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Crystal structure and biochemical characterization of human kallikrein 6 reveals a trypsin-like kallikrein is expressed in the central nervous system To be Published 0 0 0 0 1JBK 12054807 Crystal Structure of the First Nucelotide Binding Domain of ClpB 2001-06-05 2002-06-05 Li, J.,Sha, B. Crystal structure of E. coli Hsp100 ClpB nucleotide-binding domain 1 (NBD1) and mechanistic studies on ClpB ATPase activity. J.Mol.Biol. 2002 318 1127 1137 1L2Q 12029132 Crystal Structure of the Methanosarcina barkeri Monomethylamine Methyltransferase (MtmB) 2002-02-24 2002-06-05 Hao, B.,Gong, W.,Ferguson, T.K.,James, C.M.,Krzycki, J.A.,Chan, M.K. A new UAG-encoded residue in the structure of a methanogen methyltransferase. Science 2002 296 1462 1466 1JNU 12034897 Photoexcited structure of the plant photoreceptor domain, phy3 LOV2 2001-07-25 2002-06-14 Crosson, S.,Moffat, K. Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell 2002 14 1067 1075 1KW2 12048248 CRYSTAL STRUCTURE OF UNCOMPLEXED VITAMIN D-BINDING PROTEIN 2002-01-28 2002-06-19 Otterbein, L.R.,Cosio, C.,Graceffa, P.,Dominguez, R. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system. Proc.Natl.Acad.Sci.USA 2002 99 8003 8008 1KXP 12048248 CRYSTAL STRUCTURE OF HUMAN VITAMIN D-BINDING PROTEIN IN COMPLEX WITH SKELETAL ACTIN 2002-02-01 2002-06-19 Otterbein, L.R.,Cosio, C.,Graceffa, P.,Dominguez, R. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system. Proc.Natl.Acad.Sci.USA 2002 99 8003 8008 1KLY 11900543 Orotidine monophosphate decarboxylase D70G mutant complexed with 6-azaUMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KLZ 11900543 Crystal structure of orotidine monophosphate decarboxylase mutant D70A complexed with UMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM0 11900543 Crystal structure of orotidine monophosphate decarboxylase mutant D70N complexed with 6-azaUMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM1 11900543 Orotidine monophosphate decarboxylase mutant S127A crystal structure 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM2 11900543 crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM3 11900543 crystal structure of ODCase mutant K42A complexed with 6-azaUMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM4 11900543 crystal structure of ODCase mutant K72A complexed with UMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM5 11900543 Crystal structure of ODCase mutant D75N complexed with 6-azaUMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1KM6 11900543 Crystal structure of ODCase mutant D70AK72A complexed with OMP 2001-12-13 2002-06-28 Wu, N.,Gillon, W.,Pai, E.F. Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. Biochemistry 2002 41 4002 4011 1LOL 12011084 Crystal structure of orotidine monophosphate decarboxylase complex with XMP 2002-05-06 2002-08-07 Wu, N.,Pai, E.F. Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase. J.Biol.Chem. 2002 277 28080 28087 1LOQ 12011084 Crystal structure of orotidine monophosphate decarboxylase complexed with product UMP 2002-05-06 2002-08-07 Wu, N.,Pai, E.F. Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase. 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Betaine-homocysteine methyltransferase: zinc in a distorted barrel. Structure 2002 10 1159 1171 1M63 12218175 Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes 2002-07-12 2002-09-25 Huai, Q.,Kim, H.-Y.,Liu, Y.,Zhao, Y.,Mondragon, A.,Liu, J.O.,Ke, H. Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes Proc.Natl.Acad.Sci.USA 2002 99 12037 0 1HM5 12368100 CRYSTAL STRUCTURE ANALYSIS OF THE RABBIT D-GLUCOSE 6-PHOSPHATE ISOMERASE (NO LIGAND BOUND) 2000-12-04 2002-09-27 Arsenieva, D.A.,Jeffery, C.J. Conformational Changes in Phosphoglucose Isomerase Induced by Ligand Binding J.Mol.Biol. 2002 323 77 84 1LWS 12219083 Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence 2002-06-03 2002-09-27 Moure, C.M.,Gimble, F.S.,Quiocho, F.A. 