 1VJK Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 2004-03-10 2004-08-10 Chen, L.,Liu, Z.J.,Tempel, W.,Shah, A.,Lee, D.,Rose, J.P.,ENEH, J.C.,HOPKINS, R.C.,JENNEY JR., F.E.,LEE, H.S.,Li, T.,POOLE II, F.L.,SHAH, C.,SUGAR, F.J.,ADAMS, M.W.W.,Richardson, D.C.,Richardson, J.S.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 ' To be published 0 0 0 0 1VK1 17617922 Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001 2004-04-13 2004-08-10 Shaw, N.,Cheng, C.,Tempel, W.,Chang, J.,Ng, J.,Wang, X.Y.,Perrett, S.,Rose, J.,Rao, Z.,Wang, B.C.,Liu, Z.J. (NZ)CH...O contacts assist crystallization of a ParB-like nuclease. Bmc Struct.Biol. 2007 7 46 46 1RR7 14729670 Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu 2003-12-08 2004-08-17 Kumaraswami, M.,Howe, M.M.,Park, H.W. Crystal structure of the Mor protein of bacteriophage Mu, a member of the Mor/C family of transcription activators. J.Biol.Chem. 2004 279 16581 16590 1SR5 15311268 ANTITHROMBIN-ANHYDROTHROMBIN-HEPARIN TERNARY COMPLEX STRUCTURE 2004-03-22 2004-08-17 Dementiev, A.,Petitou, M.,Herbert, J.M.,Gettins, P.G. The ternary complex of antithrombin-anhydrothrombin-heparin reveals the basis of inhibitor specificity. Nat.Struct.Mol.Biol. 2004 11 863 867 1S95 15155720 Structure of serine/threonine protein phosphatase 5 2004-02-03 2004-08-24 Swingle, M.R.,Honkanen, R.E.,Ciszak, E.M. Structural basis for the catalytic activity of human serine/threonine protein phosphatase-5. J.Biol.Chem. 2004 279 33992 33999 1TBW 15292259 Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation 2004-05-20 2004-08-24 Immormino, R.M.,Dollins, D.E.,Shaffer, P.L.,Soldano, K.L.,Walker, M.A.,Gewirth, D.T. Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. 2004 279 46162 46171 1TC6 15292259 Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation ADP-Complex 2004-05-20 2004-08-24 Immormino, R.M.,Dollins, D.E.,Shaffer, P.L.,Soldano, K.L.,Walker, M.A.,Gewirth, D.T. Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. 2004 279 46162 46171 1TF7 15304218 Crystal Structure of Circadian Clock Protein KaiC 2004-05-26 2004-08-24 Pattanayek, R.,Wang, J.,Mori, T.,Xu, Y.,Johnson, C.H.,Egli, M. Visualizing a Circadian Clock Protein; Crystal Structure of KaiC and Functional Insights Mol.Cell 2004 15 375 388 1TTW 15333930 Crystal structure of the Yersinia Pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2 2004-06-23 2004-08-31 Phan, J.,Tropea, J.E.,Waugh, D.S. Structure of the Yersinia pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2. Acta Crystallogr.,Sect.D 2004 60 1591 1599 1Q32 17707402 Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 2003-07-28 2004-09-07 He, X.,van Waardenburg, R.C.,Babaoglu, K.,Price, A.C.,Nitiss, K.C.,Nitiss, J.L.,Bjornsti, M.A.,White, S.W. Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol. 2007 372 1070 1081 1S28 15341731 Crystal Structure of AvrPphF ORF1, the Chaperone for the Type III Effector AvrPphF ORF2 from P. syringae 2004-01-08 2004-09-14 Singer, A.U.,Desveaux, D.,Betts, L.,Chang, J.H.,Nimchuk, Z.,Grant, S.R.,Dangl, J.L.,Sondek, J. Crystal Structures of the Type III Effector Protein AvrPphF and Its Chaperone Reveal Residues Required for Plant Pathogenesis Structure 2004 12 1669 1681 1TWS 15341734 Dihydropteroate Synthetase From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TWW 15341734 Dihydropteroate Synthetase, With Bound Substrate Analogue PtPP, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TWZ 15341734 Dihydropteroate Synthetase, With Bound Substrate Analogue PtP, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TX0 15341734 Dihydropteroate Synthetase, With Bound Product Analogue Pteroic Acid, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TX2 15341734 Dihydropteroate Synthetase, With Bound Inhibitor MANIC, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1U4B 15322558 Extension of an adenine-8oxoguanine mismatch 2004-07-23 2004-09-14 Hsu, G.W.,Ober, M.,Carell, T.,Beese, L.S. Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase. Nature 2004 431 217 221 1WMS 15263003 High resolution crystal structure of human Rab9 GTPase: a novel antiviral drug target 2004-07-16 2004-09-14 Chen, L.,DiGiammarino, E.,Zhou, X.E.,Wang, Y.,Toh, D.,Hodge, T.W.,Meehan, E.J. High resolution crystal structure of human Rab9 GTPase: A novel antiviral drug target J.Biol.Chem. 2004 279 40204 40208 1T61 15299013 crystal structure of collagen IV NC1 domain from placenta basement membrane 2004-05-05 2004-09-21 Vanacore, R.M.,Shanmugasundararaj, S.,Friedman, D.B.,Bondar, O.,Hudson, B.G.,Sundaramoorthy, M. The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links J.Biol.Chem. 2004 279 44723 44730 1XE1 Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001 2004-09-08 2004-09-21 Chang, J.C.,Zhao, M.,Zhou, W.,Liu, Z.J.,Tempel, W.,Arendall III, W.B.,Chen, L.,Lee, D.,Habel, J.E.,Rose, J.P.,Richardson, J.S.,Richardson, D.C.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001 To be published 0 0 0 0 1SQ5 15136582 Crystal Structure of E. coli Pantothenate kinase 2004-03-17 2004-09-28 Ivey, R.A.,Zhang, Y.-M.,Virga, K.G.,Hevener, K.,Lee, R.E.,Rock, C.O.,Jackowski, S.,Park, H.-W. The structure of the pantothenate kinase.ADP.pantothenate ternary complex reveals the relationship between the binding sites for substrate, allosteric regulator, and antimetabolites. J.Biol.Chem. 2004 279 35622 35629 1TQH 15327954 Covalent Reaction intermediate Revealed in Crystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est30 2004-06-17 2004-09-28 Liu, P.,Wang, Y.F.,Ewis, H.E.,Abdelal, A.T.,Lu, C.D.,Harrison, R.W.,Weber, I.T. Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30. J.Mol.Biol. 2004 342 551 561 1TQH 15327954 Covalent Reaction intermediate Revealed in Crystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est30 2004-06-17 2004-09-28 Liu, P.,Wang, Y.F.,Ewis, H.E.,Abdelal, A.T.,Lu, C.D.,Harrison, R.W.,Weber, I.T. Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30. J.Mol.Biol. 2004 342 551 561 1TQI 15341724 Crystal Structure of A. Fulgidus Rio2 Serine Protein Kinase 2004-06-17 2004-09-28 LaRonde-LeBlanc, N.,Wlodawer, A. Crystal Structure of A. fulgidus Rio2 Defines a New Family of Serine Protein Kinases Structure 2004 12 1585 1594 1TQM 15341724 Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to AMPPNP 2004-06-17 2004-09-28 LaRonde-LeBlanc, N.,Wlodawer, A. Crystal Structure of A. fulgidus Rio2 Defines a New Family of Serine Protein Kinases Structure 2004 12 1585 1594 1XI3 Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001 2004-09-21 2004-09-28 Zhou, W.,Chen, L.,Tempel, W.,Liu, Z.-J.,Habel, J.,Lee, D.,Lin, D.,Chang, S.-H.,DILLARD, B.D.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,KELLEY, L.-L.C.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Adams, M.W.W.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001 To be published 0 0 0 0 1S99 15451668 The structure and function of B. subtilis YkoF gene product: ligand free protein 2004-02-04 2004-10-05 Devedjiev, Y.,Surendranath, Y.,Derewenda, U.,Gabrys, A.,Cooper, D.R.,Zhang, R.G.,Lezondra, L.,Joachimiak, A.,Derewenda, Z.S. The Structure and Ligand Binding Properties of the B.subtilis YkoF Gene Product, a Member of a Novel Family of Thiamin/HMP-binding Proteins J.Mol.Biol. 2004 343 395 406 1TJG 15367639 Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 7mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the Anti-Human Immunodeficiency Virus Type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1TJH 15367639 Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the anti-human immunodeficiency virus type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1TJI 15367639 Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the Anti-Human Immunodeficiency Virus type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1XK8 Divalent cation tolerant protein CUTA from Homo sapiens O60888 2004-09-27 2004-10-19 Tempel, W.,Chen, L.,Liu, Z.-J.,Lee, D.,Shah, A.,Dailey, T.A.,Mayer, M.R.,Arendall III, W.B.,Rose, J.P.,Dailey, H.A.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C. Divalent cation tolerant protein CUTA from Homo sapiens O60888 To be published 0 0 0 0 1XQG 15501821 3.10 A crystal structure of maspin, Space group P 4 21 2 2004-10-12 2004-10-26 Al-Ayyoubi, M.,Gettins, P.G.,Volz, K. Crystal Structure of Human Maspin, a Serpin with Antitumor Properties: Reactive Center Loop of Mapsin is Exposed but Constrained J.Biol.Chem. 2004 279 55540 55544 1XQJ 15501821 3.10 A Crystal structure of maspin, space group I 4 2 2 2004-10-12 2004-10-26 Al-Ayyoubi, M.,Gettins, P.G.,Volz, K. Crystal Structure of Human Maspin, a Serpin with Antitumor Properties: Reactive Center Loop of Mapsin is Exposed but Constrained J.Biol.Chem. 2004 279 55540 55544 1TNO 15451670 Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a KKKSKTKCVIM Peptide Derived from K-Ras4B 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1TNU 15451670 Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a GCINCCKVL Peptide Derived from RhoB 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1TNY 15451670 Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a FREKKFFCAIL Peptide Derived from the Heterotrimeric G Protein Gamma-2 Subunit 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1U0F 15342241 Crystal structure of mouse phosphoglucose isomerase in complex with glucose 6-phosphate 2004-07-13 2004-11-02 Graham Solomons, J.T.,Zimmerly, E.M.,Burns, S.,Krishnamurthy, N.,Swan, M.K.,Krings, S.,Muirhead, H.,Chirgwin, J.,Davies, C. The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening. J.Mol.Biol. 2004 342 847 860 1XPL 15498869 Crystal Structure of Staphylococcus aureus HMG-COA Synthase with Acetoacetyl-COA and Acetylated Cysteine 2004-10-08 2004-11-02 Theisen, M.J.,Misra, I.,Saadat, D.,Campobasso, N.,Miziorko, H.M.,Harrison, D.H.T. 3-hydroxy-3-methylglutaryl-CoA synthase intermediate complex observed in ""real-time"" Proc.Natl.Acad.Sci.USA 2004 47 16442 16447 1T0F 15257292 Crystal Structure of the TnsA/TnsC(504-555) complex 2004-04-08 2004-11-09 Ronning, D.R.,Li, Y.,Perez, Z.N.,Ross, P.D.,Hickman, A.B.,Craig, N.L.,Dyda, F. The carboxy-terminal portion of TnsC activates the Tn7 transposase through a specific interaction with TnsA. Embo J. 2004 23 2972 2981 1TWL Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001 2004-07-01 2004-11-23 Zhou, W.,Tempel, W.,Liu, Z.-J.,Chen, L.,Clancy Kelley, L.-L.,Dillard, B.D.,Hopkins, R.C.,Arendall III, W.B.,Rose, J.P.,ENEH, J.C.,HOPKINS, R.C.,JENNEY JR., F.E.,LEE, H.S.,LI, T.,POOLE II, F.L.,SHAH, C.,SUGAR, F.J.,ADAMS, M.W.W.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001 To be published 0 0 0 0 1X8V 15530358 Estriol-bound and ligand-free structures of sterol 14alpha-demethylase (CYP51) 2004-08-18 2004-11-23 Podust, L.M.,Yermalitskaya, L.V.,Lepesheva, G.I.,Podust, V.N.,Dalmasso, E.A.,Waterman, M.R. Estriol Bound and Ligand-free Structures of Sterol 14alpha-Demethylase. Structure 2004 12 1937 1945 1XG7 Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus 2004-09-16 2004-11-23 Chang, J.,Zhao, M.,Horanyi, P.,Xu, H.,Yang, H.,Liu, Z.-J.,Chen, L.,Zhou, W.,Habel, J.,Tempel, W.,Lee, D.,Lin, D.,Chang, S.-H.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,CHEN, C.-Y.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,ADAMS, M.W.W.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus To be published 0 0 0 0 1UPS 15688452 GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens 2003-10-10 2004-11-25 Tempel, W.,Liu, Z.J.,Horanyi, P.S.,Deng, L.,Lee, D.,Newton, M.G.,Rose, J.P.,Ashida, H.,Li, S.C.,Li, Y.T.,Wang, B.C. Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens. Proteins 2005 59 141 144 1XI6 Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001 2004-09-21 2004-11-30 Zhao, M.,Chang, J.C.,Zhou, W.,Chen, L.,Horanyi, P.,Xu, H.,Yang, H.,Liu, Z.-J.,Habel, J.E.,Lee, D.,Chang, S.-H.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001 To be published 0 0 0 0 1X9H 15518558 Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with fructose 6-phosphate 2004-08-21 2004-12-07 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. Structural basis for phosphomannose isomerase activity in phosphoglucose isomerase from Pyrobaculum aerophilum: a subtle difference between distantly related enzymes. Biochemistry 2004 43 14088 14095 1X9I 15518558 Crystal structure of Crystal structure of phosphoglucose/phosphomannose phosphoglucose/phosphomannoseisomerase from Pyrobaculum aerophilum in complex with glucose 6-phosphate 2004-08-21 2004-12-07 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. Structural basis for phosphomannose isomerase activity in phosphoglucose isomerase from Pyrobaculum aerophilum: a subtle difference between distantly related enzymes. Biochemistry 2004 43 14088 14095 1XO5 15574431 Crystal structure of CIB1, an EF-hand, integrin and kinase-binding protein 2004-10-05 2004-12-07 Gentry, H.R.,Singer, A.U.,Betts, L.,Yang, C.,Ferrara, J.D.,Sondek, J.,Parise, L.V. Structural and Biochemical Characterization of CIB1 Delineates a New Family of EF-hand-containing Proteins J.Biol.Chem. 2005 280 8407 8415 1XRG Conserved hypothetical protein from Clostridium thermocellum Cth-2968 2004-10-14 2004-12-14 Zhao, M.,Chang, J.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Tempel, W.,Lin, D.,Zhang, H.,Arendall III, W.B.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein from Clostridium thermocellum Cth-2968 To be published 0 0 0 0 1Y6J L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135 2004-12-06 2004-12-14 Chen, L.,Yang, H.,Kataeva, I.,Chen, L.R.,Tempel, W.,Lee, D.,Habel, J.,Zhou, W.,Lin, D.,Ljungdahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135 To be Published 0 0 0 0 1SL7 15689515 Crystal structure of calcium-loaded apo-obelin from Obelia longissima 2004-03-05 2004-12-28 Deng, L.,Vysotski, E.S.,Markova, S.V.,Liu, Z.J.,Lee, J.,Rose, J.,Wang, B.C. All three Ca2+-binding loops of photoproteins bind calcium ions: The crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci. 2005 14 663 675 1SL8 15689515 Calcium-loaded apo-aequorin from Aequorea victoria 2004-03-05 2004-12-28 Deng, L.,Vysotski, E.S.,Markova, S.V.,Liu, Z.J.,Lee, J.,Rose, J.,Wang, B.C. All three Ca2+-binding loops of photoproteins bind calcium ions: The crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci. 2005 14 663 675 1XX7 Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001 2004-11-04 2004-12-28 Chen, L.,Tempel, W.,Habel, J.,Zhou, W.,Nguyen, D.,Chang, S.-H.,Lee, D.,Kelley, L.-L.C.,Dillard, B.D.,Liu, Z.-J.,Bridger, S.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr, F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001 To be published 0 0 0 0 1S1F 15659395 Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-01-06 2005-01-11 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2 J.Biol.Chem. 2005 280 11599 11607 1S1F 15659395 Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-01-06 2005-01-11 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2 J.Biol.Chem. 2005 280 11599 11607 1YEM Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus 2004-12-28 2005-01-11 Yang, H.,Chang, J.,Shah, A.,Ng, J.D.,Liu, Z.-J.,Chen, L.,Lee, D.,Tempel, W.,Praissman, J.L.,Lin, D.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Jenney Jr., F.E.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus To be published 0 0 0 0 1XSN 15608652 Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP 2004-10-19 2005-01-18 Garcia-Diaz, M.,Bebenek, K.,Krahn, J.M.,Kunkel, T.A.,Pedersen, L.C. A closed conformation for the Pol lambda catalytic cycle. Nat.Struct.Mol.Biol. 2005 12 97 98 1SE6 15659395 Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-02-16 2005-01-25 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2. J.Biol.Chem. 2005 280 11599 11607 1T93 15659395 Evidence for Multiple Substrate Recognition and Molecular Mechanism of C-C reaction by Cytochrome P450 CYP158A2 from Streptomyces Coelicolor A3(2) 2004-05-14 2005-01-25 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2. J.Biol.Chem. 2005 280 11599 11607 1Y80 Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica 2004-12-10 2005-01-25 Liu, Z.-J.,Fu, Z.-Q.,Tempel, W.,Das, A.,Habel, J.,Zhou, W.,Chang, J.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Ljungdahl, L.,Rose, J.P.,Wang, B.-C. Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica To be published 0 0 0 0 1Y81 Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus 2004-12-10 2005-01-25 Zhao, M.,Chang, J.,Habel, J.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus To be published 0 0 0 0 1Y82 Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus 2004-12-10 2005-01-25 Horanyi, P.,Tempel, W.,Habel, J.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics (SECSG) Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus To be published 0 0 0 0 1YIS Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase 2005-01-12 2005-01-25 Symersky, J.,Schormann, N.,Lu, S.,Zhang, Y.,Karpova, E.,Qiu, S.,Huang, W.,Cao, Z.,Zhou, J.,Luo, M.,Arabshahi, A.,McKinstry, A.,Luan, C.-H.,Luo, D.,Johnson, D.,An, J.,Tsao, J.,Delucas, L.,Shang, Q.,Gray, R.,Li, S.,Bray, T.,Chen, Y.-J. Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase To be Published 0 0 0 0 1YB3 Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus 2004-12-19 2005-02-01 Habel, J.,Zhou, W.,Chang, J.,Zhao, M.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus To be published 0 0 0 0 1YBX Conserved hypothetical protein Cth-383 from Clostridium thermocellum 2004-12-21 2005-02-01 Tempel, W.,Chang, J.,Zhao, M.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. Conserved hypothetical protein Cth-383 from Clostridium thermocellum To be published 0 0 0 0 1YBY Conserved hypothetical protein Cth-95 from Clostridium thermocellum 2004-12-21 2005-02-01 Zhao, M.,Zhou, W.,Chang, J.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Lin, D.,Zhang, H.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. Conserved hypothetical protein Cth-95 from Clostridium thermocellum To be published 0 0 0 0 1YBZ Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001 2004-12-21 2005-02-01 Lee, D.,Chen, L.,Nguyen, D.,Dillard, B.D.,Tempel, W.,Habel, J.,Zhou, W.,Chang, S.-H.,Kelley, L.-L.C.,Liu, Z.-J.,Lin, D.,Zhang, H.,Praissman, J.,Bridger, S.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001 To be published 0 0 0 0 1TXF 15721240 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE IN COMPLEX WITH GLUTAMATE AT 2.1 ANGSTROM RESOLUTION 2004-07-04 2005-02-08 Mayer, M.L. Crystal structures of the GluR5 and GluR6 ligand binding cores: Molecular mechanisms underlying kainate receptor selectivity Neuron 2005 45 539 552 1YD7 Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus 2004-12-23 2005-02-08 Horanyi, P.,Florence, Q.,Zhou, W.,Chang, J.,Zhao, M.,Habel, J.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Tempel, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics (SECSG) Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus To be published 0 0 0 0 1YPQ 15695803 Human Oxidized Low Density Lipoprotein Receptor LOX-1 Dioxane Complex 2005-01-31 2005-02-08 Park, H.,Adsit, F.G.,Boyington, J.C. The 1.4 angstrom crystal structure of the human oxidized low density lipoprotein receptor lox-1. J.Biol.Chem. 2005 280 13593 13599 1YO6 Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans 2005-01-26 2005-02-15 Schormann, N.,Lu, S.,Symersky, J.,Karpova, E.,Zhang, Y.,Luo, D.,Zhou, Q.,Huang, W.,Luan, C.-H.,Gray, R.,Arabshahi, A.,McKinstry, A.,Qiu, S.,Cao, Z.,An, J.,Li, S.,Lin, G.,Tsao, J.,Johnson, D.,Luo, M.,Shang, Q.,Chen, Y.,Stinnett, M.,Bunzel, R.,Carson, M.,Bray, T.,DeLucas, L. Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans To be Published 0 0 0 0 1YQ1 Structural Genomics Of Caenorhabditis Elegans: glutathione S-Transferase 2005-01-31 2005-02-15 Lu, S.,Schorman, N.,Zhang, Y.,Symersky, J.,An, J.,Arabshahi, A.,Bunzel, R.,Cao, Z.,Carson, M.,Chen, Y.,Delucas, L.,Gray, R.,Huang, W.,Johnson, D.,Karpova, E.,Li, S.,Lin, G.,Luo, D.,Mckinstry, A.,Qiu, S.,Shang, Q.,Stinnett, M.,Tsao, J.,Zhou, Q.,Luan, Q.-H.,Luo, M. Structural Genomics of Caenorhabditis Elegans: glutathione S-Transferase To be Published 0 0 0 0 1X9D 15713668 Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue 2004-08-20 2005-02-22 Karaveg, K.,Siriwardena, A.,Tempel, W.,Liu, Z.J.,Glushka, J.,Wang, B.C.,Moremen, K.W. Mechanism of class 1 (glycosylhydrolase family 47) {alpha}-mannosidases involved in N-glycan processing and endoplasmic reticulum quality control. J.Biol.Chem. 2005 280 16197 16207 1YCY Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus 2004-12-23 2005-02-22 Huang, L.,Liu, Z.-J.,Lee, D.,Tempel, W.,Chang, J.,Zhao, M.,Habel, J.,Xu, H.,Chen, L.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus To be published 0 0 0 0 1YPY 15761054 Crystal Structure of Vaccinia Virus L1 protein 2005-01-31 2005-03-01 Su, H.P.,Garman, S.C.,Allison, T.J.,Fogg, C.,Moss, B.,Garboczi, D.N. The 1.51-Angstrom structure of the poxvirus L1 protein, a target of potent neutralizing antibodies. Proc.Natl.Acad.Sci.Usa 2005 102 4240 4245 1SKX 15705662 Structural Disorder in the Complex of Human PXR and the Macrolide Antibiotic Rifampicin 2004-03-05 2005-03-08 Chrencik, J.E.,Orans, J.O.,Moore, L.B.,Xue, Y.,Peng, L.,Collins, J.L.,Wisely, G.B.,Lambert, M.H.,Kliewer, S.A.,Redinbo, M.R. Structural disorder in the complex of human pregnane x receptor and the macrolide antibiotic rifampicin Mol.Endocrinol. 2005 19 1125 1134 1XL3 15701523 Complex structure of Y.pestis virulence Factors YopN and TyeA 2004-09-30 2005-03-22 Schubot, F.D.,Jackson, M.W.,Penrose, K.J.,Cherry, S.,Tropea, J.E.,Plano, G.V.,Waugh, D.S. Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis. J.Mol.Biol. 2005 346 1147 1161 1XTB 15689508 Crystal Structure of Rabbit Phosphoglucose Isomerase Complexed with Sorbitol-6-Phosphate 2004-10-21 2005-03-22 Lee, J.H.,Jeffery, C.J. The crystal structure of rabbit phosphoglucose isomerase complexed with D-sorbitol-6-phosphate, an analog of the open chain form of D-glucose-6-phosphate. Protein Sci. 2005 14 727 734 1YG9 15811379 The structure of mutant (N93Q) of bla g 2 2005-01-04 2005-03-22 Gustchina, A.,Li, M.,Wuenschmann, S.,Chapman, M.D.,Pomes, A.,Wlodawer, A. Crystal structure of cockroach allergen Bla g 2, an unusual zinc binding aspartic protease with a novel mode of self-inhibition. J.Mol.Biol. 2005 348 433 444 1Z2U The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance 2005-03-09 2005-03-22 Gavira, J.A.,DiGiamamarino, E.,Tempel, W.,Liu, Z.J.,Wang, B.C.,Meehan, E.,Ng, J.D. The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance To be published 0 0 0 0 1Z3D Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans 2005-03-11 2005-03-22 Gavira, J.A.,DiGiammarino, E.,Tempel, W.,Toh, D.,Liu, Z.J.,Wang, B.C.,Meehan, E.,Ng, J.D. Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans To be Published 0 0 0 0 1XEM 15796505 High Resolution Crystal Structure of Escherichia coli Zinc- Peptide Deformylase bound to formate 2004-09-10 2005-03-29 Jain, R.,Hao, B.,Liu, R.-P.,Chan, M.K. Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal J.Am.Chem.Soc. 2005 127 4558 4559 1W9G 15794639 Structure of ERH (Enhencer of Rudimentary Gene) 2004-10-13 2005-04-06 Wan, C.,Tempel, W.,Liu, Z.,Wang, B.-C.,Rose, R.B. Structure of the Conserved Transcriptional Repressor Enhancer of Rudimentary Homolog Biochemistry 2005 44 5017 0 1YM9 15807524 Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form 2005-01-20 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YMD 15807524 Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form 2005-01-20 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YMK 15807524 Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form 2005-01-21 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YML 15807524 Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form 2005-01-21 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YS0 15807524 Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the disulfide form 2005-02-05 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1Z8K X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770 2005-03-30 2005-04-12 Center for Eukaryotic Structural Genomics (CESG) X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770 To be published 0 0 0 0 1Z90 17178129 X-ray structure of gene product from arabidopsis thaliana at3g03250, a putative UDP-glucose pyrophosphorylase 2005-03-31 2005-04-12 McCoy, J.G.,Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,Bannen, R.M.,Kondrashov, D.A.,Phillips Jr., G.N. Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP. J.Mol.Biol. 2007 366 830 841 1U9I 15347809 Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites 2004-08-09 2005-04-19 Xu, Y.,Mori, T.,Pattanayek, R.,Pattanayek, S.,Egli, M.,Johnson, C.H. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses PROC.NATL.ACAD.SCI.USA 2004 101 13933 13938 1WY3 15894611 Chicken villin subdomain HP-35, K65(NLE), N68H, pH7.0 2005-02-04 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1XAO 15701512 Hsp40-Ydj1 dimerization domain 2004-08-26 2005-05-03 Wu, Y.,Li, J.,Jin, Z.,Fu, Z.,Sha, B. The crystal structure of the C-terminal fragment of yeast Hsp40 Ydj1 reveals novel dimerization motif for Hsp40 J.Mol.Biol. 2005 346 1005 1011 1YRF 15894611 Chicken villin subdomain HP-35, N68H, pH6.7 2005-02-03 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1YRI 15894611 Chicken villin subdomain HP-35, N68H, pH6.4 2005-02-03 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1YYL 15893666 crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b 2005-02-25 2005-05-03 Huang, C.C.,Stricher, F.,Martin, L.,Decker, J.M.,Majeed, S.,Barthe, P.,Hendrickson, W.A.,Robinson, J.,Roumestand, C.,Sodroski, J.,Wyatt, R.,Shaw, G.M.,Vita, C.,Kwong, P.D. Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth. Structure 2005 13 755 768 1YYM 15893666 crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b 2005-02-25 2005-05-03 Huang, C.C.,Stricher, F.,Martin, L.,Decker, J.M.,Majeed, S.,Barthe, P.,Hendrickson, W.A.,Robinson, J.,Roumestand, C.,Sodroski, J.,Wyatt, R.,Shaw, G.M.,Vita, C.,Kwong, P.D. Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth. Structure 2005 13 755 768 1ZGH Methionyl-tRNA formyltransferase from Clostridium thermocellum 2005-04-21 2005-05-03 Yang, H.,Kataeva, I.,Xu, H.,Zhao, M.,Chang, J.,Liu, Z.,Chen, L.,Tempel, W.,Habel, J.,Zhou, W.,Lee, D.,Lin, D.,Chang, S.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.,Southeast Collaboratory for Structural Genomics Methionyl-tRNA formyltransferase from Clostridium thermocellum To be published 0 0 0 0 1YW2 15837333 Mutated Mus Musculus P38 Kinase (mP38) 2005-02-16 2005-05-10 Laughlin, S.K.,Clark, M.P.,Djung, J.F.,Golebiowski, A.,Brugel, T.A.,Sabat, M.,Bookland, R.G.,Laufersweiler, M.J.,Vanrens, J.C.,Townes, J.A.,De, B.,Hsieh, L.C.,Xu, S.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of new isoxazolone based inhibitors of tumor necrosis factor-alpha (TNF-alpha) production. Bioorg.Med.Chem.Lett. 2005 15 2399 2403 1YWR 15837310 Crystal Structure Analysis of inactive P38 kinase domain in complex with a Monocyclic Pyrazolone Inhibitor 2005-02-18 2005-05-10 Golebiowski, A.,Townes, J.A.,Laufersweiler, M.J.,Brugel, T.A.,Clark, M.P.,Clark, C.M.,Djung, J.F.,Laughlin, S.K.,Sabat, M.P.,Bookland, R.G.,Vanrens, J.C.,De, B.,Hsieh, L.C.,Janusz, M.J.,Walter, R.L.,Webster, M.E.,Mekel, M.J. The development of monocyclic pyrazolone based cytokine synthesis inhibitors. Bioorg.Med.Chem.Lett. 2005 15 2285 2289 1YFJ 15882618 T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact 2005-01-02 2005-05-17 Horton, J.R.,Liebert, K.,Hattman, S.,Jeltsch, A.,Cheng, X. Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.) 2005 121 349 361 1YFL 15882618 T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base 2005-01-03 2005-05-17 Horton, J.R.,Liebert, K.,Hattman, S.,Jeltsch, A.,Cheng, X. Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.) 2005 121 349 361 1ZD0 Crystal structure of Pfu-542154 conserved hypothetical protein 2005-04-13 2005-05-17 Habel, J.E.,Liu, Z.J.,Horanyi, P.S.,Florence, Q.J.T.,Tempel, W.,Zhou, W.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.H.,Bereton, P.,Izumi, M.,Jenny Jr., F.E.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Rose, J.P.,Wang, B.C. Crystal structure of Pfu-542154 conserved hypothetical protein To be Published 0 0 0 0 2BF2 15882052 Crystal structure of native toluene-4-monooxygenase catalytic effector protein, T4moD 2004-12-03 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal Structures and Functional Studies of T4Mod, the Toluene 4-Monooxygenase Catalytic Effector Protein Biochemistry 2005 44 7131 0 2BF3 15882052 Crystal structure of a toluene 4-monooxygenase catalytic effector protein variant missing ten N-terminal residues (delta-N10 T4moD) 2004-12-03 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal Structures and Functional Studies of T4Mod, the Toluene 4-Monooxygenase Catalytic Effector Protein Biochemistry 2005 44 7131 0 2BF5 15882052 Crystal structure of a toluene 4-monooxygenase catalytic effector protein variant missing four N-terminal residues (delta-N4 T4moD) 2004-12-03 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal Structures and Functional Studies of T4Mod, the Toluene 4-Monooxygenase Catalytic Effector Protein Biochemistry 2005 44 7131 0 1ZNQ Crystal Structure of Human Liver GAPDH 2005-05-11 2005-05-24 Ismail, S.A.,Park, H.W. Crystal Structure Analysis of Human liver GAPDH To be Published 0 0 0 0 1ZTD Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus 2005-05-26 2005-06-07 Fu, Z.-Q.,Horanyi, P.,Florence, Q.,Liu, Z.-J.,Chen, L.,Lee, D.,Habel, J.,Xu, H.,Nguyen, D.,Chang, S.-H.,Zhou, W.,Zhang, H.,Jenney Jr., F.E.,Sha, B.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus To be Published 0 0 0 0 1V1T 16533050 Crystal structure of the PDZ tandem of human syntenin in complex with TNEYKV peptide 2004-04-23 2005-06-14 Grembecka, J.,Cierpicki, T.,Devedjiev, Y.,Derewenda, U.,Kang, B.S.,Bushweller, J.H.,Derewenda, Z.S. The Binding of the Pdz Tandem of Syntenin to Target Proteins. Biochemistry 2006 45 3674 0 1ZFN 15896804 Structural Analysis of Escherichia coli ThiF 2005-04-20 2005-06-14 Duda, D.M.,Walden, H.,Sfondouris, J.,Schulman, B.A. Structural Analysis of Escherichia Coli ThiF. J.Mol.Biol. 2005 349 774 786 1Z6F 15938610 Crystal structure of penicillin-binding protein 5 from E. coli in complex with a boronic acid inhibitor 2005-03-22 2005-06-21 Nicola, G.,Peddi, S.,Stefanova, M.,Nicholas, R.A.,Gutheil, W.G.,Davies, C. Crystal Structure of Escherichia coli Penicillin-Binding Protein 5 Bound to a Tripeptide Boronic Acid Inhibitor: A Role for Ser-110 in Deacylation. Biochemistry 2005 44 8207 8217 1Z7X 17350650 X-ray structure of human ribonuclease inhibitor complexed with ribonuclease I 2005-03-28 2005-06-21 Johnson, R.J.,McCoy, J.G.,Bingman, C.A.,Phillips Jr., G.N.,Raines, R.T. Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. J.Mol.Biol. 2007 368 434 449 1ZAO 15943813 Crystal Structure of A.fulgidus Rio2 Kinase Complexed With ATP and Manganese Ions 2005-04-06 2005-06-21 Laronde-Leblanc, N.,Guszczynski, T.,Copeland, T.,Wlodawer, A. Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. Febs J. 2005 272 2800 2810 1ZAR 15943813 Crystal Structure of A.fulgidus Rio2 Kinase Complexed With ADP and Manganese Ions 2005-04-06 2005-06-21 Laronde-Leblanc, N.,Guszczynski, T.,Copeland, T.,Wlodawer, A. Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. Febs J. 2005 272 2800 2810 1ZP8 15934050 HIV Protease with inhibitor AB-2 2005-05-16 2005-06-21 Brik, A.,Alexandratos, J.,Lin, Y.C.,Elder, J.H.,Olson, A.J.,Wlodawer, A.,Goodsell, D.S.,Wong, C.H. 1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors. Chembiochem 2005 6 1167 1169 2BQ3 15965231 DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 2005-04-27 2005-06-22 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem. 2005 280 29750 0 2BQR 15965231 DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 2005-04-27 2005-06-23 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem. 2005 280 29750 0 2BQU 15965231 DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 2005-04-28 2005-06-23 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem. 2005 280 29750 0 1U0Z N-Domain Of Grp94 Lacking The Charged Domain In Complex With Radicicol 2004-07-14 2005-07-05 Gewirth, D.T.,Immormino, R.M. N-Domain Of Grp94 Lacking The Charged Domain In Complex With Radicicol TO BE PUBLISHED 0 0 0 0 1WWI Crystal structure of ttk003001566 from Thermus Thermophilus HB8 2005-01-05 2005-07-05 Wang, H.,Murayama, K.,Terada, T.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ttk003001566 from Thermus Thermophilus HB8 TO BE PUBLISHED 0 0 0 0 1T5A 15996096 Human Pyruvate Kinase M2 2004-05-03 2005-07-12 Dombrauckas, J.D.,Santarsiero, B.D.,Mesecar, A.D. Structural basis for tumor pyruvate kinase M2 allosteric regulation and catalysis. Biochemistry 2005 44 9417 9429 1Y3A 16004878 Structure of G-Alpha-I1 bound to a GDP-selective peptide provides insight into guanine nucleotide exchange 2004-11-24 2005-07-12 Johnston, C.A.,Willard, F.S.,Jezyk, M.R.,Fredericks, Z.,Bodor, E.T.,Jones, M.B.,Blaesius, R.,Watts, V.J.,Harden, T.K.,Sondek, J.,Ramer, J.K.,Siderovski, D.P. Structure of G-Alpha-I1 bound to a GDP-selective peptide provides insight into guanine nucleotide exchange Structure 2005 7 1069 1080 1YKB 15983417 Crystal Structure of Insect Cell Expressed IL-22 2005-01-17 2005-07-12 Xu, T.,Logsdon, N.J.,Walter, M.R. Structure of insect-cell-derived IL-22. Acta Crystallogr.,Sect.D 2005 61 942 950 1ZBF 15989951 Crystal structure of B. halodurans RNase H catalytic domain mutant D132N 2005-04-08 2005-07-12 Nowotny, M.,Gaidamakov, S.A.,Crouch, R.J.,Yang, W. Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis. Cell(Cambridge,Mass.) 2005 121 1005 1016 1ZBI 15989951 Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid 2005-04-08 2005-07-12 Nowotny, M.,Gaidamakov, S.A.,Crouch, R.J.,Yang, W. Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis. Cell(Cambridge,Mass.) 2005 121 1005 1016 1ZBL 15989951 Bacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybrid 2005-04-08 2005-07-12 Nowotny, M.,Gaidamakov, S.A.,Crouch, R.J.,Yang, W. Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis. Cell(Cambridge,Mass.) 2005 121 1005 1016 2A13 19938152 X-ray structure of protein from Arabidopsis thaliana AT1G79260 2005-06-17 2005-07-12 Bianchetti, C.M.,Blouin, G.C.,Bitto, E.,Olson, J.S.,Phillips, G.N. 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J.Biol.Chem. 2006 281 15296 15303 2GHP 17320109 Crystal structure of the N-terminal 3 RNA binding domains of the yeast splicing factor Prp24 2006-03-27 2006-04-25 Bae, E.,Reiter, N.J.,Bingman, C.A.,Kwan, S.S.,Lee, D.,Phillips Jr., G.N.,Butcher, S.E.,Brow, D.A. Structure and interactions of the first three RNA recognition motifs of splicing factor prp24. J.Mol.Biol. 2007 367 1447 1458 2B4Q 16624803 Pseudomonas aeruginosa RhlG/NADP active-site complex 2005-09-26 2006-05-02 Miller, D.J.,Zhang, Y.-M.,Rock, C.O.,White, S.W. Structure of RhlG, an Essential beta-Ketoacyl Reductase in the Rhamnolipid Biosynthetic Pathway of Pseudomonas aeruginosa. J.Biol.Chem. 2006 281 18025 18032 2G6G 16618494 Crystal structure of MltA from Neisseria gonorrhoeae 2006-02-24 2006-05-02 Powell, A.J.,Liu, Z.J.,Nicholas, R.A.,Davies, C. Crystal Structures of the Lytic Transglycosylase MltA from N.gonorrhoeae and E.coli: Insights into Interdomain Movements and Substrate Binding. J.Mol.Biol. 2006 359 122 136 2GHM 16632356 Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-895449 2006-03-27 2006-05-02 Brugel, T.A.,Maier, J.A.,Clark, M.P.,Sabat, M.,Golebiowski, A.,Bookland, R.G.,Laufersweiler, M.J.,Laughlin, S.K.,Vanrens, J.C.,De, B.,Hsieh, L.C.,Mekel, M.J.,Janusz, M.J. Development of N-2,4-pyrimidine-N-phenyl-N'-phenyl ureas as inhibitors of tumor necrosis factor alpha (TNF-alpha) synthesis. Part 1. Bioorg.Med.Chem.Lett. 2006 16 3510 3513 2GNX X-ray structure of a hypothetical protein from Mouse Mm.209172 2006-04-11 2006-05-02 Phillips Jr., G.N.,McCoy, J.G.,Bitto, E.,Wesenberg, G.E.,Bingman, C.A.,Center for Eukaryotic Structural Genomics (CESG) X-ray structure of a hypothetical protein from Mouse Mm.209172 To be Published 0 0 0 0 2GQD The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus 2006-04-20 2006-05-02 Miller, D.J.,Zhang, Y.M.,Rock, C.O.,White, S.W. The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus To be Published 0 0 0 0 2D62 Crystal structure of multiple sugar binding transport ATP-binding protein 2005-11-08 2006-05-08 Lokanath, N.K.,Mizohata, E.,Yamaguchi-Sihta, E.,Chen, L.,Liu, Z.J.,Wang, B.C.,Kunishima, N. Crystal structure of multiple sugar binding transport ATP-binding protein To be Published 0 0 0 0 2G69 16569415 Structure of Unliganded HIV-1 Protease F53L Mutant 2006-02-24 2006-05-09 Liu, F.,Kovalevsky, A.Y.,Louis, J.M.,Boross, P.I.,Wang, Y.F.,Harrison, R.W.,Weber, I.T. Mechanism of Drug Resistance Revealed by the Crystal Structure of the Unliganded HIV-1 Protease with F53L Mutation. J.Mol.Biol. 2006 358 1191 1199 2GP4 Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis 2006-04-16 2006-05-09 Schormann, N.,Symersky, J.,Karpova, E.,Zhang, Y.,Lu, S.,Qiu, S.,Bunzel, R.,Luan, C.-H.,Huang, W.,Luo, M.,Tsao, J.,Johnson, D.,Carson, M.,Zhou, Q.,Luo, D.,Gray, R.,Cao, Z.,An, J.,Arabshahi, A.,Li, S.,Stinnett, M.,McKinstry, A.,Lin, G.,Shang, Q.,Chen, Y.,DeLucas, L. Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis To be Published 0 0 0 0 1ZLM 16946461 Crystal structure of the SH3 domain of human osteoclast stimulating factor 2005-05-06 2006-05-16 Chen, L.,Wang, Y.,Wells, D.,Toh, D.,Harold, H.,Zhou, J.,DiGiammarino, E.,Meehan, E.J. Structure of the SH3 domain of human osteoclast-stimulating factor at atomic resolution. Acta Crystallogr.,Sect.F 2006 62 844 848 2FUL 16616930 Crystal Structure of the C-terminal Domain of S. cerevisiae eIF5 2006-01-27 2006-05-23 Wei, Z.,Xue, Y.,Xu, H.,Gong, W. Crystal Structure of the C-terminal Domain of S.cerevisiae eIF5 J.Mol.Biol. 2006 359 1 9 2G02 16527981 Nisin cyclase 2006-02-10 2006-05-23 Li, B.,Yu, J.P.J.,Brunzelle, J.S.,Moll, G.N.,Van der Donk, W.A.,Nair, S.K. Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis Science 2006 311 1464 1467 2G02 16527981 Nisin cyclase 2006-02-10 2006-05-23 Li, B.,Yu, J.P.J.,Brunzelle, J.S.,Moll, G.N.,Van der Donk, W.A.,Nair, S.K. Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis Science 2006 311 1464 1467 2GTM 16750367 Mutated Mouse P38 MAP Kinase Domain in complex with Inhibitor PG-892579 2006-04-28 2006-05-23 Sabat, M.,Vanrens, J.C.,Clark, M.P.,Brugel, T.A.,Maier, J.,Bookland, R.G.,Laufersweiler, M.J.,Laughlin, S.K.,Golebiowski, A.,De, B.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of novel C-2, C-8, and N-9 trisubstituted purines as inhibitors of TNF-alpha production. Bioorg.Med.Chem.Lett. 2006 16 4360 4365 2FAU 16732284 Crystal structure of human vps26 2005-12-08 2006-05-30 Shi, H.,Rojas, R.,Bonifacino, J.S.,Hurley, J.H. The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Nat.Struct.Mol.Biol. 2006 13 540 548 2GSK 16741124 Structure of the BtuB:TonB Complex 2006-04-26 2006-06-13 Shultis, D.D.,Purdy, M.D.,Banchs, C.N.,Wiener, M.C. Outer membrane active transport: structure of the BtuB:TonB complex Science 2006 312 1396 1399 2H02 16759857 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-05-13 2006-06-13 Amarasinghe, K.K.,Evdokimov, A.G.,Xu, K.,Clark, C.M.,Maier, M.B.,Srivastava, A.,Colson, A.O.,Gerwe, G.S.,Stake, G.E.,Howard, B.W.,Pokross, M.E.,Gray, J.L.,Peters, K.G. Design and synthesis of potent, non-peptidic inhibitors of HPTPbeta. Bioorg.Med.Chem.Lett. 2006 16 4252 4256 2H03 16759857 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-05-13 2006-06-13 Amarasinghe, K.K.,Evdokimov, A.G.,Xu, K.,Clark, C.M.,Maier, M.B.,Srivastava, A.,Colson, A.O.,Gerwe, G.S.,Stake, G.E.,Howard, B.W.,Pokross, M.E.,Gray, J.L.,Peters, K.G. Design and synthesis of potent, non-peptidic inhibitors of HPTPbeta. Bioorg.Med.Chem.Lett. 2006 16 4252 4256 2GW1 16767096 Crystal Structure of the Yeast Tom70 2006-05-03 2006-06-27 Wu, Y.,Sha, B. Crystal structure of yeast mitochondrial outer membrane translocon member Tom70p. Nat.Struct.Mol.Biol. 2006 13 589 593 2HAV 16793765 Apo-Human Serum Transferrin (Glycosylated) 2006-06-13 2006-06-27 Wally, J.,Halbrooks, P.J.,Vonrhein, C.,Rould, M.A.,Everse, S.J.,Mason, A.B.,Buchanan, S.K. The Crystal Structure of Iron-free Human Serum Transferrin Provides Insight into Inter-lobe Communication and Receptor Binding. J.Biol.Chem. 2006 281 24934 24944 2HBT Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor 2006-06-14 2006-06-27 Evdokimov, A.G.,Walter, R.L.,Mekel, M.,Pokross, M.E.,Kawamoto, R.,Boyer, A. Crystal structure of HIF prolyl hydroxylase in complex with a biologically active inhibitor To be Published 0 0 0 0 2HBU Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor 2006-06-14 2006-06-27 Evdokimov, A.G.,Walter, R.L.,Mekel, M.,Pokross, M.E.,Kawamoto, R.,Boyer, A. Crystal structure of HIF prolyl hydroxylase in complex with a biologically active inhibitor To be Published 0 0 0 0 2HC1 17139078 Engineered catalytic domain of protein tyrosine phosphatase HPTPbeta. 2006-06-14 2006-06-27 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2HC2 17139078 Engineered protein tyrosine phosphatase beta catalytic domain 2006-06-15 2006-06-27 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2BVJ 16825192 Ligand-free structure of cytochrome P450 PikC (CYP107L1) 2005-06-28 2006-07-03 Sherman, D.H.,Li, S.,Yermalitskaya, L.V.,Kim, Y.,Smith, J.A.,Waterman, M.R.,Podust, L.M. The Structural Basis for Substrate Anchoring, Active Site Selectivity, and Product Formation by P450 Pikc from Streptomyces Venezuelae. J.Biol.Chem. 2006 281 26289 0 2C6H 16825192 Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1) 2005-11-09 2006-07-03 Sherman, D.H.,Li, S.,Yermalitskaya, L.V.,Kim, Y.,Smith, J.A.,Waterman, M.R.,Podust, L.M. The Structural Basis for Substrate Anchoring, Active Site Selectivity, and Product Formation by P450 Pikc from Streptomyces Venezuelae. J.Biol.Chem. 2006 281 26289 0 1ZYU 16834327 Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate and amppcp at 2.85 angstrom resolution 2005-06-11 2006-07-11 Gan, J.H.,Gu, Y.J.,Li, Y.,Yan, H.G.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue Biochemistry 2006 45 8539 8545 2GTN 16750367 Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-951717 2006-04-28 2006-07-11 Sabat, M.,Vanrens, J.C.,Clark, M.P.,Brugel, T.A.,Maier, J.,Bookland, R.G.,Laufersweiler, M.J.,Laughlin, S.K.,Golebiowski, A.,De, B.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of novel C-2, C-8, and N-9 trisubstituted purines as inhibitors of TNF-alpha production. Bioorg.Med.Chem.Lett. 2006 16 4360 4365 2BPO Crystal structure of the yeast CPR triple mutant: D74G, Y75F, K78A. 2005-04-21 2006-07-13 Yermalitskaya, L.V.,Kim, Y.,Waterman, M.R.,Podust, L.M. Crystal Structure of the Yeast Cpr Triple Mutant: D74G, Y75F, K78A. To be Published 0 0 0 0 2CDU 16893166 The Crystal Structure of Water-forming NAD(P)H Oxidase from Lactobacillus sanfranciscensis 2006-01-28 2006-07-17 Lountos, G.T.,Jiang, R.,Wellborn, W.B.,Thaler, T.L.,Bommarius, A.S.,Orville, A.M. The Crystal Structure of Nad(P)H Oxidase from Lactobacillus Sanfranciscensis: Insights Into the Conversion of O(2) Into Two Water Molecules by the Flavoenzyme. Biochemistry 2006 45 9648 0 2B3B 16904687 Thermus thermophilus Glucose/Galactose Binding Protein With Bound Glucose 2005-09-20 2006-07-18 Cuneo, M.J.,Changela, A.,Warren, J.J.,Beese, L.S.,Hellinga, H.W. The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. J.Mol.Biol. 2006 362 259 270 2B3F 16904687 Thermus thermophilus Glucose/Galactose Binding Protein Bound With Galactose 2005-09-20 2006-07-18 Cuneo, M.J.,Changela, A.,Warren, J.J.,Beese, L.S.,Hellinga, H.W. The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. J.Mol.Biol. 2006 362 259 270 2G1J 16834327 Crystal structure of Mycobacterium tuberculosis Shikimate Kinase at 2.0 angstrom resolution 2006-02-14 2006-07-18 Gan, J.,Gu, Y.,Li, Y.,Yan, H.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue. Biochemistry 2006 45 8539 8545 2G1K 16834327 Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate at 1.75 angstrom resolution 2006-02-14 2006-07-18 Gan, J.,Gu, Y.,Li, Y.,Yan, H.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue. Biochemistry 2006 45 8539 8545 2H2U 16835225 Crystal structure of the E130Y mutant of human soluble calcium-activated nucleotidase (SCAN) with calcium ion 2006-05-19 2006-07-18 Yang, M.,Horii, K.,Herr, A.B.,Kirley, T.L. Calcium-dependent dimerization of human soluble calcium activated nucleotidase: characterization of the dimer interface. J.Biol.Chem. 2006 281 28307 28317 2GTY 16843894 Crystal structure of unliganded griffithsin 2006-04-28 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2GUD 16843894 Crystal structure of a complex of griffithsin with mannose at 0.94 A resolution 2006-04-29 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2GUX 16843894 Selenomethionine derivative of griffithsin 2006-05-01 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2F9T 16905099 Structure of the type III CoaA from Pseudomonas aeruginosa 2005-12-06 2006-08-22 Hong, B.S.,Yun, M.K.,Zhang, Y.M.,Chohnan, S.,Rock, C.O.,White, S.W.,Jackowski, S.,Park, H.W.,Leonardi, R. Prokaryotic Type II and Type III Pantothenate Kinases: The Same Monomer Fold Creates Dimers with Distinct Catalytic Properties. Structure 2006 14 1251 1261 2F9W 16905099 Structure of the type III CoaA from Pseudomonas aeruginosa 2005-12-06 2006-08-22 Hong, B.S.,Yun, M.K.,Zhang, Y.M.,Chohnan, S.,Rock, C.O.,White, S.W.,Jackowski, S.,Park, H.W.,Leonardi, R. Prokaryotic Type II and Type III Pantothenate Kinases: The Same Monomer Fold Creates Dimers with Distinct Catalytic Properties. Structure 2006 14 1251 1261 2GFE 16855092 Crystal structure of the GluR2 A476E S673D Ligand Binding Core Mutant at 1.54 Angstroms Resolution 2006-03-21 2006-08-22 Weston, M.C.,Gertler, C.,Mayer, M.L.,Rosenmund, C. Interdomain interactions in AMPA and kainate receptors regulate affinity for glutamate. J.Neurosci. 2006 26 7650 7658 2GIC 16778022 Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complex 2006-03-28 2006-08-22 Green, T.J.,Zhang, X.,Wertz, G.W.,Luo, M. Structure of the vesicular stomatitis virus nucleoprotein-RNA complex unveils how the RNA is sequestered Science 2006 313 357 360 2HLE 16867992 Structural and biophysical characterization of the EPHB4-EPHRINB2 protein protein interaction and receptor specificity. 2006-07-06 2006-08-22 Chrencik, J.E.,Brooun, A.,Kraus, M.L.,Recht, M.I.,Kolatkar, A.R.,Han, G.W.,Seifert, J.M.,Widmer, H.,Auer, M.,Kuhn, P. Structural and Biophysical Characterization of the EphB4-EphrinB2 Protein-Protein Interaction and Receptor Specificity. J.Biol.Chem. 2006 281 28185 28192 2FYN 16924113 Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex 2006-02-08 2006-08-29 Esser, L.,Gong, X.,Yang, S.,Yu, L.,Yu, C.A.,Xia, D. Surface-modulated motion switch: Capture and release of iron-sulfur protein in the cytochrome bc1 complex. Proc.Natl.Acad.Sci.Usa 2006 103 13045 13050 2FYN 16924113 Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex 2006-02-08 2006-08-29 Esser, L.,Gong, X.,Yang, S.,Yu, L.,Yu, C.A.,Xia, D. Surface-modulated motion switch: Capture and release of iron-sulfur protein in the cytochrome bc1 complex. Proc.Natl.Acad.Sci.Usa 2006 103 13045 13050 2H6F 16893176 Protein Farnesyltransferase Complexed with a Farnesylated DDPTASACVLS Peptide Product at 1.5A Resolution 2006-05-31 2006-08-29 Terry, K.L.,Casey, P.J.,Beese, L.S. Conversion of protein farnesyltransferase to a geranylgeranyltransferase. Biochemistry 2006 45 9746 9755 2HV2 Crystal Structure of Conserved Protein of Unknown Function from Enterococcus faecalis V583 at 2.4 A Resolution, Probable N-Acyltransferase 2006-07-27 2006-08-29 Qiu, Y.,Tereshko, V.A.,Kossiakoff, A.A.,Joachimiak, A. Crystal structure of conserved hypothetical protein from Enterococcus faecalis V583 at 2.4 A resolution. To be Published 0 0 0 0 2I2O 20229607 Crystal Structure of an eIF4G-like Protein from Danio rerio 2006-08-16 2006-08-29 Bae, E.,Bitto, E.,Bingman, C.A.,McCoy, J.G.,Wesenberg, G.E.,Phillips, G.N. Crystal structure of an eIF4G-like protein from Danio rerio. Proteins 2010 78 1803 1806 2I3C 17194761 Crystal Structure of an Aspartoacylase from Homo Sapiens 2006-08-17 2006-08-29 Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,McCoy, J.G.,Phillips, G.N. Structure of aspartoacylase, the brain enzyme impaired in Canavan disease. Proc.Natl.Acad.Sci.Usa 2007 104 456 461 2I3F Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria 2006-08-18 2006-08-29 McCoy, J.G.,Wesenberg, G.E.,Phillips Jr., G.N.,Bitto, E.,Bingman, C.A.,Center for Eukaryotic Structural Genomics (CESG) Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria To be Published 0 0 0 0 2I3R 17139078 Engineered catalytic domain of protein tyrosine phosphatase HPTPbeta 2006-08-20 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I3U 17139078 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-08-20 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4E 17139078 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4G 17139078 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with a sulfamic acid (soaking experiment) 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4H 17139078 Structural studies of protein tyrosine phosphatase beta catalytic domain co-crystallized with a sulfamic acid inhibitor 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2FMX 16899220 An open conformation of switch I revealed by Sar1-GDP crystal structure at low Mg(2+) 2006-01-10 2006-09-05 Rao, Y.,Bian, C.,Yuan, C.,Li, Y.,Chen, L.,Ye, X.,Huang, Z.,Huang, M. An open conformation of switch I revealed by Sar1-GDP crystal structure at low Mg(2+) Biochem.Biophys.Res.Commun. 2006 348 908 915 2GK2 16929097 Crystal structure of the N terminal domain of human CEACAM1 2006-03-31 2006-09-05 Fedarovich, A.,Tomberg, J.,Nicholas, R.A.,Davies, C. Structure of the N-terminal domain of human CEACAM1: binding target of the opacity proteins during invasion of Neisseria meningitidis and N. gonorrhoeae. Acta Crystallogr.,Sect.D 2006 62 971 979 2HK5 16997556 Hck Kinase in Complex with Lck targetted Inhibitor PG-1009247 2006-07-03 2006-09-05 Sabat, M.,VanRens, J.C.,Laufersweiler, M.J.,Brugel, T.A.,Maier, J.,Golebiowski, A.,De, B.,Easwaran, V.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Evdokimov, A.,Janusz, M.J. The development of 2-benzimidazole substituted pyrimidine based inhibitors of lymphocyte specific kinase (Lck). Bioorg.Med.Chem.Lett. 2006 16 5973 5977 2I5X 17139078 Engineering the PTPbeta catalytic domain with improved crystallization properties 2006-08-26 2006-09-05 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2HIQ Crystal structure of JW1657 from Escherichia coli 2006-06-29 2006-09-12 Chen, L.Q.,Chen, L.R.,Liu, Z.-J.,Temple, W.,Lee, D.,Chang, S.-H.,Rose, J.P.,Ebihara, A.,Wang, B.-C. Crystal structure of JW1657 from Escherichia coli at 2.0A resolution To be Published 0 0 0 0 2HPV Crystal structure of FMN-Dependent azoreductase from Enterococcus faecalis 2006-07-17 2006-09-12 Liu, Z.J.,Chen, H.,Chen, L.,Shah, N.,Rose, J.P.,Wang, B.C. Crystal Structure of Fmn-Dependent Azoreductase from Enterococcus faecalis at 2.00 A resolution To be Published 0 0 0 0 2HQ1 Crystal Structure of ORF 1438 a putative Glucose/ribitol dehydrogenase from Clostridium thermocellum 2006-07-18 2006-09-12 Li, Y.,Shaw, N.,Xu, H.,Cheng, C.,Chen, L.,Liu, Z.J.,ROSE, J.P.,WANG, B.C.,Southeast Collaboratory for Structural Genomics Crystal Structure of ORF 1438 a putative Glucose/ ribitol dehydrogenase from Clostridium thermocellum To be Published 0 0 0 0 2HQ8 18385886 Crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo form 2006-07-18 2006-09-12 Stepanyuk, G.A.,Liu, Z.J.,Markova, S.S.,Frank, L.A.,Lee, J.,Vysotski, E.S.,Wang, B.C. Crystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein. PHOTOCHEM.PHOTOBIOL.SCI. 2008 7 442 447 2I62 Mouse Nicotinamide N-methyltransferase 2006-08-27 2006-09-12 Wu, H.,Min, J.,Zeng, H.,Loppnau, P.,Weigelt, J.,Sundstrom, M.,Arrowsmith, C.H.,Edwards, A.M.,Bochkarev, A.,Plotnikov, A.N. The Crystal Structure of Mouse Nicotinamide N-methyltransferase in complex with SAH To be Published 0 0 0 0 2I7Q Crystal structure of Human Choline Kinase A 2006-08-31 2006-09-12 Rabeh, W.M.,Tempel, W.,Nedyalkova, L.,Wasney, G.,Landry, R.,Arrowsmith, C.H.,Edwards, A.M.,Sundstrom, M.,Weigelt, J.,Bochkarev, A.,Park, H. Crystal structure of Human Choline Kinase A To be Published 0 0 0 0 2B26 16737444 The crystal structure of the protein complex of yeast Hsp40 Sis1 and Hsp70 Ssa1 2005-09-16 2006-09-19 Li, J.,Wu, Y.,Qian, X.,Sha, B. Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex. Biochem.J. 2006 398 353 360 2FSE 16951351 Crystallographic structure of a rheumatoid arthritis MHC susceptibility allele, HLA-DR1 (DRB1*0101), complexed with the immunodominant determinant of human type II collagen 2006-01-22 2006-09-19 Rosloniec, E.F.,Ivey, R.A.,Whittington, K.B.,Kang, A.H.,Park, H.W. Crystallographic Structure of a Rheumatoid Arthritis MHC Susceptibility Allele, HLA-DR1 (DRB1*0101), Complexed with the Immunodominant Determinant of Human Type II Collagen. J.Immunol. 2006 177 3884 3892 2H5I 16781734 Crystal structure of caspase-3 with inhibitor Ac-DEVD-Cho 2006-05-26 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2H5J 16781734 Crystal strusture of caspase-3 with inhibitor Ac-DMQD-Cho 2006-05-26 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2H65 16781734 Crystal strusture of caspase-3 with inhibitor Ac-VDVAD-Cho 2006-05-30 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2HFP 16919947 Crystal Structure of PPAR Gamma with N-sulfonyl-2-indole carboxamide ligands 2006-06-25 2006-09-19 Hopkins, C.R.,O'neil, S.V.,Laufersweiler, M.C.,Wang, Y.,Pokross, M.,Mekel, M.,Evdokimov, A.,Walter, R.,Kontoyianni, M.,Petrey, M.E.,Sabatakos, G.,Roesgen, J.T.,Richardson, E.,Demuth Jr., T.P. Design and synthesis of novel N-sulfonyl-2-indole carboxamides as potent PPAR-gamma binding agents with potential application to the treatment of osteoporosis. Bioorg.Med.Chem.Lett. 2006 16 5659 5663 2HQ4 Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii 2006-07-18 2006-09-19 Li, Y.,Marshall, M.,Chang, J.,Zhao, M.,Zhang, M.,Xu, H.,LIU, Z.J.,ROSE, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii To be Published 0 0 0 0 2ID5 17005555 Crystal Structure of the Lingo-1 Ectodomain 2006-09-14 2006-09-26 Mosyak, L.,Wood, A.,Dwyer, B.,Buddha, M.,Johnson, M.,Aulabaugh, A.,Zhong, X.,Presman, E.,Benard, S.,Kelleher, K.,Wilhelm, J.,Stahl, M.L.,Kriz, R.,Gao, Y.,Cao, Z.,Ling, H.P.,Pangalos, M.N.,Walsh, F.S.,Somers, W.S. The structure of the Lingo-1 ectodomain, a module implicated in central nervous system repair inhibition. J.Biol.Chem. 2006 281 36378 36390 2HS1 16962136 Ultra-high resolution X-ray crystal structure of HIV-1 protease V32I mutant with TMC114 (darunavir) inhibitor 2006-07-20 2006-10-03 Kovalevsky, A.Y.,Liu, F.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114. J.Mol.Biol. 2006 363 161 173 2HS2 16962136 Crystal structure of M46L mutant of HIV-1 protease complexed with TMC114 (darunavir) 2006-07-20 2006-10-03 Kovalevsky, A.Y.,Liu, F.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114. J.Mol.Biol. 2006 363 161 173 2ICY 17178129 Crystal Structure of a Putative UDP-glucose Pyrophosphorylase from Arabidopsis Thaliana with Bound UDP-glucose 2006-09-13 2006-10-03 McCoy, J.G.,Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,Bannen, R.M.,Kondrashov, D.A.,Phillips Jr., G.N. Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP. J.Mol.Biol. 2007 366 830 841 2IDW 15066436 Crystal structure analysis of HIV-1 protease mutant V82A with a potent non-peptide inhibitor (UIC-94017) 2006-09-15 2006-10-03 Tie, Y.,Boross, P.I.,Wang, Y.F.,Gaddis, L.,Hussain, A.K.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. 2004 338 341 352 2IEN 15066436 Crystal structure analysis of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) 2006-09-19 2006-10-03 Tie, Y.,Boross, P.I.,Wang, Y.F.,Gaddis, L.,Hussain, A.K.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. 2004 338 341 352 2IEO 15066436 Crystal structure analysis of HIV-1 protease mutant I84V with a potent non-peptide inhibitor (UIC-94017) 2006-09-19 2006-10-03 Tie, Y.,Boross, P.I.,Wang, Y.F.,Gaddis, L.,Hussain, A.K.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. 2004 338 341 352 2CKP 17007874 Crystal structure of Human Choline Kinase alpha-2 in complex with ADP 2006-04-20 2006-10-04 Malito, E.,Sekulic, N.,Too, W.C.,Konrad, M.,Lavie, A. Elucidation of Human Choline Kinase Crystal Structures in Complex with the Products Adp or Phosphocholine. J.Mol.Biol. 2006 364 136 0 2CKQ 17007874 Crystal structure of Human Choline Kinase alpha 2 in complex with Phosphocholine 2006-04-20 2006-10-04 Malito, E.,Sekulic, N.,Too, W.C.,Konrad, M.,Lavie, A. Elucidation of Human Choline Kinase Crystal Structures in Complex with the Products Adp or Phosphocholine. J.Mol.Biol. 2006 364 136 0 2HQX Crystal structure of human P100 tudor domain conserved region 2006-07-19 2006-10-10 Zhao, M.,Liu, Z.J.,Xu, H.,Yang, J.,Silvennoinen, O.,Wang, B.C. Crystal Structure of Human P100 Tudor Domain Conserved Region To be Published 0 0 0 0 2I0X Hypothetical protein PF1117 from Pyrococcus furiosus 2006-08-11 2006-10-10 Chen, L.Q.,Fu, Z.-Q.,Hwang, J.,Chang, J.,Chen, L.,Wang, Y.,Zhang, H.,Liu, Z.-J.,Rose, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Crystal Structure of Hypothetical Protein Pf1117 from Pyrococcus furiosus To be Published 0 0 0 0 2I5Y 18619974 Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B 2006-08-26 2006-10-10 Stricher, F.,Huang, C.C.,Descours, A.,Duquesnoy, S.,Combes, O.,Decker, J.M.,Kwon, Y.D.,Lusso, P.,Shaw, G.M.,Vita, C.,Kwong, P.D.,Martin, L. Combinatorial optimization of a CD4-mimetic miniprotein and cocrystal structures with HIV-1 gp120 envelope glycoprotein. J.Mol.Biol. 2008 382 510 524 2I60 18619974 Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B 2006-08-26 2006-10-10 Stricher, F.,Huang, C.C.,Descours, A.,Duquesnoy, S.,Combes, O.,Decker, J.M.,Kwon, Y.D.,Lusso, P.,Shaw, G.M.,Vita, C.,Kwong, P.D.,Martin, L. Combinatorial optimization of a CD4-mimetic miniprotein and cocrystal structures with HIV-1 gp120 envelope glycoprotein. J.Mol.Biol. 2008 382 510 524 2ID8 17139083 Crystal structure of Proteinase K 2006-09-14 2006-10-10 Wang, J.,Dauter, M.,Dauter, Z. What can be done with a good crystal and an accurate beamline? Acta Crystallogr.,Sect.D 2006 62 1475 1483 2IFU 17634982 Crystal Structure of a Gamma-SNAP from Danio rerio 2006-09-21 2006-10-10 Bitto, E.,Bingman, C.A.,Kondrashov, D.A.,McCoy, J.G.,Bannen, R.M.,Wesenberg, G.E.,Phillips, G.N. Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family. Proteins 2008 70 93 104 2IG7 Crystal structure of Human Choline Kinase B 2006-09-22 2006-10-10 Rabeh, W.M.,Tempel, W.,Nedyalkova, L.,Wasney, G.,Landry, R.,Vedadi, M.,Arrowsmith, C.H.,Edwards, A.M.,Sundstrom, M.,Weigelt, J.,Bochkarev, A.,Park, H. Crystal structure of Human Choline Kinase B To be Published 0 0 0 0 2IL1 Crystal structure of a predicted human GTPase in complex with GDP 2006-10-02 2006-10-10 Wang, J.,Shen, Y.,Tempel, W.,Landry, R.,Arrowsmith, C.H.,Edwards, A.M.,Sundstrom, M.,Weigelt, J.,Bochkarev, A.,Park, H. Crystal structure of a predicted human GTPase in complex with GDP To be Published 0 0 0 0 2HR5 PF1283- Rubrerythrin from Pyrococcus furiosus iron bound form 2006-07-19 2006-10-17 Dillard, B.D.,Clarkson, S.M.,Strand, K.R.,Ruble, J.R.,Chen, L.,Liu, Z.J.,Jenney Jr., F.E.,Adams, M.W.W.,Rose, J.P.,Wang, B.C. Crystal structure of iron bound Rubrerythrin from Pyrococcus Furiosus To be Published 0 0 0 0 2F6P 17291527 BenM effector binding domain- SeMet derivative 2005-11-29 2006-10-31 Ezezika, O.C.,Haddad, S.,Clark, T.J.,Neidle, E.L.,Momany, C. Distinct Effector-binding Sites Enable Synergistic Transcriptional Activation by BenM, a LysR-type Regulator. J.Mol.Biol. 2007 367 616 629 2IA0 Transcriptional Regulatory Protein PF0864 From Pyrococcus Furiosus a Member of the ASNC Family (PF0864) 2006-09-06 2006-10-31 Yang, H.,Chang, J.,Liu, Z.J.,Rose, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Crystal Structure of the Transcriptional Regulatory Protein PF0864: an Asnc Family member from Pyrococcus Furiosus To be Published 0 0 0 0 2IC7 Crystal Structure of Maltose Transacetylase from Geobacillus kaustophilus 2006-09-12 2006-11-07 Liu, Z.J.,Li, Y.,Chen, L.,Zhu, J.,Rose, J.P.,Ebihara, A.,Yokoyama, S.,Wang, B.C. Crystal Structure of Maltose Transacetylase From Geobacillus kaustophilus at 1.78 Angstrom Resolution To be Published 0 0 0 0 2ICU Crystal Structure of Hypothetical Protein YedK From Escherichia coli 2006-09-13 2006-11-07 Chen, L.,Liu, Z.J.,Li, Y.,Zhao, M.,Rose, J.,Ebihara, A.,Yokoyama, S.,Wang, B.C. Crystal Structure of Hypothetical Protein YedK From Escherichia coli To be Published 0 0 0 0 2J30 17073446 The Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)caspase-3 2006-08-17 2006-11-08 Feeney, B.,Pop, C.,Swartz, P.,Mattos, C.,Clark, A.C. Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)Caspase-3. Biochemistry 2006 45 13249 0 2J31 17073446 The Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of(Pro)caspase-3 2006-08-17 2006-11-08 Feeney, B.,Pop, C.,Swartz, P.,Mattos, C.,Clark, A.C. Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)Caspase-3. Biochemistry 2006 45 13249 0 2J32 17073446 The Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of(Pro)caspase-3 2006-08-17 2006-11-08 Feeney, B.,Pop, C.,Swartz, P.,Mattos, C.,Clark, A.C. Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)Caspase-3. Biochemistry 2006 45 13249 0 2J33 17073446 The Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)caspase-3 2006-08-17 2006-11-08 Feeney, B.,Pop, C.,Swartz, P.,Mattos, C.,Clark, A.C. Role of Loop Bundle Hydrogen Bonds in the Maturation and Activity of (Pro)Caspase-3. Biochemistry 2006 45 13249 0 2FAT 17101149 An anti-urokinase plasminogen activator receptor (UPAR) antibody: Crystal structure and binding epitope 2005-12-07 2006-11-14 Li, Y.,Parry, G.,Chen, L.,Callahan, J.A.,Shaw, D.E.,Meehan, E.J.,Mazar, A.P.,Huang, M. An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope J.Mol.Biol. 2007 365 1117 1129 2GWW 17088427 Human vinculin (head domain, Vh1, residues 1-258) in complex with Shigella's IpaA vinculin binding site (residues 602-633) 2006-05-07 2006-11-14 Izard, T.,Tran Van Nhieu, G.,Bois, P.R. Shigella applies molecular mimicry to subvert vinculin and invade host cells. J.Cell Biol. 2006 175 465 475 2IDG Crystal Structure of hypothetical protein AF0160 from Archaeoglobus fulgidus 2006-09-15 2006-11-14 Zhao, M.,Zhang, M.,Chang, J.,Chen, L.,Xu, H.,Li, Y.,Liu, Z.J.,Rose, J.P.,Wang, B.C. Crystal structure of Hypothetical Protein AF0160 from Archaeoglobus fulgidus at 2.69 Angstrom resolution To be Published 0 0 0 0 2IEL CRYSTAL STRUCTURE OF TT0030 from Thermus Thermophilus 2006-09-19 2006-11-14 Zhu, J.,Huang, J.,Stepanyuk, G.,Chen, L.,Chang, J.,Zhao, M.,Xu, H.,Liu, Z.J.,Rose, J.P.,Wang, B.C. CRYSTAL STRUCTURE OF TT0030 from Thermus Thermophilus AT 1.6 ANGSTROMS RESOLUTION To be Published 0 0 0 0 2IOL 17060447 Crystal structure of the C-terminal MA3 domain of Pdcd4 (mouse); form 1 2006-10-10 2006-11-14 Laronde-Leblanc, N.,Santhanam, A.N.,Baker, A.R.,Wlodawer, A.,Colburn, N.H. Structural basis for inhibition of translation by the tumor suppressor pdcd4. Mol.Cell.Biol. 2007 27 147 156 2IOS 17060447 Crystal structure of the C-terminal MA3 domain of Pdcd4 (mouse); form 3 2006-10-10 2006-11-14 Laronde-Leblanc, N.,Santhanam, A.N.,Baker, A.R.,Wlodawer, A.,Colburn, N.H. Structural basis for inhibition of translation by the tumor suppressor pdcd4. Mol.Cell.Biol. 2007 27 147 156 2NRA 17124167 Crystal structure of Pi initiator protein in complex with iteron DNA 2006-11-01 2006-11-14 Swan, M.K.,Bastia, D.,Davies, C. Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc.Natl.Acad.Sci.Usa 2006 103 18481 18486 2G1P 16524590 Structure of E. coli DNA adenine methyltransferase (DAM) 2006-02-14 2006-11-21 Horton, J.R.,Liebert, K.,Bekes, M.,Jeltsch, A.,Cheng, X. Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase. J.Mol.Biol. 2006 358 559 570 2H11 17243178 Amino-terminal Truncated Thiopurine S-Methyltransferase Complexed with S-Adenosyl-L-Homocysteine 2006-05-15 2006-11-21 Wu, H.,Horton, J.R.,Battaile, K.,Allali-Hassani, A.,Martin, F.,Zeng, H.,Loppnau, P.,Vedadi, M.,Bochkarev, A.,Plotnikov, A.N.,Cheng, X. Structural basis of allele variation of human thiopurine-S-methyltransferase. Proteins 2007 67 198 208 2HKD 17093048 The crystal structure of engineered OSPA 2006-07-03 2006-11-21 Makabe, K.,McElheny, D.,Tereshko, V.,Hilyard, A.,Gawlak, G.,Yan, S.,Koide, A.,Koide, S. Atomic structures of peptide self-assembly mimics. Proc.Natl.Acad.Sci.Usa 2006 103 17753 17758 2HSQ 17088427 Human vinculin (head domain, Vh1, residues 1-258) in complex with Shigella's IpaA vinculin binding site 2 (residues 565-587) 2006-07-22 2006-11-21 Izard, T.,Tran Van Nhieu, G.,Bois, P.R. Shigella applies molecular mimicry to subvert vinculin and invade host cells. J.Cell Biol. 2006 175 465 475 2I0B 17115050 Crystal structure of the GluR6 ligand binding core ELKQ mutant dimer at 1.96 Angstroms Resolution 2006-08-10 2006-11-21 Weston, M.C.,Schuck, P.,Ghosal, A.,Rosenmund, C.,Mayer, M.L. Conformational restriction blocks glutamate receptor desensitization. Nat.Struct.Mol.Biol. 2006 13 1120 1127 2I0C 17115050 Crystal structure of the GluR6 ligand binding core dimer crosslinked by disulfide bonds between Y490C and L752C at 2.25 Angstroms Resolution 2006-08-10 2006-11-21 Weston, M.C.,Schuck, P.,Ghosal, A.,Rosenmund, C.,Mayer, M.L. Conformational restriction blocks glutamate receptor desensitization. Nat.Struct.Mol.Biol. 2006 13 1120 1127 2IF5 17052694 Structure of the POZ domain of human LRF, a master regulator of oncogenesis 2006-09-20 2006-11-21 Schubot, F.D.,Tropea, J.E.,Waugh, D.S. Structure of the POZ domain of human LRF, a master regulator of oncogenesis. Biochem.Biophys.Res.Commun. 2006 351 1 6 2NSZ 17060447 1.15 Angstrom Crystal Structure of the MA3 domain of Pdcd4 2006-11-06 2006-11-21 LaRonde-LeBlanc, N.,Santhanam, A.N.,Baker, A.R.,Wlodawer, A.,Colburn, N.H. Structural basis for inhibition of translation by the tumor suppressor Pdcd4. Mol.Cell.Biol. 2007 27 147 156 2F6A 16362049 Collagen Adhesin and Collagen Complex Structure 2005-11-28 2006-12-12 Zong, Y.,Xu, Y.,Liang, X.,Keene, D.R.,Hook, A.,Gurusiddappa, S.,Hook, M.,Narayana, S.V. A 'Collagen Hug' model for Staphylococcus aureus CNA binding to collagen. Embo J. 2005 24 4224 4236 2HVH 17179038 ddCTP:O6MeG pair in the polymerase active site (0 position) 2006-07-28 2006-12-12 Warren, J.J.,Forsberg, L.J.,Beese, L.S. The structural basis for the mutagenicity of O6-methyl-guanine lesions. Proc.Natl.Acad.Sci.Usa 2006 103 19701 19706 2IHM 17159995 Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide 2006-09-26 2006-12-12 Moon, A.F.,Garcia-Diaz, M.,Bebenek, K.,Davis, B.J.,Zhong, X.,Ramsden, D.A.,Kunkel, T.A.,Pedersen, L.C. Structural insight into the substrate specificity of DNA Polymerase mu. Nat.Struct.Mol.Biol. 2007 14 45 53 2O3B 17138564 Crystal structure complex of Nuclease A (NucA) with intra-cellular inhibitor NuiA 2006-12-01 2006-12-19 Ghosh, M.,Meiss, G.,Pingoud, A.M.,London, R.E.,Pedersen, L.C. The nuclease a-inhibitor complex is characterized by a novel metal ion bridge. J.Biol.Chem. 2007 282 5682 5690 2O6I 21757692 Structure of an Enterococcus Faecalis HD Domain Phosphohydrolase 2006-12-07 2006-12-19 Vorontsov, I.I.,Minasov, G.,Kiryukhina, O.,Brunzelle, J.S.,Shuvalova, L.,Anderson, W.F. Characterization of the deoxynucleotide triphosphate triphosphohydrolase (dNTPase) activity of the EF1143 protein from Enterococcus faecalis and crystal structure of the activator-substrate complex. J.Biol.Chem. 2011 286 33158 33166 2DST 18084077 Crystal Structure Analysis of TT1977 2006-07-06 2007-01-06 Xie, Y.,Takemoto, C.,Kishishita, S.,Uchikubo-Kamo, T.,Murayama, K.,Chen, L.,Liu, Z.J.,Wang, B.C.,Manzoku, M.,Ebihara, A.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F 2007 63 993 997 2HPS 18385886 Crystal structure of coelenterazine-binding protein from Renilla Muelleri 2006-07-17 2007-01-09 Stepanyuk, G.A.,Liu, Z.J.,Markova, S.S.,Frank, L.A.,Lee, J.,Vysotski, E.S.,Wang, B.C. Crystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein. PHOTOCHEM.PHOTOBIOL.SCI. 2008 7 442 447 2HRY 17154526 T. maritima PurL complexed with AMPPCP 2006-07-20 2007-01-09 Morar, M.,Anand, R.,Hoskins, A.A.,Stubbe, J.,Ealick, S.E. Complexed Structures of Formylglycinamide Ribonucleotide Amidotransferase from Thermotoga maritima Describe a Novel ATP Binding Protein Superfamily Biochemistry 2006 45 14880 14895 2IS1 17190599 Crystal structure of UvrD-DNA-SO4 complex 2006-10-16 2007-01-09 Lee, J.Y.,Yang, W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.) 2006 127 1349 1360 2IS2 17190599 Crystal structure of UvrD-DNA binary complex 2006-10-16 2007-01-09 Lee, J.Y.,Yang, W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.) 2006 127 1349 1360 2IS4 17190599 Crystal structure of UvrD-DNA-ADPNP ternary complex 2006-10-16 2007-01-09 Lee, J.Y.,Yang, W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.) 2006 127 1349 1360 2IS6 17190599 Crystal structure of UvrD-DNA-ADPMgF3 ternary complex 2006-10-16 2007-01-09 Lee, J.Y.,Yang, W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.) 2006 127 1349 1360 2FN8 19019243 Thermotoga maritima Ribose Binding Protein Ribose Bound Form 2006-01-10 2007-01-16 Cuneo, M.J.,Beese, L.S.,Hellinga, H.W. Ligand-induced conformational changes in a thermophilic ribose-binding protein. Bmc Struct.Biol. 2008 8 50 50 2FN9 19019243 Thermotoga maritima Ribose Binding Protein Unliganded Form 2006-01-10 2007-01-16 Cuneo, M.J.,Beese, L.S.,Hellinga, H.W. Ligand-induced conformational changes in a thermophilic ribose-binding protein. Bmc Struct.Biol. 2008 8 50 50 2FNC Thermotoga maritima maltotriose binding protein bound with maltotriose. 2006-01-10 2007-01-16 Cuneo, M.J.,Changela, A.,Hocker, B.,Beese, L.S.,Hellinga, H.W. The crystal structure of redundant maltotriose binding proteins from the thermophile Thermotoga maritima To be Published 0 0 0 0 2GBL 16628225 Crystal Structure of Full Length Circadian Clock Protein KaiC with Phosphorylation Sites 2006-03-10 2007-01-23 Pattanayek, R.,Williams, D.R.,Pattanayek, S.,Xu, Y.,Mori, T.,Johnson, C.H.,Stewart, P.L.,Egli, M. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. Embo J. 2006 25 2017 2028 2O36 17251185 Crystal structure of engineered thimet oligopeptidase with neurolysin specificity in neurotensin cleavage site 2006-11-30 2007-01-23 Lim, E.J.,Sampath, S.,Coll-Rodriguez, J.,Schmidt, J.,Ray, K.,Rodgers, D.W. Swapping the substrate specificities of the neuropeptidases neurolysin and thimet oligopeptidase. J.Biol.Chem. 2007 282 9722 9732 2O3E 17251185 Crystal structure of engineered neurolysin with thimet oligopeptidase specificity for neurotensin cleavage site. 2006-12-01 2007-01-23 Lim, E.J.,Sampath, S.,Coll-Rodriguez, J.,Schmidt, J.,Ray, K.,Rodgers, D.W. Swapping the substrate specificities of the neuropeptidases neurolysin and thimet oligopeptidase. J.Biol.Chem. 2007 282 9722 9732 2NVU 17220875 Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex 2006-11-13 2007-01-30 Huang, D.T.,Hunt, H.W.,Zhuang, M.,Ohi, M.D.,Holton, J.M.,Schulman, B.A. Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity. Nature 2007 445 394 398 2O9I 17215127 Crystal Structure of the Human Pregnane X Receptor LBD in complex with an SRC-1 coactivator peptide and T0901317 2006-12-13 2007-01-30 Xue, Y.,Chao, E.,Zuercher, W.J.,Willson, T.M.,Collins, J.L.,Redinbo, M.R. 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Biochemistry 2007 46 807 818 2O2P 17302434 Crystal structure of the C-terminal domain of rat 10'formyltetrahydrofolate dehydrogenase 2006-11-30 2007-03-06 Tsybovsky, Y.,Donato, H.,Krupenko, N.I.,Davies, C.,Krupenko, S.A. Crystal structures of the carboxyl terminal domain of rat 10-formyltetrahydrofolate dehydrogenase: implications for the catalytic mechanism of aldehyde dehydrogenases. Biochemistry 2007 46 2917 2929 2O2Q 17302434 Crystal structure of the C-terminal domain of rat 10'formyltetrahydrofolate dehydrogenase in complex with NADP 2006-11-30 2007-03-06 Tsybovsky, Y.,Donato, H.,Krupenko, N.I.,Davies, C.,Krupenko, S.A. Crystal structures of the carboxyl terminal domain of rat 10-formyltetrahydrofolate dehydrogenase: implications for the catalytic mechanism of aldehyde dehydrogenases. 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J.Biol.Chem. 2007 282 13573 0 2NMY 17243183 Crystal structure analysis of HIV-1 protease mutant V82A with a inhibitor saquinavir 2006-10-23 2007-03-13 Tie, Y.,Kovalevsky, A.Y.,Boross, P.,Wang, Y.F.,Ghosh, A.K.,Tozser, J.,Harrison, R.W.,Weber, I.T. Atomic resolution crystal structures of HIV-1 protease and mutants V82A and I84V with saquinavir. Proteins 2007 67 232 242 2NMZ 17243183 Crystal structure analysis of HIV-1 protease mutant V82A with a inhibitor saquinavir 2006-10-23 2007-03-13 Tie, Y.,Kovalevsky, A.Y.,Boross, P.,Wang, Y.F.,Ghosh, A.K.,Tozser, J.,Harrison, R.W.,Weber, I.T. Atomic resolution crystal structures of HIV-1 protease and mutants V82A and I84V with saquinavir. Proteins 2007 67 232 242 2NNK 17243183 Crystal structure analysis of HIV-1 protease mutant I84V with a inhibitor saquinavir 2006-10-24 2007-03-13 Tie, Y.,Kovalevsky, A.Y.,Boross, P.,Wang, Y.F.,Ghosh, A.K.,Tozser, J.,Harrison, R.W.,Weber, I.T. 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Structure 2007 15 29 38 2NZ8 17391702 N-terminal DHPH cassette of Trio in complex with nucleotide-free Rac1 2006-11-22 2007-04-10 Chhatriwala, M.K.,Betts, L.,Worthylake, D.K.,Sondek, J. The DH and PH Domains of Trio Coordinately Engage Rho GTPases for their Efficient Activation J.Mol.Biol. 2007 368 1307 1320 2P5U Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD 2007-03-16 2007-04-17 Fu, Z.-Q.,Chen, L.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Zhao, M.,Dillard, B.,Chrzas, J.,Rose, J.P.,Wang, B.-C. Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD To be Published 0 0 0 0 2P62 Crystal structure of hypothetical protein PH0156 from Pyrococcus horikoshii OT3 2007-03-16 2007-04-17 Fu, Z.-Q.,Chen, L.,Zhu, J.,Swindell, J.T.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Chrzas, J.,Rose, J.P.,Wang, B.-C. Crystal structure of hypothetical protein PH0156 from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 2P68 Crystal Structure of aq_1716 from Aquifex Aeolicus VF5 2007-03-16 2007-04-17 Chen, L.,Chen, L.-Q.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Zhao, M.,Dillard, B.,Rose, J.P.,Wang, B.-C. Crystal Structure of aq_1716 from Aquifex aeolicus VF5 To be Published 0 0 0 0 2HYQ 17340634 Crystal structure of a complex of griffithsin with 6alpha-mannobiose 2006-08-07 2007-04-24 Ziolkowska, N.E.,Shenoy, S.R.,O'keefe, B.R.,McMahon, J.B.,Palmer, K.E.,Dwek, R.A.,Wormald, M.R.,Wlodawer, A. Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. Proteins 2007 67 661 670 2HYR 17340634 Crystal structure of a complex of griffithsin with maltose 2006-08-07 2007-04-24 Ziolkowska, N.E.,Shenoy, S.R.,O'keefe, B.R.,McMahon, J.B.,Palmer, K.E.,Dwek, R.A.,Wormald, M.R.,Wlodawer, A. Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. Proteins 2007 67 661 670 2NXT 17330962 Structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase II 2006-11-19 2007-04-24 Fisher, S.Z.,Tu, C.K.,Bhatt, D.,Govindasamy, L.,Agbandje-McKenna, M.,McKenna, R.,Silverman, D.N. Speeding Up Proton Transfer in a Fast Enzyme: Kinetic and Crystallographic Studies on the Effect of Hydrophobic Amino Acid Substitutions in the Active Site of Human Carbonic Anhydrase II. Biochemistry 2007 46 3803 3813 2P8T Hypothetical protein PH0730 from Pyrococcus horikoshii OT3 2007-03-23 2007-04-24 Chen, L.,Zhao, M.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Zhu, J.,Swindell, J.T.,Fu, Z.-Q.,Chrzas, J.,Rose, J.P.,Wang, B.-C. Hypothetical protein PH0730 from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 2HRR 17407327 Crystal structure of Human Liver Carboxylesterase 1 (hCE1) in covalent complex with the nerve agent Tabun (GA) 2006-07-20 2007-05-01 Fleming, C.D.,Edwards, C.C.,Kirby, S.D.,Maxwell, D.M.,Potter, P.M.,Cerasoli, D.M.,Redinbo, M.R. Crystal Structures of Human Carboxylesterase 1 in Covalent Complexes with the Chemical Warfare Agents Soman and Tabun. Biochemistry 2007 46 5063 5071 2O6L 17442341 Crystal Structure of the UDP-Glucuronic Acid Binding Domain of the Human Drug Metabolizing UDP-Glucuronosyltransferase 2B7 2006-12-07 2007-05-01 Miley, M.J.,Zielinska, A.K.,Keenan, J.E.,Bratton, S.M.,Radominska-Pandya, A.,Redinbo, M.R. Crystal Structure of the Cofactor-Binding Domain of the Human Phase II Drug-Metabolism Enzyme UDP-Glucuronosyltransferase 2B7. 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Crystal structure of GK1651 from Geobacillus kaustophilus To be Published 0 0 0 0 2HDF 17464289 Crystal structure of the Colicin I receptor Cir from E.coli 2006-06-20 2007-05-08 Buchanan, S.K.,Lukacik, P.,Grizot, S.,Ghirlando, R.,Ali, M.M.,Barnard, T.J.,Jakes, K.S.,Kienker, P.K.,Esser, L. Structure of colicin I receptor bound to the R-domain of colicin Ia: implications for protein import. Embo J. 2007 26 2594 2604 2HDI 17464289 Crystal structure of the Colicin I receptor Cir from E.coli in complex with receptor binding domain of Colicin Ia. 2006-06-20 2007-05-08 Buchanan, S.K.,Lukacik, P.,Grizot, S.,Ghirlando, R.,Ali, M.M.,Barnard, T.J.,Jakes, K.S.,Kienker, P.K.,Esser, L. Structure of colicin I receptor bound to the R-domain of colicin Ia: implications for protein import. Embo J. 2007 26 2594 2604 2JHT 17452789 CRYSTAL STRUCTURE OF RHOGDI K135T,K138T,K141T MUTANT 2007-02-23 2007-05-08 Cooper, D.R.,Boczek, T.,Grelewska, K.,Pinkowska, M.,Sikorska, M.,Zawadzki, M.,Derewenda, Z.S. Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy Acta Crystallogr.,Sect.D 2007 63 636 0 2JHU 17452789 CRYSTAL STRUCTURE OF RHOGDI E154A,E155A MUTANT 2007-02-23 2007-05-08 Cooper, D.R.,Boczek, T.,Grelewska, K.,Pinkowska, M.,Sikorska, M.,Zawadzki, M.,Derewenda, Z.S. Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy Acta Crystallogr.,Sect.D 2007 63 636 0 2JHV 17452789 CRYSTAL STRUCTURE OF RHOGDI E154A,E155A MUTANT 2007-02-23 2007-05-08 Cooper, D.R.,Boczek, T.,Grelewska, K.,Pinkowska, M.,Sikorska, M.,Zawadzki, M.,Derewenda, Z.S. Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy Acta Crystallogr.,Sect.D 2007 63 636 0 2JHW 17452789 CRYSTAL STRUCTURE OF RHOGDI E155A, E157A MUTANT 2007-02-23 2007-05-08 Cooper, D.R.,Boczek, T.,Grelewska, K.,Pinkowska, M.,Sikorska, M.,Zawadzki, M.,Derewenda, Z.S. Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy Acta Crystallogr.,Sect.D 2007 63 636 0 2JHY 17452789 CRYSTAL STRUCTURE OF RHOGDI E155H, E157H MUTANT 2007-02-23 2007-05-08 Cooper, D.R.,Boczek, T.,Grelewska, K.,Pinkowska, M.,Sikorska, M.,Zawadzki, M.,Derewenda, Z.S. Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy Acta Crystallogr.,Sect.D 2007 63 636 0 2PH7 Crystal structure of AF2093 from Archaeoglobus fulgidus 2007-04-10 2007-05-08 Chang, J.C.,Yang, H.,Hwang, J.,Zhu, J.,Chen, L.,Fu, Z.-Q.,Xu, H.,Rose, J.P.,Wang, B.-C. Crystal structure of AF2093 from Archaeoglobus fulgidus. To be Published 0 0 0 0 2PHC Crystal structure of conserved uncharacterized protein PH0987 from Pyrococcus horikoshii 2007-04-10 2007-05-08 Swindell II, J.T.,Chen, L.,Zhu, J.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Fu, Z.-Q.,Chrzas, J.,Rose, J.P.,Wang, B.-C. Crystal structure of conserved uncharacterized protein PH0987 from Pyrococcus horikoshii. To be Published 0 0 0 0 2OFI 17410210 Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mA 2007-01-03 2007-05-15 Metz, A.H.,Hollis, T.,Eichman, B.F. DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Embo J. 2007 26 2411 2420 2OFK 17410210 Crystal Structure of 3-methyladenine DNA glycosylase I (TAG) 2007-01-03 2007-05-15 Metz, A.H.,Hollis, T.,Eichman, B.F. DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Embo J. 2007 26 2411 2420 2OYH 17411074 Crystal Structure of Fragment D of gammaD298,301A Fibrinogen with the Peptide Ligand Gly-His-Arg-Pro-Amide 2007-02-22 2007-05-15 Kostelansky, M.S.,Lounes, K.C.,Ping, L.F.,Dickerson, S.K.,Gorkun, O.V.,Lord, S.T. 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J.Biol.Chem. 2007 282 19894 19904 2PU7 17442675 Crystal Structure of S112A/H265A double mutant of a C-C hydrolase, BphD, from Burkholderia xenovorans LB400 2007-05-08 2007-05-22 Horsman, G.P.,Bhowmik, S.,Seah, S.Y.,Kumar, P.,Bolin, J.T.,Eltis, L.D. The Tautomeric Half-reaction of BphD, a C-C Bond Hydrolase: KINETIC AND STRUCTURAL EVIDENCE SUPPORTING A KEY ROLE FOR HISTIDINE 265 OF THE CATALYTIC TRIAD. J.Biol.Chem. 2007 282 19894 19904 2PVW 17567119 A high resolution structure of human glutamate carboxypeptidase II (GCPII) in complex with 2-(phosphonomethyl)pentanedioic acid (2-PMPA) 2007-05-10 2007-05-22 Barinka, C.,Rovenska, M.,Mlcochova, P.,Hlouchova, K.,Plechanovova, A.,Majer, P.,Tsukamoto, T.,Slusher, B.S.,Konvalinka, J.,Lubkowski, J. Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II. J.Med.Chem. 2007 50 3267 3273 2EFK 17512409 Crystal structure of the EFC domain of Cdc42-interacting protein 4 2007-02-23 2007-05-29 Shimada, A.,Niwa, H.,Tsujita, K.,Suetsugu, S.,Nitta, K.,Hanawa-Suetsugu, K.,Akasaka, R.,Nishino, Y.,Toyama, M.,Chen, L.,Liu, Z.-J.,Wang, B.-C.,Yamamoto, M.,Terada, T.,Miyazawa, A.,Tanaka, A.,Sugano, S.,Shirouzu, M.,Nagayama, K.,Takenawa, T.,Yokoyama, S. Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis Cell(Cambridge,Mass.) 2007 129 761 772 2GZM 17610893 Crystal Structure of the Glutamate Racemase from Bacillus anthracis 2006-05-11 2007-05-29 May, M.,Mehboob, S.,Mulhearn, D.C.,Wang, Z.,Yu, H.,Thatcher, G.R.,Santarsiero, B.D.,Johnson, M.E.,Mesecar, A.D. Structural and functional analysis of two glutamate racemase isozymes from Bacillus anthracis and implications for inhibitor design. J.Mol.Biol. 2007 371 1219 1237 2OFS 17505110 Crystal structure of human CD59 2007-01-04 2007-05-29 Huang, Y.,Fedarovich, A.,Tomlinson, S.,Davies, C. Crystal structure of CD59: implications for molecular recognition of the complement proteins C8 and C9 in the membrane-attack complex. Acta Crystallogr.,Sect.D 2007 63 714 721 2OQA 17470286 X-ray Sequence and Crystal Structure of Luffaculin 1, a Novel Type 1 Ribosome-inactivating Protein 2007-01-31 2007-05-29 Hou, X.,Chen, M.,Chen, L.,Meehan, E.J.,Xie, J.,Huang, M. X-ray sequence and crystal structure of luffaculin 1, a novel type 1 ribosome-inactivating protein Bmc Struct.Biol. 2007 7 29 29 2P4D 17505108 Structure-assisted discovery of Variola major H1 phosphatase inhibitors 2007-03-12 2007-05-29 Phan, J.,Tropea, J.E.,Waugh, D.S. Structure-assisted discovery of variola major H1 phosphatase inhibitors Acta Crystallogr.,Sect.D 2007 0 698 704 2E3V Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4 2006-11-30 2007-06-05 Saijo, S.,Nishino, A.,Kishishita, S.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Yokoyama, S. Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4 To be Published 0 0 0 0 2O8C 17531815 human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispair 2006-12-12 2007-06-05 Warren, J.J.,Pohlhaus, T.J.,Changela, A.,Iyer, R.R.,Modrich, P.L.,Beese, L.S. Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell 2007 26 579 592 2O8D 17531815 human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispair 2006-12-12 2007-06-05 Warren, J.J.,Pohlhaus, T.J.,Changela, A.,Iyer, R.R.,Modrich, P.L.,Beese, L.S. Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell 2007 26 579 592 2O8E 17531815 human MutSalpha (MSH2/MSH6) bound to a G T mispair, with ADP bound to MSH2 only 2006-12-12 2007-06-05 Warren, J.J.,Pohlhaus, T.J.,Changela, A.,Iyer, R.R.,Modrich, P.L.,Beese, L.S. Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell 2007 26 579 592 2O8F 17531815 human MutSalpha (MSH2/MSH6) bound to DNA with a single base T insert 2006-12-12 2007-06-05 Warren, J.J.,Pohlhaus, T.J.,Changela, A.,Iyer, R.R.,Modrich, P.L.,Beese, L.S. Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell 2007 26 579 592 2P22 17442384 Structure of the Yeast ESCRT-I Heterotetramer Core 2007-03-06 2007-06-05 Kostelansky, M.S.,Schluter, C.,Tam, Y.Y.,Lee, S.,Ghirlando, R.,Beach, B.,Conibear, E.,Hurley, J.H. Molecular architecture and functional model of the complete yeast ESCRT-I heterotetramer. Cell(Cambridge,Mass.) 2007 129 485 498 2P22 17442384 Structure of the Yeast ESCRT-I Heterotetramer Core 2007-03-06 2007-06-05 Kostelansky, M.S.,Schluter, C.,Tam, Y.Y.,Lee, S.,Ghirlando, R.,Beach, B.,Conibear, E.,Hurley, J.H. Molecular architecture and functional model of the complete yeast ESCRT-I heterotetramer. Cell(Cambridge,Mass.) 2007 129 485 498 2PJW 17543868 The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting 2007-04-16 2007-06-05 Prag, G.,Watson, H.,Kim, Y.C.,Beach, B.M.,Ghirlando, R.,Hummer, G.,Bonifacino, J.S.,Hurley, J.H. The Vps27/Hse1 Complex Is a GAT Domain-Based Scaffold for Ubiquitin-Dependent Sorting. Dev.Cell 2007 12 973 986 2IMF 17508726 2-Hydroxychromene-2-carboxylate Isomerase: a Kappa Class Glutathione-S-Transferase from Pseudomonas putida 2006-10-04 2007-06-12 Thompson, L.C.,Ladner, J.E.,Codreanu, S.G.,Harp, J.,Gilliland, G.L.,Armstrong, R.N. 2-Hydroxychromene-2-carboxylic acid isomerase: a kappa class glutathione transferase from Pseudomonas putida. Biochemistry 2007 46 6710 6722 2PBY Probable Glutaminase from Geobacillus kaustophilus HTA426 2007-03-29 2007-06-12 Dillard, B.D.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Rose, J.P.,Wang, B.-C. Glutaminase from Geobacillus kaustophilus HTA426 To be Published 0 0 0 0 2PW6 Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12 2007-05-10 2007-06-12 Newton, M.G.,Takagi, Y.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokayama, S.,Li, Y.,Chen, L.,Zhu, J.,Ruble, J.,Liu, Z.J.,Rose, J.P.,Wang, B.-C. Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12. To be Published 0 0 0 0 2HK9 17649975 Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution 2006-07-03 2007-06-19 Gan, J.,Wu, Y.,Prabakaran, P.,Gu, Y.,Li, Y.,Andrykovitch, M.,Liu, H.,Gong, Y.,Yan, H.,Ji, X. Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism. Biochemistry 2007 46 9513 9522 2I8T 17371001 GDP-mannose mannosyl hydrolase-calcium-GDP-mannose complex 2006-09-03 2007-06-19 Zou, Y.,Li, C.,Brunzelle, J.S.,Nair, S.K. Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme Biochemistry 2007 46 4294 4304 2H99 19400783 Crystal structure of the effector binding domain of a BenM variant (R156H,T157S) 2006-06-09 2007-06-26 Craven, S.H.,Ezezika, O.C.,Haddad, S.,Hall, R.A.,Momany, C.,Neidle, E.L. Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1. Mol.Microbiol. 2009 72 881 894 2HB0 17569668 Crystal Structure of CfaE, the Adhesive Subunit of CFA/I Fimbria of Enterotoxigenic Escherichia coli 2006-06-13 2007-06-26 Li, Y.F.,Poole, S.,Rasulova, F.,McVeigh, A.L.,Savarino, S.J.,Xia, D. A receptor-binding site as revealed by the crystal structure of CfaE, the colonization factor antigen I fimbrial adhesin of enterotoxigenic Escherichia coli. J.Biol.Chem. 2007 282 23970 23980 2ORE 17545164 Binary Structure of Escherichia coli DNA Adenine Methyltransferase and S-adenosylhomocysteine 2007-02-02 2007-06-26 Liebert, K.,Horton, J.R.,Chahar, S.,Orwick, M.,Cheng, X.,Jeltsch, A. Two Alternative Conformations of S-Adenosyl-L-homocysteine Bound to Escherichia coli DNA Adenine Methyltransferase and the Implication of Conformational Changes in Regulating the Catalytic Cycle. J.Biol.Chem. 2007 282 22848 22855 2V0X 17562312 The dimerization domain of LAP2alpha 2007-05-20 2007-06-26 Bradley, C.M.,Jones, S.,Huang, Y.,Suzuki, Y.,Kvaratskhelia, M.,Hickman, A.B.,Craigie, R.,Dyda, F. Structural Basis for Dimerization of Lap2Alpha, a Component of the Nuclear Lamina. Structure 2007 15 643 0 2CI0 17846131 High throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for CYP51 inhibitors 2006-03-16 2007-07-03 Podust, L.M.,Von Kries, J.P.,Eddine, A.N.,Kim, Y.,Yermalitskaya, L.V.,Kuehne, R.,Ouellet, H.,Warrier, T.,Altekoster, M.,Lee, J.-S.,Rademann, J.,Oschkinat, H.,Kaufmann, S.H.E.,Waterman, M.R. Small Molecule Scaffolds for Cyp51 Inhibitors Identified by High Throughput Screening and Defined by X-Ray Crystallography Antimicrob.Agents Chemother. 2007 51 3915 0 2HJM Crystal structure of a singleton protein PF1176 from P. furiosus 2006-06-30 2007-07-03 Rose, J.P.,Liu, Z.-J.,Wang, B.-C. Crystal structure of a singleton protein PF1176 from P. furiosus To be Published 0 0 0 0 2HQE Crystal structure of human P100 Tudor domain: Large fragment 2006-07-18 2007-07-03 Shah, N.,Zhao, M.,Cheng, C.,Xu, H.,Yang, J.,Silvennoinen, O.,Wang, B.C.,Liu, Z.J. Crystal Structure of a large fragment of the Human P100 Tudor Domain To be Published 0 0 0 0 2O5I 17581590 Crystal structure of the T. thermophilus RNA polymerase elongation complex 2006-12-06 2007-07-03 Vassylyev, D.G.,Vassylyeva, M.N.,Perederina, A.,Tahirov, T.H.,Artsimovitch, I. Structural basis for transcription elongation by bacterial RNA polymerase. Nature 2007 448 157 162 2O5J 17581591 Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog 2006-12-06 2007-07-03 Vassylyev, D.G.,Vassylyeva, M.N.,Zhang, J.,Palangat, M.,Artsimovitch, I.,Landick, R. Structural basis for substrate loading in bacterial RNA polymerase. Nature 2007 448 163 168 2OM2 17603074 Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 2007-01-20 2007-07-10 Sammond, D.W.,Eletr, Z.M.,Purbeck, C.,Kimple, R.J.,Siderovski, D.P.,Kuhlman, B. Structure-based Protocol for Identifying Mutations that Enhance Protein-Protein Binding Affinities. J.Mol.Biol. 2007 371 1392 1404 2E7V Crystal structure of SEA domain of transmembrane protease from Mus musculus 2007-01-15 2007-07-17 Xie, Y.,Kishishita, S.,Murayama, K.,Hori-Takemoto, C.,Shirozu, M.,Yokoyama, S.,Chen, L.,Liu, Z.J.,Wang, B.C. Crystal structure of SEA domain of transmembrane protease from Mus musculus To be Published 0 0 0 0 2PPB 17581591 Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydigin 2007-04-28 2007-07-17 Vassylyev, D.G.,Vassylyeva, M.N.,Zhang, J.,Palangat, M.,Artsimovitch, I.,Landick, R. Structural basis for substrate loading in bacterial RNA polymerase. Nature 2007 448 163 168 2PZB 17642516 NAD+ Synthetase from Bacillus anthracis 2007-05-17 2007-07-31 McDonald, H.M.,Pruett, P.S.,Deivanayagam, C.,Protasevich, I.I.,Carson, W.M.,DeLucas, L.J.,Brouillette, W.J.,Brouillette, C.G. Structural adaptation of an interacting non-native C-terminal helical extension revealed in the crystal structure of NAD(+) synthetase from Bacillus anthracis. Acta Crystallogr.,Sect.D 2007 63 891 905 2Q7N 17652170 Crystal structure of Leukemia inhibitory factor in complex with LIF receptor (domains 1-5) 2007-06-07 2007-07-31 Huyton, T.,Zhang, J.G.,Luo, C.S.,Lou, M.Z.,Hilton, D.J.,Nicola, N.A.,Garrett, T.P. An unusual cytokine:Ig-domain interaction revealed in the crystal structure of leukemia inhibitory factor (LIF) in complex with the LIF receptor. Proc.Natl.Acad.Sci.USA 2007 104 12737 12742 2NU5 17567736 Crystal structure of a complex of griffithsin cocrystallized with N-acetylglucosamine 2006-11-08 2007-08-07 Ziolkowska, N.E.,Shenoy, S.R.,O'Keefe, B.R.,Wlodawer, A. Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine Protein Sci. 2007 16 1485 1489 2NUO 17567736 Crystal structure of a complex of griffithsin with glucose 2006-11-09 2007-08-07 Ziolkowska, N.E.,Shenoy, S.R.,O'Keefe, B.R.,Wlodawer, A. Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine. Protein Sci. 2007 16 1485 1489 2DUY Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8 2006-07-27 2007-08-14 Niwa, H.,Shimada, A.,Chen, L.,Liu, Z.-J.,Wang, B.-C.,Ebihara, A.,Yokoyama, S. Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8 To be Published 0 0 0 0 2NOJ 17699522 Crystal structure of Ehp / C3d complex 2006-10-25 2007-08-14 Hammel, M.,Sfyroera, G.,Pyrpassopoulos, S.,Ricklin, D.,Ramyar, K.X.,Pop, M.,Jin, Z.,Lambris, J.D.,Geisbrecht, B.V. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. J.Biol.Chem. 2007 282 30051 30061 2PUY 17687328 Crystal Structure of the BHC80 PHD finger 2007-05-09 2007-08-14 Lan, F.,Collins, R.E.,De Cegli, R.,Alpatov, R.,Horton, J.R.,Shi, X.,Gozani, O.,Cheng, X.,Shi, Y. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature 2007 448 718 722 2PV0 17687327 DNA methyltransferase 3 like protein (DNMT3L) 2007-05-09 2007-08-14 Ooi, S.K.,Qiu, C.,Bernstein, E.,Li, K.,Jia, D.,Yang, Z.,Erdjument-Bromage, H.,Tempst, P.,Lin, S.P.,Allis, C.D.,Cheng, X.,Bestor, T.H. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 2007 448 714 717 2PVC 17687327 DNMT3L recognizes unmethylated histone H3 lysine 4 2007-05-09 2007-08-14 Ooi, S.K.,Qiu, C.,Bernstein, E.,Li, K.,Jia, D.,Yang, Z.,Erdjument-Bromage, H.,Tempst, P.,Lin, S.P.,Allis, C.D.,Cheng, X.,Bestor, T.H. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 2007 448 714 717 2Q13 17581628 Crystal structure of BAR-PH domain of APPL1 2007-05-23 2007-08-14 Zhu, G.,Chen, J.,Liu, J.,Brunzelle, J.S.,Huang, B.,Wakeham, N.,Terzyan, S.,Li, X.,Rao, Z.,Li, G.,Zhang, X.C. Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5. Embo J. 2007 26 3484 3493 2QTA 17635929 E. coli Pyruvate dehydrogenase E1 component E401K mutant with thiamin diphosphate 2007-08-01 2007-08-14 Kale, S.,Arjunan, P.,Furey, W.,Jordan, F. 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Febs J. 2007 274 4752 4765 2QL7 17697120 Crystal Structure of Caspase-7 with inhibitor AC-IEPD-CHO 2007-07-12 2007-08-28 Agniswamy, J.,Fang, B.,Weber, I.T. Plasticity of S2-S4 specificity pockets of executioner caspase-7 revealed by structural and kinetic analysis. Febs J. 2007 274 4752 4765 2QL9 17697120 Crystal Structure of Caspase-7 with inhibitor AC-DQMD-CHO 2007-07-12 2007-08-28 Agniswamy, J.,Fang, B.,Weber, I.T. Plasticity of S2-S4 specificity pockets of executioner caspase-7 revealed by structural and kinetic analysis. Febs J. 2007 274 4752 4765 2QLB 17697120 Crystal Structure of caspase-7 with inhibitor AC-ESMD-CHO 2007-07-12 2007-08-28 Agniswamy, J.,Fang, B.,Weber, I.T. Plasticity of S2-S4 specificity pockets of executioner caspase-7 revealed by structural and kinetic analysis. Febs J. 2007 274 4752 4765 2QLF 17697120 Crystal Structure of Caspase-7 with inhibitor AC-DNLD-CHO 2007-07-12 2007-08-28 Agniswamy, J.,Fang, B.,Weber, I.T. 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To be Published 0 0 0 0 2DY1 Crystal structure of EF-G-2 from Thermus thermophilus 2006-09-04 2007-09-25 Wang, H.,Takemoto, C.,Murayama, K.,Terada, T.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Yokoyama, S. Crystal structure of EF-G-2 from Thermus thermophilus To be Published 0 0 0 0 2OGR 17886433 Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution 2007-01-08 2007-09-25 Pletneva, N.V.,Pletnev, S.V.,Chudakov, D.M.,Tikhonova, T.V.,Popov, V.O.,Martynov, V.I.,Wlodawer, A.,Dauter, Z.,Pletnev, V.Z. Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom Bioorg.Khim. 0 33 421 430 2OJK 17881826 Crystal Structure of Green Fluorescent Protein from Zoanthus sp at 2.2 A Resolution 2007-01-12 2007-09-25 Pletneva, N.,Pletnev, V.,Tikhonova, T.,Pakhomov, A.A.,Popov, V.,Martynov, V.I.,Wlodawer, A.,Dauter, Z.,Pletnev, S. 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Structure 2007 15 1555 1566 2QWU Crystal structure of F. tularensis pathogenicity island protein C 2007-08-10 2007-10-16 Sun, P.,Austin, B.P.,Schubot, F.D.,Waugh, D.S. Crystal structure of Francisella tularensis pathogenicity island protein IglC To be Published 0 0 0 0 2O1T 17936703 Structure of Middle plus C-terminal domains (M+C) of GRP94 2006-11-29 2007-10-23 Dollins, D.E.,Warren, J.J.,Immormino, R.M.,Gewirth, D.T. Structures of GRP94-Nucleotide Complexes Reveal Mechanistic Differences between the hsp90 Chaperones. Mol.Cell 2007 28 41 56 2O1T 17936703 Structure of Middle plus C-terminal domains (M+C) of GRP94 2006-11-29 2007-10-23 Dollins, D.E.,Warren, J.J.,Immormino, R.M.,Gewirth, D.T. Structures of GRP94-Nucleotide Complexes Reveal Mechanistic Differences between the hsp90 Chaperones. Mol.Cell 2007 28 41 56 2O1W 17936703 Structure of N-terminal plus middle domains (N+M) of GRP94 2006-11-29 2007-10-23 Dollins, D.E.,Warren, J.J.,Immormino, R.M.,Gewirth, D.T. 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Biochem.Biophys.Res.Commun. 2007 364 1 6 2Q1O 17881374 Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2) 2007-05-25 2007-10-30 Li, F.,Pallan, P.S.,Maier, M.A.,Rajeev, K.G.,Mathieu, S.L.,Kreutz, C.,Fan, Y.,Sanghvi, J.,Micura, R.,Rozners, E.,Manoharan, M.,Egli, M. Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme. Nucleic Acids Res. 2007 35 6424 6438 2R17 17891154 Functional architecture of the retromer cargo-recognition complex 2007-08-22 2007-10-30 Hierro, A.,Rojas, A.L.,Rojas, R.,Murthy, N.,Effantin, G.,Kajava, A.V.,Steven, A.C.,Bonifacino, J.S.,Hurley, J.H. Functional architecture of the retromer cargo-recognition complex. Nature 2007 449 1063 1067 2V9W 17951245 Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand 2007-08-27 2007-10-30 Irimia, A.,Eoff, R.L.,Pallan, P.S.,Guengerich, F.P.,Egli, M. Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene. J.Biol.Chem. 2007 282 36421 0 2YXM Crystal structure of I-set domain of human Myosin Binding ProteinC 2007-04-26 2007-10-30 Kishishita, S.,Ohsawa, N.,Murayama, K.,Terada, T.,Chen, L.,Liu, Z.,Shirouzu, M.,Wang, B.,Yokoyama, S. Crystal structure of I-set domain of human Myosin Binding ProteinC To be Published 0 0 0 0 2RI6 17442675 Crystal Structure of S112A mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400 2007-10-10 2007-11-06 Horsman, G.P.,Bhowmik, S.,Seah, S.Y.,Kumar, P.,Bolin, J.T.,Eltis, L.D. The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad. J.Biol.Chem. 2007 282 19894 19904 2VF6 Human FDPS synthase in complex with minodronate 2007-10-31 2007-11-06 Evdokimov, A.G.,Barnett, B.L.,Ebetino, F.H.,Pokross, M. Human Fdps Synthase in Complex with Novel Inhibitor To be Published 0 0 0 0 2E1D Crystal structure of mouse transaldolase 2006-10-25 2007-11-13 Kishishita, S.,Murayama, K.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Yokoyama, S. Crystal structure of mouse transaldolase To be Published 0 0 0 0 2O2D 18561188 Crystal structure of phosphoglucose isomerase from Trypanosoma brucei complexed with citrate 2006-11-29 2007-11-13 Arsenieva, D.,Appavu, B.L.,Mazock, G.H.,Jeffery, C.J. Crystal structure of phosphoglucose isomerase from Trypanosoma brucei complexed with glucose-6-phosphate at 1.6 A resolution Proteins 2008 74 72 80 2QK9 17964265 Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid 2007-07-10 2007-11-13 Nowotny, M.,Gaidamakov, S.A.,Ghirlando, R.,Cerritelli, S.M.,Crouch, R.J.,Yang, W. Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell 2007 28 264 276 2QKB 17964265 Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid 2007-07-10 2007-11-13 Nowotny, M.,Gaidamakov, S.A.,Ghirlando, R.,Cerritelli, S.M.,Crouch, R.J.,Yang, W. Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell 2007 28 264 276 2QKK 17964265 Human RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybrid 2007-07-11 2007-11-13 Nowotny, M.,Gaidamakov, S.A.,Ghirlando, R.,Cerritelli, S.M.,Crouch, R.J.,Yang, W. Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell 2007 28 264 276 2QOM 17994105 The crystal structure of the E.coli EspP autotransporter Beta-domain. 2007-07-20 2007-11-13 Barnard, T.J.,Dautin, N.,Lukacik, P.,Bernstein, H.D.,Buchanan, S.K. Autotransporter structure reveals intra-barrel cleavage followed by conformational changes. Nat.Struct.Mol.Biol. 2007 14 1214 1220 2RHT 17932031 Crystal Structure of the S112A mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400, in complex with 3-Cl HOPDA 2007-10-09 2007-11-13 Bhowmik, S.,Horsman, G.P.,Bolin, J.T.,Eltis, L.D. The Molecular Basis for Inhibition of BphD, a C-C Bond Hydrolase Involved in Polychlorinated Biphenyls Degradation: LARGE 3-SUBSTITUENTS PREVENT TAUTOMERIZATION. 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Protein Sci. 2007 16 2756 2760 2V71 17997972 Coiled-coil region of NudEL 2007-07-25 2007-11-27 Derewenda, U.,Tarricone, C.,Choi, W.C.,Cooper, D.R.,Lukasik, S.,Perrina, F.,Tripathy, A.,Kim, M.H.,Cafiso, D.S.,Musacchio, A.,Derewenda, Z.S. The Structure of the Coiled-Coil Domain of Ndel1 and the Basis of its Interaction with Lis1, the Causal Protein of Miller-Dieker Lissencephaly. Structure 2007 15 1467 0 2QRV 17713477 Structure of Dnmt3a-Dnmt3L C-terminal domain complex 2007-07-29 2007-12-04 Jia, D.,Jurkowska, R.Z.,Zhang, X.,Jeltsch, A.,Cheng, X. Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature 2007 449 248 251 2R8S 18162543 High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain 2007-09-11 2007-12-04 Ye, J.D.,Tereshko, V.,Frederiksen, J.K.,Koide, A.,Fellouse, F.A.,Sidhu, S.S.,Koide, S.,Kossiakoff, A.A.,Piccirilli, J.A. 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Protein Sci. 2008 17 16 21 2V83 18025461 Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide 2007-08-02 2007-12-11 Ramon-Maiques, S.,Kuo, A.J.,Carney, D.,Matthews, A.G.W.,Oettinger, M.A.,Gozani, O.,Yang, W. The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2. Proc.Natl.Acad.Sci.USA 2007 104 18993 0 2V85 18025461 Crystal structure of RAG2-PHD finger in complex with H3R2me1K4me3 peptide 2007-08-02 2007-12-11 Ramon-Maiques, S.,Kuo, A.J.,Carney, D.,Matthews, A.G.W.,Oettinger, M.A.,Gozani, O.,Yang, W. The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2. 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Structure 2007 15 1618 1629 2RGC 18073111 Crystal structure of H-RasQ61V-GppNHp 2007-10-03 2007-12-18 Buhrman, G.,Wink, G.,Mattos, C. Transformation Efficiency of RasQ61 Mutants Linked to Structural Features of the Switch Regions in the Presence of Raf. Structure 2007 15 1618 1629 2RGD 18073111 Crystal structure of H-RasQ61L-GppNHp 2007-10-03 2007-12-18 Buhrman, G.,Wink, G.,Mattos, C. Transformation Efficiency of RasQ61 Mutants Linked to Structural Features of the Switch Regions in the Presence of Raf. Structure 2007 15 1618 1629 2RGE 18073111 Crystal structure of H-Ras-GppNHp 2007-10-03 2007-12-18 Buhrman, G.,Wink, G.,Mattos, C. Transformation Efficiency of RasQ61 Mutants Linked to Structural Features of the Switch Regions in the Presence of Raf. Structure 2007 15 1618 1629 2RGG 18073111 Crystal structure of H-RasQ61I-GppNHp, trigonal crystal form 2007-10-03 2007-12-18 Buhrman, G.,Wink, G.,Mattos, C. Transformation Efficiency of RasQ61 Mutants Linked to Structural Features of the Switch Regions in the Presence of Raf. Structure 2007 15 1618 1629 3B7V 18052235 HIV-1 protease complexed with gem-diol-amine tetrahedral intermediate NLLTQI 2007-10-31 2007-12-18 Kovalevsky, A.Y.,Chumanevich, A.A.,Liu, F.,Louis, J.M.,Weber, I.T. Caught in the Act: The 1.5 A Resolution Crystal Structures of the HIV-1 Protease and the I54V Mutant Reveal a Tetrahedral Reaction Intermediate. Biochemistry 2007 46 14854 14864 3B80 18052235 HIV-1 protease mutant I54V complexed with gem-diol-amine intermediate NLLTQI 2007-10-31 2007-12-18 Kovalevsky, A.Y.,Chumanevich, A.A.,Liu, F.,Louis, J.M.,Weber, I.T. Caught in the Act: The 1.5 A Resolution Crystal Structures of the HIV-1 Protease and the I54V Mutant Reveal a Tetrahedral Reaction Intermediate. 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Crystal Structure of the Pregnane X Receptor bound to Colupulone TO BE PUBLISHED 0 0 0 0 3C0E Yeast Hsp82 N-terminal domain: effects of mutants 98-99 KS-AA 2008-01-19 2008-07-29 Immormino, R.M.,Metzger IV, L.E.,Reardon, P.N.,Gewirth, D.T. Crystal Structure of GRP94 with the Specific Mutation KS168-169AA with Bound Geldanamycin To be Published 0 0 0 0 3C11 Yeast Hsp82 N-terminal domain-Geldanamycin complex: effects of mutants 98-99 KS-AA 2008-01-21 2008-07-29 Immormino, R.M.,Metzger IV, L.E.,Reardon, P.N.,Gewirth, D.T. Crystal Structure of GRP94 with the Specific Mutation KS168-169AA with Bound Geldanamycin To be Published 0 0 0 0 3DA5 Crystal Structure of Piwi/Argonaute/Zwille(PAZ) domain from Thermococcus thioreducens 2008-05-28 2008-07-29 Hughes, R.C.,Ng, J.D. 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Neuropharmacology 2009 56 121 130 2QS4 20558186 Crystal structure of the GluR5 ligand binding core dimer in complex with LY466195 at 1.58 Angstroms resolution 2007-07-30 2008-08-05 Alushin, G.M.,Jane, D.,Mayer, M.L. Binding site and ligand flexibility revealed by high resolution crystal structures of GluK1 competitive antagonists. Neuropharmacology 2011 60 126 134 2RC7 18636091 Crystal structure of the NR3A ligand binding core complex with glycine at 1.58 Angstrom resolution 2007-09-19 2008-08-05 Yao, Y.,Harrison, C.B.,Freddolino, P.L.,Schulten, K.,Mayer, M.L. Molecular mechanism of ligand recognition by NR3 subtype glutamate receptors. Embo J. 2008 27 2158 2170 2RC8 18636091 Crystal structure of the NR3A ligand binding core complex with D-serine at 1.45 Angstrom resolution 2007-09-19 2008-08-05 Yao, Y.,Harrison, C.B.,Freddolino, P.L.,Schulten, K.,Mayer, M.L. Molecular mechanism of ligand recognition by NR3 subtype glutamate receptors. 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Crystal structures of complexes of bacterial DD-peptidases with peptidoglycan-mimetic ligands: the substrate specificity puzzle J.Mol.Biol. 2008 381 383 393 3E46 19407372 Crystal structure of ubiquitin-conjugating enzyme E2-25kDa (Huntington interacting protein 2) M172A mutant 2008-08-09 2008-08-26 Wilson, R.C.,Hughes, R.C.,Flatt, J.W.,Meehan, E.J.,Ng, J.D.,Twigg, P.D. Structure of full-length ubiquitin-conjugating enzyme E2-25K (huntingtin-interacting protein 2). Acta Crystallogr.,Sect.F 2009 65 440 444 2QX9 18254726 Crystal Structure of Quinone Reductase II 2007-08-10 2008-09-02 Calamini, B.,Santarsiero, B.D.,Boutin, J.A.,Mesecar, A.D. Kinetic, thermodynamic and X-ray structural insights into the interaction of melatonin and analogues with quinone reductase 2. 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Structural evidence for effectiveness of darunavir and two related antiviral inhibitors against HIV-2 protease J.Mol.Biol. 2008 384 178 192 3EC0 18834890 High Resolution HIV-2 Protease Structure in Complex with Antiviral Inhibitor GRL-06579A 2008-08-28 2008-09-16 Kovalevsky, A.Y.,Louis, J.M.,Aniana, A.,Ghosh, A.K.,Weber, I.T. Structural evidence for effectiveness of darunavir and two related antiviral inhibitors against HIV-2 protease J.Mol.Biol. 2008 384 178 192 3ECG 18834890 High Resolution HIV-2 Protease Structure in Complex with Antiviral Inhibitor GRL-98065 2008-08-29 2008-09-16 Kovalevsky, A.Y.,Louis, J.M.,Aniana, A.,Ghosh, A.K.,Weber, I.T. Structural evidence for effectiveness of darunavir and two related antiviral inhibitors against HIV-2 protease J.Mol.Biol. 2008 384 178 192 2R8U Structure of fragment of human end-binding protein 1 (EB1) containing the N-terminal domain at 1.35 A resolution 2007-09-11 2008-09-23 Huang, X.,Lovelace, L.L.,Smith, D.,Lebioda, L. Structure of fragment of human end-binding protein 1 (EB1) containing the N-terminal domain at 1.35 A resolution To be Published 0 0 0 0 3DAN 18787124 Crystal Structure of Allene oxide synthase 2008-05-29 2008-09-23 Li, L.,Chang, Z.,Pan, Z.,Fu, Z.Q.,Wang, X. Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase. Proc.Natl.Acad.Sci.Usa 2008 105 13883 13888 3DJL 18829440 Crystal structure of alkylation response protein E. coli AidB 2008-06-23 2008-09-23 Bowles, T.,Metz, A.H.,O'Quin, J.,Wawrzak, Z.,Eichman, B.F. Structure and DNA binding of alkylation response protein AidB. Proc.Natl.Acad.Sci.USA 2008 105 15299 15304 3EFZ 21853016 Crystal Structure of a 14-3-3 protein from cryptosporidium parvum (cgd1_2980) 2008-09-10 2008-09-23 Brokx, S.J.,Wernimont, A.K.,Dong, A.,Wasney, G.A.,Lin, Y.H.,Lew, J.,Vedadi, M.,Lee, W.H.,Hui, R. Characterization of 14-3-3 proteins from Cryptosporidium parvum. Plos One 2011 6 0 0 3DJK 18783203 Wild Type HIV-1 Protease with potent Antiviral inhibitor GRL-0255A 2008-06-23 2008-09-30 Ghosh, A.K.,Gemma, S.,Baldridge, A.,Wang, Y.F.,Kovalevsky, A.Y.,Koh, Y.,Weber, I.T.,Mitsuya, H. Flexible cyclic ethers/polyethers as novel P2-ligands for HIV-1 protease inhibitors: design, synthesis, biological evaluation, and protein-ligand X-ray studies J.Med.Chem. 2008 51 6021 6033 3DRA 18713740 Candida albicans protein geranylgeranyltransferase-I complexed with GGPP 2008-07-10 2008-09-30 Hast, M.A.,Beese, L.S. Structure of protein geranylgeranyltransferase-I from the human pathogen Candida albicans complexed with a lipid substrate. J.Biol.Chem. 2008 283 31933 31940 3BWH 18652900 Atomic resolution structure of cucurmosin, a novel type 1 RIP from the sarcocarp of Cucurbita moschata 2008-01-09 2008-10-07 Hou, X.,Meehan, E.J.,Xie, J.,Huang, M.,Chen, M.,Chen, L. 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J.Mol.Biol. 2009 392 481 497 3GRE 19445518 Crystal structure of Saccharomyces cerevisiae Vps15 WD repeat domain 2009-03-25 2009-07-28 Heenan, E.J.,Vanhooke, J.L.,Temple, B.R.,Betts, L.,Sondek, J.E.,Dohlman, H.G. Structure and function of Vps15 in the endosomal G protein signaling pathway. Biochemistry 2009 48 6390 6401 3GTE 19616009 Crystal Structure of Dicamba Monooxygenase with Non-heme Iron 2009-03-27 2009-07-28 D'Ordine, R.L.,Rydel, T.J.,Storek, M.J.,Sturman, E.J.,Moshiri, F.,Bartlett, R.K.,Brown, G.R.,Eilers, R.J.,Dart, C.,Qi, Y.,Flasinski, S.,Franklin, S.J. Dicamba monooxygenase: structural insights into a dynamic Rieske oxygenase that catalyzes an exocyclic monooxygenation. J.Mol.Biol. 2009 392 481 497 3GTS 19616009 Crystal Structure of Dicamba Monooxygenase with Non-heme Iron and Dicamba 2009-03-28 2009-07-28 D'Ordine, R.L.,Rydel, T.J.,Storek, M.J.,Sturman, E.J.,Moshiri, F.,Bartlett, R.K.,Brown, G.R.,Eilers, R.J.,Dart, C.,Qi, Y.,Flasinski, S.,Franklin, S.J. 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J.Biol.Chem. 2011 286 27048 27057 3RRR 21613394 Structure of the RSV F protein in the post-fusion conformation 2011-04-30 2011-06-08 McLellan, J.S.,Yang, Y.,Graham, B.S.,Kwong, P.D. Structure of respiratory syncytial virus fusion glycoprotein in the postfusion conformation reveals preservation of neutralizing epitopes. J.Virol. 2011 85 7788 7796 3RRT 21613394 Structure of the RSV F protein in the post-fusion conformation 2011-04-30 2011-06-08 McLellan, J.S.,Yang, Y.,Graham, B.S.,Kwong, P.D. Structure of respiratory syncytial virus fusion glycoprotein in the postfusion conformation reveals preservation of neutralizing epitopes. J.Virol. 2011 85 7788 7796 3PC6 21652643 X-ray crystal structure of the second XRCC1 BRCT domain. 2010-10-21 2011-06-15 Cuneo, M.J.,Gabel, S.A.,Krahn, J.M.,Ricker, M.A.,London, R.E. The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes. 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J.Struct.Biol. 2011 176 292 0 3NVI 20864039 Structure of N-terminal truncated Nop56/58 bound with L7Ae and box C/D RNA 2010-07-08 2011-07-20 Xue, S.,Wang, R.,Yang, F.,Terns, R.M.,Terns, M.P.,Zhang, X.,Maxwell, E.S.,Li, H. Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol.Cell 2010 39 939 949 3NVK 20864039 Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle 2010-07-08 2011-07-20 Xue, S.,Wang, R.,Yang, F.,Terns, R.M.,Terns, M.P.,Zhang, X.,Maxwell, E.S.,Li, H. Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol.Cell 2010 39 939 949 3NVM 20864039 Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle 2010-07-08 2011-07-20 Xue, S.,Wang, R.,Yang, F.,Terns, R.M.,Terns, M.P.,Zhang, X.,Maxwell, E.S.,Li, H. Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol.Cell 2010 39 939 949 3P7L 21731629 Rat Insulin Degrading Enzyme (Insulysin) 2010-10-12 2011-07-20 Noinaj, N.,Bhasin, S.K.,Song, E.S.,Scoggin, K.E.,Juliano, M.A.,Juliano, L.,Hersh, L.B.,Rodgers, D.W. Identification of the allosteric regulatory site of insulysin. Plos One 2011 6 0 0 3SM8 21707047 Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase in Complex with an (N5) Flavin Adduct 2011-06-27 2011-07-20 Fu, G.,Yuan, H.,Wang, S.,Gadda, G.,Weber, I.T. Atomic-resolution structure of an N5 flavin adduct in D-arginine dehydrogenase. Biochemistry 2011 50 6292 6294 3P7O 21731629 Rat Insulin Degrading Enzyme (Insulysin) E111F mutant with two bound peptides 2010-10-12 2011-07-27 Noinaj, N.,Bhasin, S.K.,Song, E.S.,Scoggin, K.E.,Juliano, M.A.,Juliano, L.,Hersh, L.B.,Rodgers, D.W. Identification of the allosteric regulatory site of insulysin. Plos One 2011 6 0 0 3Q6K 21795673 Salivary protein from Lutzomyia longipalpis 2011-01-02 2011-07-27 Xu, X.,Oliveira, F.,Chang, B.W.,Collin, N.,Gomes, R.,Teixeira, C.,Reynoso, D.,My Pham, V.,Elnaiem, D.E.,Kamhawi, S.,Ribeiro, J.M.,Valenzuela, J.G.,Andersen, J.F. Structure and function of a ""yellow"" protein from saliva of the sand fly Lutzomyia longipalpis that confers protective immunity against Leishmania major infection. J.Biol.Chem. 2011 286 32383 32393 3SNP 17185597 Crystal structure analysis of iron regulatory protein 1 in complex with ferritin H IRE RNA 2011-06-29 2011-07-27 Walden, W.E.,Selezneva, A.I.,Dupuy, J.,Volbeda, A.,Fontecilla-Camps, J.C.,Theil, E.C.,Volz, K. Structure of dual function iron regulatory protein 1 complexed with ferritin IRE-RNA. Science 2006 314 1903 1908 3P8G 21693064 Crystal Structure of MT-SP1 in complex with benzamidine 2010-10-13 2011-08-03 Yuan, C.,Chen, L.,Meehan, E.J.,Daly, N.,Craik, D.J.,Huang, M.,Ngo, J.C. Structure of catalytic domain of Matriptase in complex with Sunflower trypsin inhibitor-1. Bmc Struct.Biol. 2011 11 30 30 3Q73 21816822 Cryptococcus neoformans protein farnesyltransferase, apo enzyme 2011-01-04 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. 2011 286 35149 35162 3Q78 21816822 Cryptococcus neoformans protein farnesyltransferase in complex with FSPP and DDPTASACNIQ peptide 2011-01-04 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. 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J.Virol. 2016 90 5899 5914 5IQ9 27053554 Crystal structure of 10E8v4 Fab in complex with an HIV-1 gp41 peptide. 2016-03-10 2016-04-20 Kwon, Y.D.,Georgiev, I.S.,Ofek, G.,Zhang, B.,Asokan, M.,Bailer, R.T.,Bao, A.,Caruso, W.,Chen, X.,Choe, M.,Druz, A.,Ko, S.Y.,Louder, M.K.,McKee, K.,O'Dell, S.,Pegu, A.,Rudicell, R.S.,Shi, W.,Wang, K.,Yang, Y.,Alger, M.,Bender, M.F.,Carlton, K.,Cooper, J.W.,Blinn, J.,Eudailey, J.,Lloyd, K.,Parks, R.,Alam, S.M.,Haynes, B.F.,Padte, N.N.,Yu, J.,Ho, D.D.,Huang, J.,Connors, M.,Schwartz, R.M.,Mascola, J.R.,Kwong, P.D. Optimization of the Solubility of HIV-1-Neutralizing Antibody 10E8 through Somatic Variation and Structure-Based Design. J.Virol. 2016 90 5899 5914 5CHQ 27070125 Dehaloperoxidase B in complex with substrate p-nitrophenol 2015-07-10 2016-04-27 McCombs, N.L.,D'Antonio, J.,Barrios, D.A.,Carey, L.M.,Ghiladi, R.A. Nonmicrobial Nitrophenol Degradation via Peroxygenase Activity of Dehaloperoxidase-Hemoglobin from Amphitrite ornata. 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Angew.Chem.Int.Ed.Engl. 2016 55 5703 5707 5FYJ 27114034 Crystal Structure at 3.4 A Resolution of Fully Glycosylated HIV-1 Clade G X1193.c1 SOSIP.664 Prefusion Env Trimer in Complex with Broadly Neutralizing Antibodies PGT122, 35O22 and VRC01 2016-03-08 2016-04-27 Stewart-Jones, G.B.E.,Soto, C.,Lemmin, T.,Chuang, G.Y.,Druz, A.,Kong, R.,Thomas, P.V.,Wagh, K.,Zhou, T.,Behrens, A.J.,Bylund, T.,Choi, C.W.,Davison, J.R.,Georgiev, I.S.,Joyce, M.G.,Kwon, Y.D.,Pancera, M.,Taft, J.,Yang, Y.,Zhang, B.,Shivatare, S.S.,Shivatare, V.S.,Lee, C.C.D.,Wu, C.Y.,Bewley, C.A.,Burton, D.R.,Koff, W.C.,Connors, M.,Crispin, M.,Korber, B.T.,Wong, C.H.,Mascola, J.R.,Kwong, P.D. 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Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B and G Cell(Cambridge,Mass.) 2016 165 813 0 5HT2 27060144 Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex with 1-N6-etheno-adenine 2016-01-26 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. 2016 44 3829 3844 5INK 27060144 Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex 2016-03-07 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. 2016 44 3829 3844 5INL 27060144 Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex with deoxyadenosine 2016-03-07 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. 2016 44 3829 3844 5INM 27060144 Mouse Tdp2 protein, apo state with variable DNA-binding grasp conformations 2016-03-07 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. 2016 44 3829 3844 5INN 27060144 Mouse Tdp2 D358N protein, apo state with increased disorder amongst variable DNA-binding grasp conformations 2016-03-07 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res. 2016 44 3829 3844 5INO 27060144 Human Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex 2016-03-07 2016-04-27 Schellenberg, M.J.,Perera, L.,Strom, C.N.,Waters, C.A.,Monian, B.,Appel, C.D.,Vilas, C.K.,Williams, J.G.,Ramsden, D.A.,Williams, R.S. Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. 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Chem. 2017 292 446 461 5F89 28076415 Structure of the Unliganded Fab from HIV-1 Neutralising Antibody CAP248-2B that Binds to the gp120 C-terminus - gp41 Interface 2015-12-09 2016-12-21 Wibmer, C.K.,Gorman, J.,Ozorowski, G.,Bhiman, J.N.,Sheward, D.J.,Elliott, D.H.,Rouelle, J.,Smira, A.,Joyce, M.G.,Ndabambi, N.,Druz, A.,Asokan, M.,Burton, D.R.,Connors, M.,Abdool Karim, S.S.,Mascola, J.R.,Robinson, J.E.,Ward, A.B.,Williamson, C.,Kwong, P.D.,Morris, L.,Moore, P.L. Structure and Recognition of a Novel HIV-1 gp120-gp41 Interface Antibody that Caused MPER Exposure through Viral Escape. PLoS Pathog. 2017 13 0 0 5FFX S. aureus MepR G34K Mutant 2015-12-19 2016-12-21 Newman, C.E.,Birukou, I.,Brennan, R.G. S. aureus MepR G34K Mutant To Be Published 0 0 0 0 5ICT 27889096 Crystal structure of the Drosophila GluR1A ligand binding domain Y792T mutant complex with glutamate 2016-02-23 2016-12-21 Li, Y.,Dharkar, P.,Han, T.H.,Serpe, M.,Lee, C.H.,Mayer, M.L. 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Cell 2016 166 609 623 5MP6 28076415 Structure of the Unliganded Fab from HIV-1 Neutralizing Antibody CAP248-2B that Binds to the gp120 C-terminus - gp41 Interface, at two Angstrom resolution. 2016-12-15 2016-12-28 Wibmer, C.K.,Gorman, J.,Ozorowski, G.,Bhiman, J.N.,Sheward, D.J.,Elliott, D.H.,Rouelle, J.,Smira, A.,Joyce, M.G.,Ndabambi, N.,Druz, A.,Asokan, M.,Burton, D.R.,Connors, M.,Abdool Karim, S.S.,Mascola, J.R.,Robinson, J.E.,Ward, A.B.,Williamson, C.,Kwong, P.D.,Morris, L.,Moore, P.L. Structure and Recognition of a Novel HIV-1 gp120-gp41 Interface Antibody that Caused MPER Exposure through Viral Escape. PLoS Pathog. 2017 13 0 0 5T50 27973758 LIGAND-FREE LECTIN FROM BAUHINIA FORFICATA 2016-08-30 2016-12-28 Lubkowski, J.,Durbin, S.V.,Silva, M.C.,Farnsworth, D.,Gildersleeve, J.C.,Oliva, M.L.,Wlodawer, A. Structural analysis and unique molecular recognition properties of a Bauhinia forficata lectin that inhibits cancer cell growth. 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Chem. 2016 59 10619 10628 5T2E 27992544 Crystal Structure of multi-drug resistant HIV-1 protease PR-S17 2016-08-23 2017-01-11 Agniswamy, J.,Louis, J.M.,Roche, J.,Harrison, R.W.,Weber, I.T. Structural Studies of a Rationally Selected Multi-Drug Resistant HIV-1 Protease Reveal Synergistic Effect of Distal Mutations on Flap Dynamics. PLoS ONE 2016 11 0 0 5T2Z 27992544 Crystal Structure of Multi-drug Resistant HIV-1 Protease PR-S17 in Complex with Darunavir 2016-08-24 2017-01-11 Agniswamy, J.,Louis, J.M.,Roche, J.,Harrison, R.W.,Weber, I.T. Structural Studies of a Rationally Selected Multi-Drug Resistant HIV-1 Protease Reveal Synergistic Effect of Distal Mutations on Flap Dynamics. PLoS ONE 2016 11 0 0 5U6Z 28028224 Crystal Structure of Xenopus laevis Apex2 C-terminal Znf-GRF Domain 2016-12-09 2017-01-11 Wallace, B.D.,Berman, Z.,Mueller, G.A.,Lin, Y.,Chang, T.,Andres, S.N.,Wojtaszek, J.L.,DeRose, E.F.,Appel, C.D.,London, R.E.,Yan, S.,Williams, R.S. 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Sci Immunol 2017 2 0 0 5U3M 28783671 Crystal Structure of DH511.11P Fab in Complex with HIV-1 gp41 MPER Peptide 2016-12-02 2017-02-15 Williams, L.D.,Ofek, G.,Schatzle, S.,McDaniel, J.R.,Lu, X.,Nicely, N.I.,Wu, L.,Lougheed, C.S.,Bradley, T.,Louder, M.K.,McKee, K.,Bailer, R.T.,O'Dell, S.,Georgiev, I.S.,Seaman, M.S.,Parks, R.J.,Marshall, D.J.,Anasti, K.,Yang, G.,Nie, X.,Tumba, N.L.,Wiehe, K.,Wagh, K.,Korber, B.,Kepler, T.B.,Munir Alam, S.,Morris, L.,Kamanga, G.,Cohen, M.S.,Bonsignori, M.,Xia, S.M.,Montefiori, D.C.,Kelsoe, G.,Gao, F.,Mascola, J.R.,Moody, M.A.,Saunders, K.O.,Liao, H.X.,Tomaras, G.D.,Georgiou, G.,Haynes, B.F. Potent and broad HIV-neutralizing antibodies in memory B cells and plasma. Sci Immunol 2017 2 0 0 5U3N 28783671 Crystal Structure of DH511.12P Fab in Complex with HIV-1 gp41 MPER Peptide 2016-12-02 2017-02-15 Williams, L.D.,Ofek, G.,Schatzle, S.,McDaniel, J.R.,Lu, X.,Nicely, N.I.,Wu, L.,Lougheed, C.S.,Bradley, T.,Louder, M.K.,McKee, K.,Bailer, R.T.,O'Dell, S.,Georgiev, I.S.,Seaman, M.S.,Parks, R.J.,Marshall, D.J.,Anasti, K.,Yang, G.,Nie, X.,Tumba, N.L.,Wiehe, K.,Wagh, K.,Korber, B.,Kepler, T.B.,Munir Alam, S.,Morris, L.,Kamanga, G.,Cohen, M.S.,Bonsignori, M.,Xia, S.M.,Montefiori, D.C.,Kelsoe, G.,Gao, F.,Mascola, J.R.,Moody, M.A.,Saunders, K.O.,Liao, H.X.,Tomaras, G.D.,Georgiou, G.,Haynes, B.F. Potent and broad HIV-neutralizing antibodies in memory B cells and plasma. 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Sci Immunol 2017 2 0 0 5U3P 28783671 Crystal Structure of DH511.4 Fab 2016-12-02 2017-02-15 Williams, L.D.,Ofek, G.,Schatzle, S.,McDaniel, J.R.,Lu, X.,Nicely, N.I.,Wu, L.,Lougheed, C.S.,Bradley, T.,Louder, M.K.,McKee, K.,Bailer, R.T.,O'Dell, S.,Georgiev, I.S.,Seaman, M.S.,Parks, R.J.,Marshall, D.J.,Anasti, K.,Yang, G.,Nie, X.,Tumba, N.L.,Wiehe, K.,Wagh, K.,Korber, B.,Kepler, T.B.,Munir Alam, S.,Morris, L.,Kamanga, G.,Cohen, M.S.,Bonsignori, M.,Xia, S.M.,Montefiori, D.C.,Kelsoe, G.,Gao, F.,Mascola, J.R.,Moody, M.A.,Saunders, K.O.,Liao, H.X.,Tomaras, G.D.,Georgiou, G.,Haynes, B.F. Potent and broad HIV-neutralizing antibodies in memory B cells and plasma. 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Biochemistry 2018 57 6166 6179 6D3F 30289412 Crystal Structure of the PTP epsilon D2 domain 2018-04-16 2018-10-17 Lountos, G.T.,Raran-Kurussi, S.,Zhao, B.M.,Dyas, B.K.,Burke Jr., T.R.,Ulrich, R.G.,Waugh, D.S. High-resolution crystal structures of the D1 and D2 domains of protein tyrosine phosphatase epsilon for structure-based drug design. Acta Crystallogr D Struct Biol 2018 74 1015 1026 6D4D 30289412 Crystal structure of the PTP epsilon D1 domain 2018-04-18 2018-10-17 Lountos, G.T.,Raran-Kurussi, S.,Zhao, B.M.,Dyas, B.K.,Burke Jr., T.R.,Ulrich, R.G.,Waugh, D.S. High-resolution crystal structures of the D1 and D2 domains of protein tyrosine phosphatase epsilon for structure-based drug design. Acta Crystallogr D Struct Biol 2018 74 1015 1026 6DIF 30288468 Wild-type HIV-1 protease in complex with tipranavir 2018-05-23 2018-10-17 Wong-Sam, A.,Wang, Y.F.,Zhang, Y.,Ghosh, A.K.,Harrison, R.W.,Weber, I.T. 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Inorg Chem 2018 57 14386 14395 5WOO 30429218 The crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with Myristic acid (C14:0) to 1.78 Angstrom resolution 2017-08-02 2018-11-21 Cuypers, M.G.,Subramanian, C.,Gullett, J.M.,Frank, M.W.,White, S.W.,Rock, C.O. Acyl-chain selectivity and physiological roles ofStaphylococcus aureusfatty acid-binding proteins. J. Biol. Chem. 2019 294 38 49 6DQ4 30392349 LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR GSK-J1 2018-06-10 2018-11-21 Horton, J.R.,Woodcock, C.B.,Chen, Q.,Liu, X.,Zhang, X.,Shanks, J.,Rai, G.,Mott, B.T.,Jansen, D.J.,Kales, S.C.,Henderson, M.J.,Cyr, M.,Pohida, K.,Hu, X.,Shah, P.,Xu, X.,Jadhav, A.,Maloney, D.J.,Hall, M.D.,Simeonov, A.,Fu, H.,Vertino, P.M.,Cheng, X. Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A. J. Med. 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Nature 2018 553 361 365 6M7G 30993215 Crystal structure of ArsN, N-acetyltransferase with substrate phosphinothricin from Pseudomonas putida KT2440 2018-08-20 2019-04-24 Nadar, V.S.,Chen, J.,Dheeman, D.S.,Galvan, A.E.,Yoshinaga-Sakurai, K.,Kandavelu, P.,Sankaran, B.,Kuramata, M.,Ishikawa, S.,Rosen, B.P.,Yoshinaga, M. Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic. Commun Biol 2019 2 131 131 6O69 30993792 Crystal Structure of Double Mutant L380R/F535K of Human Acetylcholinesterase 2019-03-05 2019-05-01 Bester, S.M.,Adipietro, K.A.,Funk, V.L.,Myslinski, J.M.,Keul, N.D.,Cheung, J.,Wilder, P.T.,Wood, Z.A.,Weber, D.J.,Height, J.J.,Pegan, S.D. The structural and biochemical impacts of monomerizing human acetylcholinesterase. Protein Sci. 2019 28 1106 1114 6NZ7 31004012 Crystal structure of broadly neutralizing Influenza A antibody 429 B01 in complex with Hemagglutinin Hong Kong 1968 2019-02-13 2019-05-08 Matsuda, K.,Huang, J.,Zhou, T.,Sheng, Z.,Kang, B.H.,Ishida, E.,Griesman, T.,Stuccio, S.,Bolkhovitinov, L.,Wohlbold, T.J.,Chromikova, V.,Cagigi, A.,Leung, K.,Andrews, S.,Cheung, C.S.F.,Pullano, A.A.,Plyler, J.,Soto, C.,Zhang, B.,Yang, Y.,Joyce, M.G.,Tsybovsky, Y.,Wheatley, A.,Narpala, S.R.,Guo, Y.,Darko, S.,Bailer, R.T.,Poole, A.,Liang, C.J.,Smith, J.,Alexander, J.,Gurwith, M.,Migueles, S.A.,Koup, R.A.,Golding, H.,Khurana, S.,McDermott, A.B.,Shapiro, L.,Krammer, F.,Kwong, P.D.,Connors, M. Prolonged evolution of the memory B cell response induced by a replicating adenovirus-influenza H5 vaccine. Sci Immunol 2019 4 0 0 6OMN 31019025 Glycosylated BMP2 homodimer 2019-04-19 2019-05-08 Seeherman, H.J.,Berasi, S.P.,Brown, C.T.,Martinez, R.X.,Juo, Z.S.,Jelinsky, S.,Cain, M.J.,Grode, J.,Tumelty, K.E.,Bohner, M.,Grinberg, O.,Orr, N.,Shoseyov, O.,Eyckmans, J.,Chen, C.,Morales, P.R.,Wilson, C.G.,Vanderploeg, E.J.,Wozney, J.M. A BMP/activin A chimera is superior to native BMPs and induces bone repair in nonhuman primates when delivered in a composite matrix. Sci Transl Med 2019 11 0 0 6OMO 31019025 Human BMP6 homodimer 2019-04-19 2019-05-08 Seeherman, H.J.,Berasi, S.P.,Brown, C.T.,Martinez, R.X.,Juo, Z.S.,Jelinsky, S.,Cain, M.J.,Grode, J.,Tumelty, K.E.,Bohner, M.,Grinberg, O.,Orr, N.,Shoseyov, O.,Eyckmans, J.,Chen, C.,Morales, P.R.,Wilson, C.G.,Vanderploeg, E.J.,Wozney, J.M. A BMP/activin A chimera is superior to native BMPs and induces bone repair in nonhuman primates when delivered in a composite matrix. Sci Transl Med 2019 11 0 0 6B1B 31068633 STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI MUTANT XS6 (APO Enzyme) 2017-09-18 2019-05-22 Shen, X.,Zhou, D.,Lin, Y.,Wang, J.,Gao, S.,Kandavelu, P.,Zhang, H.,Zhang, R.,Wang, B.C.,Rose, J.,Yuan, Q.,Yan, Y. Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli. Sci Rep 2019 9 7087 7087 6EB0 31068633 STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI 2018-08-03 2019-05-22 Shen, X.,Zhou, D.,Lin, Y.,Wang, J.,Gao, S.,Kandavelu, P.,Zhang, H.,Zhang, R.,Wang, B.C.,Rose, J.,Yuan, Q.,Yan, Y. Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli. Sci Rep 2019 9 7087 7087 6OM8 31616809 Caenorhabditis Elegans UDP-Glucose Dehydrogenase in complex with UDP-Xylose 2019-04-18 2019-05-22 Beattie, N.R.,Keul, N.D.,Hicks Sirmans, T.N.,McDonald, W.E.,Talmadge, T.M.,Taujale, R.,Kannan, N.,Wood, Z.A. Conservation of Atypical Allostery inC. elegansUDP-Glucose Dehydrogenase. Acs Omega 2019 4 16318 16329 6DHU 31199869 Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT0911 from cocktail soak 2018-05-21 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DIH 31199869 Crystal structure of Tdp1 catalytic domain in complex with Sigma Aldrich compound PH004941 2018-05-23 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DJ6 The X-ray crystal structure of the Streptococcus pneumoniae Fatty Acid Kinase (Fak) B2 protein loaded with cis-oleic acid to 1.9 Angstrom resolution 2018-05-24 2019-05-29 Cuypers, M.G.,Subramanian, C.,White, S.W.,Rock, C.O. The X-ray crystal structure of the Streptococcus pneumoniae Fatty Acid Kinase (Fak) B2 protein (SPR1019) loaded with cis-oleic acid to 1.9 Angstrom resolution To Be Published 0 0 0 0 6DJE 31199869 Crystal structure of Tdp1 catalytic domain in complex with Sigma Aldrich compound CDS010292 2018-05-25 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DJF 31199869 Crystal structure of Tdp1 catalytic domain in complex with compound XZ502 2018-05-25 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DJG 31199869 Crystal structure of Tdp1 catalytic domain in complex with compound XZ503 2018-05-25 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DJH 31199869 Crystal structure of Tdp1 catalytic domain in complex with compound XZ515 2018-05-25 2019-05-29 Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S. Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res. 2019 47 10134 10150 6DKE The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B1 protein loaded with palmitic acid (C16:0) to 1.76 Angstrom resolution 2018-05-29 2019-05-29 Cuypers, M.G.,Subramanian, C.,White, S.W.,Rock, C.O. The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B1 protein loaded with palmitic acid (C16:0) to 1.76 Angstrom resolution To Be Published 0 0 0 0 6OD3 31081034 Human TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide Containing E-box Sequence 2019-03-25 2019-05-29 Yang, J.,Horton, J.R.,Li, J.,Huang, Y.,Zhang, X.,Blumenthal, R.M.,Cheng, X. Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine. 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Cell 2019 178 152 0 6DQC LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N50 i.e. 2-(4-((2-(dimethylamino)ethyl)(ethyl)carbamoyl)-5-(4-methoxyphenyl)-1H-pyrazol-1-yl)isonicotinic acid 2018-06-10 2019-06-12 Horton, J.R.,Liu, X.,Woodcock, C.B.,Shanks, J.,Zhang, X.,Rai, G.,Mott, B.,Jansen, D.J.,Kales, S.,Henderson, M.J.,Pohida, K.,Fang, Y.,Hu, X.,Jadhav, A.,Maloney, D.,Hall, M.D.,Simeonov, A.,Fu, H.,Vertino, P.M.,Cheng, X. To be determined To Be Published 0 0 0 0 6DQE LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N67 i.e. 2-(5-phenyl-4-(phenyl(2-(piperidin-1-yl)ethoxy)methyl)-1H-pyrazol-1-yl)isonicotinic acid 2018-06-10 2019-06-12 Horton, J.R.,Liu, X.,Woodcock, C.B.,Shanks, J.,Zhang, X.,Rai, G.,Mott, B.,Jansen, D.J.,Kales, S.,Henderson, M.J.,Pohida, K.,Fang, Y.,Hu, X.,Jadhav, A.,Maloney, D.,Hall, M.D.,Simeonov, A.,Fu, H.,Vertino, P.M.,Cheng, X. To be determined To Be Published 0 0 0 0 6NEA 31097996 Human Acetylcholinesterase in complex with reactivator, HLo7 2018-12-17 2019-06-12 Hsu, F.L.,Bae, S.Y.,McGuire, J.,Anderson, D.R.,Bester, S.M.,Height, J.J.,Pegan, S.D.,Walz, A.J. Synthesis and Molecular Properties of Nerve Agent Reactivator HLo-7 Dimethanesulfonate. Acs Med.Chem.Lett. 2019 10 761 766 6MOZ 30825709 Structure of acid-beta-glucosidase in complex with an aromatic pyrrolidine iminosugar inhibitor 2018-10-05 2019-06-19 Martinez-Bailen, M.,Carmona, A.T.,Patterson-Orazem, A.C.,Lieberman, R.L.,Ide, D.,Kubo, M.,Kato, A.,Robina, I.,Moreno-Vargas, A.J. Exploring substituent diversity on pyrrolidine-aryltriazole iminosugars: Structural basis of beta-glucocerebrosidase inhibition. Bioorg.Chem. 2019 86 652 664 6N81 31216462 Crystal structure of GII.4 2002 norovirus P domain in complex with cross-reactive human antibody A1227 2018-11-28 2019-06-19 Lindesmith, L.C.,McDaniel, J.R.,Changela, A.,Verardi, R.,Kerr, S.A.,Costantini, V.,Brewer-Jensen, P.D.,Mallory, M.L.,Voss, W.N.,Boutz, D.R.,Blazeck, J.J.,Ippolito, G.C.,Vinje, J.,Kwong, P.D.,Georgiou, G.,Baric, R.S. Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination. Immunity 2019 50 1530 0 6N8D 31216462 Crystal structure of GII.4 2002 norovirus P domain in complex with neutralizing human antibody A1431 2018-11-29 2019-06-19 Lindesmith, L.C.,McDaniel, J.R.,Changela, A.,Verardi, R.,Kerr, S.A.,Costantini, V.,Brewer-Jensen, P.D.,Mallory, M.L.,Voss, W.N.,Boutz, D.R.,Blazeck, J.J.,Ippolito, G.C.,Vinje, J.,Kwong, P.D.,Georgiou, G.,Baric, R.S. 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Highly Drug-Resistant HIV-1 Protease Mutant PRS17 Shows Enhanced Binding to Substrate Analogues. Acs Omega 2019 4 8707 8719 6O57 31172041 Crystal Structure of multi-drug resistant HIV-1 protease PR-S17 with a substrate analog p2-NC in P41 2019-03-01 2019-06-19 Agniswamy, J.,Kneller, D.W.,Brothers, R.,Wang, Y.F.,Harrison, R.W.,Weber, I.T. Highly Drug-Resistant HIV-1 Protease Mutant PRS17 Shows Enhanced Binding to Substrate Analogues. Acs Omega 2019 4 8707 8719 6O5A 31172041 Crystal Structure of multi-drug resistant HIV-1 protease PR-S17 with a substrate analog p2-NC in P61 2019-03-01 2019-06-19 Agniswamy, J.,Kneller, D.W.,Brothers, R.,Wang, Y.F.,Harrison, R.W.,Weber, I.T. Highly Drug-Resistant HIV-1 Protease Mutant PRS17 Shows Enhanced Binding to Substrate Analogues. Acs Omega 2019 4 8707 8719 6O5X 31172041 Crystal Structure of multi-drug resistant HIV-1 protease PR-S17 with substrate analog CA-p2 2019-03-04 2019-06-19 Agniswamy, J.,Kneller, D.W.,Brothers, R.,Wang, Y.F.,Harrison, R.W.,Weber, I.T. Highly Drug-Resistant HIV-1 Protease Mutant PRS17 Shows Enhanced Binding to Substrate Analogues. Acs Omega 2019 4 8707 8719 6OWK 31175187 Crystal structure of a Bacillus thuringiensis Cry1B.867 tryptic core variant 2019-05-10 2019-06-19 Wang, Y.,Wang, J.,Fu, X.,Nageotte, J.R.,Silverman, J.,Bretsnyder, E.C.,Chen, D.,Rydel, T.J.,Bean, G.J.,Li, K.S.,Kraft, E.,Gowda, A.,Nance, A.,Moore, R.G.,Pleau, M.J.,Milligan, J.S.,Anderson, H.M.,Asiimwe, P.,Evans, A.,Moar, W.J.,Martinelli, S.,Head, G.P.,Haas, J.A.,Baum, J.A.,Yang, F.,Kerns, D.L.,Jerga, A. Bacillus thuringiensis Cry1Da_7 and Cry1B.868 Protein Interactions with Novel Receptors Allow Control of Resistant Fall Armyworms, Spodoptera frugiperda (J.E. Smith). Appl.Environ.Microbiol. 2019 85 0 0 6P68 Crystal structure of FGFR1-Y563C (FGFR4 surrogate) covalently bound to compound 22. 2019-06-03 2019-06-19 Larsen, N.A. To be published To Be Published 0 0 0 0 6O10 31248989 E. coli cysteine desulfurase SufS 2019-02-17 2019-06-26 Blahut, M.,Wise, C.E.,Bruno, M.R.,Dong, G.,Makris, T.M.,Frantom, P.A.,Dunkle, J.A.,Outten, F.W. Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues. J.Biol.Chem. 2019 294 12444 12458 6O11 31248989 E. coli cysteine desulfurase SufS C364A with a Cys-aldimine intermediate 2019-02-17 2019-06-26 Blahut, M.,Wise, C.E.,Bruno, M.R.,Dong, G.,Makris, T.M.,Frantom, P.A.,Dunkle, J.A.,Outten, F.W. Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues. J.Biol.Chem. 2019 294 12444 12458 6O12 31248989 E. coli cysteine desulfurase SufS H123A 2019-02-17 2019-06-26 Blahut, M.,Wise, C.E.,Bruno, M.R.,Dong, G.,Makris, T.M.,Frantom, P.A.,Dunkle, J.A.,Outten, F.W. Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues. J.Biol.Chem. 2019 294 12444 12458 6CNG The X-ray crystal structure of the Streptococcus pneumoniae Fatty Acid Kinase (Fak) B3 protein loaded with linoleic acid to 1.47 Angstrom resolution 2018-03-08 2019-07-03 Cuypers, M.G.,Subramanian, C.,White, S.W.,Rock, C.O. The X-ray crystal structure of the Streptococcus pneumoniae Fatty Acid Kinase (Fak) B3 protein loaded with linoleic acid to 1.47 Angstrom resolution To Be Published 0 0 0 0 6J0E 31136796 Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression 2018-12-24 2019-07-03 Prabaharan, C.,Kandavelu, P.,Packianathan, C.,Rosen, B.P.,Thiyagarajan, S. 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The cell cycle-regulated DNA adenine methyltransferase CcrM opens a bubble at its DNA recognition site. Nat Commun 2019 10 4600 4600 6PGU 31649965 Crystal structure of the p300 acetyltransferase domain with allosteric inhibitor CPI-076 and CoA 2019-06-24 2019-10-23 Gardberg, A.S.,Huhn, A.J.,Cummings, R.,Bommi-Reddy, A.,Poy, F.,Setser, J.,Vivat, V.,Brucelle, F.,Wilson, J. Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT. Struct Dyn. 2019 6 54702 54702 6TZK 31604608 Bacterial cellulose synthase outermembrane channel BcsC with terminal TPR repeat 2019-08-12 2019-10-23 Acheson, J.F.,Derewenda, Z.S.,Zimmer, J. Architecture of the Cellulose Synthase Outer Membrane Channel and Its Association with the Periplasmic TPR Domain. Structure 2019 27 1855 0 6PKA 31588734 Structure of ClpP from Staphylococcus aureus in complex with ureadepsipeptide 2019-06-28 2019-11-06 Griffith, E.C.,Zhao, Y.,Singh, A.P.,Conlon, B.P.,Tangallapally, R.,Shadrick, W.R.,Liu, J.,Wallace, M.J.,Yang, L.,Elmore, J.M.,Li, Y.,Zheng, Z.,Miller, D.J.,Cheramie, M.N.,Lee, R.B.,LaFleur, M.D.,Lewis, K.,Lee, R.E. Ureadepsipeptides as ClpP Activators. Acs Infect Dis. 2019 5 1915 1925 6DB0 N-Terminal bromodomain of Human BRD2 with a Tetrahydroquinoline analogue 2018-05-02 2019-11-13 White, S.W.,Yun, M. N-Terminal bromodomain of Human BRD2 with a Tetrahydroquinoline analogue To Be Published 0 0 0 0 6DBC Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue 2018-05-03 2019-11-13 White, S.W.,Yun, M. 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Sci.Signal. 2020 13 0 0 6OYC Glycosylation Associate Protein (Gap123) complex from Streptococcus agalactiae 2019-05-14 2020-05-20 zhang, H.,Zhu, F.,Wu, H. Glycosylation Associate Protein (Gap123) complex from Streptococcus agalactiae To Be Published 0 0 0 0 6WPI 32371454 Crystal structure of Nop9 in complex with ITS1 RNA 2020-04-27 2020-05-20 Zhang, J.,Teramoto, T.,Qiu, C.,Wine, R.N.,Gonzalez, L.E.,Baserga, S.J.,Tanaka Hall, T.M. Nop9 recognizes structured and single-stranded RNA elements of preribosomal RNA. Rna 2020 26 1049 1059 6ULI 32461371 Molecular basis for tumor infiltrating TCR recognition of hotspot KRAS-G12D mutation 2019-10-08 2020-05-27 Sim, M.J.W.,Lu, J.,Spencer, M.,Hopkins, F.,Tran, E.,Rosenberg, S.A.,Long, E.O.,Sun, P.D. High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D. Proc.Natl.Acad.Sci.USA 2020 117 12826 12835 6ULK 32461371 Molecular basis for tumor infiltrating TCR recognition of hotspot KRAS-G12D mutation 2019-10-08 2020-05-27 Sim, M.J.W.,Lu, J.,Spencer, M.,Hopkins, F.,Tran, E.,Rosenberg, S.A.,Long, E.O.,Sun, P.D. High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D. Proc.Natl.Acad.Sci.USA 2020 117 12826 12835 6ULN 32461371 Molecular basis for tumor infiltrating TCR recognition of hotspot KRAS-G12D mutation 2019-10-08 2020-05-27 Sim, M.J.W.,Lu, J.,Spencer, M.,Hopkins, F.,Tran, E.,Rosenberg, S.A.,Long, E.O.,Sun, P.D. High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D. Proc.Natl.Acad.Sci.USA 2020 117 12826 12835 6ULR 32461371 Molecular basis for tumor infiltrating TCR recognition of hotspot KRAS-G12D mutation 2019-10-08 2020-05-27 Sim, M.J.W.,Lu, J.,Spencer, M.,Hopkins, F.,Tran, E.,Rosenberg, S.A.,Long, E.O.,Sun, P.D. High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D. Proc.Natl.Acad.Sci.USA 2020 117 12826 12835 6UON 32461371 Molecular basis for tumor infiltrating TCR recognition of hotspot KRAS-G12D mutation 2019-10-15 2020-05-27 Sim, M.J.W.,Lu, J.,Spencer, M.,Hopkins, F.,Tran, E.,Rosenberg, S.A.,Long, E.O.,Sun, P.D. High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D. Proc.Natl.Acad.Sci.USA 2020 117 12826 12835 6P60 Vaccine-elicited NHP FP-targeting neutralizing antibody A12V163-a.02 in complex with HIV fusion peptide (residue 512-519) 2019-05-31 2020-06-03 Xu, K.,Liu, K.,Kwong, P.D. Vaccine-elicited NHP FP-targeting neutralizing antibody A12V163-a.02 in complex with HIV fusion peptide (residue 512-519) To Be Published 0 0 0 0 6VUR 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT366 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUS 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT379 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUT 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT392 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUU 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT1347 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUW 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT368 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUX 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT388 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUY 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT358 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VUZ 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT353 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VV0 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT1354 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VV1 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT384 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VV2 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT1348 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. 2020 15 1581 1594 6VV3 32421305 Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT1358 2020-02-16 2020-06-03 Punetha, A.,Ngo, H.X.,Holbrook, S.Y.L.,Green, K.D.,Willby, M.J.,Bonnett, S.A.,Krieger, K.,Dennis, E.K.,Posey, J.E.,Parish, T.,Tsodikov, O.V.,Garneau-Tsodikova, S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. 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Structural and kinetic properties of serine hydroxymethyltransferase from the halophytic cyanobacterium Aphanothece halophytica provide a rationale for salt tolerance. Int.J.Biol.Macromol. 2020 159 517 529 6P7H Vaccine-elicited NHP FP-targeting neutralizing antibody DF2F-b.04 in complex with HIV fusion peptide (residue 512-519) 2019-06-05 2020-06-10 Xu, K.,Liu, K.,Wang, Y.,Kwong, P.D. Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies To Be Published 0 0 0 0 6P8D Vaccine-elicited murine FP-targeting antibody vFP6.01 in complex with HIV fusion peptide (residue 512-519) 2019-06-07 2020-06-10 Xu, K.,Liu, K.,Wang, Y.,Kwong, P.D. Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies To Be Published 0 0 0 0 6VIF 32631515 Human LRH-1 ligand-binding domain bound to agonist cpd 15 and fragment of coregulator TIF-2 2020-01-13 2020-06-10 Cornelison, J.L.,Cato, M.L.,Johnson, A.M.,D'Agostino, E.H.,Melchers, D.,Patel, A.B.,Mays, S.G.,Houtman, R.,Ortlund, E.A.,Jui, N.T. Development of a new class of liver receptor homolog-1 (LRH-1) agonists by photoredox conjugate addition. Bioorg.Med.Chem.Lett. 2020 30 127293 127293 6OHG 32709983 Structure of Plasmodium falciparum vaccine candidate Pfs230D1M in complex with the Fab of a transmission blocking antibody 2019-04-05 2020-06-17 Singh, K.,Burkhardt, M.,Nakuchima, S.,Herrera, R.,Muratova, O.,Gittis, A.G.,Kelnhofer, E.,Reiter, K.,Smelkinson, M.,Veltri, D.,Swihart, B.J.,Shimp Jr., R.,Nguyen, V.,Zhang, B.,MacDonald, N.J.,Duffy, P.E.,Garboczi, D.N.,Narum, D.L. Structure and function of a malaria transmission blocking vaccine targeting Pfs230 and Pfs230-Pfs48/45 proteins. Commun Biol 2020 3 395 395 6P9D 33630571 Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F variant with FAD - Yellow fraction 2019-06-10 2020-06-17 Iyer, A.,Reis, R.A.G.,Gannavaram, S.,Momin, M.,Spring-Connell, A.M.,Orozco-Gonzalez, Y.,Agniswamy, J.,Hamelberg, D.,Weber, I.T.,Gozem, S.,Wang, S.,Germann, M.W.,Gadda, G. A Single-Point Mutation in d-Arginine Dehydrogenase Unlocks a Transient Conformational State Resulting in Altered Cofactor Reactivity. Biochemistry 2021 60 711 724 6V44 The crystal structure of hemagglutinin from swine influenza virus A/swine/Missouri/A01727926/2015 2019-11-27 2020-06-17 Yang, H.,Carney, P.J.,Chang, J.,Stevens, J. 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Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins Heliyon 2020 6 0 0 6WK1 32503840 SETD3 in Complex with an Actin Peptide with His73 Replaced with Methionine 2020-04-15 2020-06-17 Dai, S.,Holt, M.V.,Horton, J.R.,Woodcock, C.B.,Patel, A.,Zhang, X.,Young, N.L.,Wilkinson, A.W.,Cheng, X. Characterization of SETD3 methyltransferase-mediated protein methionine methylation. J.Biol.Chem. 2020 295 10901 10910 6WK2 32503840 SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine 2020-04-15 2020-06-17 Dai, S.,Holt, M.V.,Horton, J.R.,Woodcock, C.B.,Patel, A.,Zhang, X.,Young, N.L.,Wilkinson, A.W.,Cheng, X. Characterization of SETD3 methyltransferase-mediated protein methionine methylation. J.Biol.Chem. 2020 295 10901 10910 6OF6 32601241 Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site 2019-03-28 2020-06-24 Nguyen, H.A.,Sunita, S.,Dunham, C.M. 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Biochemistry 2021 60 711 724 6VCE 33062180 HIV-1 wild type protease with GRL-026-18A, a crown-like tetrahydropyranotetrahydrofuran with a bridged methylene group as a P2 ligand 2019-12-20 2020-07-01 Ghosh, A.K.,Grillo, A.,Raghavaiah, J.,Kovela, S.,Johnson, M.E.,Kneller, D.W.,Wang, Y.F.,Hattori, S.I.,Higashi-Kuwata, N.,Weber, I.T.,Mitsuya, H. Design, Synthesis, and X-ray Studies of Potent HIV-1 Protease Inhibitors with P2-Carboxamide Functionalities. Acs Med.Chem.Lett. 2020 11 1965 1972 6X5N 34871450 Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail, in complex with Fab-BL-3,6 2020-05-26 2020-07-01 Swain, M.,Ageeli, A.A.,Kasprzak, W.K.,Li, M.,Miller, J.T.,Sztuba-Solinska, J.,Schneekloth, J.S.,Koirala, D.,Piccirili, J.,Fraboni, A.J.,Murelli, R.P.,Wlodawer, A.,Shapiro, B.A.,Baird, N.,Le Grice, S.F.J. Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands. 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Int.J.Biol.Macromol. 2020 152 862 872 6LVR 32719843 Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA 2020-02-04 2020-08-12 Teramoto, T.,Kaitany, K.J.,Kakuta, Y.,Kimura, M.,Fierke, C.A.,Hall, T.M.T. Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA. Nucleic Acids Res. 2020 48 11815 11826 6POO 32744258 Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin 2019-07-04 2020-08-12 Manne, K.,Chattopadhyay, D.,Agarwal, V.,Blom, A.M.,Khare, B.,Chakravarthy, S.,Chang, C.,Ton-That, H.,Narayana, S.V.L. Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin. Acta Crystallogr D Struct Biol 2020 76 759 770 6VST 32754173 Arginase from Medicago truncatula in complex with ornithine 2020-02-11 2020-08-12 Sekula, B. The Neighboring Subunit Is Engaged to Stabilize the Substrate in the Active Site of Plant Arginases. Front Plant Sci 2020 11 987 987 6VSU 32754173 Arginase from Arabidopsis thaliana in Complex with Ornithine 2020-02-11 2020-08-12 Sekula, B. The Neighboring Subunit Is Engaged to Stabilize the Substrate in the Active Site of Plant Arginases. Front Plant Sci 2020 11 987 987 6XNB 35247363 The Crystal Structure of the S154Y Mutant Carbonyl Reductase from Leifsonia xyli Explains Enhanced Activity for 3,5-Bis(trifluoromethyl)acetophenone Reduction 2020-07-02 2020-08-12 Li, J.,Dinh, T.,Phillips, R. The crystal structure of the S154Y mutant carbonyl reductase from Leifsonia xyli explains enhanced activity for 3,5-bis(trifluoromethyl)acetophenone reduction. Arch.Biochem.Biophys. 2022 720 109158 109158 6U0D Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0590 2019-08-14 2020-08-19 Liu, Z.,Li, Y.,Chen, H.,Lai, H.,Wang, P.,Wu, S.,Wold, E.A.,Leonard, P.G.,Joseph, S.,Hu, H.,Chiang, C.,Brasier, A.R.,Tian, B.,Zhou, J. Discovery, X-ray Crystallography, and Anti-inflammatory Activity of Bromodomain-containing Protein 4 (BRD4) BD1 Inhibitors Targeting a Distinct New Binding Site J. Med. Chem. 2022 0 0 0 6UJO 32807968 HHAT L75F Neoantigen Peptide KQWLVWLFL Presented by HLA-A206 2019-10-03 2020-08-19 Devlin, J.R.,Alonso, J.A.,Ayres, C.M.,Keller, G.L.J.,Bobisse, S.,Vander Kooi, C.W.,Coukos, G.,Gfeller, D.,Harari, A.,Baker, B.M. Structural dissimilarity from self drives neoepitope escape from immune tolerance. 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Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA. Nucleic Acids Res. 2020 48 10087 10100 6WY3 32941619 Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 form 2020-05-12 2020-09-02 Mao, S.,Sekula, B.,Ruszkowski, M.,Ranganathan, S.V.,Haruehanroengra, P.,Wu, Y.,Shen, F.,Sheng, J. Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA. Nucleic Acids Res. 2020 48 10087 10100 6Z18 32941619 Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 form 2020-05-12 2020-09-02 Mao, S.,Sekula, B.,Ruszkowski, M.,Ranganathan, S.V.,Haruehanroengra, P.,Wu, Y.,Shen, F.,Sheng, J. Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA. Nucleic Acids Res. 2020 48 10087 10100 6U87 34324310 Pseudomonas aeruginosa HasA mutant - Y75H 2019-09-04 2020-09-09 Dent, A.T.,Brimberry, M.,Albert, T.,Lanzilotta, W.N.,Moenne-Loccoz, P.,Wilks, A. Axial Heme Coordination by the Tyr-His Motif in the Extracellular Hemophore HasAp Is Critical for the Release of Heme to the HasR Receptor of Pseudomonas aeruginosa . Biochemistry 2021 60 2549 2559 6U9J 31652058 Crystal structure of ChuX 2019-09-09 2020-09-09 Mathew, L.G.,Beattie, N.R.,Pritchett, C.,Lanzilotta, W.N. New Insight into the Mechanism of Anaerobic Heme Degradation. Biochemistry 2019 58 4641 4654 6VL8 Anti-PEG antibody 6-3 Fab fragment in complex with PEG 2020-01-23 2020-09-09 Huckaby, J.T.,Jacobs, T.M.,Li, Z.,Perna, R.J.,Wang, A.,Nicely, N.I.,Lai, S.K. 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Structure-Based Rational Design of Two Enhanced Bacterial Lipocalin Blc Tags for Protein-PAINT Super-resolution Microscopy. Acs Chem.Biol. 2020 15 2456 2465 6URM 32877670 Crystal structure of vaccine-elicited receptor-binding site targeting antibody LPAF-a.01 in complex with Hemagglutinin H1 A/California/04/2009 2019-10-23 2020-09-16 Cheung, C.S.,Fruehwirth, A.,Paparoditis, P.C.G.,Shen, C.H.,Foglierini, M.,Joyce, M.G.,Leung, K.,Piccoli, L.,Rawi, R.,Silacci-Fregni, C.,Tsybovsky, Y.,Verardi, R.,Wang, L.,Wang, S.,Yang, E.S.,Zhang, B.,Zhang, Y.,Chuang, G.Y.,Corti, D.,Mascola, J.R.,Shapiro, L.,Kwong, P.D.,Lanzavecchia, A.,Zhou, T. Identification and Structure of a Multidonor Class of Head-Directed Influenza-Neutralizing Antibodies Reveal the Mechanism for Its Recurrent Elicitation. Cell Rep 2020 32 108088 108088 6UEU Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP 2019-09-23 2020-09-30 Walsh, A.R.,Beese, L.S.,Wu, E.Y. Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase To Be Published 0 0 0 0 6UNT 33021502 Barrier-to-autointegration factor soaked in DMSO: 1 of 14 in MSCS set 2019-10-13 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URE 33021502 Barrier-to-autointegration factor Aqueous: 1 of 14 in MSCS set 2019-10-23 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URJ 33021502 Barrier-to-autointegration factor soaked in Acetone: 1 of 14 in MSCS set 2019-10-23 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URK 33021502 Barrier-to-autointegration factor soaked in Glycerol: 1 of 14 in MSCS set 2019-10-23 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URL 33021502 Barrier-to-autointegration factor soaked in isopropanol: 1 of 14 in MSCS set 2019-10-23 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URN 33021502 Barrier-to-autointegration factor t-butanol: 1 of 14 in MSCS set 2019-10-23 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URR 33021502 Barrier-to-autointegration factor soaked in Dioxane: 1 of 14 in MSCS set 2019-10-24 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6URZ 33021502 Barrier-to-autointegration factor soaked in methanol: 1 of 14 in MSCS set 2019-10-24 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6US0 33021502 Barrier-to-autointegration factor soaked in R,S,R-bisfuranol (RSR): 1 of 14 in MSCS set 2019-10-24 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6US1 33021502 Barrier-to-autointegration factor soaked in isobutanol: 1 of 14 in MSCS set 2019-10-24 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6US7 33021502 Barrier-to-autointegration factor soaked in TMAO: 1 of 14 in MSCS set 2019-10-24 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6USB 33021502 Barrier-to-autointegration factor soaked in urea: 1 of 14 in MSCS set 2019-10-25 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6USD 33021502 Barrier-to-autointegration factor soaked in ethanol: 1 of 14 in MSCS set 2019-10-25 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallogr D Struct Biol 2020 76 1001 1014 6USI 33021502 Barrier-to-autointegration factor soaked in 1,6-hexanediol: 1 of 14 in MSCS set 2019-10-26 2020-10-07 Agarwal, S.,Smith, M.,De La Rosa, I.,Verba, K.A.,Swartz, P.,Segura-Totten, M.,Mattos, C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. 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Biochemistry 2020 0 0 0 6WMM 33229435 Human poly-N-acetyl-lactosamine synthase structure demonstrates a modular assembly of catalytic subsites for GT-A glycosyltransferases 2020-04-21 2020-12-02 Kadirvelraj, R.,Yang, J.Y.,Kim, H.W.,Sanders, J.H.,Moremen, K.W.,Wood, Z.A. Comparison of human poly-N-acetyl-lactosamine synthase structure with GT-A fold glycosyltransferases supports a modular assembly of catalytic subsites. J.Biol.Chem. 2020 296 100110 100110 6WMN 33229435 Human poly-N-acetyl-lactosamine synthase structure demonstrates a modular assembly of catalytic subsites for GT-A glycosyltransferases 2020-04-21 2020-12-02 Kadirvelraj, R.,Yang, J.Y.,Kim, H.W.,Sanders, J.H.,Moremen, K.W.,Wood, Z.A. Comparison of human poly-N-acetyl-lactosamine synthase structure with GT-A fold glycosyltransferases supports a modular assembly of catalytic subsites. 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Structural and Biochemical Insights into the Inhibition of Human Acetylcholinesterase by G-Series Nerve Agents and Subsequent Reactivation by HI-6. Chem.Res.Toxicol. 2021 34 804 816 6WVQ 33538594 Crystal Structure of Recombinant Human Acetylcholinesterase Inhibited by GP 2020-05-06 2021-02-17 McGuire, J.R.,Bester, S.M.,Guelta, M.A.,Cheung, J.,Langley, C.,Winemiller, M.D.,Bae, S.Y.,Funk, V.,Myslinski, J.M.,Pegan, S.D.,Height, J.J. Structural and Biochemical Insights into the Inhibition of Human Acetylcholinesterase by G-Series Nerve Agents and Subsequent Reactivation by HI-6. Chem.Res.Toxicol. 2021 34 804 816 6VLL The crystal structure of the 2009/H1N1/California PA endonuclease mutant I38T in complex with SJ000986213 2020-01-24 2021-02-24 Cuypers, M.G.,Slavish, P.J.,Rankovic, Z.,White, S.W. The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986213 To Be Published 0 0 0 0 6WUZ 33538594 Crystal Structure of Recombinant Human Acetylcholinesterase Inhibited by GB 2020-05-05 2021-02-24 McGuire, J.R.,Bester, S.M.,Guelta, M.A.,Cheung, J.,Langley, C.,Winemiller, M.D.,Bae, S.Y.,Funk, V.,Myslinski, J.M.,Pegan, S.D.,Height, J.J. Structural and Biochemical Insights into the Inhibition of Human Acetylcholinesterase by G-Series Nerve Agents and Subsequent Reactivation by HI-6. Chem.Res.Toxicol. 2021 34 804 816 6WWC 33649208 Vaccine-elicited mouse FP-targeting neutralizing antibody vFP16.02 with S48K mutation in light chain in complex with HIV fusion peptide (residue 512-519) 2020-05-09 2021-02-24 Madan, B.,Zhang, B.,Xu, K.,Chao, C.W.,O'Dell, S.,Wolfe, J.R.,Chuang, G.Y.,Fahad, A.S.,Geng, H.,Kong, R.,Louder, M.K.,Nguyen, T.D.,Rawi, R.,Schon, A.,Sheng, Z.,Nimrania, R.,Wang, Y.,Zhou, T.,Lin, B.C.,Doria-Rose, N.A.,Shapiro, L.,Kwong, P.D.,DeKosky, B.J. 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Faseb J. 2021 35 0 0 6WOB 33475202 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 4-diphosphoinositol pentakisphosphate (4-IP7), Mg, and Fluoride ion 2020-04-24 2021-03-03 Zong, G.,Jork, N.,Hostachy, S.,Fiedler, D.,Jessen, H.J.,Shears, S.B.,Wang, H. New structural insights reveal an expanded reaction cycle for inositol pyrophosphate hydrolysis by human DIPP1. Faseb J. 2021 35 0 0 6WOC 33475202 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol pentakisphosphate and Mg, presoaked with 5-IP7, Mg and Fluoride, soaking 1min in the absence of Fluoride. 2020-04-24 2021-03-03 Zong, G.,Jork, N.,Hostachy, S.,Fiedler, D.,Jessen, H.J.,Shears, S.B.,Wang, H. New structural insights reveal an expanded reaction cycle for inositol pyrophosphate hydrolysis by human DIPP1. 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Immunity 2021 54 324 0 7JKT 33453152 Crystal structure of vaccine-elicited broadly neutralizing VRC01-class antibody 2413a in complex with HIV-1 gp120 core 2020-07-28 2021-06-09 Chen, X.,Zhou, T.,Schmidt, S.D.,Duan, H.,Cheng, C.,Chuang, G.Y.,Gu, Y.,Louder, M.K.,Lin, B.C.,Shen, C.H.,Sheng, Z.,Zheng, M.X.,Doria-Rose, N.A.,Joyce, M.G.,Shapiro, L.,Tian, M.,Alt, F.W.,Kwong, P.D.,Mascola, J.R. Vaccination induces maturation in a mouse model of diverse unmutated VRC01-class precursors to HIV-neutralizing antibodies with >50% breadth. Immunity 2021 54 324 0 7KYQ 33452718 Crystal structure of human BCCIP beta (Native1) 2020-12-08 2021-06-09 Choi, W.S.,Liu, B.,Shen, Z.,Yang, W. Structure of human BCCIP and implications for binding and modification of partner proteins. Protein Sci. 2021 30 693 699 7LC0 33949189 Structure of D-Glucosaminate-6-phosphate Ammonia-lyase 2021-01-09 2021-06-09 Phillips, R.S.,Ting, S.C.,Anderson, K. Structure and Mechanism of d-Glucosaminate-6-phosphate Ammonia-lyase: A Novel Octameric Assembly for a Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of a d-Amino Acid. Biochemistry 2021 60 1609 1618 7LCE 33949189 Structure of D-Glucosaminate-6-phosphate Ammonia-lyase 2021-01-10 2021-06-09 Phillips, R.S.,Ting, S.C.,Anderson, K. Structure and Mechanism of d-Glucosaminate-6-phosphate Ammonia-lyase: A Novel Octameric Assembly for a Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of a d-Amino Acid. Biochemistry 2021 60 1609 1618 6P5Z 32054833 Cobalt-sirohydrochlorin-bound S. typhimurium siroheme synthase 2019-05-31 2021-06-16 Pennington, J.M.,Kemp, M.,McGarry, L.,Chen, Y.,Stroupe, M.E. Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site. Nat Commun 2020 11 864 864 6WNZ Structure of a dimer of the Sulfolobus solfataricus MCM N-terminal domain reveals potential role in MCM ring opening 2020-04-23 2021-06-16 Meagher, M.,Spence, M.N.,Enemark, E.J. Structure of a dimer of the Sulfolobus solfataricus MCM N-terminal domain reveals a potential role in MCM ring opening Acta Crystallogr.,Sect.F 2021 77 177 186 6XCK 35487149 Crystal structure of C-As lyase with mutation K105E 2020-06-08 2021-06-16 Nadar, V.S.,Kandavelu, P.,Sankaran, B.,Rosen, B.P.,Yoshinaga, M. The ArsI C-As lyase: Elucidating the catalytic mechanism of degradation of organoarsenicals. J.Inorg.Biochem. 2022 232 111836 111836 6ZQO 34136094 EYFP mutant - F165G 2020-07-10 2021-06-16 Pletneva, N.V.,Maksimov, E.G.,Protasova, E.A.,Mamontova, A.V.,Simonyan, T.R.,Ziganshin, R.H.,Lukyanov, K.A.,Muslinkina, L.,Pletnev, S.,Bogdanov, A.M.,Pletnev, V.Z. Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design. Comput Struct Biotechnol J 2021 19 2950 2959 7DF5 33988358 Human Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor 2020-11-06 2021-06-23 Xu, L.,Hartz, R.A.,Beno, B.R.,Ghosh, K.,Shukla, J.K.,Kumar, A.,Patel, D.,Kalidindi, N.,Lemos, N.,Gautam, S.S.,Kumar, A.,Ellsworth, B.A.,Shah, D.,Sale, H.,Cheng, D.,Regueiro-Ren, A. Synthesis, Structure-Activity Relationships, and In Vivo Evaluation of Novel Tetrahydropyran-Based Thiodisaccharide Mimics as Galectin-3 Inhibitors. J.Med.Chem. 2021 64 6634 6655 7DF6 33988358 Mouse Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor 2020-11-06 2021-06-23 Xu, L.,Hartz, R.A.,Beno, B.R.,Ghosh, K.,Shukla, J.K.,Kumar, A.,Patel, D.,Kalidindi, N.,Lemos, N.,Gautam, S.S.,Kumar, A.,Ellsworth, B.A.,Shah, D.,Sale, H.,Cheng, D.,Regueiro-Ren, A. 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Mbio 2021 12 0 0 7L6X 35191694 Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to GNE-371 2020-12-24 2021-06-30 Karim, R.M.,Yang, L.,Chen, L.,Bikowitz, M.J.,Lu, J.,Grassie, D.,Shultz, Z.P.,Lopchuk, J.M.,Chen, J.,Schonbrunn, E. Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain. J.Med.Chem. 2022 65 4182 4200 7MIE 34117751 Crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP 2021-04-16 2021-06-30 Singh, A.,Izac, J.R.,Schuler, E.J.A.,Patel, D.T.,Davies, C.,Marconi, R.T. High-resolution crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP: new insights into the interaction of c-di-GMP with the novel xPilZ domain. Pathog Dis 2021 79 0 0 6X9I 34790902 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA 2020-06-02 2021-07-07 Pappalardi, M.B.,Keenan, K.,Cockerill, M.,Kellner, W.A.,Stowell, A.,Sherk, C.,Wong, K.,Pathuri, S.,Briand, J.,Steidel, M.,Chapman, P.,Groy, A.,Wiseman, A.K.,McHugh, C.F.,Campobasso, N.,Graves, A.P.,Fairweather, E.,Werner, T.,Raoof, A.,Butlin, R.J.,Rueda, L.,Horton, J.R.,Fosbenner, D.T.,Zhang, C.,Handler, J.L.,Muliaditan, M.,Mebrahtu, M.,Jaworski, J.P.,McNulty, D.E.,Burt, C.,Eberl, H.C.,Taylor, A.N.,Ho, T.,Merrihew, S.,Foley, S.W.,Rutkowska, A.,Li, M.,Romeril, S.P.,Goldberg, K.,Zhang, X.,Kershaw, C.S.,Bantscheff, M.,Jurewicz, A.J.,Minthorn, E.,Grandi, P.,Patel, M.,Benowitz, A.B.,Mohammad, H.P.,Gilmartin, A.G.,Prinjha, R.K.,Ogilvie, D.,Carpenter, C.,Heerding, D.,Baylin, S.B.,Jones, P.A.,Cheng, X.,King, B.W.,Luengo, J.I.,Jordan, A.M.,Waddell, I.,Kruger, R.G.,McCabe, M.T. Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia. 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Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia. Nat Cancer 2021 2 1002 1017 6X9K 34790902 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3685032A 2020-06-02 2021-07-07 Pappalardi, M.B.,Keenan, K.,Cockerill, M.,Kellner, W.A.,Stowell, A.,Sherk, C.,Wong, K.,Pathuri, S.,Briand, J.,Steidel, M.,Chapman, P.,Groy, A.,Wiseman, A.K.,McHugh, C.F.,Campobasso, N.,Graves, A.P.,Fairweather, E.,Werner, T.,Raoof, A.,Butlin, R.J.,Rueda, L.,Horton, J.R.,Fosbenner, D.T.,Zhang, C.,Handler, J.L.,Muliaditan, M.,Mebrahtu, M.,Jaworski, J.P.,McNulty, D.E.,Burt, C.,Eberl, H.C.,Taylor, A.N.,Ho, T.,Merrihew, S.,Foley, S.W.,Rutkowska, A.,Li, M.,Romeril, S.P.,Goldberg, K.,Zhang, X.,Kershaw, C.S.,Bantscheff, M.,Jurewicz, A.J.,Minthorn, E.,Grandi, P.,Patel, M.,Benowitz, A.B.,Mohammad, H.P.,Gilmartin, A.G.,Prinjha, R.K.,Ogilvie, D.,Carpenter, C.,Heerding, D.,Baylin, S.B.,Jones, P.A.,Cheng, X.,King, B.W.,Luengo, J.I.,Jordan, A.M.,Waddell, I.,Kruger, R.G.,McCabe, M.T. Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia. Nat Cancer 2021 2 1002 1017 6XM2 34349032 The structure of the 4A11.v7 antibody in complex with human TGFb2 2020-06-29 2021-07-07 Sun, T.,Huang, Z.,Liang, W.C.,Yin, J.,Lin, W.Y.,Wu, J.,Vernes, J.M.,Lutman, J.,Caplazi, P.,Jeet, S.,Wong, T.,Wong, M.,DePianto, D.J.,Morshead, K.B.,Sun, K.H.,Modrusan, Z.,Vander Heiden, J.A.,Abbas, A.R.,Zhang, H.,Xu, M.,N'Diaye, E.N.,Roose-Girma, M.,Wolters, P.J.,Yadav, R.,Sukumaran, S.,Ghilardi, N.,Corpuz, R.,Emson, C.,Meng, Y.G.,Ramalingam, T.R.,Lupardus, P.,Brightbill, H.D.,Seshasayee, D.,Wu, Y.,Arron, J.R. TGF beta 2 and TGF beta 3 isoforms drive fibrotic disease pathogenesis. Sci Transl Med 2021 13 0 0 7L9J 34710325 Crystal structure of the second bromodomain (BD2) of human BRD2 bound to Ro3280 2021-01-04 2021-07-07 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7L9K 34710325 Crystal structure of the second bromodomain (BD2) of human BRD2 bound to LRRK2-IN-1 2021-01-04 2021-07-07 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7KWA 33945681 Structure of DCN1 bound to N-((4S,5S)-3-(aminomethyl)-7-ethyl-4-(4-fluorophenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-(trifluoromethyl)benzamide 2020-11-30 2021-07-14 Kim, H.S.,Hammill, J.T.,Scott, D.C.,Chen, Y.,Rice, A.L.,Pistel, W.,Singh, B.,Schulman, B.A.,Guy, R.K. Improvement of Oral Bioavailability of Pyrazolo-Pyridone Inhibitors of the Interaction of DCN1/2 and UBE2M. J.Med.Chem. 2021 64 5850 5862 7LAY 34710325 Crystal structure of the first bromodomain (BD1) of human BRD3 bound to SG3-179 2021-01-07 2021-07-14 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7LAZ 34710325 Crystal structure of the first bromodomain (BD1) of human BRD3 bound to ERK5-IN-1 2021-01-07 2021-07-14 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7LB1 Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-585 2021-01-07 2021-07-14 Karim, M.R.,Schonbrunn, E. Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-585 To Be Published 0 0 0 0 7LB2 Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-589 2021-01-07 2021-07-14 Karim, M.R.,Schonbrunn, E. Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-589 To Be Published 0 0 0 0 7LB4 34710325 Crystal structure of the second bromodomain (BD2) of human BRD3 bound to bromosporine 2021-01-07 2021-07-14 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7LEM 34710325 Crystal structure of the first bromodomain (BD1) of human BRDT bound to LRRK2-IN-1 2021-01-14 2021-07-14 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7MF7 34200826 Crystal structure of antibody 10E8v4-P100gA Fab 2021-04-08 2021-07-14 Do Kwon, Y.,Wang, X.E.,Bender, M.F.,Yang, R.,Li, Y.,McKee, K.,Rawi, R.,O'Dell, S.,Schneck, N.A.,Shaddeau, A.,Zhang, B.,Arnold, F.J.,Connors, M.,Doria-Rose, N.A.,Kwong, P.D.,Lei, Q.P. Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography. Antibodies 2021 10 0 0 7MF8 34200826 Crystal structure of antibody 10E8v4-P100fA Fab in space group P6422 2021-04-08 2021-07-14 Do Kwon, Y.,Wang, X.E.,Bender, M.F.,Yang, R.,Li, Y.,McKee, K.,Rawi, R.,O'Dell, S.,Schneck, N.A.,Shaddeau, A.,Zhang, B.,Arnold, F.J.,Connors, M.,Doria-Rose, N.A.,Kwong, P.D.,Lei, Q.P. Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography. Antibodies 2021 10 0 0 7MF9 34200826 Crystal structure of antibody 10E8v4-P100fA Fab in space group C2 2021-04-08 2021-07-14 Do Kwon, Y.,Wang, X.E.,Bender, M.F.,Yang, R.,Li, Y.,McKee, K.,Rawi, R.,O'Dell, S.,Schneck, N.A.,Shaddeau, A.,Zhang, B.,Arnold, F.J.,Connors, M.,Doria-Rose, N.A.,Kwong, P.D.,Lei, Q.P. Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography. Antibodies 2021 10 0 0 7MFA 34200826 Crystal structure of antibody 10E8v4-P100fA+P100gA Fab 2021-04-08 2021-07-14 Do Kwon, Y.,Wang, X.E.,Bender, M.F.,Yang, R.,Li, Y.,McKee, K.,Rawi, R.,O'Dell, S.,Schneck, N.A.,Shaddeau, A.,Zhang, B.,Arnold, F.J.,Connors, M.,Doria-Rose, N.A.,Kwong, P.D.,Lei, Q.P. Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography. Antibodies 2021 10 0 0 7MFB 34200826 Crystal structure of antibody 10E8v4 Fab - light chain H31F variant 2021-04-08 2021-07-14 Do Kwon, Y.,Wang, X.E.,Bender, M.F.,Yang, R.,Li, Y.,McKee, K.,Rawi, R.,O'Dell, S.,Schneck, N.A.,Shaddeau, A.,Zhang, B.,Arnold, F.J.,Connors, M.,Doria-Rose, N.A.,Kwong, P.D.,Lei, Q.P. Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography. Antibodies 2021 10 0 0 6XQX 34529975 Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae with the H514A mutation at pH 7.5 2020-07-10 2021-07-21 Fenton, B.A.,Tomberg, J.,Sciandra, C.A.,Nicholas, R.A.,Davies, C.,Zhou, P. Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state. J.Biol.Chem. 2021 297 101188 101188 7JOD Crytsal structure of BbKI complexed with Human Kallikrein 4 2020-08-06 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI Acta Crystallogr.,Sect.D 2021 77 1084 1098 7JOE Crystal structure of BbKI complexed with Human Kallikrein 4 2020-08-06 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI Acta Crystallogr.,Sect.D 2021 77 1084 1098 7JOS Crystal structure of BbKI complexed with Human Kallikrein 4 2020-08-07 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI Acta Crystallogr.,Sect.D 2021 77 1084 1098 7JOW Crystal structure of BbKI complexed with Human Kallikrein 4 2020-08-07 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI Acta Crystallogr.,Sect.D 2021 77 1084 1098 7JQK 34342281 Crystal structure of the R64A mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JQN 34342281 Crystal structure of the R64M mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JQO 34342281 Crystal structure of the R64D mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JQV 34342281 Crystal structure of the R64F mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JR1 34342281 Crystal structure of the R64F mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Bovine Trypsin 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JR2 34342281 Crystal structure of the R64M mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Bovine Trypsin 2020-08-11 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7JRX 34342281 Crystal structure of the R64F mutant of Bauhinia Bauhinioides complexed with Bovine Chymotrypsin 2020-08-13 2021-07-21 Li, M.,Srp, J.,Mares, M.,Wlodawer, A.,Gustchina, A. Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Acta Crystallogr D Struct Biol 2021 77 1084 1098 7REK Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-086 2021-07-13 2021-07-21 Karim, M.R.,Schonbrunn, E. Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-086 To Be Published 0 0 0 0 7REL Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-060 2021-07-13 2021-07-21 Karim, M.R.,Schonbrunn, E. Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-060 To Be Published 0 0 0 0 7REM Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor PN1-050 2021-07-13 2021-07-21 Karim, M.R.,Schonbrunn, E. Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor PN1-050 To Be Published 0 0 0 0 7MYP 34111669 Crystal Structure of HIV-1 PRS17 with GRL-44-10A 2021-05-21 2021-07-28 Agniswamy, J.,Kneller, D.W.,Ghosh, A.K.,Weber, I.T. Novel HIV PR inhibitors with C4-substituted bis-THF and bis-fluoro-benzyl target the two active site mutations of highly drug resistant mutant PR S17 . Biochem.Biophys.Res.Commun. 2021 566 30 35 7MYY 34111669 Crystal Structure of HIV-1 PRS17 with GRL-142 2021-05-22 2021-07-28 Agniswamy, J.,Kneller, D.W.,Ghosh, A.K.,Weber, I.T. Novel HIV PR inhibitors with C4-substituted bis-THF and bis-fluoro-benzyl target the two active site mutations of highly drug resistant mutant PR S17 . Biochem.Biophys.Res.Commun. 2021 566 30 35 7LF7 34316015 Fab 6D12 bound to ApoL1 NTD 2021-01-15 2021-08-04 Ultsch, M.,Holliday, M.J.,Gerhardy, S.,Moran, P.,Scales, S.J.,Gupta, N.,Oltrabella, F.,Chiu, C.,Fairbrother, W.,Eigenbrot, C.,Kirchhofer, D. Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif. Commun Biol 2021 4 916 916 7LWH 34337379 Human neurofibromin 2/merlin residues 1-339 in complex with LATS1 2021-03-01 2021-08-11 Primi, M.C.,Rangarajan, E.S.,Patil, D.N.,Izard, T. Conformational flexibility determines the Nf2/merlin tumor suppressor functions. Matrix Biol Plus 2021 12 100074 100074 7MRL 34384537 Structure of HIV-1 matrix domain bound to human tRNALys3 2021-05-07 2021-08-11 Bou-Nader, C.,Muecksch, F.,Brown, J.B.,Gordon, J.M.,York, A.,Peng, C.,Ghirlando, R.,Summers, M.F.,Bieniasz, P.D.,Zhang, J. HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization. Cell Host Microbe 2021 29 1421 0 7RNU nSH2 domain of p85-beta subunit of phosphatidylinositol 3-kinase in complex with an actin peptide with phosphorylated tyrosine 53 2021-07-29 2021-08-11 Amelie, A.,Dai, S.,Shen, X.,Horton, J.R.,Zhang, X.,Cheng, X. The Functional Analysis of a Major Tyrosine Phosphorylation Site on Actin To Be Published 0 0 0 0 7BJY 34710325 Crystal structure of the first bromodomain (BD1) of human BRDT bound to Ro3280 2021-01-14 2021-08-25 Karim, R.M.,Bikowitz, M.J.,Chan, A.,Zhu, J.Y.,Grassie, D.,Becker, A.,Berndt, N.,Gunawan, S.,Lawrence, N.J.,Schonbrunn, E. Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. 2021 64 15772 15786 7JTC Crystal structure of the second bromodomain (BD2) of human TAF1 bound to ZS1-322 2020-08-17 2021-08-25 Karim, M.R.,Schonbrunn, E. Crystal structure of the second bromodomain (BD2) of human TAF1 bound to ZS1-322 To Be Published 0 0 0 0 7ME2 YfeA oligomer crystal 2, form 2 2021-04-06 2021-08-25 Radka, C.D.,Aller, S.G. Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site Acta Crystallogr.,Sect.F 2021 77 286 293 7ME3 YfeA oligomer crystal 3, form 2 2021-04-06 2021-08-25 Radka, C.D.,Aller, S.G. Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site Acta Crystallogr.,Sect.F 2021 77 286 293 7N5S 34592153 ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 6) 2021-06-06 2021-08-25 Yang, Y.,Ren, R.,Ly, L.C.,Horton, J.R.,Li, F.,Quinlan, K.G.R.,Crossley, M.,Shi, Y.,Cheng, X. Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep 2021 36 109759 109759 7N5T 34592153 ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 5) 2021-06-06 2021-08-25 Yang, Y.,Ren, R.,Ly, L.C.,Horton, J.R.,Li, F.,Quinlan, K.G.R.,Crossley, M.,Shi, Y.,Cheng, X. Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep 2021 36 109759 109759 6VEZ DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min) To be published 0 0 0 0 6VF0 DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min) To be published 0 0 0 0 6VF1 DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min) To be published 0 0 0 0 6VF2 DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min) To be published 0 0 0 0 6VF3 DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min) To be published 0 0 0 0 6VF4 DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min) To be published 0 0 0 0 6VF5 DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min) To be published 0 0 0 0 6VF6 DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min) To be published 0 0 0 0 6VF7 DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min) To be published 0 0 0 0 6VF8 DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min) To be published 0 0 0 0 6VF9 DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min) To be published 0 0 0 0 6VFA DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min) To be published 0 0 0 0 6VFB DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min) To be published 0 0 0 0 6VFC DNA Polymerase Mu, 8-oxorGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (2160 min) 2020-01-03 2021-09-01 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. DNA Polymerase Mu, 8-oxorGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (2160 min) To be published 0 0 0 0 7M5U 34415726 Crystal structure of human MPP8 chromodomain in complex with peptidomimetic ligand UNC5246 2021-03-24 2021-09-01 Waybright, J.M.,Clinkscales, S.E.,Barnash, K.D.,Budziszewski, G.R.,Rectenwald, J.M.,Chiarella, A.M.,Norris-Drouin, J.L.,Cholensky, S.H.,Pearce, K.H.,Herring, L.E.,McGinty, R.K.,Hathaway, N.A.,James, L.I. A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex. Acs Chem.Biol. 2021 16 1721 1736 7REE High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to YM2-059 2021-07-12 2021-09-01 Karim, M.R.,Schonbrunn, E. High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to YM2-059. To Be Published 0 0 0 0 7L0O 34473090 Streptococcus gordonii C123 Domain(s)-Structural and Functional Analysis 2020-12-11 2021-09-08 Schormann, N.,Purushotham, S.,Mieher, J.L.,Patel, M.,Wu, H.,Deivanayagam, C. Structural and functional analysis of the C-terminal region of Streptococcus gordonii SspB. Acta Crystallogr D Struct Biol 2021 77 1206 1215 7LHY 34473995 Caenorhabditis elegans SWSN-4 (SMARCA4-BRG1) ATPase Bromodomain in complex with a modified histone H3, N6-epsilon-acetyl-L-lysine 14 (H3K14ac) polypeptide 2021-01-26 2021-09-08 Enriquez, P.,Krajewski, K.,Strahl, B.D.,Rothbart, S.B.,Dowen, R.H.,Rose, R.B. Binding specificity and function of the SWI/SNF subunit SMARCA4 bromodomain interaction with acetylated histone H3K14. J.Biol.Chem. 2021 297 101145 101145 7MMN 34420474 Crystal Structure of the Prefusion RSV F Glycoprotein bound by human antibody AM14 2021-04-29 2021-09-08 Harshbarger, W.,Abeyrathne, P.D.,Tian, S.,Huang, Y.,Chandramouli, S.,Bottomley, M.J.,Malito, E. Improved epitope resolution of the prefusion trimer-specific antibody AM14 bound to the RSV F glycoprotein. Mabs 2021 13 1955812 1955812 7N6T 34419931 Crystal structure of inhibitor-free HIV-1 PRS17 revertant mutant PRS17 V48G 2021-06-09 2021-09-08 Burnaman, S.H.,Kneller, D.W.,Wang, Y.F.,Kovalevsky, A.,Weber, I.T. Revertant mutation V48G alters conformational dynamics of highly drug resistant HIV protease PRS17. J.Mol.Graph.Model. 2021 108 108005 108005 7N6V 34419931 Crystal structure of HIV-1 Protease multiple mutants PRS17 with Revertant mutation V48G bound to inhibitor Amprenavir 2021-06-09 2021-09-08 Burnaman, S.H.,Kneller, D.W.,Wang, Y.F.,Kovalevsky, A.,Weber, I.T. Revertant mutation V48G alters conformational dynamics of highly drug resistant HIV protease PRS17. J.Mol.Graph.Model. 2021 108 108005 108005 7N6X 34419931 Crystal structure of HIV-1 Protease multiple mutants PRS17 bound to inhibitor Amprenavir 2021-06-09 2021-09-08 Burnaman, S.H.,Kneller, D.W.,Wang, Y.F.,Kovalevsky, A.,Weber, I.T. Revertant mutation V48G alters conformational dynamics of highly drug resistant HIV protease PRS17. J.Mol.Graph.Model. 2021 108 108005 108005 7RN1 34860011 Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-62-2R 2021-07-28 2021-09-08 Ma, C.,Xia, Z.,Sacco, M.D.,Hu, Y.,Townsend, J.A.,Meng, X.,Choza, J.,Tan, H.,Jang, J.,Gongora, M.V.,Zhang, X.,Zhang, F.,Xiang, Y.,Marty, M.T.,Chen, Y.,Wang, J. Discovery of Di- and Trihaloacetamides as Covalent SARS-CoV-2 Main Protease Inhibitors with High Target Specificity. J.Am.Chem.Soc. 2021 143 20697 20709 7RRY 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-20 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RRZ 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-30 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RS0 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-18 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RS1 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-21 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RS2 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-23 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RS3 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-29 2021-08-10 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7RS9 34452998 Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-25 2021-08-11 2021-09-08 Min, J.,Nwachukwu, J.C.,Min, C.K.,Njeri, J.W.,Srinivasan, S.,Rangarajan, E.S.,Nettles, C.C.,Sanabria Guillen, V.,Ziegler, Y.,Yan, S.,Carlson, K.E.,Hou, Y.,Kim, S.H.,Novick, S.,Pascal, B.D.,Houtman, R.,Griffin, P.R.,Izard, T.,Katzenellenbogen, B.S.,Katzenellenbogen, J.A.,Nettles, K.W. Dual-mechanism estrogen receptor inhibitors. Proc.Natl.Acad.Sci.USA 2021 118 0 0 7LUS 34877503 IgG2 Fc Charge Pair Mutation version 1 (CPMv1) 2021-02-23 2021-09-15 Estes, B.,Sudom, A.,Gong, D.,Whittington, D.A.,Li, V.,Mohr, C.,Li, D.,Riley, T.P.,Shi, S.D.,Zhang, J.,Garces, F.,Wang, Z. Next generation Fc scaffold for multispecific antibodies. Iscience 2021 24 103447 103447 7MWS 34526719 Crystal structure of tamarin CD81 large extracellular loop 2021-05-17 2021-09-15 Kumar, A.,Hossain, R.A.,Yost, S.A.,Bu, W.,Wang, Y.,Dearborn, A.D.,Grakoui, A.,Cohen, J.I.,Marcotrigiano, J. Structural insights into hepatitis C virus receptor binding and entry. Nature 2021 598 521 525 7MWX 34526719 Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2 with tamarin CD81 2021-05-17 2021-09-15 Kumar, A.,Hossain, R.A.,Yost, S.A.,Bu, W.,Wang, Y.,Dearborn, A.D.,Grakoui, A.,Cohen, J.I.,Marcotrigiano, J. Structural insights into hepatitis C virus receptor binding and entry. Nature 2021 598 521 525 7RFK 34523387 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor Sinefungin 2021-07-14 2021-09-15 Zhou, J.,Horton, J.R.,Yu, D.,Ren, R.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics 2022 17 970 981 7RFL 34523387 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC0946 2021-07-14 2021-09-15 Zhou, J.,Horton, J.R.,Yu, D.,Ren, R.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics 2022 17 970 981 7RFM 34523387 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor EPZ004777 2021-07-14 2021-09-15 Zhou, J.,Horton, J.R.,Yu, D.,Ren, R.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics 2022 17 970 981 7RFN 34523387 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC8158 2021-07-14 2021-09-15 Zhou, J.,Horton, J.R.,Yu, D.,Ren, R.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics 2022 17 970 981 7K0D 35191694 Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to mTORC1/2 inhibitor AZD3147 2020-09-04 2021-09-22 Karim, R.M.,Yang, L.,Chen, L.,Bikowitz, M.J.,Lu, J.,Grassie, D.,Shultz, Z.P.,Lopchuk, J.M.,Chen, J.,Schonbrunn, E. Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain. J.Med.Chem. 2022 65 4182 4200 7K1P 35191694 Crystal structure of the second bromodomain (BD2) of human TAF1 bound to bromosporine 2020-09-08 2021-09-22 Karim, R.M.,Yang, L.,Chen, L.,Bikowitz, M.J.,Lu, J.,Grassie, D.,Shultz, Z.P.,Lopchuk, J.M.,Chen, J.,Schonbrunn, E. Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain. J.Med.Chem. 2022 65 4182 4200 7K27 35191694 Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ATR inhibitor AZ20 2020-09-08 2021-09-22 Karim, R.M.,Yang, L.,Chen, L.,Bikowitz, M.J.,Lu, J.,Grassie, D.,Shultz, Z.P.,Lopchuk, J.M.,Chen, J.,Schonbrunn, E. Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain. 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Plos Pathog. 2022 18 0 0 7LKB 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m42.127 2021-02-02 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7LKG 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.151 2021-02-02 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RAJ 34788599 Structure of PfCSP peptide 21 with antibody iGL-CIS43.D3 2021-07-01 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RCS 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.160 2021-07-08 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RD3 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m42.126 2021-07-09 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RD4 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.149 2021-07-09 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RD9 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.159 2021-07-09 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7RDA 34788599 Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.138 2021-07-09 2021-12-15 Kratochvil, S.,Shen, C.H.,Lin, Y.C.,Xu, K.,Nair, U.,Da Silva Pereira, L.,Tripathi, P.,Arnold, J.,Chuang, G.Y.,Melzi, E.,Schon, A.,Zhang, B.,Dillon, M.,Bonilla, B.,Flynn, B.J.,Kirsch, K.H.,Kisalu, N.K.,Kiyuka, P.K.,Liu, T.,Ou, L.,Pancera, M.,Rawi, R.,Reveiz, M.,Seignon, K.,Wang, L.T.,Waring, M.T.,Warner, J.,Yang, Y.,Francica, J.R.,Idris, A.H.,Seder, R.A.,Kwong, P.D.,Batista, F.D. Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies. Immunity 2021 54 2859 0 7S0R 35110419 Crystal Structure of a Complement Factor H-binding Fragment within the B75KN Region of the Group B Streptococcus Beta Antigen C Protein 2021-08-31 2021-12-15 Xu, X.,Lewis Marffy, A.L.,Keightley, A.,McCarthy, A.J.,Geisbrecht, B.V. Group B Streptococcus Surface Protein beta : Structural Characterization of a Complement Factor H-Binding Motif and Its Contribution to Immune Evasion. J Immunol. 2022 208 1232 1247 7MJ5 34688666 complex of human thrombin with XC-43 2021-04-19 2021-12-22 Lu, S.,Tirloni, L.,Oliveira, M.B.,Bosio, C.F.,Nardone, G.A.,Zhang, Y.,Hinnebusch, B.J.,Ribeiro, J.M.,Andersen, J.F. Identification of a substrate-like cleavage-resistant thrombin inhibitor from the saliva of the flea Xenopsylla cheopis. J.Biol.Chem. 2021 297 101322 101322 7RDF 34864048 Crystal structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F co-crystallized in the presence of D-arginine 2021-07-09 2021-12-22 Iyer, A.,Reis, R.A.G.,Agniswamy, J.,Weber, I.T.,Gadda, G. Discovery of a new flavin N5-adduct in a tyrosine to phenylalanine variant of d-Arginine dehydrogenase. Arch.Biochem.Biophys. 2021 715 109100 109100 7RTX 34866600 Actophorin grown in microgravity 2021-08-16 2021-12-22 Quirk, S.,Lieberman, R.L. Improved resolution crystal structure of Acanthamoeba actophorin reveals structural plasticity not induced by microgravity. Acta Crystallogr.,Sect.F 2021 77 452 458 7V63 Structure of dimeric uPAR at low pH 2021-08-19 2021-12-22 Yu, S.,Sui, Y.,Wang, J.,Li, Y.,Li, H.,Cao, Y.,Chen, L.,Jiang, L.,Yuan, C.,Huang, M. Crystal structure and cellular functions of uPAR dimer Nat Commun 2022 13 1665 0 7S02 34908132 Crystal structure of FBF-2 in complex with LST-1 site A peptide and FBE RNA 2021-08-28 2021-12-29 Qiu, C.,Wine, R.N.,Campbell, Z.T.,Hall, T.M.T. Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal. Nucleic Acids Res. 2022 50 536 548 7MQY 34958801 Zebrafish CNTN4 APLP2 complex 2021-05-07 2022-01-05 Karuppan, S.J.,Vogt, A.,Fischer, Z.,Ladutska, A.,Swiastyn, J.,McGraw, H.F.,Bouyain, S. Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem. 2021 298 101541 101541 7MRK 34958801 Chicken CNTN4 APP complex 2021-05-07 2022-01-05 Karuppan, S.J.,Vogt, A.,Fischer, Z.,Ladutska, A.,Swiastyn, J.,McGraw, H.F.,Bouyain, S. Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem. 2021 298 101541 101541 7MRM 34958801 Chicken CNTN3 APP complex 2021-05-07 2022-01-05 Karuppan, S.J.,Vogt, A.,Fischer, Z.,Ladutska, A.,Swiastyn, J.,McGraw, H.F.,Bouyain, S. Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem. 2021 298 101541 101541 7MRO 34958801 Zebrafish CNTN4 FN1-FN3 domains 2021-05-07 2022-01-05 Karuppan, S.J.,Vogt, A.,Fischer, Z.,Ladutska, A.,Swiastyn, J.,McGraw, H.F.,Bouyain, S. Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem. 2021 298 101541 101541 7MRS 34958801 Zebrafish CNTN4 APPb complex 2021-05-09 2022-01-05 Karuppan, S.J.,Vogt, A.,Fischer, Z.,Ladutska, A.,Swiastyn, J.,McGraw, H.F.,Bouyain, S. Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem. 2021 298 101541 101541 7L9M 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with bivalent inhibitor GXH-II-083 2021-01-04 2022-01-12 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7LL4 High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to PN5-114. 2021-02-03 2022-01-12 Karim, M.R.,Schonbrunn, E. High-resolution crystal structure of human Janus Kinase 2 kinase domain (JH1) bound to PN5-114. To Be Published 0 0 0 0 7LL5 High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to PN5-150. 2021-02-03 2022-01-12 Karim, M.R.,Schonbrunn, E. High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to PN5-150. To Be Published 0 0 0 0 7M5A 35017502 Crystal Structure of human BAK in complex with W3W5_BID 2021-03-23 2022-01-12 Singh, G.,Guibao, C.D.,Seetharaman, J.,Aggarwal, A.,Grace, C.R.,McNamara, D.E.,Vaithiyalingam, S.,Waddell, M.B.,Moldoveanu, T. Structural basis of BAK activation in mitochondrial apoptosis initiation. Nat Commun 2022 13 250 250 7M5B 35017502 Crystal Structure of human BAK in complex with M3W5_BID 2021-03-23 2022-01-12 Singh, G.,Guibao, C.D.,Seetharaman, J.,Aggarwal, A.,Grace, C.R.,McNamara, D.E.,Vaithiyalingam, S.,Waddell, M.B.,Moldoveanu, T. Structural basis of BAK activation in mitochondrial apoptosis initiation. Nat Commun 2022 13 250 250 7RTG 34981765 Crystal Structure of the Human Adenosine Deaminase 1 2021-08-13 2022-01-12 Ma, M.T.,Jennings, M.R.,Blazeck, J.,Lieberman, R.L. Catalytically active holo Homo sapiens adenosine deaminase I adopts a closed conformation. Acta Crystallogr D Struct Biol 2022 78 91 103 7T0R 34896364 Crystal structure of the anti-CD4 adnectin 6940_B01 as a complex with the extracellular domains of CD4 and ibalizumab fAb 2021-11-30 2022-01-12 Wensel, D.,Williams, S.,Dixon, D.P.,Ward, P.,McCormick, P.,Concha, N.,Stewart, E.,Hong, X.,Mazzucco, C.,Pal, S.,Ding, B.,Fellinger, C.,Krystal, M. Novel Bent Conformation of CD4 Induced by HIV-1 Inhibitor Indirectly Prevents Productive Viral Attachment. J.Mol.Biol. 2021 434 167395 167395 7KSZ 33824325 DNA Polymerase Mu, dGTP:At Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (960min) 2020-11-24 2022-01-19 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KT0 33824325 DNA Polymerase Mu, dGTP:At Ground State Ternary Complex, 50 mM Mg2+ (60min) 2020-11-24 2022-01-19 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KT1 33824325 DNA Polymerase Mu, dGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (180min) 2020-11-24 2022-01-19 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KT2 33824325 DNA Polymerase Mu, dGTP:At Product State Ternary Complex, 50 mM Mn2+ (225min) 2020-11-24 2022-01-19 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7L8N Diadenylate cyclase with AMP from Streptococcus mutans 2020-12-31 2022-01-19 Hua, Z.,Hui, W. Diadenylate cyclase with AMP from Streptococcus mutans To Be Published 0 0 0 0 7SCD Ternary complex of fixed-arm Trx-3ost5 (I299E) with 8mer-1 octasaccharide substrate and co-factor product PAP 2021-09-27 2022-01-19 Wander, R.,Kaminski, A.M.,Wang, Z.,Stancanelli, E.,Xu, Y.,Pagadala, V.,Li, J.,Krahn, J.M.,Pham, T.Q.,Liu, J.,Pedersen, L.C. Structural and Substrate Specificity Analysis of 3-O-Sulfotransferase Isoform 5 to Synthesize Heparan Sulfate Acs Catalysis 2021 11 14956 14966 7SCE Ternary complex of fixed-arm Trx-3ost5 (I299E) with 8mer-2 octasaccharide substrate and co-factor product PAP 2021-09-27 2022-01-19 Wander, R.,Kaminski, A.M.,Wang, Z.,Stancanelli, E.,Xu, Y.,Pagadala, V.,Li, J.,Krahn, J.M.,Pham, T.Q.,Liu, J.,Pedersen, L.C. 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Sci Transl Med 2022 14 0 0 7S5C 35150605 M. xanthus ferritin-like protein EncB 2021-09-10 2022-02-02 Eren, E.,Wang, B.,Winkler, D.C.,Watts, N.R.,Steven, A.C.,Wingfield, P.T. Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism. Structure 2022 30 551 0 7S5K 35150605 M. xanthus ferritin-like protein EncB 2021-09-10 2022-02-02 Eren, E.,Wang, B.,Winkler, D.C.,Watts, N.R.,Steven, A.C.,Wingfield, P.T. Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism. Structure 2022 30 551 0 7S8T 35150605 M. xanthus ferritin-like protein EncC 2021-09-19 2022-02-02 Eren, E.,Wang, B.,Winkler, D.C.,Watts, N.R.,Steven, A.C.,Wingfield, P.T. Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism. Structure 2022 30 551 0 7MU8 35219398 Structure of the minimally glycosylated human CEACAM1 N-terminal domain 2021-05-14 2022-02-09 Belcher Dufrisne, M.,Swope, N.,Kieber, M.,Yang, J.Y.,Han, J.,Li, J.,Moremen, K.W.,Prestegard, J.H.,Columbus, L. Human CEACAM1 N-domain dimerization is independent from glycan modifications. Structure 2022 30 658 0 7LP8 The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000983476 2021-02-11 2022-02-16 Cuypers, M.G.,Slavish, P.J.,Rankovic, Z.,White, S.W. The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000983476 To Be Published 0 0 0 0 7M2E Crystal structure of BPTF bromodomain in complex with CB02-092 2021-03-16 2022-02-16 Zahid, H.,Buchholz, C.R.,Singh, M.,Ciccone, M.F.,Chan, A.,Nithianantham, S.,Shi, K.,Aihara, H.,Fischer, M.,Schonbrunn, E.,dos Santos, C.O.,Landry, J.W.,Pomerantz, W.C.K. New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition J.Med.Chem. 2021 64 13902 13917 7TOW 35447081 Antibody DH1058 Fab fragment bound to SARS-CoV-2 fusion peptide 2022-01-24 2022-02-16 Gobeil, S.M.,Henderson, R.,Stalls, V.,Janowska, K.,Huang, X.,May, A.,Speakman, M.,Beaudoin, E.,Manne, K.,Li, D.,Parks, R.,Barr, M.,Deyton, M.,Martin, M.,Mansouri, K.,Edwards, R.J.,Eaton, A.,Montefiori, D.C.,Sempowski, G.D.,Saunders, K.O.,Wiehe, K.,Williams, W.,Korber, B.,Haynes, B.F.,Acharya, P. Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell 2022 82 2050 0 7LSC Crystal structure of near-infrared fluorescent protein miRFP670nano3 2021-02-18 2022-02-23 Pletnev, S. Near-infrared fluorescent protein with enhanced brightness. To Be Published 0 0 0 0 7BHG Gene-engineered variant of FusionRed with Trp based chromophore - 2.1A 2021-01-11 2022-03-02 Pletnev, V.Z.,Pletnev, S.V.,Pletneva, N.V. Gene-engineered variant of FusionRed with Trp based chromophore - 2.1A To Be Published 0 0 0 0 7JYD Human Liver Receptor Homolog-1 in Complex with 10CA and a Fragment of Tif2 2020-08-30 2022-03-02 D'Agostino, E.H.,Mays, S.G.,Flynn, A.F.,Huang, X.,Wang, G.,Liu, X.,Millings, E.J.,Okafor, C.D.,Patel, A.,Cato, M.L.,Cornelison, J.C.,Houtman, R.,Moore, D.D.,Calvert, J.W.,Jui, N.T.,Ortlund, E.A. Tapping into a phospholipid-LRH-1 axis yields a powerful anti-inflammatory agent with in vivo activity against colitis To Be Published 0 0 0 0 7JYE Human Liver Receptor Homolog-1 in Complex with 9ChoP and a Fragment of Tif2 2020-08-30 2022-03-02 D'Agostino, E.H.,Mays, S.G.,Flynn, A.F.,Huang, X.,Wang, G.,Liu, X.,Millings, E.J.,Okafor, C.D.,Patel, A.,Cato, M.L.,Cornelison, J.C.,Houtman, R.,Moore, D.D.,Calvert, J.W.,Jui, N.T.,Ortlund, E.A. Tapping into a phospholipid-LRH-1 axis yields a powerful anti-inflammatory agent with in vivo activity against colitis To Be Published 0 0 0 0 7LVY Crystal Structure of Tetur04g02350 2021-02-26 2022-03-02 Danehsian, L.,Kluza, A.,Dermauw, W.,Wybouw, N.,Van Leeuwen, T.,Chruszcz, M. Crystal Structure of Tetur04g02350 To Be Published 0 0 0 0 7M0N 36603507 The crystal structure of wild type PA endonuclease (A/Vietnam/1203/2004) in complex with Raltegravir 2021-03-11 2022-03-02 Slavish, P.J.,Cuypers, M.G.,Rimmer, M.A.,Abdolvahabi, A.,Jeevan, T.,Kumar, G.,Jarusiewicz, J.A.,Vaithiyalingam, S.,Jones, J.C.,Bowling, J.J.,Price, J.E.,DuBois, R.M.,Min, J.,Webby, R.J.,Rankovic, Z.,White, S.W. Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. 2023 247 115035 115035 7MOF 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 6-diphosphoinositol 1,2,3,4,5-pentakisphosphate 6-InsP7 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOG 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-PCF2 Am-InsP5, an analogue of 5-InsP7 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOH 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5PP-InsP4) and phosphate in conformation B (Pi(B)) 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOI 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with Phenyl Phosphate 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOJ 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with a metaphosphate intermediate 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOK 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) in Complex with Phosphate in Conformation A (Pi(A)) 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOL 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) in complex with phosphate in conformation B (Pi(B)) 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7MOM 35468885 Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) in complex with a metaphosphate intermediate 2021-05-01 2022-03-02 Wang, H.,Perera, L.,Jork, N.,Zong, G.,Riley, A.M.,Potter, B.V.L.,Jessen, H.J.,Shears, S.B. A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. Nat Commun 2022 13 2231 2231 7RM7 The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.025 Angstrom resolution 2021-07-26 2022-03-02 Cuypers, M.G.,Subramanian, C.,Rock, C.O.,White, S.W. The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.025 Angstrom resolution To Be Published 0 0 0 0 7RZK Co-soak crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.9 Angstrom resolution - SAD data 2021-08-27 2022-03-02 Cuypers, M.G.,Subramanian, C.,Rock, C.O.,White, S.W. Co-soak crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.9 Angstrom resolution - SAD data To Be Published 0 0 0 0 7SKR 35199517 BtSCoV-Rf1.2004 Papain-Like protease bound to the non-covalent inhibitor 37 2021-10-21 2022-03-02 Freitas, B.T.,Ahiadorme, D.A.,Bagul, R.S.,Durie, I.A.,Ghosh, S.,Hill, J.,Kramer, N.E.,Murray, J.,O'Boyle, B.M.,Onobun, E.,Pirrone, M.G.,Shepard, J.D.,Enos, S.,Subedi, Y.P.,Upadhyaya, K.,Tripp, R.A.,Cummings, B.S.,Crich, D.,Pegan, S.D. Exploring Noncovalent Protease Inhibitors for the Treatment of Severe Acute Respiratory Syndrome and Severe Acute Respiratory Syndrome-Like Coronaviruses. Acs Infect Dis. 2022 8 596 611 7SNB The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and ADP to 1.105 Angstrom resolution 2021-10-27 2022-03-02 Cuypers, M.G.,Subramanian, C.,Rock, C.O.,White, S.W. The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and ADP to 1.105 Angstrom resolution To Be Published 0 0 0 0 7T2Y 35128921 X-ray structure of a designed cold unfolding four helix bundle 2021-12-06 2022-03-02 Pulavarti, S.V.S.R.K.,Maguire, J.B.,Yuen, S.,Harrison, J.S.,Griffin, J.,Premkumar, L.,Esposito, E.A.,Makhatadze, G.I.,Garcia, A.E.,Weiss, T.M.,Snell, E.H.,Kuhlman, B.,Szyperski, T. From Protein Design to the Energy Landscape of a Cold Unfolding Protein. J.Phys.Chem.B 2022 126 1212 1231 7TO5 35170223 HIV-1 wild type protease with GRL-05816A, with C-4 substituted cyclohexane-fused bis-tetrahydrofuran (Chf-THF) derivatives as P2-ligand [diastereomer 1] 2022-01-23 2022-03-02 Ghosh, A.K.,Kovela, S.,Sharma, A.,Shahabi, D.,Ghosh, A.K.,Hopkins, D.R.,Yadav, M.,Johnson, M.E.,Agniswamy, J.,Wang, Y.F.,Hattori, S.I.,Higashi-Kuwata, N.,Aoki, M.,Amano, M.,Weber, I.T.,Mitsuya, H. Design, Synthesis and X-Ray Structural Studies of Potent HIV-1 Protease Inhibitors Containing C-4 Substituted Tricyclic Hexahydro-Furofuran Derivatives as P2 Ligands. Chemmedchem 2022 17 0 0 7LZ5 Crystal structure of oncogenic KRAS Q61E GMPPCP-bound 2021-03-09 2022-03-16 Huynh, M. Crystal structure of oncogenic KRAS Q61E GMPPCP-bound To Be Published 0 0 0 0 7LZK DHP B in complex with 2,4-Dichlorophenol substrate 2021-03-10 2022-03-16 Carey, L.M.,Ghiladi, R.A. Mechanistic and Structural Studies of 2,4-dihalophenol: Bridging the Functional Gap between Reactivity and Inhibition in Dehaloperoxidase To Be Published 0 0 0 0 7M07 35778389 Pre-catalytic ternary complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7M08 Post-catalytic nicked complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Comprehensive structural survey of DNA double-strand break synapsis by DNA Polymerase Lambda Not Published 0 0 0 0 7M09 35778389 Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7M0A 35778389 Incomplete in crystallo incorporation by DNA Polymerase Lambda bound to blunt-ended DSB substrate and incoming dTTP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7M0B 35778389 Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound mismatched DSB and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7M0C Post-catalytic nicked complex of DNA Polymerase Lambda with bound mismatched DSB substrate 2021-03-10 2022-03-16 Kaminski, A.M.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Comprehensive structural survey of DNA double-strand break synapsis by DNA Polymerase Lambda Not Published 0 0 0 0 7M0D 35778389 Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound complementary DSB substrate and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7M0E 35778389 Pre-catalytic synaptic complex of DNA Polymerase Lambda with gapped DSB substrate and incoming dUMPNPP 2021-03-10 2022-03-16 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun 2022 13 3806 3806 7KQM 34969861 Binary complex of TERT (telomerase reverse transcriptase) with RNA/telomeric DNA hybrid 2020-11-17 2022-03-23 Choi, W.S.,Weng, P.J.,Yang, W. Flexibility of telomerase in binding the RNA template and DNA telomeric repeat. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7RCX 35902581 Crystal structure of C. difficile penicillin-binding protein 2 in apo form 2021-07-08 2022-03-23 Sacco, M.D.,Wang, S.,Adapa, S.R.,Zhang, X.,Lewandowski, E.M.,Gongora, M.V.,Keramisanou, D.,Atlas, Z.D.,Townsend, J.A.,Gatdula, J.R.,Morgan, R.T.,Hammond, L.R.,Marty, M.T.,Wang, J.,Eswara, P.J.,Gelis, I.,Jiang, R.H.Y.,Sun, X.,Chen, Y. A unique class of Zn 2+ -binding serine-based PBPs underlies cephalosporin resistance and sporogenesis in Clostridioides difficile. Nat Commun 2022 13 4370 4370 7RCY 35902581 Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole 2021-07-08 2022-03-23 Sacco, M.D.,Wang, S.,Adapa, S.R.,Zhang, X.,Lewandowski, E.M.,Gongora, M.V.,Keramisanou, D.,Atlas, Z.D.,Townsend, J.A.,Gatdula, J.R.,Morgan, R.T.,Hammond, L.R.,Marty, M.T.,Wang, J.,Eswara, P.J.,Gelis, I.,Jiang, R.H.Y.,Sun, X.,Chen, Y. A unique class of Zn 2+ -binding serine-based PBPs underlies cephalosporin resistance and sporogenesis in Clostridioides difficile. Nat Commun 2022 13 4370 4370 7R73 35413243 Crystal structure of llama VHH antibody D7 in complex with HIV-1 gp120 core 2021-06-24 2022-03-30 Zhou, T.,Chen, L.,Gorman, J.,Wang, S.,Kwon, Y.D.,Lin, B.C.,Louder, M.K.,Rawi, R.,Stancofski, E.D.,Yang, Y.,Zhang, B.,Quigley, A.F.,McCoy, L.E.,Rutten, L.,Verrips, T.,Weiss, R.A.,Doria-Rose, N.A.,Shapiro, L.,Kwong, P.D. Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site. Structure 2022 30 862 0 7R74 35413243 Crystal structure of llama VHH antibody in complex with HIV-1 HXBC2 gp120 core 2021-06-24 2022-03-30 Zhou, T.,Chen, L.,Gorman, J.,Wang, S.,Kwon, Y.D.,Lin, B.C.,Louder, M.K.,Rawi, R.,Stancofski, E.D.,Yang, Y.,Zhang, B.,Quigley, A.F.,McCoy, L.E.,Rutten, L.,Verrips, T.,Weiss, R.A.,Doria-Rose, N.A.,Shapiro, L.,Kwong, P.D. Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site. Structure 2022 30 862 0 7SFC 35395178 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3735967A 2021-10-03 2022-03-30 Horton, J.R.,Pathuri, S.,Wong, K.,Ren, R.,Rueda, L.,Fosbenner, D.T.,Heerding, D.A.,McCabe, M.T.,Pappalardi, M.B.,Zhang, X.,King, B.W.,Cheng, X. Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors. Structure 2022 30 793 0 7SFD 35395178 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3543105A 2021-10-03 2022-03-30 Horton, J.R.,Pathuri, S.,Wong, K.,Ren, R.,Rueda, L.,Fosbenner, D.T.,Heerding, D.A.,McCabe, M.T.,Pappalardi, M.B.,Zhang, X.,King, B.W.,Cheng, X. Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors. Structure 2022 30 793 0 7SFE 35395178 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3830334A 2021-10-03 2022-03-30 Horton, J.R.,Pathuri, S.,Wong, K.,Ren, R.,Rueda, L.,Fosbenner, D.T.,Heerding, D.A.,McCabe, M.T.,Pappalardi, M.B.,Zhang, X.,King, B.W.,Cheng, X. Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors. Structure 2022 30 793 0 7SFF 35395178 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3852279B 2021-10-03 2022-03-30 Horton, J.R.,Pathuri, S.,Wong, K.,Ren, R.,Rueda, L.,Fosbenner, D.T.,Heerding, D.A.,McCabe, M.T.,Pappalardi, M.B.,Zhang, X.,King, B.W.,Cheng, X. Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors. Structure 2022 30 793 0 7SFG 35395178 Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Cofactor SAM 2021-10-03 2022-03-30 Horton, J.R.,Pathuri, S.,Wong, K.,Ren, R.,Rueda, L.,Fosbenner, D.T.,Heerding, D.A.,McCabe, M.T.,Pappalardi, M.B.,Zhang, X.,King, B.W.,Cheng, X. Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors. Structure 2022 30 793 0 7TQA 35347133 Crystal Structure of monoclonal S9.6 Fab 2022-01-26 2022-03-30 Bou-Nader, C.,Bothra, A.,Garboczi, D.N.,Leppla, S.H.,Zhang, J. Structural basis of R-loop recognition by the S9.6 monoclonal antibody. Nat Commun 2022 13 1641 1641 7TQB 35347133 Crystal structure of monoclonal S9.6 Fab bound to DNA-RNA hybrid 2022-01-26 2022-03-30 Bou-Nader, C.,Bothra, A.,Garboczi, D.N.,Leppla, S.H.,Zhang, J. Structural basis of R-loop recognition by the S9.6 monoclonal antibody. Nat Commun 2022 13 1641 1641 7M9F 34063519 Structure of the wild-type native full-length HIV-1 capsid protein in complex with ZW-1261 2021-03-31 2022-04-06 Sun, Q.,Levy, R.M.,Kirby, K.A.,Wang, Z.,Sarafianos, S.G.,Deng, N. Molecular Dynamics Free Energy Simulations Reveal the Mechanism for the Antiviral Resistance of the M66I HIV-1 Capsid Mutation. Viruses 2021 13 0 0 7RZZ 34908132 Crystal structure of FBF-2 in complex with LST-1 site A peptide and compact FBE RNA 2021-08-28 2022-04-13 Qiu, C.,Wine, R.N.,Campbell, Z.T.,Hall, T.M.T. Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal. Nucleic Acids Res. 2022 50 536 548 7SHH 35300081 Bacterial cereblon homologue in complex with (R)-3-(4-methoxyphenyl)piperidine-2,6-dione 2021-10-08 2022-04-13 Alcock, L.J.,Chang, Y.,Jarusiewicz, J.A.,Actis, M.,Nithianantham, S.,Mayasundari, A.,Min, J.,Maxwell, D.,Hunt, J.,Smart, B.,Yang, J.J.,Nishiguchi, G.,Fischer, M.,Mullighan, C.G.,Rankovic, Z. Development of Potent and Selective Janus Kinase 2/3 Directing PG-PROTACs. Acs Med.Chem.Lett. 2022 13 475 482 7SOG 35400667 Thermostable actophorin 2021-10-30 2022-04-20 Quirk, S.,Lieberman, R.L. Structure and activity of a thermally stable mutant of Acanthamoeba actophorin. Acta Crystallogr.,Sect.F 2022 78 150 160 7MCO Crystal Structure of Tetur04g02350 2021-04-02 2022-04-27 Danehsian, L.,Kluza, A.,Dermauw, W.,Wybouw, N.,Van Leeuwen, T.,Chruszcz, M. Crystal Structure of Tetur04g02350 To Be Published 0 0 0 0 7PXY 35422967 Crystal structure of Arabidopsis thaliana 5-enol-pyruvyl-shikimate-3-phosphate synthase (EPSPS) in open conformation 2021-10-08 2022-04-27 Ruszkowski, M.,Forlani, G. Deciphering the structure of Arabidopsis thaliana 5- enol -pyruvyl-shikimate-3-phosphate synthase: An essential step toward the discovery of novel inhibitors to supersede glyphosate. Comput Struct Biotechnol J 2022 20 1494 1505 7RPR 35693799 Borrelia miyamotoi FbpA complement inhibitory domain 2021-08-04 2022-04-27 Booth Jr., C.E.,Powell-Pierce, A.D.,Skare, J.T.,Garcia, B.L. Borrelia miyamotoi FbpA and FbpB Are Immunomodulatory Outer Surface Lipoproteins With Distinct Structures and Functions. Front Immunol 2022 13 886733 886733 7RPS 35693799 B. miyamotoi FbpB complement inhibitory domain 2021-08-04 2022-04-27 Booth Jr., C.E.,Powell-Pierce, A.D.,Skare, J.T.,Garcia, B.L. Borrelia miyamotoi FbpA and FbpB Are Immunomodulatory Outer Surface Lipoproteins With Distinct Structures and Functions. Front Immunol 2022 13 886733 886733 7MLH 35799831 Crystal structure of human IgE (2F10) in complex with Der p 2.0103 2021-04-28 2022-05-04 Khatri, K.,Richardson, C.M.,Glesner, J.,Kapingidza, A.B.,Mueller, G.A.,Zhang, J.,Dolamore, C.,Vailes, L.D.,Wunschmann, S.,Peebles Jr., R.S.,Chapman, M.D.,Smith, S.A.,Chruszcz, M.,Pomes, A. Human IgE monoclonal antibody recognition of mite allergen Der p 2 defines structural basis of an epitope for IgE cross-linking and anaphylaxis in vivo. Pnas Nexus 2022 1 0 0 7KTC 33824325 DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (120min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTD 33824325 DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTH 33824325 DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (2160min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTI 33824325 DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 20 uM Mn2+ (120min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTJ 33824325 DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTK 33824325 DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Ground State Ternary Complex, 50 mM Mg2+ (90min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTL 33824325 DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (90min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7KTM 33824325 DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (30min) 2020-11-24 2022-05-11 Jamsen, J.A.,Sassa, A.,Shock, D.D.,Beard, W.A.,Wilson, S.H. Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide. Nat Commun 2021 12 2059 2059 7MR8 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-076 2021-05-07 2022-05-11 Chan, A.,Karim, R.,Schonbrunn, E. Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-076 To Be Published 0 0 0 0 7TT8 35503419 Human LRH-1 LBD bound to agonist 6N-10CA and fragment of Tif2 coactivator 2022-01-31 2022-05-11 Cato, M.L.,Cornelison, J.L.,Spurlin, R.M.,Courouble, V.V.,Patel, A.B.,Flynn, A.R.,Johnson, A.M.,Okafor, C.D.,Frank, F.,D'Agostino, E.H.,Griffin, P.R.,Jui, N.T.,Ortlund, E.A. Differential Modulation of Nuclear Receptor LRH-1 through Targeting Buried and Surface Regions of the Binding Pocket. J.Med.Chem. 2022 65 6888 6902 7TZE 35761082 Structure of murine LAG3 domains 1-2 2022-02-15 2022-05-11 Ming, Q.,Celias, D.P.,Wu, C.,Cole, A.R.,Singh, S.,Mason, C.,Dong, S.,Tran, T.H.,Amarasinghe, G.K.,Ruffell, B.,Luca, V.C. LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition. Nat.Immunol. 2022 23 1031 1041 7UUT 35357038 Ternary complex crystal structure of secondary alcohol dehydrogenases from the Thermoanaerobacter ethanolicus mutants C295A and I86A provides better understanding of catalytic mechanism 2022-04-28 2022-05-11 Dinh, T.,Rahn, K.T.,Phillips, R.S. Crystallographic snapshots of ternary complexes of thermophilic secondary alcohol dehydrogenase from Thermoanaerobacter pseudoethanolicus reveal the dynamics of ligand exchange and the proton relay network. Proteins 2022 90 1570 1583 7MR5 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-052 2021-05-07 2022-05-18 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MR6 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-082 2021-05-07 2022-05-18 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MRC 35867655 Crystal structure of the first bromodomain (BD1) of human BRDT bound to GXH-II-052 2021-05-07 2022-05-18 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. 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AncAR1-Rev - progesterone - Tif2 To Be Published 0 0 0 0 7MR9 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to NC-II-153 2021-05-07 2022-08-03 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MRA 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to NC-II-259 2021-05-07 2022-08-03 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MRB 35867655 Crystal structure of the first bromodomain (BD1) of human BRD4 bound to NC-III-53 2021-05-07 2022-08-03 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MRG 35867655 Crystal structure of the first bromodomain (BD1) of human BRDT bound to NC-II-153 2021-05-07 2022-08-03 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7MRH 35867655 Crystal structure of the first bromodomain (BD1) of human BRDT bound to NC-II-259 2021-05-07 2022-08-03 Guan, X.,Cheryala, N.,Karim, R.M.,Chan, A.,Berndt, N.,Qi, J.,Georg, G.I.,Schonbrunn, E. Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. 2022 65 10441 10458 7RL3 37163316 Structure of Drosophila melanogaster Plk4 PB3 2021-07-23 2022-08-03 Ryniawec, J.M.,Buster, D.W.,Slevin, L.K.,Boese, C.J.,Amoiroglou, A.,Dean, S.M.,Slep, K.C.,Rogers, G.C. Polo-like kinase 4 homodimerization and condensate formation regulate its own protein levels but are not required for centriole assembly. Mol.Biol.Cell 2023 34 0 0 7RMD 36898329 Crystal structure of the first bromodomain of human BRD4 in complex with SJ001011461-1 2021-07-27 2022-08-03 Koravovic, M.,Mayasundari, A.,Tasic, G.,Keramatnia, F.,Stachowski, T.R.,Cui, H.,Chai, S.C.,Jonchere, B.,Yang, L.,Li, Y.,Fu, X.,Hiltenbrand, R.,Paul, L.,Mishra, V.,Klco, J.M.,Roussel, M.F.,Pomerantz, W.C.,Fischer, M.,Rankovic, Z.,Savic, V. From PROTAC to inhibitor: Structure-guided discovery of potent and orally bioavailable BET inhibitors. Eur.J.Med.Chem. 2023 251 115246 115246 7RN2 36898329 Crystal structure of the first bromodomain of human BRD4 in complex with SJ001010551-2 2021-07-28 2022-08-03 Koravovic, M.,Mayasundari, A.,Tasic, G.,Keramatnia, F.,Stachowski, T.R.,Cui, H.,Chai, S.C.,Jonchere, B.,Yang, L.,Li, Y.,Fu, X.,Hiltenbrand, R.,Paul, L.,Mishra, V.,Klco, J.M.,Roussel, M.F.,Pomerantz, W.C.,Fischer, M.,Rankovic, Z.,Savic, V. From PROTAC to inhibitor: Structure-guided discovery of potent and orally bioavailable BET inhibitors. Eur.J.Med.Chem. 2023 251 115246 115246 7S8Y 35648650 Cryogenic apo Human Hsp90a-NTD 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S8Z 35648650 Room-temperature apo Human Hsp90a-NTD 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S90 35648650 Cryogenic Human Hsp90a-NTD bound to adenine 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S95 35648650 Room-temperature Human Hsp90a-NTD bound to adenine 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S98 35648650 Cryogenic Human Hsp90a-NTD bound to N6M 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S99 35648650 Room-temperature Human Hsp90a-NTD bound to N6M 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S9F 35648650 Cryogenic Human Hsp90a-NTD bound to BIIB021 2021-09-20 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S9G 35648650 Room-temperature Human Hsp90a-NTD bound to BIIB021 2021-09-21 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7S9I 35648650 Room-temperature Human Hsp90a-NTD bound to EC144 2021-09-21 2022-08-03 Stachowski, T.R.,Vanarotti, M.,Seetharaman, J.,Lopez, K.,Fischer, M. Water Networks Repopulate Protein-Ligand Interfaces with Temperature. Angew.Chem.Int.Ed.Engl. 2022 61 0 0 7TCQ 35841885 Crystal structure of SARS-CoV-2 neutralizing antibody WS6 in complex with spike S2 peptide 2021-12-28 2022-08-03 Shi, W.,Wang, L.,Zhou, T.,Sastry, M.,Yang, E.S.,Zhang, Y.,Chen, M.,Chen, X.,Choe, M.,Creanga, A.,Leung, K.,Olia, A.S.,Pegu, A.,Rawi, R.,Schon, A.,Shen, C.H.,Stancofski, E.D.,Talana, C.A.,Teng, I.T.,Wang, S.,Corbett, K.S.,Tsybovsky, Y.,Mascola, J.R.,Kwong, P.D. Vaccine-elicited murine antibody WS6 neutralizes diverse beta-coronaviruses by recognizing a helical stem supersite of vulnerability. Structure 2022 30 1233 0 7UKN 35938868 Crystal Structure of DDB1 in Complex with the H-Box Motif of pUL145 2022-04-01 2022-08-10 Wick, E.T.,Treadway, C.J.,Li, Z.,Nicely, N.I.,Ren, Z.,Baldwin, A.S.,Xiong, Y.,Harrison, J.S.,Brown, N.G. Insight into Viral Hijacking of CRL4 Ubiquitin Ligase through Structural Analysis of the pUL145-DDB1 Complex. J.Virol. 2022 96 0 0 7M1I 35969974 Crystal structure of dehaloperoxidase B in complex with 2,6-dichlorophenol 2021-03-13 2022-08-17 Malewschik, T.,Carey, L.M.,de Serrano, V.,Ghiladi, R.A. Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols. J.Inorg.Biochem. 2022 236 111944 111944 7LIU DDX3X bound to ATP analog and remodeled RNA:DNA hybrid 2021-01-27 2022-08-24 Enemark, E.J.,Yu, S. DDX3X bound to ATP analog and remodeled RNA:DNA hybrid To Be Published 0 0 0 0 7Q00 35947902 Crystal structure of serine hydroxymethyltransferase, isoform 4 from Arabidopsis thaliana (SHM4) 2021-10-13 2022-08-24 Nogues, I.,Sekula, B.,Angelaccio, S.,Grzechowiak, M.,Tramonti, A.,Contestabile, R.,Ruszkowski, M. Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives. Plant Physiol Biochem. 2022 187 37 49 7QX8 35947902 Crystal structure of serine hydroxymethyltransferase, isoform 7 from Arabidopsis thaliana (SHM7) 2022-01-26 2022-08-24 Nogues, I.,Sekula, B.,Angelaccio, S.,Grzechowiak, M.,Tramonti, A.,Contestabile, R.,Ruszkowski, M. Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives. Plant Physiol Biochem. 2022 187 37 49 7M0F DHP B in complex with 4-bromophenol ligand 2021-03-10 2022-08-31 Carey, L.M.,Ghiladi, R.A. Mechanistic and Structural Studies of 2,4-dihalophenol: Bridging the Functional Gap between Reactivity and Inhibition in Dehaloperoxidase To Be Published 0 0 0 0 7M1J 35969974 Crystal structure of dehaloperoxidase B in complex with 2,6-dibromophenol 2021-03-13 2022-08-31 Malewschik, T.,Carey, L.M.,de Serrano, V.,Ghiladi, R.A. Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols. J.Inorg.Biochem. 2022 236 111944 111944 7M1K 35969974 Crystal structure of dehaloperoxidase B in complex with 2,6-difluorophenol 2021-03-13 2022-08-31 Malewschik, T.,Carey, L.M.,de Serrano, V.,Ghiladi, R.A. Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols. J.Inorg.Biochem. 2022 236 111944 111944 7T3F 35318165 Development of BRD4 inhibitors as arsenicals antidotes 2021-12-07 2022-08-31 Yatchang, M.F.,Mathew, B.,Srivastava, R.K.,Khan, J.,Muzaffar, S.,Zhang, S.,Wu, M.,Zhai, L.,Ruiz, P.,Agarwal, A.,Bostwick, J.R.,Suto, M.J.,Athar, M.,Augelli-Szafran, C.E. Development of BRD4 inhibitors as anti-inflammatory agents and antidotes for arsenicals. Bioorg.Med.Chem.Lett. 2022 64 128696 128696 7TUC 36115831 Crystal structure of HLA-B*44:05 (T73C) with 9mer EEFGRAFSF 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7TUD 36115831 Crystal structure of HLA-B*44:05 (T73C) with 6mer EEFGRC and dipeptide GL 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7TUE 36115831 Crystal structure of Tapasin in complex with HLA-B*44:05 (T73C) 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7TUF 36115831 Crystal structure of Tapasin in complex with PaSta1-Fab 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7TUG 36115831 Crystal structure of Tapasin in complex with PaSta2-Fab 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7TUH 36115831 Crystal structure of anti-tapasin PaSta2-Fab 2022-02-02 2022-09-07 Jiang, J.,Taylor, D.K.,Kim, E.J.,Boyd, L.F.,Ahmad, J.,Mage, M.G.,Truong, H.V.,Woodward, C.H.,Sgourakis, N.G.,Cresswell, P.,Margulies, D.H.,Natarajan, K. Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation. Nat Commun 2022 13 5470 5470 7UOA 35522528 MAGEA4-MTP1 linear peptide complex 2022-04-12 2022-09-07 Fleming, M.C.,Chiou, L.F.,Tumbale, P.P.,Droby, G.N.,Lim, J.,Norris-Drouin, J.L.,Williams, J.G.,Pearce, K.H.,Williams, R.S.,Vaziri, C.,Bowers, A.A. Discovery and Structural Basis of the Selectivity of Potent Cyclic Peptide Inhibitors of MAGE-A4. J.Med.Chem. 2022 65 7231 7245 8D1R 36037791 Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT520 2022-05-27 2022-09-14 Pang, A.H.,Green, K.D.,Chandrika, N.T.,Garzan, A.,Punetha, A.,Holbrook, S.Y.L.,Willby, M.J.,Posey, J.E.,Tsodikov, O.V.,Garneau-Tsodikova, S. Discovery of substituted benzyloxy-benzylamine inhibitors of acetyltransferase Eis and their anti-mycobacterial activity. Eur.J.Med.Chem. 2022 242 114698 114698 8D23 36037791 Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT529 2022-05-27 2022-09-14 Pang, A.H.,Green, K.D.,Chandrika, N.T.,Garzan, A.,Punetha, A.,Holbrook, S.Y.L.,Willby, M.J.,Posey, J.E.,Tsodikov, O.V.,Garneau-Tsodikova, S. Discovery of substituted benzyloxy-benzylamine inhibitors of acetyltransferase Eis and their anti-mycobacterial activity. Eur.J.Med.Chem. 2022 242 114698 114698 8D25 36037791 Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT530 2022-05-27 2022-09-14 Pang, A.H.,Green, K.D.,Chandrika, N.T.,Garzan, A.,Punetha, A.,Holbrook, S.Y.L.,Willby, M.J.,Posey, J.E.,Tsodikov, O.V.,Garneau-Tsodikova, S. Discovery of substituted benzyloxy-benzylamine inhibitors of acetyltransferase Eis and their anti-mycobacterial activity. Eur.J.Med.Chem. 2022 242 114698 114698 8DPJ 36603507 The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023030 2022-07-15 2022-09-14 Slavish, P.J.,Cuypers, M.G.,Rimmer, M.A.,Abdolvahabi, A.,Jeevan, T.,Kumar, G.,Jarusiewicz, J.A.,Vaithiyalingam, S.,Jones, J.C.,Bowling, J.J.,Price, J.E.,DuBois, R.M.,Min, J.,Webby, R.J.,Rankovic, Z.,White, S.W. Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. 2023 247 115035 115035 8DQS The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023032 2022-07-19 2022-09-14 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023032 To Be Published 0 0 0 0 8E1Q The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044 2022-08-11 2022-09-14 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044 To Be Published 0 0 0 0 8E21 The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034 2022-08-12 2022-09-14 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034 To Be Published 0 0 0 0 7UT3 36054098 Crystal structure of complex of Fab, G10C with GalNAc-pNP 2022-04-26 2022-09-21 Xia, L.,Bellomo, T.R.,Gibadullin, R.,Congdon, M.D.,Edmondson, E.F.,Li, M.,Wlodawer, A.,Li, C.,Temme, J.S.,Patel, P.,Butcher, D.,Gildersleeve, J.C. Development of a GalNAc-Tyrosine-Specific Monoclonal Antibody and Detection of Tyrosine O -GalNAcylation in Numerous Human Tissues and Cell Lines. J.Am.Chem.Soc. 2022 144 16410 16422 8DKY 36064941 Crystal structure of the Aquifex aeolicus Wzt Carbohydrate Binding Domain bound to 3-O-methyl-D-mannose 2022-07-06 2022-09-21 Spellmon, N.,Muszynski, A.,Gorniak, I.,Vlach, J.,Hahn, D.,Azadi, P.,Zimmer, J. Molecular basis for polysaccharide recognition and modulated ATP hydrolysis by the O antigen ABC transporter. Nat Commun 2022 13 5226 5226 8DTW The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023036 2022-07-26 2022-09-21 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023036 To Be Published 0 0 0 0 8E4S The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034 2022-08-18 2022-09-21 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034 To Be Published 0 0 0 0 7M66 37012403 Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor 2021-03-25 2022-09-28 Bose, S.,Steussy, C.N.,Lopez-Perez, D.,Schmidt, T.,Kulathunga, S.C.,Seleem, M.N.,Lipton, M.,Mesecar, A.D.,Rodwell, V.W.,Stauffacher, C.V. Targeting Enterococcus faecalis HMG-CoA reductase with a non-statin inhibitor. Commun Biol 2023 6 360 360 7N3Y 36198268 Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain E59Q/D222N Mutant in Complex with DNA 2021-06-02 2022-09-28 Williams, J.S.,Wojtaszek, J.L.,Appel, D.C.,Krahn, J.,Wallace, B.D.,Walsh, E.,Kunkel, T.A.,Williams, R.S. Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2. Cell Rep 2022 41 111448 111448 7N3Z 36198268 Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain 2021-06-02 2022-09-28 Williams, J.S.,Wojtaszek, J.L.,Appel, D.C.,Krahn, J.,Wallace, B.D.,Walsh, E.,Kunkel, T.A.,Williams, R.S. Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2. Cell Rep 2022 41 111448 111448 8DVO The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044 2022-07-29 2022-09-28 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044 To Be Published 0 0 0 0 7SA6 fHbp mutant 2416 bound to Fab JAR5 2021-09-22 2022-10-05 Chesterman, C.,Desautels, T.,Sierra, L.-J.,Arrildt, K.,Zemla, A.,Lau, E.Y.,Sundaram, S.,Laliberte, J.,Chen, L.,Ruby, A.,Mednikov, M.,Bertholet, S.,Yu, D.,Luisi, K.,Malito, E.,Mallett, C.,Bottomley, M.J.,Berg, R.,Faissol, D. Active Learning for Rapid Design: An iterative AI approach for accelerated vaccine design that combines active machine learning and high-throughput experimental evaluation To Be Published 0 0 0 0 7SBZ JAR5 Fab bound to fHbp v1.1 crystallized in space group I422 2021-09-26 2022-10-05 Chesterman, C.,Desautels, T.,Sierra, L.J.,Arrildt, K.,Zemla, A.,Lau, E.Y.,Sundaram, S.,Laliberte, J.,Chen, L.,Ruby, A.,Mednikov, M.,Bertholet, S.,Yu, D.,Luisi, K.,Malito, E.,Mallet, C.,Bottomley, M.J.,van den Berg, R.A.,Faissol, D. Active Learning for Rapid Design: An iterative AI approach for accelerated vaccine design that combines active machine learning and high-throughput experimental evaluation To Be Published 0 0 0 0 8DCH 36108568 Crystal Structure of a highly resistant HIV-1 protease Clinical isolate PR10x with GRL-0519 (tris-tetrahydrofuran as P2 ligand) 2022-06-16 2022-10-05 Wong-Sam, A.,Wang, Y.F.,Kneller, D.W.,Kovalevsky, A.Y.,Ghosh, A.K.,Harrison, R.W.,Weber, I.T. HIV-1 protease with 10 lopinavir and darunavir resistance mutations exhibits altered inhibition, structural rearrangements and extreme dynamics. J.Mol.Graph.Model. 2022 117 108315 108315 8DCI 36108568 Crystal Structure of a highly resistant HIV-1 protease Clinical isolate PR10x (inhibitor-free) 2022-06-16 2022-10-05 Wong-Sam, A.,Wang, Y.F.,Kneller, D.W.,Kovalevsky, A.Y.,Ghosh, A.K.,Harrison, R.W.,Weber, I.T. HIV-1 protease with 10 lopinavir and darunavir resistance mutations exhibits altered inhibition, structural rearrangements and extreme dynamics. J.Mol.Graph.Model. 2022 117 108315 108315 8EDZ The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ000986319 2022-09-06 2022-10-05 Cuypers, M.G.,Slavish, J.P.,Rankovic, Z.,White, S.W. The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ000986319 To Be Published 0 0 0 0 8DFG 36202833 Crystal structure of potently neutralizing human monoclonal antibody 42D6 Fab in complex with MSP1-19 2022-06-22 2022-10-12 Patel, P.N.,Dickey, T.H.,Hopp, C.S.,Diouf, A.,Tang, W.K.,Long, C.A.,Miura, K.,Crompton, P.D.,Tolia, N.H. Neutralizing and interfering human antibodies define the structural and mechanistic basis for antigenic diversion. Nat Commun 2022 13 5888 5888 8DFH 36202833 Crystal structure of non-neutralizing / interfering human monoclonal antibody 42C3 Fab in complex with MSP1-19 2022-06-22 2022-10-12 Patel, P.N.,Dickey, T.H.,Hopp, C.S.,Diouf, A.,Tang, W.K.,Long, C.A.,Miura, K.,Crompton, P.D.,Tolia, N.H. Neutralizing and interfering human antibodies define the structural and mechanistic basis for antigenic diversion. 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Effect of Passive Administration of Monoclonal Antibodies Recognizing Simian Immunodeficiency Virus (SIV) V2 in CH59-Like Coil/Helical or beta-Sheet Conformations on Time of SIV mac251 Acquisition. J.Virol. 2023 97 0 0 8HU6 36563792 AMP deaminase 2 in complex with AMP 2022-12-22 2023-01-18 Kitao, Y.,Saito, T.,Watanabe, S.,Ohe, Y.,Takahashi, K.,Akaki, T.,Adachi, T.,Doi, S.,Yamanaka, K.,Murai, Y.,Oba, M.,Suzuki, T. The discovery of 3,3-dimethyl-1,2,3,4-tetrahydroquinoxaline-1-carboxamides as AMPD2 inhibitors with a novel mechanism of action. Bioorg.Med.Chem.Lett. 2023 80 129110 129110 7T9C Crystal structure of dehaloperoxidase B in complex with thymol 2021-12-18 2023-01-25 Malewschik, T.,de Serrano, V.S.,Yun, D.,Ghiladi, R.A. The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes To Be Published 0 0 0 0 7T9D Crystal structure of dehaloperoxidase B in complex with -(-) limonene oxide 2021-12-18 2023-01-25 Malewschik, T.,de Serrano, V.,Yun, D.,Ghiladi, R.A. The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes To Be Published 0 0 0 0 7T9E Crystal structure of dehaloperoxidase B in complex with +(-)-limonene oxide 2021-12-18 2023-01-25 Malewschik, T.,de Serrano, V.S.,Yun, D.,Ghiladi, R.A. The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes To Be Published 0 0 0 0 8DB4 36647835 Crystal structure of the peanut allergen Ara h 2 bound by two neutralizing antibodies 22S1 and 13T1 2022-06-14 2023-01-25 LaHood, N.A.,Min, J.,Keswani, T.,Richardson, C.M.,Amoako, K.,Zhou, J.,Marini-Rapoport, O.,Bernard, H.,Hazebrouck, S.,Shreffler, W.G.,Love, J.C.,Pomes, A.,Pedersen, L.C.,Mueller, G.A.,Patil, S.U. Immunotherapy-induced neutralizing antibodies disrupt allergen binding and sustain allergen tolerance in peanut allergy. J.Clin.Invest. 2023 133 0 0 7UED 36968141 Crystal structure of full length mesothelin bound with MORAb-009 Fab 2022-03-21 2023-02-01 Zhan, J.,Lin, D.,Watson, N.,Esser, L.,Tang, W.K.,Zhang, A.,Liu, X.,Hassan, R.,Gleinich, A.,Shajahan, A.,Azadi, P.,Pastan, I.,Xia, D. Structures of Cancer Antigen Mesothelin and Its Complexes with Therapeutic Antibodies. Cancer Res Commun 2023 3 175 191 8F4T 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with proguanil 2022-11-11 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F4W 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with venlafaxine 2022-11-11 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F4Z 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with chloroquine 2022-11-11 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F51 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with mefloquine 2022-11-11 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F55 36657084 Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis H37Rv in complex with inhibitor SGT1614 2022-11-11 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F57 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with inhibitor SGT1615 2022-11-12 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F58 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with inhibitor SGT1616 2022-11-12 2023-02-01 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8E3D 36626981 ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#11) 2022-08-17 2023-02-08 Ren, R.,Horton, J.R.,Chen, Q.,Yang, J.,Liu, B.,Huang, Y.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia. J.Biol.Chem. 2023 299 102885 102885 8E3E 36626981 ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#10) 2022-08-17 2023-02-08 Ren, R.,Horton, J.R.,Chen, Q.,Yang, J.,Liu, B.,Huang, Y.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia. J.Biol.Chem. 2023 299 102885 102885 8F4A 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with chlorhexidine 2022-11-10 2023-02-08 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 8F4U 36657084 Crystal structure of acetyltransferase Eis from M. tuberculosis in complex with azelastine 2022-11-11 2023-02-08 Pang, A.H.,Green, K.D.,Punetha, A.,Thamban Chandrika, N.,Howard, K.C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry 2023 62 710 721 7U9E 36792576 Pfs230 D1 domain in complex with 230AL-26 2022-03-10 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7U9W 36792576 Pfs230 D1 domain in complex with 230AS-88 2022-03-11 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UA2 36792576 Pfs230 D1 domain in complex with 230AL-18 2022-03-11 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UA8 36792576 Pfs230 D1 domain in complex with 230AL-20 2022-03-11 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UBS 36792576 Pfs230 D1 domain in complex with 230AS-26 2022-03-15 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UC8 36792576 Pfs230 D1 domain in complex with 230AS-73 2022-03-16 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UFW 36792576 Pfs230 D1D2 in complex with LMIV230-01 2022-03-23 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 7UI1 36792576 Pfs230 D1D2 domain in complex with 230AL-37 2022-03-28 2023-02-15 Tang, W.K.,Coelho, C.H.,Miura, K.,Nguemwo Tentokam, B.C.,Salinas, N.D.,Narum, D.L.,Healy, S.A.,Sagara, I.,Long, C.A.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of Pfs230D1 derived from analysis of individuals vaccinated with a malaria transmission-blocking vaccine. Immunity 2023 56 433 0 8DAJ 36222314 Structure and Biochemistry of a Promiscuous Thermophilic Polyhydroxybutyrate Depolymerase from Lihuaxuella thermophilia 2022-06-13 2023-02-15 Thomas, G.M.,Quirk, S.,Huard, D.J.E.,Lieberman, R.L. Bioplastic degradation by a polyhydroxybutyrate depolymerase from a thermophilic soil bacterium. Protein Sci. 2022 31 0 0 8FIU 36719971 Potent long-acting inhibitors targeting HIV-1 capsid based on a versatile quinazolin-4-one scaffold 2022-12-16 2023-02-15 Gillis, E.P.,Parcella, K.,Bowsher, M.,Cook, J.H.,Iwuagwu, C.,Naidu, B.N.,Patel, M.,Peese, K.,Huang, H.,Valera, L.,Wang, C.,Kieltyka, K.,Parker, D.D.,Simmermacher, J.,Arnoult, E.,Nolte, R.T.,Wang, L.,Bender, J.A.,Frennesson, D.B.,Saulnier, M.,Wang, A.X.,Meanwell, N.A.,Belema, M.,Hanumegowda, U.,Jenkins, S.,Krystal, M.,Kadow, J.F.,Cockett, M.,Fridell, R. Potent Long-Acting Inhibitors Targeting the HIV-1 Capsid Based on a Versatile Quinazolin-4-one Scaffold. J.Med.Chem. 2023 66 1941 1954 7UVA 36797403 Crystal structure of KDM2A histone demethylase catalytic domain in complex with an H3C36 peptide modified by UNC8015 2022-04-29 2023-02-22 Spangler, C.J.,Skrajna, A.,Foley, C.A.,Nguyen, A.,Budziszewski, G.R.,Azzam, D.N.,Arteaga, E.C.,Simmons, H.C.,Smith, C.B.,Wesley, N.A.,Wilkerson, E.M.,McPherson, J.E.,Kireev, D.,James, L.I.,Frye, S.V.,Goldfarb, D.,McGinty, R.K. Structural basis of paralog-specific KDM2A/B nucleosome recognition. Nat.Chem.Biol. 2023 19 624 632 8EBL 36805027 Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2 2022-08-31 2023-02-22 Scott, D.C.,King, M.T.,Baek, K.,Gee, C.T.,Kalathur, R.,Li, J.,Purser, N.,Nourse, A.,Chai, S.C.,Vaithiyalingam, S.,Chen, T.,Lee, R.E.,Elledge, S.J.,Kleiger, G.,Schulman, B.A. E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity. Mol.Cell 2023 83 770 0 8EUS 36748341 Crystal structure of NPC1 luminal domain C 2022-10-19 2023-02-22 Odongo, L.,Zadrozny, K.K.,Diehl, W.E.,Luban, J.,White, J.M.,Ganser-Pornillos, B.K.,Tamm, L.K.,Pornillos, O. Purification and structure of luminal domain C of human Niemann-Pick C1 protein. Acta Crystallogr.,Sect.F 2023 79 45 50 8F2W 37599788 Structure of a B-Form Dodecamer: 5'-CGCGAATTCGCG-3 2022-11-08 2023-02-22 Ogbonna, E.N.,Paul, A.,Farahat, A.A.,Terrell, J.R.,Mineva, E.,Ogbonna, V.,Boykin, D.W.,Wilson, W.D. X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au 2023 3 335 348 7U9B Crystal structure of indoline 7 with KPC-2 2022-03-10 2023-03-15 DeFrees, K.,Cambeis, E.M.,Chen, Y.,Renslo, A.R. Probing the binding hot spots of KPC-2 carbapenemase using reversible tetrazole-based inhibitors To Be Published 0 0 0 0 7UW2 36318154 Crystal structure of human Retinoid X receptor alpha ligand binding domain complex with UAB116 and coactivator peptide GRIP-1 2022-05-02 2023-03-15 Atigadda, V.R.,Kashyap, M.P.,Yang, Z.,Chattopadhyay, D.,Melo, N.,Sinha, R.,Belyaeva, O.V.,Chou, C.F.,Chang, P.L.,Kedishvili, N.Y.,Grubbs, C.J.,Renfrow, M.B.,Muccio, D.D.,Elmets, C.A.,Athar, M. Conformationally Defined Rexinoids for the Prevention of Inflammation and Nonmelanoma Skin Cancers. J.Med.Chem. 2022 65 14409 14423 7UW4 36318154 Crystal structure of human Retinoid X receptor alpha ligand binding domain complex with UAB113 and coactivator peptide GRIP-1 2022-05-02 2023-03-15 Atigadda, V.R.,Kashyap, M.P.,Yang, Z.,Chattopadhyay, D.,Melo, N.,Sinha, R.,Belyaeva, O.V.,Chou, C.F.,Chang, P.L.,Kedishvili, N.Y.,Grubbs, C.J.,Renfrow, M.B.,Muccio, D.D.,Elmets, C.A.,Athar, M. Conformationally Defined Rexinoids for the Prevention of Inflammation and Nonmelanoma Skin Cancers. J.Med.Chem. 2022 65 14409 14423 8DUF 36792007 Crystal structure of Venezuelan Equine Encephalitis alphavirus (VEEV) nonstructural protein 2 (nsp2) (K741A/K767A) protease domain 2022-07-27 2023-03-15 Hoffka, G.,Lountos, G.T.,Needle, D.,Wlodawer, A.,Waugh, D.S.,Tozser, J.,Motyan, J.A. Self-inhibited State of Venezuelan Equine Encephalitis Virus (VEEV) nsP2 Cysteine Protease: A Crystallographic and Molecular Dynamics Analysis. J.Mol.Biol. 2023 435 168012 168012 7U70 Crystal Structure of CTX-M-14 with compound 2 2022-03-07 2023-03-22 DeFrees, K.,Cambeis, E.M.,Chen, Y.,Renslo, A.R. Probing the binding hot spots of KPC-2 carbapenemase using reversible tetrazole-based inhibitors To Be Published 0 0 0 0 7U8S Crystal Structure of KPC-2 with compound 2 2022-03-09 2023-03-22 DeFrees, K.,Cambeis, E.M.,Chen, Y.,Renslo, A.R. Probing the binding hot spots of KPC-2 carbapenemase using reversible tetrazole-based inhibitors To Be Published 0 0 0 0 8BJ1 36842242 Crystal structure of Medicago truncatula histidinol-phosphate aminotransferase (HISN6) in the open state 2022-11-03 2023-03-22 Rutkiewicz, M.,Nogues, I.,Witek, W.,Angelaccio, S.,Contestabile, R.,Ruszkowski, M. Insights into the substrate specificity, structure, and dynamics of plant histidinol-phosphate aminotransferase (HISN6). Plant Physiol Biochem. 2023 196 759 773 8BJ2 36842242 Crystal structure of Medicago truncatula histidinol-phosphate aminotransferase (HISN6) in the closed state 2022-11-03 2023-03-22 Rutkiewicz, M.,Nogues, I.,Witek, W.,Angelaccio, S.,Contestabile, R.,Ruszkowski, M. Insights into the substrate specificity, structure, and dynamics of plant histidinol-phosphate aminotransferase (HISN6). Plant Physiol Biochem. 2023 196 759 773 8BJ3 36842242 Crystal structure of Medicago truncatula histidinol-phosphate aminotransferase (HISN6) in complex with histidinol-phosphate 2022-11-03 2023-03-22 Rutkiewicz, M.,Nogues, I.,Witek, W.,Angelaccio, S.,Contestabile, R.,Ruszkowski, M. Insights into the substrate specificity, structure, and dynamics of plant histidinol-phosphate aminotransferase (HISN6). Plant Physiol Biochem. 2023 196 759 773 7UE4 PANK3 complex structure with compound PZ-3855 2022-03-21 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UE7 PANK3 complex structure with compound PZ-3883 2022-03-21 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UE8 36251252 PANK3 complex structure with compound PZ-3890 2022-03-21 2023-03-29 Subramanian, C.,Frank, M.W.,Tangallapally, R.,Yun, M.K.,White, S.W.,Lee, R.E.,Rock, C.O.,Jackowski, S. Relief of CoA sequestration and restoration of mitochondrial function in a mouse model of propionic acidemia. J Inherit Metab Dis 2023 46 28 42 7UEP PANK3 complex structure with compound PZ-3860 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UEQ PANK3 complex structure with compound PZ-4061 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UER PANK3 complex structure with compound PZ-4071 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UES PANK3 complex structure with compound PZ-4202 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UET PANK3 complex structure with compound PZ-4140 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UEU PANK3 complex structure with compound PZ-4215 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UEV PANK3 complex structure with compound PZ-4200 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UEY PANK3 complex structure with compound PZ-4128 2022-03-22 2023-03-29 Tangallapally, R.,Edwards, A.,Subramanian, C.,Sharma, L.K.,Yun, M.,White, S.W.,Jackowski, S.,Rock, C.O.,Lee, R.E. Discovery of hPANK Activators with Improved Pharmacological Properties To Be Published 0 0 0 0 7UN7 36536104 DNA Polymerase lambda in complex with a 1nt microhomology substrate 2022-04-09 2023-03-29 Chandramouly, G.,Jamsen, J.,Borisonnik, N.,Tyagi, M.,Calbert, M.L.,Tredinnick, T.,Ozdemir, A.Y.,Kent, T.,Demidova, E.V.,Arora, S.,Wilson, S.H.,Pomerantz, R.T. Pol lambda promotes microhomology-mediated end-joining. Nat.Struct.Mol.Biol. 2023 30 107 114 8DIP 36603507 The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023030 2022-06-29 2023-03-29 Slavish, P.J.,Cuypers, M.G.,Rimmer, M.A.,Abdolvahabi, A.,Jeevan, T.,Kumar, G.,Jarusiewicz, J.A.,Vaithiyalingam, S.,Jones, J.C.,Bowling, J.J.,Price, J.E.,DuBois, R.M.,Min, J.,Webby, R.J.,Rankovic, Z.,White, S.W. Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. 2023 247 115035 115035 8DK6 36702826 Structure of hepatitis C virus envelope N-terminal truncated glycoprotein 2 (E2) (residues 456-713) from J6 genotype 2022-07-03 2023-03-29 Kumar, A.,Rohe, T.C.,Elrod, E.J.,Khan, A.G.,Dearborn, A.D.,Kissinger, R.,Grakoui, A.,Marcotrigiano, J. Regions of hepatitis C virus E2 required for membrane association. Nat Commun 2023 14 433 433 8DZB 36920943 Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor 11 2022-08-06 2023-04-05 Wang, L.,Ma, C.,Sacco, M.D.,Xue, S.,Mahmoud, M.,Calcul, L.,Chen, Y.,Wang, J.,Cai, J. Development of the Safe and Broad-Spectrum Aldehyde and Ketoamide Mpro inhibitors Derived from the Constrained alpha , gamma-AA Peptide Scaffold. Chemistry 2023 29 0 0 8DZC 36920943 Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor 17 2022-08-06 2023-04-05 Wang, L.,Ma, C.,Sacco, M.D.,Xue, S.,Mahmoud, M.,Calcul, L.,Chen, Y.,Wang, J.,Cai, J. Development of the Safe and Broad-Spectrum Aldehyde and Ketoamide Mpro inhibitors Derived from the Constrained alpha , gamma-AA Peptide Scaffold. Chemistry 2023 29 0 0 8EPU 36960093 1.6 A crystal structure of the lipocalin dog allergen Can f 1 with the C118S mutation 2022-10-06 2023-04-05 Min, J.,Foo, A.C.Y.,Gabel, S.A.,Perera, L.,DeRose, E.F.,Pomes, A.,Pedersen, L.C.,Mueller, G.A. Structural and ligand binding analysis of the pet allergens Can f 1 and Fel d 7. Front Allergy 2023 4 1133412 1133412 8EPV 36960093 2.2 A crystal structure of the lipocalin cat allergen Fel d 7 2022-10-06 2023-04-05 Min, J.,Foo, A.C.Y.,Gabel, S.A.,Perera, L.,DeRose, E.F.,Pomes, A.,Pedersen, L.C.,Mueller, G.A. Structural and ligand binding analysis of the pet allergens Can f 1 and Fel d 7. Front Allergy 2023 4 1133412 1133412 7TTD 37082747 Tubulin-RB3_SLD in complex with compound 12e 2022-02-01 2023-04-12 Pochampally, S.,Hartman, K.L.,Wang, R.,Wang, J.,Yun, M.K.,Parmar, K.,Park, H.,Meibohm, B.,White, S.W.,Li, W.,Miller, D.D. Design, Synthesis, and Biological Evaluation of Pyrimidine Dihydroquinoxalinone Derivatives as Tubulin Colchicine Site-Binding Agents That Displayed Potent Anticancer Activity Both In Vitro and In Vivo. Acs Pharmacol Transl Sci 2023 6 526 545 7TTE 37082747 Tubulin-RB3_SLD in complex with compound 12j 2022-02-01 2023-04-12 Pochampally, S.,Hartman, K.L.,Wang, R.,Wang, J.,Yun, M.K.,Parmar, K.,Park, H.,Meibohm, B.,White, S.W.,Li, W.,Miller, D.D. Design, Synthesis, and Biological Evaluation of Pyrimidine Dihydroquinoxalinone Derivatives as Tubulin Colchicine Site-Binding Agents That Displayed Potent Anticancer Activity Both In Vitro and In Vivo. Acs Pharmacol Transl Sci 2023 6 526 545 7U9D Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with PC(16:0/20:4) 2022-03-10 2023-04-12 Druzak, S.A. Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with PC(16:0/22:4) To Be Published 0 0 0 0 7UFN Structure of PfCSP peptide 21 with antibody P3-21 2022-03-22 2023-04-12 Tripathi, P.,Kwong, P.D. Structure of PfCSP peptide 21 with antibody P3-21 To Be Published 0 0 0 0 7UFO Structure of PfCSP peptide 21 with antibody P3-42 2022-03-23 2023-04-12 Tripathi, P.,Kwong, P.D. Structure of PfCSP peptide 21 with antibody P3-42 To Be Published 0 0 0 0 7UFQ Structure of PfCSP peptide 21 with antibody P3-43 2022-03-23 2023-04-12 Tripathi, P.,Kwong, P.D. Structure of PfCSP peptide 21 with antibody P3-43 To Be Published 0 0 0 0 7ULK 36938943 Human TRAP1 NM in complex with 42C 2022-04-05 2023-04-12 Stachowski, T.R.,Nithianantham, S.,Vanarotti, M.,Lopez, K.,Fischer, M. Pan-HSP90 ligand binding reveals isoform-specific differences in plasticity and water networks. Protein Sci. 2023 32 0 0 7ULL 36938943 Human Grp94 N-terminal domain in complex with 42C 2022-04-05 2023-04-12 Stachowski, T.R.,Nithianantham, S.,Vanarotti, M.,Lopez, K.,Fischer, M. Pan-HSP90 ligand binding reveals isoform-specific differences in plasticity and water networks. Protein Sci. 2023 32 0 0 8BVG 37047378 Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime 2022-12-03 2023-04-12 Goryacheva, E.,Efremov, R.,Krylov, N.,Artemyev, I.,Bogdanov, A.,Mamontova, A.,Pletnev, S.,Pletneva, N.,Pletnev, V. Crystal Structure of Bright Fluorescent Protein BrUSLEE with Subnanosecond Fluorescence Lifetime; Electric and Dynamic Properties. Int J Mol Sci 2023 24 0 0 8ER0 37062778 X-ray crystal structure of Tet(X6) bound to anhydrotetracycline 2022-10-11 2023-04-26 Kumar, H.,Williford, E.E.,Blake, K.S.,Virgin-Downey, B.,Dantas, G.,Wencewicz, T.A.,Tolia, N.H. Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases. Commun Biol 2023 6 423 423 8ER1 37062778 X-ray crystal structure of Tet(X6) 2022-10-11 2023-04-26 Kumar, H.,Williford, E.E.,Blake, K.S.,Virgin-Downey, B.,Dantas, G.,Wencewicz, T.A.,Tolia, N.H. Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases. Commun Biol 2023 6 423 423 8G24 37269950 Crystal Structure of Cathepsin-G and Neutrophil Elastase Inhibited by S. aureus EapH2 at pH 5.5 2023-02-03 2023-04-26 Mishra, N.,Herdendorf, T.J.,Prakash, O.,Geisbrecht, B.V. Simultaneous inhibition of two neutrophil serine proteases by the S. aureus innate immune evasion protein EapH2. J.Biol.Chem. 2023 299 104878 104878 8G25 37269950 Crystal Structure of Cathepsin-G and Neutrophil Elastase Inhibited by S. aureus EapH2 at pH 7.5 2023-02-03 2023-04-26 Mishra, N.,Herdendorf, T.J.,Prakash, O.,Geisbrecht, B.V. Simultaneous inhibition of two neutrophil serine proteases by the S. aureus innate immune evasion protein EapH2. J.Biol.Chem. 2023 299 104878 104878 8G26 37269950 Crystal Structure of Cathepsin-G and Neutrophil Elastase Inhibited by S. aureus EapH2 at pH 8.5 2023-02-03 2023-04-26 Mishra, N.,Herdendorf, T.J.,Prakash, O.,Geisbrecht, B.V. Simultaneous inhibition of two neutrophil serine proteases by the S. aureus innate immune evasion protein EapH2. J.Biol.Chem. 2023 299 104878 104878 8FAX 37014961 Fab 1249A8-MERS Stem Helix Complex 2022-11-28 2023-05-03 Deshpande, A.,Schormann, N.,Piepenbrink, M.S.,Martinez Sobrido, L.,Kobie, J.J.,Walter, M.R. Structure and epitope of a neutralizing monoclonal antibody that targets the stem helix of beta coronaviruses. Febs J. 2023 290 3422 3435 7MXS Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cr) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXV Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (ur) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXW Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (uf1) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXX Crystal structure of human exonuclease 1 Exo1 (R92A) in complex with 5' flap DNA (uf4) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 8DIN 36814926 The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant 2022-06-29 2023-05-10 Lu, J.,Spencer, M.,Zou, Z.,Traver, M.,Brzostowski, J.,Sun, P.D. Fc gamma RI FG-loop functions as a pH sensitive switch for IgG binding and release. Front Immunol 2023 14 1100499 1100499 8DIR 36814926 The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant 2022-06-29 2023-05-10 Lu, J.,Spencer, M.,Zou, Z.,Traver, M.,Brzostowski, J.,Sun, P.D. Fc gamma RI FG-loop functions as a pH sensitive switch for IgG binding and release. Front Immunol 2023 14 1100499 1100499 8DJ7 36814926 The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant 2022-06-30 2023-05-10 Lu, J.,Spencer, M.,Zou, Z.,Traver, M.,Brzostowski, J.,Sun, P.D. Fc gamma RI FG-loop functions as a pH sensitive switch for IgG binding and release. Front Immunol 2023 14 1100499 1100499 8FS1 37082867 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11a (YD905) 2023-01-09 2023-05-10 Zhou, J.,Deng, Y.,Iyamu, I.D.,Horton, J.R.,Yu, D.,Hajian, T.,Vedadi, M.,Rotili, D.,Mai, A.,Blumenthal, R.M.,Zhang, X.,Huang, R.,Cheng, X. Comparative Study of Adenosine Analogs as Inhibitors of Protein Arginine Methyltransferases and a Clostridioides difficile- Specific DNA Adenine Methyltransferase. Acs Chem.Biol. 2023 18 734 745 8FS2 37082867 CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11b (YD907) 2023-01-09 2023-05-10 Zhou, J.,Deng, Y.,Iyamu, I.D.,Horton, J.R.,Yu, D.,Hajian, T.,Vedadi, M.,Rotili, D.,Mai, A.,Blumenthal, R.M.,Zhang, X.,Huang, R.,Cheng, X. Comparative Study of Adenosine Analogs as Inhibitors of Protein Arginine Methyltransferases and a Clostridioides difficile- Specific DNA Adenine Methyltransferase. Acs Chem.Biol. 2023 18 734 745 7V0B Crystal structure of halogenase CtcP from Kitasatospora aureofaciens in complex with FAD 2022-05-10 2023-05-17 Hou, C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Crystal structures and complex formation of halogenase CtcP and FAD reductase CtcQ from the chlortetracycline biosynthetic pathway To Be Published 0 0 0 0 7V0D Crystal structure of halogenase CtcP from Kitasatospora aureofaciens 2022-05-10 2023-05-17 Hou, C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Crystal structures and complex formation of halogenase CtcP and FAD reductase CtcQ from the chlortetracycline biosynthetic pathway To Be Published 0 0 0 0 8CT0 Crystal structure of FAD reductase CtcQ from Kitasatospora aureofaciens in complex with FAD and NAD 2022-05-13 2023-05-17 Hou, C.,Garneau-Tsodikova, S.,Tsodikov, O.V. Crystal structures and complex formation of halogenase CtcP and FAD reductase CtcQ from the chlortetracycline biosynthetic pathway To Be Published 0 0 0 0 8FJ9 Structure of the catalytic domain of Streptococcus mutans GtfB in tetragonal space group P4322 2022-12-19 2023-05-17 Schormann, N.,Patel, M.,Thannickal, L.,Purushotham, S.,Wu, R.,Mieher, J.L.,Wu, H.,Deivanayagam, C. The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis Acta Crystallogr.,Sect.F 2023 79 119 127 8FJC Structure of the catalytic domain of Streptococcus mutans GtfB complexed to acarbose in tetragonal space group P4322 2022-12-19 2023-05-17 Schormann, N.,Patel, M.,Thannickal, L.,Purushotham, S.,Wu, R.,Mieher, J.L.,Wu, H.,Deivanayagam, C. The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis Acta Crystallogr.,Sect.F 2023 79 119 127 8FK4 Structure of the catalytic domain of Streptococcus mutans GtfB complexed to acarbose in orthorhombic space group P21212 2022-12-20 2023-05-17 Schormann, N.,Patel, M.,Thannickal, L.,Purushotham, S.,Wu, R.,Mieher, J.L.,Wu, H.,Deivanayagam, C. The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis Acta Crystallogr.,Sect.F 2023 79 119 127 8FKL Truncated form of the catalytic domain of Streptococcus mutans GtfB 2022-12-21 2023-05-17 Schormann, N.,Patel, M.,Thannickal, L.,Purushotham, S.,Wu, R.,Mieher, J.L.,Wu, H.,Deivanayagam, C. The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis Acta Crystallogr.,Sect.F 2023 79 119 127 8FN5 Structure of the truncated catalytic domain of Streptococcus mutans GtfD 2022-12-27 2023-05-17 Schormann, N.,Patel, M.,Thannickal, L.,Purushotham, S.,Wu, R.,Mieher, J.L.,Wu, H.,Deivanayagam, C. The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis Acta Crystallogr.,Sect.F 2023 79 119 127 8D02 37382447 Crystal Structure of Bacillus anthracis BxpB 2022-05-25 2023-05-24 Chattopadhyay, D.,Walker, D.R.,Rich-New, S.T.,Kearney, J.F.,Turnbough Jr., C.L. Crystal structure and induced stability of trimeric BxpB: implications for the assembly of BxpB-BclA complexes in the exosporium of Bacillus anthracis. Mbio 2023 14 0 0 8D0O 37202521 Human alpha1,3-fucosyltransferase FUT9, heavy atom derivative 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0P 37202521 Human FUT9, unliganded 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0R 37202521 Human FUT9 bound to GDP and H-Type 2 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0S 37202521 Human FUT9 bound to GDP and LNnT 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0U 37202521 Human FUT9 bound to GDP 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0W 37202521 Human FUT9 bound to H-Type 2 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8D0X 37202521 Human FUT9 bound to LNnT 2022-05-26 2023-05-24 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8FUI 37150084 HIV-1 wild type protease with GRL-02519A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group 2023-01-17 2023-05-24 Ghosh, A.K.,Mishevich, J.L.,Kovela, S.,Shaktah, R.,Ghosh, A.K.,Johnson, M.,Wang, Y.F.,Wong-Sam, A.,Agniswamy, J.,Amano, M.,Takamatsu, Y.,Hattori, S.I.,Weber, I.T.,Mitsuya, H. Exploration of imatinib and nilotinib-derived templates as the P2-Ligand for HIV-1 protease inhibitors: Design, synthesis, protein X-ray structural studies, and biological evaluation. Eur.J.Med.Chem. 2023 255 115385 115385 8FUJ 37150084 HIV-1 wild type protease with GRL-03419A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group and 3,5-difluorophenylmethyl as the P1 group 2023-01-17 2023-05-24 Ghosh, A.K.,Mishevich, J.L.,Kovela, S.,Shaktah, R.,Ghosh, A.K.,Johnson, M.,Wang, Y.F.,Wong-Sam, A.,Agniswamy, J.,Amano, M.,Takamatsu, Y.,Hattori, S.I.,Weber, I.T.,Mitsuya, H. Exploration of imatinib and nilotinib-derived templates as the P2-Ligand for HIV-1 protease inhibitors: Design, synthesis, protein X-ray structural studies, and biological evaluation. Eur.J.Med.Chem. 2023 255 115385 115385 8SU7 Crystal structure of Bacillus anthracis dihydroneopterin aldolase 2023-05-11 2023-05-24 Shaw, G.X.,Li, Y.,Yan, H.,Ji, X. Crystal structure of Bacillus anthracis dihydroneopterin aldolase To be published 0 0 0 0 8D0Q 37202521 Human FUT9 bound to GDP-CF3-Fucose and H-Type 2 2022-05-26 2023-05-31 Kadirvelraj, R.,Boruah, B.M.,Wang, S.,Chapla, D.,Huang, C.,Ramiah, A.,Hudson, K.L.,Prudden, A.R.,Boons, G.J.,Withers, S.G.,Wood, Z.A.,Moremen, K.W. Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. 2023 19 1022 1030 8STX 37741546 Crystal structure of the F337A mutation of Trypanosoma cruzi glucokinase in the apo form (open conformation) 2023-05-11 2023-05-31 Carey, S.M.,Kearns, S.P.,Millington, M.E.,Buechner, G.S.,Alvarez Jr., B.E.,Daneshian, L.,Abiskaroon, B.,Chruszcz, M.,D'Antonio, E.L. At the outer part of the active site in Trypanosoma cruzi glucokinase: The role of phenylalanine 337. Biochimie 2023 218 8 19 8SV5 Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin 2023-05-15 2023-06-07 Shaw, G.X.,Li, Y.,Yan, H.,Ji, X. Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin To be published 0 0 0 0 8SZD Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution 2023-05-29 2023-06-07 Shaw, G.X.,Cherry, S.,Tropea, J.E.,Waugh, D.S.,Ji, X. Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution To be published 0 0 0 0 8SZE Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim 2023-05-29 2023-06-07 Shaw, G.X.,Cherry, S.,Tropea, J.E.,Waugh, D.S.,Ji, X. Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim To be published 0 0 0 0 8D7I Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap1 from S. aureus 2022-06-07 2023-06-14 Gido, C.D.,Herdendorf, T.J.,Geisbrecht, B.V. Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap1 from S. aureus To Be Published 0 0 0 0 8D7K Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap2 from S. aureus 2022-06-07 2023-06-14 Gido, C.D.,Herdendorf, T.J.,Geisbrecht, B.V. Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap2 from S. aureus To Be Published 0 0 0 0 8D9Y Crystal structure of Taipan alpha-neurotoxin in complex with Centi-3FTX-D09 antibody 2022-06-12 2023-06-14 Glanville, J.,Andrade, J.,Bellin, M.,Kim, S.,Pletnev, S.,Tsao, D.,Verardi, R.,Bedi, R.,Friede, T.,Tully, E.,Zhang, B.,Bylund, T.,Liu, T.,Kwong, P.D. Venom protection by antibody from a snakebite hyperimmune subject To Be Published 0 0 0 0 8D9Z Crystal structure of Cobra alpha-neurotoxin in complex with Centi-3FTX-D09 antibody 2022-06-12 2023-06-14 Glanville, J.,Andrade, J.,Bellin, M.,Kim, S.,Pletnev, S.,Tsao, D.,Verardi, R.,Bedi, R.,Friede, T.,Tully, E.,Zhang, B.,Bylund, T.,Liu, T.,Kwong, P.D. Venom protection by antibody from a snakebite hyperimmune subject To Be Published 0 0 0 0 8DA0 Crystal structure of Mamba alpha-neurotoxin in complex with Centi-3FTX-D09 antibody 2022-06-12 2023-06-14 Glanville, J.,Andrade, J.,Bellin, M.,Kim, S.,Pletnev, S.,Tsao, D.,Verardi, R.,Bedi, R.,Friede, T.,Tully, E.,Zhang, B.,Bylund, T.,Liu, T.,Kwong, P.D. Venom protection by antibody from a snakebite hyperimmune subject To Be Published 0 0 0 0 8DA1 Crystal structure of Krait alpha-neurotoxin in complex with Centi-3FTX-D09 antibody 2022-06-12 2023-06-14 Glanville, J.,Andrade, J.,Bellin, M.,Kim, S.,Pletnev, S.,Tsao, D.,Verardi, R.,Bedi, R.,Friede, T.,Tully, E.,Zhang, B.,Bylund, T.,Liu, T.,Kwong, P.D. Venom protection by antibody from a snakebite hyperimmune subject To Be Published 0 0 0 0 8E7Q 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and 2-Phosphonopropionic acid 2022-08-24 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 8E7R 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and Phosphonoacetate 2022-08-24 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 8FG8 37285134 Catalytic domain of GtfB in complex with inhibitor 2-[(2,4,5-Trihydroxyphenyl)methylidene]-1-benzofuran-3-one 2022-12-12 2023-06-14 Ahirwar, P.,Kozlovskaya, V.,Nijampatnam, B.,Rojas, E.M.,Pukkanasut, P.,Inman, D.,Dolmat, M.,Law, A.C.,Schormann, N.,Deivanayagam, C.,Harber, G.J.,Michalek, S.M.,Wu, H.,Kharlampieva, E.,Velu, S.E. Hydrogel-Encapsulated Biofilm Inhibitors Abrogate the Cariogenic Activity of Streptococcus mutans . J.Med.Chem. 2023 66 7909 7925 8G7F 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and 1-hydroxypropylphosphonic acid 2023-02-16 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 8G7G 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and (1-hydroxy-2-methylpropyl)phosphonic acid 2023-02-16 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 8G7H 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and (1-hydroxypropan-2-yl)phosphonic acid 2023-02-16 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 8G7I 37252104 Crystal Structure of FosB from Bacillus cereus with Zinc and Sulfate 2023-02-16 2023-06-14 Travis, S.,Green, K.D.,Thamban Chandrika, N.,Pang, A.H.,Frantom, P.A.,Tsodikov, O.V.,Garneau-Tsodikova, S.,Thompson, M.K. Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus. Rsc Med Chem 2023 14 947 956 7TXB 37352301 Structure of the Class II Fructose-1,6-Bisphophatase from Mycobacterium tuberculosis complexed with substrate F1,6BP 2022-02-08 2023-06-28 Selezneva, A.I.,Harding, L.N.M.,Gutka, H.J.,Movahedzadeh, F.,Abad-Zapatero, C. New structures of Class II Fructose-1,6-Bisphosphatase from Francisella tularensis provide a framework for a novel catalytic mechanism for the entire class. Plos One 2023 18 0 0 8DAF 37328104 Human SF-1 LBD bound to synthetic agonist 6N-10CA and bacterial phospholipid 2022-06-13 2023-06-28 Cato, M.L.,D'Agostino, E.H.,Spurlin, R.M.,Flynn, A.R.,Cornelison, J.L.,Johnson, A.M.,Fujita, R.A.,Abraham, S.M.,Jui, N.T.,Ortlund, E.A. Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators. J.Biol.Chem. 2023 299 104921 104921 8GME Crystal structure of the gp32-Dda-dT17 complex 2023-03-24 2023-06-28 He, X.,Yun, M.K.,White, S.W. Crystal structure of the gp32-Dda-dT17 complex To Be Published 0 0 0 0 8S9I Crystal structure of the gp32 C-terminal peptide/Dda/dT8 2023-03-28 2023-06-28 He, X.,Yun, M.K.,White, S.W. Crystal structure of the gp32 C-terminal peptide/Dda/dT8 To Be Published 0 0 0 0 8SDW Crystal structure of the non-myristoylated mutant [L8K]Arf1 in complex with a GDP analogue 2023-04-07 2023-06-28 Rosenberg Jr., E.M.,Randazzo, P.A.,Esser, L.,Xia, D. Crystal structure of the non-myristoylated mutant [L8K]Arf1 in complex with a GDP analogue (CASP target) To Be Published 0 0 0 0 8E3K 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) 2022-08-17 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8E5Y 37352101 Human PU.1 ETS-Domain Bound to d(AATAAGCGGAAGTGGG) Acetate Free at pH 5.4 2022-08-22 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8E71 Staphylococcus aureus ClpP in complex with compound 3471 2022-08-23 2023-07-05 Singh, A.C.,Zhao, Y.,Griffith, E.C.,Tangallapally, R.,Jarret, M.W.,Lee, R.E. Development of a high throughput and site specific, fluorescent polarization assay to screen for activators of Caseinolytic Protease P leads to the discovery of synthetically tractable new activator class To Be Published 0 0 0 0 8E7P Staphylococcus aureus ClpP in complex with compound 3421 2022-08-24 2023-07-05 Singh, A.C.,Zhao, Y.,Griffith, E.C.,Tangallapally, R.,Jarret, M.W.,Lee, R.E. Development of a high throughput and site specific, fluorescent polarization assay to screen for activators of Caseinolytic Protease P leads to the discovery of synthetically tractable new activator class To Be Published 0 0 0 0 8EBH 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAATGGGG) 2022-08-31 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EE9 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAATGGGG) 2022-09-06 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8ENG 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Hemi-methylated CpG (forward strand) 2022-09-29 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EO1 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Hemi-methylated CpG (reverse strand) 2022-10-01 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EO4 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Di-methylated CpG sites 2022-10-02 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 7TN1 Multistate design to stabilize viral class I fusion proteins 2022-01-20 2023-07-12 Huang, J.,Gonzalez, K.,Banerjee, A.,Mousa, J.,Strauch, E. Multistate design to stabilize viral class I fusion proteins To Be Published 0 0 0 0 8DKF Antibody DH1030.1 Fab fragment 2022-07-05 2023-07-12 Gobeil, S.M.,Williams, W.,Henderson, R.C.,Janowska, K.,Speakman, M.,Huang, X.,Beaudoin, E.,Martin, M.,Stalls, V.,Manne, K.,Mansouri, K.,Edwards, R.J.,Sempowski, G.,Saunders, K.,Wiehe, K.,Haynes, B.F.,Acharya, P. DH1030.1 glycan reactive Ab To Be Published 0 0 0 0 8FN8 37356715 Crystal structure of the C-terminal Fg domain of TNC with the single FN domain of PTPRZ 2022-12-27 2023-07-12 Sinha, A.,Kawakami, J.,Cole, K.S.,Ladutska, A.,Nguyen, M.Y.,Zalmai, M.S.,Holder, B.L.,Broerman, V.M.,Matthews, R.T.,Bouyain, S. Protein-protein interactions between tenascin-R and RPTP zeta /phosphacan are critical to maintain the architecture of perineuronal nets. J.Biol.Chem. 2023 299 104952 104952 8FN9 37356715 Crystal structure of the C-terminal Fg domain of TNR with the single FN domain of PTPRZ 2022-12-27 2023-07-12 Sinha, A.,Kawakami, J.,Cole, K.S.,Ladutska, A.,Nguyen, M.Y.,Zalmai, M.S.,Holder, B.L.,Broerman, V.M.,Matthews, R.T.,Bouyain, S. Protein-protein interactions between tenascin-R and RPTP zeta /phosphacan are critical to maintain the architecture of perineuronal nets. J.Biol.Chem. 2023 299 104952 104952 8FNB 37356715 Crystal structure of the C-terminal Fg domain of human TNC with the mutations Y2140H and S2164H 2022-12-27 2023-07-12 Sinha, A.,Kawakami, J.,Cole, K.S.,Ladutska, A.,Nguyen, M.Y.,Zalmai, M.S.,Holder, B.L.,Broerman, V.M.,Matthews, R.T.,Bouyain, S. Protein-protein interactions between tenascin-R and RPTP zeta /phosphacan are critical to maintain the architecture of perineuronal nets. J.Biol.Chem. 2023 299 104952 104952 8TE5 38032267 Crystal structure of a multiple lysine-to-arginine substitution mutant of the human CRIg C3b-binding domain 2023-07-05 2023-07-12 Duan, H.,Abram, T.G.,Cruz, A.R.,Rooijakkers, S.H.M.,Geisbrecht, B.V. New Insights into the Complement Receptor of the Ig Superfamily Obtained from Structural and Functional Studies on Two Mutants. Immunohorizons 2023 7 806 818 8TE6 38032267 Crystal structure of a multiple lysine-to-arginine substitution mutant of the human CRIg C3b-binding domain 2023-07-05 2023-07-12 Duan, H.,Abram, T.G.,Cruz, A.R.,Rooijakkers, S.H.M.,Geisbrecht, B.V. New Insights into the Complement Receptor of the Ig Superfamily Obtained from Structural and Functional Studies on Two Mutants. Immunohorizons 2023 7 806 818 8SW0 37440518 Puromycin sensitive aminopeptidase 2023-05-17 2023-07-26 Madabushi, S.,Chow, K.M.,Song, E.S.,Goswami, A.,Hersh, L.B.,Rodgers, D.W. Structure of puromycin-sensitive aminopeptidase and polyglutamine binding. Plos One 2023 18 0 0 8SW1 37440518 Puromycin-sensitive aminopeptidase with bound peptide 2023-05-17 2023-07-26 Madabushi, S.,Chow, K.M.,Song, E.S.,Goswami, A.,Hersh, L.B.,Rodgers, D.W. Structure of puromycin-sensitive aminopeptidase and polyglutamine binding. Plos One 2023 18 0 0 8EB5 37491363 Tandem of Hermes transposase BED domain in complex with the quasi palindrome of its transposon left-end 2022-08-30 2023-08-02 Lannes, L.,Furman, C.M.,Hickman, A.B.,Dyda, F. Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding. Nat Commun 2023 14 4470 4470 8S9M 37414145 DNA cytosine-N4 methyltransferase (residues 79-324) from the Bdelloid rotifer Adineta vaga 2023-03-29 2023-08-02 Zhou, J.,Horton, J.R.,Kaur, G.,Chen, Q.,Li, X.,Mendoza, F.,Wu, T.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga. J.Biol.Chem. 2023 299 105017 105017 8SSQ 37439339 ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-4 2023-05-08 2023-08-02 Yang, J.,Horton, J.R.,Liu, B.,Corces, V.G.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res. 2023 51 8447 8462 8SSR 37439339 ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-20 2023-05-08 2023-08-02 Yang, J.,Horton, J.R.,Liu, B.,Corces, V.G.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res. 2023 51 8447 8462 8SSS 37439339 ZnFs 1-7 of CCCTC-binding factor (CTCF) Complexed with 23mer 2023-05-08 2023-08-02 Yang, J.,Horton, J.R.,Liu, B.,Corces, V.G.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res. 2023 51 8447 8462 8SST 37439339 ZnFs 1-7 of CCCTC-binding factor (CTCF) K365T Mutant Complexed with 23mer 2023-05-08 2023-08-02 Yang, J.,Horton, J.R.,Liu, B.,Corces, V.G.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res. 2023 51 8447 8462 8SSU 37439339 ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 19mer DNA 2023-05-08 2023-08-02 Yang, J.,Horton, J.R.,Liu, B.,Corces, V.G.,Blumenthal, R.M.,Zhang, X.,Cheng, X. Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res. 2023 51 8447 8462 8EO2 36947859 Lufaxin a bifunctional inhibitor of complement and coagulation 2022-10-01 2023-08-09 Andersen, J.F.,Lei, H.,Strayer, E.C.,Kanai, T.,Pham, V.,Pan, X.Z.,Alvarenga, P.H.,Gerber, G.F.,Asojo, O.A.,Francischetti, I.M.B.,Brodsky, R.A.,Valenzuela, J.G.,Ribeiro, J.M.C. A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism. Blood 2023 141 3109 3121 8F69 37592734 Crystal structure of murine PolG2 dimer bound to DNA 2022-11-16 2023-08-09 Wojtaszek, J.L.,Hoff, K.E.,Longley, M.J.,Kaur, P.,Andres, S.N.,Wang, H.,Williams, R.S.,Copeland, W.C. Structure-specific roles for PolG2-DNA complexes in maintenance and replication of mitochondrial DNA. Nucleic Acids Res. 2023 51 9716 9732 8F6B 37592734 Crystal structure of murine PolG2 hexamer bound to DNA 2022-11-16 2023-08-09 Wojtaszek, J.L.,Hoff, K.E.,Longley, M.J.,Kaur, P.,Andres, S.N.,Wang, H.,Williams, R.S.,Copeland, W.C. Structure-specific roles for PolG2-DNA complexes in maintenance and replication of mitochondrial DNA. Nucleic Acids Res. 2023 51 9716 9732 8T70 Cryptococcus neoformans protein farnesyltransferase in complex with FPTII and TKCMIIM peptide 2023-06-19 2023-08-09 Wang, Y.,Beese, L.S. Cryptococcus neoformans protein farnesyltransferase in complex with FPTII and TKCMIIM peptide To Be Published 0 0 0 0 8CRC 37603740 Structure of human Plk1 PBD in complex with Allopole-A 2023-03-08 2023-08-16 Park, J.E.,Kirsch, K.,Lee, H.,Oliva, P.,Ahn, J.I.,Ravishankar, H.,Zeng, Y.,Fox, S.D.,Kirby, S.A.,Badhwar, P.,Andresson, T.,Jacobson, K.A.,Lee, K.S. Specific inhibition of an anticancer target, polo-like kinase 1, by allosterically dismantling its mechanism of substrate recognition. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8EZK 37542029 Pfs25 in complex with transmission-reducing antibody AS01-04 2022-11-01 2023-08-16 Shukla, N.,Tang, W.K.,Coelho, C.H.,Long, C.A.,Healy, S.A.,Sagara, I.,Miura, K.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of the malaria vaccine antigen Pfs25. Npj Vaccines 2023 8 108 108 8EZM 37542029 Pfs25 in complex with transmission-reducing antibody AS01-63 2022-11-01 2023-08-16 Shukla, N.,Tang, W.K.,Coelho, C.H.,Long, C.A.,Healy, S.A.,Sagara, I.,Miura, K.,Duffy, P.E.,Tolia, N.H. A human antibody epitope map of the malaria vaccine antigen Pfs25. Npj Vaccines 2023 8 108 108 8F8N 38157339 Crystal structure of the Arabidopsis SPIRAL2 C-terminal domain 2022-11-22 2023-08-16 Bolhuis, D.L.,Dixit, R.,Slep, K.C. Crystal structure of the Arabidopsis SPIRAL2 C-terminal domain reveals a p80-Katanin-like domain. Plos One 2023 18 0 0 8SPP 37451485 Crystal structure of a heme enzyme RufO in rufomycin biosynthesis 2023-05-03 2023-08-23 Jordan, S.,Li, B.,Traore, E.,Wu, Y.,Usai, R.,Liu, A.,Xie, Z.R.,Wang, Y. Structural and spectroscopic characterization of RufO indicates a new biological role in rufomycin biosynthesis. J.Biol.Chem. 2023 299 105049 105049 8FXU 37598249 Thermoanaerobacter thermosaccharolyticum periplasmic Glucose-Binding Protein glucose complex: Badan conjugate attached at F17C 2023-01-25 2023-08-30 Allert, M.J.,Kumar, S.,Wang, Y.,Beese, L.S.,Hellinga, H.W. Chromophore carbonyl twisting in fluorescent biosensors encodes direct readout of protein conformations with multicolor switching. Commun Chem 2023 6 168 168 8GID 37660103 Crystal structure of a strain-transcending single-component Plasmodium falciparum AMA1-RON2L structure-based design immunogen 1 (SBD1) 2023-03-14 2023-08-30 Patel, P.N.,Dickey, T.H.,Diouf, A.,Salinas, N.D.,McAleese, H.,Ouahes, T.,Long, C.A.,Miura, K.,Lambert, L.E.,Tolia, N.H. Structure-based design of a strain transcending AMA1-RON2L malaria vaccine. Nat Commun 2023 14 5345 5345 8GIE 37660103 Crystal structure of a designed single-component Plasmodium falciparum AMA1-RON2L insertion fusion immunogen 2 2023-03-14 2023-08-30 Patel, P.N.,Dickey, T.H.,Diouf, A.,Salinas, N.D.,McAleese, H.,Ouahes, T.,Long, C.A.,Miura, K.,Lambert, L.E.,Tolia, N.H. Structure-based design of a strain transcending AMA1-RON2L malaria vaccine. Nat Commun 2023 14 5345 5345 8GIF 37660103 Crystal structure of a designed single-component Plasmodium falciparum AMA1-RON2L insertion fusion immunogen 3 2023-03-14 2023-08-30 Patel, P.N.,Dickey, T.H.,Diouf, A.,Salinas, N.D.,McAleese, H.,Ouahes, T.,Long, C.A.,Miura, K.,Lambert, L.E.,Tolia, N.H. Structure-based design of a strain transcending AMA1-RON2L malaria vaccine. Nat Commun 2023 14 5345 5345 8ELK 37615343 HRAS R97F Crystal Form 1 2022-09-26 2023-09-06 Johnson, C.W.,Fetics, S.K.,Davis, K.P.,Rodrigues, J.A.,Mattos, C. Allosteric site variants affect GTP hydrolysis on Ras. Protein Sci. 2023 32 0 0 8ELS 37615343 HRAS R97A Crystal Form 1 R-state 2022-09-26 2023-09-06 Johnson, C.W.,Fetics, S.K.,Davis, K.P.,Rodrigues, J.A.,Mattos, C. Allosteric site variants affect GTP hydrolysis on Ras. Protein Sci. 2023 32 0 0 8ELW 37615343 HRAS R97A Crystal Form 1 T-State 2022-09-26 2023-09-06 Johnson, C.W.,Fetics, S.K.,Davis, K.P.,Rodrigues, J.A.,Mattos, C. Allosteric site variants affect GTP hydrolysis on Ras. Protein Sci. 2023 32 0 0 8FG3 37615343 HRAS R97L Crystal Form 2 2022-12-12 2023-09-06 Johnson, C.W.,Fetics, S.K.,Davis, K.P.,Rodrigues, J.A.,Mattos, C. Allosteric site variants affect GTP hydrolysis on Ras. Protein Sci. 2023 32 0 0 8FG4 37615343 HRAS R97L Crystal Form 1 2022-12-12 2023-09-06 Johnson, C.W.,Fetics, S.K.,Davis, K.P.,Rodrigues, J.A.,Mattos, C. Allosteric site variants affect GTP hydrolysis on Ras. Protein Sci. 2023 32 0 0 8DOT 37644917 Structure of a methane clathrate binding protein 2022-07-14 2023-09-13 Huard, D.J.E.,Johnson, A.M.,Fan, Z.,Kenney, L.G.,Xu, M.,Drori, R.,Gumbart, J.C.,Dai, S.,Lieberman, R.L.,Glass, J.B. Molecular basis for inhibition of methane clathrate growth by a deep subsurface bacterial protein. Pnas Nexus 2023 2 0 0 8GKN Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with S-naringenin 2023-03-20 2023-09-13 Arriaza, R.H.,Dermauw, W.,Wybouw, N.,Van Leeuwen, T.,Chruszcz, M. Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with S-naringenin To Be Published 0 0 0 0 8SFU Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin 2023-04-11 2023-09-13 Arriaza, R.H.,Dermauw, W.,Wybouw, N.,Van Leeuwen, T.,Chruszcz, M. Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin To Be Published 0 0 0 0 8ELI 37989731 Broadly neutralizing antibody VRC34-combo.1 in complex with HIV fusion peptide (residue 512-519) 2022-09-24 2023-09-27 Banach, B.B.,Pletnev, S.,Olia, A.S.,Xu, K.,Zhang, B.,Rawi, R.,Bylund, T.,Doria-Rose, N.A.,Nguyen, T.D.,Fahad, A.S.,Lee, M.,Lin, B.C.,Liu, T.,Louder, M.K.,Madan, B.,McKee, K.,O'Dell, S.,Sastry, M.,Schon, A.,Bui, N.,Shen, C.H.,Wolfe, J.R.,Chuang, G.Y.,Mascola, J.R.,Kwong, P.D.,DeKosky, B.J. Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. Nat Commun 2023 14 7593 7593 8SJ7 Crystal structure of FBF-2 (RBD+CT) in complex with compact FBE RNA 2023-04-17 2023-09-27 Qiu, C.,Zhang, Z.,Wine, R.N.,Campbell, Z.T.,Zhang, J.,Hall, T.M.T. Competing intrinsically-disordered regions and electrostatic repulsion regulate PUF RNA-binding affinity To Be Published 0 0 0 0 8TV0 37686027 XptA2 wild type 2023-08-17 2023-09-27 Martin, C.L.,Chester, D.W.,Radka, C.D.,Pan, L.,Yang, Z.,Hart, R.C.,Binshtein, E.M.,Wang, Z.,Nagy, L.,DeLucas, L.J.,Aller, S.G. Structures of the Insecticidal Toxin Complex Subunit XptA2 Highlight Roles for Flexible Domains. Int J Mol Sci 2023 24 0 0 8F5H 38036525 SARS-CoV-2 S2 helix epitope scaffold 2022-11-14 2023-10-11 Kapingidza, A.B.,Marston, D.J.,Harris, C.,Wrapp, D.,Winters, K.,Mielke, D.,Xiaozhi, L.,Yin, Q.,Foulger, A.,Parks, R.,Barr, M.,Newman, A.,Schafer, A.,Eaton, A.,Flores, J.M.,Harner, A.,Catanzaro Jr., N.J.,Mallory, M.L.,Mattocks, M.D.,Beverly, C.,Rhodes, B.,Mansouri, K.,Van Itallie, E.,Vure, P.,Dunn, B.,Keyes, T.,Stanfield-Oakley, S.,Woods, C.W.,Petzold, E.A.,Walter, E.B.,Wiehe, K.,Edwards, R.J.,Montefiori, D.C.,Ferrari, G.,Baric, R.,Cain, D.W.,Saunders, K.O.,Haynes, B.F.,Azoitei, M.L. Engineered immunogens to elicit antibodies against conserved coronavirus epitopes. Nat Commun 2023 14 7897 7897 8FDO 38036525 SARS-CoV-2 fusion peptide epitope scaffold FP15 bound to DH1058 2022-12-04 2023-10-11 Kapingidza, A.B.,Marston, D.J.,Harris, C.,Wrapp, D.,Winters, K.,Mielke, D.,Xiaozhi, L.,Yin, Q.,Foulger, A.,Parks, R.,Barr, M.,Newman, A.,Schafer, A.,Eaton, A.,Flores, J.M.,Harner, A.,Catanzaro Jr., N.J.,Mallory, M.L.,Mattocks, M.D.,Beverly, C.,Rhodes, B.,Mansouri, K.,Van Itallie, E.,Vure, P.,Dunn, B.,Keyes, T.,Stanfield-Oakley, S.,Woods, C.W.,Petzold, E.A.,Walter, E.B.,Wiehe, K.,Edwards, R.J.,Montefiori, D.C.,Ferrari, G.,Baric, R.,Cain, D.W.,Saunders, K.O.,Haynes, B.F.,Azoitei, M.L. Engineered immunogens to elicit antibodies against conserved coronavirus epitopes. Nat Commun 2023 14 7897 7897 8FTT 37609231 Crystal structure of a glycosylase specific nanobody 2023-01-13 2023-10-11 Thompson, M.K.,Sharma, N.,Prakash, A. Deciphering the orthorhombic crystal structure of a novel NEIL1 nanobody with pseudo-merohedral twinning. Biorxiv 2023 0 0 0 8SZV 37729916 Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog SJPYT-318 2023-05-30 2023-10-11 Huber, A.D.,Poudel, S.,Li, Y.,Lin, W.,Wu, J.,Miller, D.J.,Chen, T. Ligand flexibility and binding pocket malleability cooperate to allow selective PXR activation by analogs of a promiscuous nuclear receptor ligand. Structure 2023 31 1545 0 8FE2 Structure of J-PKAc chimera complexed with Aplithianine A 2022-12-05 2023-10-18 Du, L.,Wilson, B.A.P.,Li, N.,Dalilian, M.,Wang, D.,Martinez Fiesco, J.A.,Smith, E.A.,Wamiru, A.,Goncharova, E.I.,Zhang, P.,O'Keefe, B.R. Structures of J-PKAc chimera complexed with Aplithianine and derivatives To Be Published 0 0 0 0 8FE5 37843072 Structure of J-PKAc chimera complexed with Aplithianine B 2022-12-05 2023-10-18 Du, L.,Wilson, B.A.P.,Li, N.,Shah, R.,Dalilian, M.,Wang, D.,Smith, E.A.,Wamiru, A.,Goncharova, E.I.,Zhang, P.,O'Keefe, B.R. Discovery and Synthesis of a Naturally Derived Protein Kinase Inhibitor that Selectively Inhibits Distinct Classes of Serine/Threonine Kinases. J.Nat.Prod. 2023 86 2283 2293 8FEC Structure of J-PKAc chimera complexed with Aplithianine derivative 2022-12-06 2023-10-18 Du, L.,Wilson, B.A.P.,Li, N.,Martinez Fiesco, J.A.,Dalilian, M.,Wang, D.,Smith, E.A.,Wamiru, A.,Goncharova, E.I.,Zhang, P.,O'Keefe, B.R. Structures of J-PKAc chimera complexed with Aplithianine and derivatives To Be Published 0 0 0 0 8UF5 28729722 Catalytic domain of GtfB in complex with inhibitor G43 2023-10-03 2023-10-18 Zhang, Q.,Nijampatnam, B.,Hua, Z.,Nguyen, T.,Zou, J.,Cai, X.,Michalek, S.M.,Velu, S.E.,Wu, H. Structure-Based Discovery of Small Molecule Inhibitors of Cariogenic Virulence. Sci Rep 2017 7 5974 0 8FK2 37074183 The N-terminal VicR from Streptococcus mutans 2022-12-20 2023-10-25 Liu, C.,Zhang, H.,Peng, X.,Blackledge, M.S.,Furlani, R.E.,Li, H.,Su, Z.,Melander, R.J.,Melander, C.,Michalek, S.,Wu, H. Small Molecule Attenuates Bacterial Virulence by Targeting Conserved Response Regulator. Mbio 2023 14 0 0 8FTM 37832548 Setx-ssRNA-ADP-SO4 complex 2023-01-12 2023-10-25 Appel, C.D.,Bermek, O.,Dandey, V.P.,Wood, M.,Viverette, E.,Williams, J.G.,Bouvette, J.,Riccio, A.A.,Krahn, J.M.,Borgnia, M.J.,Williams, R.S. Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell 2023 83 3692 0 8F1F 37938554 Structure of K48-linked tri-ubiquitin in complex with cyclic peptide 2022-11-05 2023-11-01 Lemma, B.,Zhang, D.,Vamisetti, G.B.,Wentz, B.G.,Suga, H.,Brik, A.,Lubkowski, J.,Fushman, D. Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun 2023 14 7212 7212 8F7Z 37989731 VRC34.01_mm28 bound to fusion peptide 2022-11-21 2023-11-01 Banach, B.B.,Pletnev, S.,Olia, A.S.,Xu, K.,Zhang, B.,Rawi, R.,Bylund, T.,Doria-Rose, N.A.,Nguyen, T.D.,Fahad, A.S.,Lee, M.,Lin, B.C.,Liu, T.,Louder, M.K.,Madan, B.,McKee, K.,O'Dell, S.,Sastry, M.,Schon, A.,Bui, N.,Shen, C.H.,Wolfe, J.R.,Chuang, G.Y.,Mascola, J.R.,Kwong, P.D.,DeKosky, B.J. Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. Nat Commun 2023 14 7593 7593 8GHI 37236358 Crystal structure of Staphylococcus aureus Lysophosphatidylglycerol phospholipase D 2023-03-10 2023-11-01 Subramanian, C.,Yun, M.K.,Frank, M.M.,Rock, C.O. Lysophosphatidylglycerol (LPG) phospholipase D maintains membrane homeostasis in Staphylococcus aureus by converting LPG to lysophosphatidic acid. J.Biol.Chem. 2023 299 104863 104863 8T8U 38216735 Crystal structure of Terrestrivirus full-length Inositol pyrophosphate kinase in complex with ADP 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T8V 38216735 Crystal structure of Terrestrivirus inositol pyrophosphate kinase in complex with ADP 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T8W 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ATP 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T8X 38216735 Crystal structure of Terrestrivirus inositol pyrophosphate kinase in complex with AMP-PNP 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T8Y 38216735 Crystal structure of Terrestrivirus inositol pyrophosphate kinase in complex with ADP and 1,4,5-InsP3 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T8Z 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and myo-(1OH)IP5 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T90 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and myo-(3OH)IP5 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T91 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and myo-IP6 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T92 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and scyllo-D-(1,2,3,4)-IP4 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T93 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and scyllo-L-(1,2,3,4)-IP4 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T95 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and scyllo-(1,2,4,5)-IP4 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T96 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and scyllo-IP5 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T97 38216735 Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and scyllo-IP6 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T98 38216735 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-3-PP-(1,2,4,5)IP4, Mg, and Fluoride ion 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8T99 38216735 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-L-1,4-[PP]2-(2,3)IP2, Mg, and Fluoride ion 2023-06-23 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8TF9 38216735 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-IP7, produced upon myo-IP6 phosphorylation by TvI 2023-07-09 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8TFA 38216735 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-PP-IP4, produced upon myo-(2OH)-IP5 phosphorylation by TvIPK 2023-07-09 2023-11-15 Zong, G.,Desfougeres, Y.,Portela-Torres, P.,Kwon, Y.U.,Saiardi, A.,Shears, S.B.,Wang, H. Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus. Embo J. 2024 43 462 480 8D00 Structure of the Arabidopsis thaliana SPIRAL2 TOG domain 2022-05-25 2023-11-29 Fan, Y.,Bilkey, N.,Bolhuis, D.L.,Slep, K.C.,Dixit, R. A structurally divergent TOG domain stabilizes microtubule minus ends in Arabidopsis Plant Cell 2023 0 0 0 8F8M LRH-1 bound to small molecule Tet and fragment of coactivator Tif2 2022-11-22 2023-11-29 Cato, M.L.,Abraham, S.M.,Spurlin, R.M.,Flynn, A.R.,Colucci, J.K.,D'Agostino, E.H.,Johnson, A.M.,Jui, N.T.,Ortlund, E.A. Isosteric improvements to liver receptor homolog-1 small molecule modulators To Be Published 0 0 0 0 8FJQ Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293G mutant 2022-12-20 2023-11-29 Khadka, S.,Geisbrecht, B.,Li, P. Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293G mutant To Be Published 0 0 0 0 8FJR Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293H mutant 2022-12-20 2023-11-29 Khadka, S.,Geisbrecht, B.,Li, P. Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293H mutant To Be Published 0 0 0 0 8T9U 38042148 Human PU.1 ETS-domain (165-270) in complex with d(AATAAGCGIAAGTGGG) 2023-06-26 2023-11-29 Vernon, T.N.,Terrell, J.R.,Albrecht, A.V.,Germann, M.W.,Wilson, W.D.,Poon, G.M.K. Dissection of integrated readout reveals the structural thermodynamics of DNA selection by transcription factors. Structure 2024 32 83 0 8ETN 37967728 The X-ray Crystal Structure of Tri-Ketone Dioxygenase from Rice 2022-10-17 2023-12-06 Duff, S.M.G.,Zhang, M.,Zinnel, F.,Rydel, T.,Taylor, C.M.,Chen, D.,Tilton, G.,Mamanella, P.,Duda, D.,Wang, Y.,Xiang, B.,Karunanandaa, B.,Varagona, R.,Chittoor, J.,Qi, Q.,Hall, E.,Garvey, G.,Zeng, J.,Zhang, J.,Li, X.,White, T.,Jerga, A.,Haas, J. Structural and functional characterization of triketone dioxygenase from Oryza Sativa. Biochim Biophys Acta Gen Subj 2023 1868 130504 130504 8G66 Structure with SJ3149 2023-02-14 2023-12-13 Miller, D.J.,Young, S.M.,Fischer, M. Structure of ternary complex with molecular glue targeting CK1A for degradation by the CRL4CRBN ubiquitin ligase To Be Published 0 0 0 0 8V4A Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine 2023-11-28 2023-12-13 Phillips, R.S. Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine To Be Published 0 0 0 0 8G4P 38168500 Crystal structure of the peanut allergen Ara h 2 bound by two neutralizing antibodies 13T1 and 13T5 2023-02-10 2023-12-20 Min, J.,Keswani, T.,LaHood, N.A.,Lytle, I.R.,Marini-Rapoport, O.,Andrieux, L.,Sneed, S.L.,Edwards, L.L.,Petrovich, R.M.,Perera, L.,Pomes, A.,Pedersen, L.C.,Patil, S.U.,Mueller, G.A. Design of an Ara h 2 hypoallergen from conformational epitopes. Clin Exp Allergy 2024 54 46 55 8V9P Proteus vulgaris tryptophan indole-lyase complexed with (3S)-dioxindolyl-L-alanine 2023-12-08 2023-12-20 Phillips, R.S. Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine To Be Published 0 0 0 0 8G9C 37773020 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- difluoromethylenebisphosphonate inositol pentakisphosphate (5-PCF2P-IP5), an analogue of 5-InsP7 2023-02-21 2024-01-03 Hostachy, S.,Wang, H.,Zong, G.,Franke, K.,Riley, A.M.,Schmieder, P.,Potter, B.V.L.,Shears, S.B.,Fiedler, D. Fluorination Influences the Bioisostery of Myo-Inositol Pyrophosphate Analogs. Chemistry 2023 29 0 0 8G9D 37773020 Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- phosphonodifluoroacetamide inositol pentakisphosphate (5-PCF2Am-InsP5), an analogue of 5-InsP7 2023-02-21 2024-01-03 Hostachy, S.,Wang, H.,Zong, G.,Franke, K.,Riley, A.M.,Schmieder, P.,Potter, B.V.L.,Shears, S.B.,Fiedler, D. Fluorination Influences the Bioisostery of Myo-Inositol Pyrophosphate Analogs. Chemistry 2023 29 0 0 8G9E 37773020 Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMP-PNP and 5-(PCF2P)-IP5, an analog of 5-IP7 2023-02-21 2024-01-03 Hostachy, S.,Wang, H.,Zong, G.,Franke, K.,Riley, A.M.,Schmieder, P.,Potter, B.V.L.,Shears, S.B.,Fiedler, D. Fluorination Influences the Bioisostery of Myo-Inositol Pyrophosphate Analogs. Chemistry 2023 29 0 0 8FRR 38168102 Wild-type myocilin olfactomedin domain 2023-01-08 2024-01-17 Saccuzzo, E.G.,Mebrat, M.D.,Scelsi, H.F.,Kim, M.,Ma, M.T.,Su, X.,Hill, S.E.,Rheaume, E.,Li, R.,Torres, M.P.,Gumbart, J.C.,Van Horn, W.D.,Lieberman, R.L. Competition between inside-out unfolding and pathogenic aggregation in an amyloid-forming beta-propeller. Nat Commun 2024 15 155 155 8GDL 38110569 Acid phosphatase pseudoenzyme from flea 2023-03-06 2024-01-17 Lu, S.,Andersen, J.F.,Bosio, C.F.,Hinnebusch, B.J.,Ribeiro, J.M. Acid phosphatase-like proteins, a biogenic amine and leukotriene-binding salivary protein family from the flea Xenopsylla cheopis. Commun Biol 2023 6 1280 1280 8TGP 37966275 Crystal structure of SIRT2 with FAM-PEG4-H4K16(myristoyl) peptide 2023-07-12 2024-01-24 Yang, J.,Nicely, N.I.,Weiser, B.P. Effects of Dimerization on the Deacylase Activities of Human SIRT2. Biochemistry 2023 62 3383 3395 8V6P Proteus vulgaris tryptophan indole-lyase complexed with 7-aza-L-tryptophan 2023-12-02 2024-01-31 Phillips, R.S. Proteus vulgaris tryptophan indole-lyase complexed with L-alanine To Be Published 0 0 0 0 8FXA Bromodomain of CBP liganded with iCBP4 2023-01-24 2024-02-07 Schonbrunn, E.,Bikowitz, M. Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition To Be Published 0 0 0 0 8FXE Bromodomain of CBP liganded with iCBP6 2023-01-24 2024-02-07 Schonbrunn, E.,Bikowitz, M. Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition To be published 0 0 0 0 8FXO Bromodomain of CBP liganded with iCBP8 2023-01-25 2024-02-07 Schonbrunn, E.,Bikowitz, M. Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition To be published 0 0 0 0 8T4R 38266163 RAG2-PHD finger in complex with H3K4tBuNle peptide 2023-06-09 2024-02-14 Travis, C.R.,Kean, K.M.,Albanese, K.I.,Henriksen, H.C.,Treacy, J.W.,Chao, E.Y.,Houk, K.N.,Waters, M.L. Trimethyllysine Reader Proteins Exhibit Widespread Charge-Agnostic Binding via Different Mechanisms to Cationic and Neutral Ligands. J.Am.Chem.Soc. 2024 146 3086 3093 8UIA 38309201 Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365097A 2023-10-10 2024-02-14 Barton, L.S.,Callahan, J.F.,Cantizani, J.,Concha, N.O.,Cotillo Torrejon, I.,Goodwin, N.C.,Joshi-Pangu, A.,Kiesow, T.J.,McAtee, J.J.,Mellinger, M.,Nixon, C.J.,Padron-Barthe, L.,Patterson, J.R.,Pearson, N.D.,Pouliot, J.J.,Rendina, A.R.,Buitrago Santanilla, A.,Schneck, J.L.,Sanz, O.,Thalji, R.K.,Ward, P.,Williams, S.P.,King, B.W. Exploration of the P1 residue in 3CL protease inhibitors leading to the discovery of a 2-tetrahydrofuran P1 replacement. Bioorg.Med.Chem. 2024 100 117618 117618 8UIF 38309201 Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365096A 2023-10-10 2024-02-14 Barton, L.S.,Callahan, J.F.,Cantizani, J.,Concha, N.O.,Cotillo Torrejon, I.,Goodwin, N.C.,Joshi-Pangu, A.,Kiesow, T.J.,McAtee, J.J.,Mellinger, M.,Nixon, C.J.,Padron-Barthe, L.,Patterson, J.R.,Pearson, N.D.,Pouliot, J.J.,Rendina, A.R.,Buitrago Santanilla, A.,Schneck, J.L.,Sanz, O.,Thalji, R.K.,Ward, P.,Williams, S.P.,King, B.W. Exploration of the P1 residue in 3CL protease inhibitors leading to the discovery of a 2-tetrahydrofuran P1 replacement. Bioorg.Med.Chem. 2024 100 117618 117618 8ULD 38309201 SARA CoV-2 3C-like protease in complex with GSK3487016A 2023-10-16 2024-02-14 Barton, L.S.,Callahan, J.F.,Cantizani, J.,Concha, N.O.,Cotillo Torrejon, I.,Goodwin, N.C.,Joshi-Pangu, A.,Kiesow, T.J.,McAtee, J.J.,Mellinger, M.,Nixon, C.J.,Padron-Barthe, L.,Patterson, J.R.,Pearson, N.D.,Pouliot, J.J.,Rendina, A.R.,Buitrago Santanilla, A.,Schneck, J.L.,Sanz, O.,Thalji, R.K.,Ward, P.,Williams, S.P.,King, B.W. Exploration of the P1 residue in 3CL protease inhibitors leading to the discovery of a 2-tetrahydrofuran P1 replacement. Bioorg.Med.Chem. 2024 100 117618 117618 8VD9 38310992 Crystal structure of Bacillus subtilis FabHA, beta-ketoacyl carrier protein synthase III 2023-12-14 2024-02-14 Radka, C.D.,Rock, C.O. Crystal structures of the fatty acid biosynthesis initiation enzymes in Bacillus subtilis. J.Struct.Biol. 2024 216 108065 108065 8VDB 38310992 Crystal structure of Bacillus subtilis FabHB, beta-ketoacyl carrier protein synthase III 2023-12-14 2024-02-14 Radka, C.D.,Rock, C.O. Crystal structures of the fatty acid biosynthesis initiation enzymes in Bacillus subtilis. J.Struct.Biol. 2024 216 108065 108065 8G6T Bromodomain of CBP liganded with inhibitor iCBP2 2023-02-15 2024-02-21 Schonbrunn, E.,Bikowitz, M. Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition To be published 0 0 0 0 8ILU Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor 2023-03-04 2024-03-06 Ghosh, K. Identification of Benzothiazole Derived Monosaccharides as Potent, Selective, and Orally Bioavailable Inhibitors of Human and Mouse Galectin-3 To Be Published 0 0 0 0 8U0O 38428373 Synaptic complex of human DNA polymerase Lambda DL variant engaged on a DNA double-strand break containing an unpaired 3' primer terminus 2023-08-29 2024-03-13 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. DNA polymerase lambda Loop1 variant yields unexpected gain-of-function capabilities in nonhomologous end-joining. DNA Repair (Amst) 2024 136 103645 103645 8U0P 38428373 Synaptic complex of human DNA polymerase Lambda DL variant engaged on a noncomplementary DNA double-strand break 2023-08-29 2024-03-13 Kaminski, A.M.,Chiruvella, K.K.,Ramsden, D.A.,Bebenek, K.,Kunkel, T.A.,Pedersen, L.C. DNA polymerase lambda Loop1 variant yields unexpected gain-of-function capabilities in nonhomologous end-joining. DNA Repair (Amst) 2024 136 103645 103645 8UHO 38309201 Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365096A 2023-10-09 2024-03-13 Barton, L.S.,Callahan, J.F.,Cantizani, J.,Concha, N.O.,Cotillo Torrejon, I.,Goodwin, N.C.,Joshi-Pangu, A.,Kiesow, T.J.,McAtee, J.J.,Mellinger, M.,Nixon, C.J.,Padron-Barthe, L.,Patterson, J.R.,Pearson, N.D.,Pouliot, J.J.,Rendina, A.R.,Buitrago Santanilla, A.,Schneck, J.L.,Sanz, O.,Thalji, R.K.,Ward, P.,Williams, S.P.,King, B.W. Exploration of the P1 residue in 3CL protease inhibitors leading to the discovery of a 2-tetrahydrofuran P1 replacement. Bioorg.Med.Chem. 2024 100 117618 117618 8GI3 Small GTPase RhoA mutant 2 2023-03-13 2024-03-20 Chen, X.,Qian, X.,Lowy, D.R.,Walters, K.J. Ras-like GTPases mutants structure To be published 0 0 0 0 8GI6 Small GTPase mutant ARG 2023-03-13 2024-03-20 Chen, X.,Qian, X.,Chandravanshi, M.,Lowy, D.R.,Walters, K.J. Ras-like GTPases mutant structures To be published 0 0 0 0 8TQ7 38456672 Crystal structure of Fab.34.2.12 in complex with MHC-I (H2-Dd) 2023-08-06 2024-03-20 Boyd, L.F.,Jiang, J.,Ahmad, J.,Natarajan, K.,Margulies, D.H. Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. 2024 0 0 0 8TQ8 38456672 Crystal structure of Fab.34.5.8 in complex with MHC-I (H2-Dd) 2023-08-06 2024-03-20 Boyd, L.F.,Jiang, J.,Ahmad, J.,Natarajan, K.,Margulies, D.H. Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. 2024 0 0 0 8TQ9 38456672 Crystal structure of Fab.S19.8 in complex with MHC-I (H2-Dd) 2023-08-06 2024-03-20 Boyd, L.F.,Jiang, J.,Ahmad, J.,Natarajan, K.,Margulies, D.H. Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. 2024 0 0 0 8TQA 38456672 Crystal structure of Fab.28.14.8 in complex with MHC-I (H2-Db) 2023-08-06 2024-03-20 Boyd, L.F.,Jiang, J.,Ahmad, J.,Natarajan, K.,Margulies, D.H. Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. 2024 0 0 0 8VBZ 38446051 Crystal structure of the transpeptidase domain of a S310A mutant of PBP2 from Neisseria gonorrhoeae strain H041 2023-12-13 2024-03-20 Turner, J.M.,Stratton, C.M.,Bala, S.,Cardenas Alvarez, M.,Nicholas, R.A.,Davies, C. Ureidopenicillins Are Potent Inhibitors of Penicillin-Binding Protein 2 from Multidrug-Resistant Neisseria gonorrhoeae H041. Acs Infect Dis. 2024 0 0 0 8VEN 38446051 Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with cefoperazone 2023-12-20 2024-03-20 Turner, J.M.,Stratton, C.M.,Bala, S.,Cardenas Alvarez, M.,Nicholas, R.A.,Davies, C. Ureidopenicillins Are Potent Inhibitors of Penicillin-Binding Protein 2 from Multidrug-Resistant Neisseria gonorrhoeae H041. Acs Infect Dis. 2024 0 0 0 8VEP 38446051 Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 acylated by piperacillin 2023-12-20 2024-03-20 Turner, J.M.,Stratton, C.M.,Bala, S.,Cardenas Alvarez, M.,Nicholas, R.A.,Davies, C. Ureidopenicillins Are Potent Inhibitors of Penicillin-Binding Protein 2 from Multidrug-Resistant Neisseria gonorrhoeae H041. Acs Infect Dis. 2024 0 0 0 8VEQ 38446051 Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with azlocillin 2023-12-20 2024-03-20 Turner, J.M.,Stratton, C.M.,Bala, S.,Cardenas Alvarez, M.,Nicholas, R.A.,Davies, C. Ureidopenicillins Are Potent Inhibitors of Penicillin-Binding Protein 2 from Multidrug-Resistant Neisseria gonorrhoeae H041. Acs Infect Dis. 2024 0 0 0 8FTQ 38509117 Crystal structure of hRpn13 Pru domain in complex with Ubiquitin and XL44 2023-01-13 2024-03-27 Lu, X.,Chandravanshi, M.,Sabbasani, V.R.,Gaikwad, S.,Hughitt, V.K.,Gyabaah-Kessie, N.,Scroggins, B.T.,Das, S.,Myint, W.,Clapp, M.E.,Schwieters, C.D.,Dyba, M.A.,Bolhuis, D.L.,Koscielniak, J.W.,Andresson, T.,Emanuele, M.J.,Brown, N.G.,Matsuo, H.,Chari, R.,Citrin, D.E.,Mock, B.A.,Swenson, R.E.,Walters, K.J. A structure-based designed small molecule depletes hRpn13 Pru and a select group of KEN box proteins. Nat Commun 2024 15 2485 2485 8GKV Crystal structure of anti-adaptor IraP that regulates RpoS proteolysis 2023-03-20 2024-03-27 Tripathi, A.,Hoskins, J.,Shaw, G.X.,Gan, J.,Tong, S.,Battesti, A.,Jenkins, L.M.,Ji, X.,Wickner, S.,Gottesman, S. Structural and functional study of anti-adaptor IraP-mediated regulation of RpoS proteolysis to be published 0 0 0 0 8IU1 Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor 2023-03-23 2024-03-27 Swidorski, J.J.,Beno, B.B.,Liu, C.,Yoon, D.,Ghosh, K.,Sale, H.,Shah, D.,Acharya, K.,Yanchunas, J.,Ellsworth, B.,Cheng, D.,Regueiro-Ren, A. Discovery and Exploration of Monosaccharide Linked Dimers to Target Fibrosis To Be Published 0 0 0 0 8TNN 38479361 Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with gp42 antibody A10 2023-08-02 2024-03-27 Bu, W.,Kumar, A.,Board, N.L.,Kim, J.,Dowdell, K.,Zhang, S.,Lei, Y.,Hostal, A.,Krogmann, T.,Wang, Y.,Pittaluga, S.,Marcotrigiano, J.,Cohen, J.I. Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity 2024 57 559 0 8TNT 38479361 Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with antibodies F-2-1 and 769C2 2023-08-02 2024-03-27 Bu, W.,Kumar, A.,Board, N.L.,Kim, J.,Dowdell, K.,Zhang, S.,Lei, Y.,Hostal, A.,Krogmann, T.,Wang, Y.,Pittaluga, S.,Marcotrigiano, J.,Cohen, J.I. Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity 2024 57 559 0 8TOO 38479361 Crystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12 2023-08-03 2024-03-27 Bu, W.,Kumar, A.,Board, N.L.,Kim, J.,Dowdell, K.,Zhang, S.,Lei, Y.,Hostal, A.,Krogmann, T.,Wang, Y.,Pittaluga, S.,Marcotrigiano, J.,Cohen, J.I. Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity 2024 57 559 0