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A structural Basis for the Mechanism of Aspartate-beta-semialdehyde Dehydrogenase from Vibrio Cholerae Protein Sci. 2003 12 27 33 1N6Q 12456667 HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) 2002-11-11 2003-01-14 Sarafianos, S.G.,Clark Jr., A.D.,Das, K.,Tuske, S.,Birktoft, J.J.,Ilankumaran, I.,Ramesha, A.R.,Sayer, J.M.,Jerina, D.M.,Boyer, P.L.,Hughes, S.H.,Arnold, E. Structures of HIV-1 Reverse Transcriptase with Pre- and Post-translocation AZTMP-terminated DNA Embo J. 2002 21 6614 6624 1M5N 12504010 Crystal structure of HEAT repeats (1-11) of importin b bound to the non-classical NLS(67-94) of PTHrP 2002-07-09 2003-01-21 Cingolani, G.,Bednenko, J.,Gillespie, M.T.,Gerace, L. Molecular basis for the recognition of a nonclassical nuclear localization signal by importin beta Mol.Cell 2002 10 1345 1353 1N5Y 12456667 HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P) 2002-11-07 2003-01-28 Sarafianos, S.G.,Clark Jr., A.D.,Das, K.,Tuske, S.,Birktoft, J.J.,Ilankumaran, P.,Ramesha, A.R.,Sayer, J.M.,Jerina, D.M.,Boyer, P.L.,Hughes, S.H.,Arnold, E. Structure of HIV-1 Reverse Transcriptase with Pre-Translocation and Post-Translocation AZTMP-Terminated DNA Embo J. 2002 21 6614 6624 1M6X 12559911 Flpe-Holliday Junction Complex 2002-07-17 2003-02-04 Conway, A.B.,Chen, Y.,Rice, P.A. Structural Plasticity of the Flp-Holliday Junction Complex J.Mol.Biol. 2003 326 425 434 1MI5 12530975 The crystal structure of LC13 TcR in complex with HLAB8-EBV peptide complex 2002-08-21 2003-02-04 Kjer-Nielsen, L.,Clements, C.S.,Purcell, A.W.,Brooks, A.G.,Whisstock, J.C.,Burrows, S.R.,McCluskey, J.,Rossjohn, J. 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Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding Biochemistry 2004 43 13637 13647 1X8Q 15504026 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus in Complex with Water at pH 5.6 2004-08-18 2004-10-05 Kondrashov, D.A.,Roberts, S.A.,Weichsel, A.,Montfort, W.R. Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding Biochemistry 2004 43 13637 13647 1TN6 15451670 Protein Farnesyltransferase Complexed with a Rap2a Peptide Substrate and a FPP Analog at 1.8A Resolution 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity J.Mol.Biol. 2004 343 417 433 1PXZ 15539389 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen 2003-07-07 2004-11-16 Czerwinski, E.W.,Midoro-Horiuti, T.,White, M.A.,Brooks, E.G.,Goldblum, R.M. Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core. J.Biol.Chem. 2005 280 3740 3746 1PI3 E28Q mutant Benzoylformate Decarboxylase From Pseudomonas Putida 2003-05-29 2004-11-23 Bera, A.K.,Hasson, M.S. High resolution structure of Benzoylformate Decarboxylate E28Q mutant To be Published 0 0 0 0 1PO7 HIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA 2003-06-13 2004-11-23 Bera, A.K.,Anderson, N.L.,Hasson, M.S. High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase from Pseudomonas Putida To be Published 0 0 0 0 1Q6Z HIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPLEXED WITH THIAMIN THIAZOLONE DIPHOSPHATE 2003-08-14 2004-11-23 Bera, A.K.,Anderson, N.L.,Hasson, M.S. High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate To be Published 0 0 0 0 1R5K 15893725 Human Estrogen Receptor alpha Ligand-Binding Domain In Complex With GW5638 2003-10-10 2004-11-23 Wu, Y.L.,Yang, X.,Ren, Z.,McDonnell, D.P.,Norris, J.D.,Willson, T.M.,Greene, G.L. Structural basis for an unexpected mode of SERM-mediated ER antagonism. Mol.Cell 2005 18 413 424 1T0N 15210799 Conformational switch in polymorphic H-2K molecules containing an HSV peptide 2004-04-12 2004-11-23 Webb, A.I.,Borg, N.A.,Dunstone, M.A.,Kjer-Nielsen, L.,Beddoe, T.,McCluskey, J.,Carbone, F.R.,Bottomley, S.P.,Aguilar, M.I.,Purcell, A.W.,Rossjohn, J. The structure of H-2K(b) and K(bm8) complexed to a herpes simplex virus determinant: evidence for a conformational switch that governs T cell repertoire selection and viral resistance. J Immunol. 2004 173 402 409 1TJX 15340165 Crystallographic Identification of Ca2+ Coordination Sites in Synaptotagmin I C2B Domain 2004-06-07 2004-11-23 Cheng, Y.,Sequeira, S.M.,Malinina, L.,Tereshko, V.,Sollner, T.H.,Patel, D.J. Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain. Protein Sci. 2004 13 2665 2672 1X9F 15504406 Hemoglobin Dodecamer from Lumbricus Erythrocruorin 2004-08-20 2004-11-30 Strand, K.,Knapp, J.E.,Bhyravbhatla, B.,Royer Jr., W.E. Crystal structure of the hemoglobin dodecamer from lumbricus erythrocruorin: allosteric core of giant annelid respiratory complexes J.Mol.Biol. 2004 344 119 134 1SNG 15590653 Structure of a Thermophilic Serpin in the Native State 2004-03-10 2004-12-14 Fulton, K.F.,Buckle, A.M.,Cabrita, L.D.,Irving, J.A.,Butcher, R.E.,Smith, I.,Reeve, S.,Lesk, A.M.,Bottomley, S.P.,Rossjohn, J.,Whisstock, J.C. The high resolution crystal structure of a native thermostable serpin reveals the complex mechanism underpinning the stressed to relaxed transition. J.Biol.Chem. 2005 280 8435 8442 1XZW 15625111 Sweet potato purple acid phosphatase/phosphate complex 2004-11-12 2004-12-14 Schenk, G.,Gahan, L.R.,Carrington, L.E.,Mitic, N.,Valizadeh, M.,Hamilton, S.E.,de Jersey, J.,Guddat, L.W. Phosphate forms an unusual tripodal complex with the Fe-Mn center of sweet potato purple acid phosphatase Proc.Natl.Acad.Sci.USA 2005 102 273 278 1T9A 15709745 Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea herbicide, tribenuron methyl 2004-05-16 2004-12-21 McCourt, J.A.,Pang, S.S.,Guddat, L.W.,Duggleby, R.G. Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase. Biochemistry 2005 44 2330 2338 1T9B 15709745 Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea herbicide, chlorsulfuron 2004-05-16 2004-12-21 McCourt, J.A.,Pang, S.S.,Guddat, L.W.,Duggleby, R.G. Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase. Biochemistry 2005 44 2330 2338 1T9C 15709745 Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Sulfometuron methyl 2004-05-16 2004-12-21 McCourt, J.A.,Pang, S.S.,Guddat, L.W.,Duggleby, R.G. Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase. Biochemistry 2005 44 2330 2338 1T9D 15709745 Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Metsulfuron methyl 2004-05-16 2004-12-21 McCourt, J.A.,Pang, S.S.,Guddat, L.W.,Duggleby, R.G. Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase. Biochemistry 2005 44 2330 2338 1TUY 15647264 Acetate Kinase complexed with ADP, AlF3 and acetate 2004-06-25 2005-01-11 Gorrell, A.,Lawrence, S.H.,Ferry, J.G. Structural and Kinetic Analyses of Arginine Residues in the Active Site of the Acetate Kinase from Methanosarcina thermophila. J.Biol.Chem. 2005 280 10731 10742 1XJT 15637279 Crystal structure of active form of P1 phage endolysin Lyz 2004-09-24 2005-01-11 Xu, M.,Arulandu, A.,Struck, D.K.,Swanson, S.,Sacchettini, J.C.,Young, R. Disulfide isomerization after membrane release of its SAR domain activates P1 lysozyme. Science 2005 307 113 117 1XJU 15637279 Crystal structure of secreted inactive form of P1 phage endolysin Lyz 2004-09-24 2005-01-11 Xu, M.,Arulandu, A.,Struck, D.K.,Swanson, S.,Sacchettini, J.C.,Young, R. Disulfide isomerization after membrane release of its SAR domain activates P1 lysozyme. Science 2005 307 113 117 2BFU 16873025 X-ray structure of CPMV top component 2004-12-13 2005-01-12 Ochoa, W.F.,Chatterji, A.,Lin, T.,Johnson, J.E. Generation and Structural Analysis of Reactive Empty Particles Derived from an Icosahedral Virus. Chem.Biol. 2006 13 771 0 1S3R 15637162 Crystal structure of the human-specific toxin intermedilysin 2004-01-14 2005-01-25 Polekhina, G.,Giddings, K.S.,Tweten, R.K.,Parker, M.W. Insights into the action of the superfamily of cholesterol-dependent cytolysins from studies of intermedilysin Proc.Natl.Acad.Sci.Usa 2005 102 600 605 1YGY 15668249 Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis 2005-01-05 2005-01-25 Dey, S.,Grant, G.A.,Sacchettini, J.C. Crystal Structure of Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase: EXTREME ASYMMETRY IN A TETRAMER OF IDENTICAL SUBUNITS J.Biol.Chem. 2005 280 14892 14899 1YHU 15710902 Crystal structure of Riftia pachyptila C1 hemoglobin reveals novel assembly of 24 subunits. 2005-01-10 2005-02-08 Flores, J.F.,Fisher, C.R.,Carney, S.L.,Green, B.N.,Freytag, J.K.,Schaeffer, S.W.,Royer Jr, W.E. Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin. Proc.Natl.Acad.Sci.Usa 2005 102 2713 2718 1T31 15741158 A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation 2004-04-23 2005-03-01 de Garavilla, L.,Greco, M.N.,Sukumar, N.,Chen, Z.W.,Pineda, A.O.,Mathews, F.S.,Di Cera, E.,Giardino, E.C.,Wells, G.I.,Haertlein, B.J.,Kauffman, J.A.,Corcoran, T.W.,Derian, C.K.,Eckardt, A.J.,Damiano, B.P.,Andrade-Gordon, P.,Maryanoff, B.E. A novel, potent dual inhibitor of the leukocyte proteases cathepsin G and chymase: molecular mechanisms and anti-inflammatory activity in vivo. J.Biol.Chem. 2005 280 18001 18007 1T32 15741158 A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic Efficacy in Animals Models of Inflammation 2004-04-23 2005-03-01 de Garavilla, L.,Greco, M.N.,Sukumar, N.,Chen, Z.W.,Pineda, A.O.,Mathews, F.S.,Di Cera, E.,Giardino, E.C.,Wells, G.I.,Haertlein, B.J.,Kauffman, J.A.,Corcoran, T.W.,Derian, C.K.,Eckardt, A.J.,Damiano, B.P.,Andrade-Gordon, P.,Maryanoff, B.E. A novel, potent dual inhibitor of the leukocyte proteases cathepsin G and chymase: molecular mechanisms and anti-inflammatory activity in vivo. J.Biol.Chem. 2005 280 18001 18007 1YN4 15691839 Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens 2005-01-23 2005-03-01 Geisbrecht, B.V.,Hamaoka, B.Y.,Perman, B.,Zemla, A.,Leahy, D.J. The Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens. J.Biol.Chem. 2005 280 17243 17250 1SI6 Crystal structure of cimex nitrophorin complex with CO 2004-02-27 2005-03-08 Weichsel, A.,Montfort, W.R. Structure of cimex nitrophorin complex with carbon monoxide To be Published 0 0 0 0 1VRN 15858271 PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC) 2005-02-23 2005-03-22 Baxter, R.H.,Seagle, B.L.,Ponomarenko, N.,Norris, J.R. Cryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark. Acta Crystallogr.,Sect.D 2005 61 605 612 1SAZ 19201797 Membership in the ASKHA Superfamily: Enzymological Properties and Crystal Structure of Butyrate Kinase 2 from Thermotoga maritima 2004-02-09 2005-03-29 Diao, J.,Hasson, M.S. Crystal structure of butyrate kinase 2 from Thermotoga maritima, a member of the ASKHA superfamily of phosphotransferases. J.Bacteriol. 2009 191 2521 2529 1XEN 15796505 High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To Formate 2004-09-10 2005-03-29 Jain, R.,Hao, B.,Liu, R.-P.,Chan, M.K. Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal J.Am.Chem.Soc. 2005 127 4558 4559 1XEO 15796505 High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound To Formate 2004-09-10 2005-03-29 Jain, R.,Hao, B.,Liu, R.-P.,Chan, M.K. Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal J.Am.Chem.Soc. 2005 127 4558 4559 1XJ2 15779889 CO-bound structure of bjFixLH 2004-09-22 2005-03-29 Key, J.,Moffat, K. Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling Biochemistry 2005 44 4627 4635 1XJ3 15779889 bjFixLH in unliganded ferrous form 2004-09-22 2005-03-29 Key, J.,Moffat, K. Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling Biochemistry 2005 44 4627 4635 1XJ4 15779889 CO-bound structure of BjFixLH 2004-09-22 2005-03-29 Key, J.,Moffat, K. Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling Biochemistry 2005 44 4627 4635 1XJ6 15779889 Structure of bjFixLH in the unliganded ferrous form 2004-09-22 2005-03-29 Key, J.,Moffat, K. Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling Biochemistry 2005 44 4627 4635 1RXT Crystal structure of human myristoyl-CoA:protein N-myristoyltransferase. 2003-12-18 2005-04-12 Yang, J.,Wang, Y.,Frey, G.,Abeles, R.H.,Petsko, G.A.,Ringe, D. 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Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc.Natl.Acad.Sci.Usa 2005 102 7163 7168 1ZE1 14990747 Conformational Change of Pseudouridine 55 Synthase upon Its Association with RNA Substrate 2005-04-16 2005-04-26 Phannachet, K.,Huang, R.H. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate Nucleic Acids Res. 2004 32 1422 1429 1ZE2 14990747 Conformational change of pseudouridine 55 synthase upon its association with RNA substrate 2005-04-16 2005-04-26 Phannachet, K.,Huang, R.H. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate Nucleic Acids Res. 2004 32 1422 1429 1VRP 12437342 The 2.1 Structure of T. californica Creatine Kinase Complexed with the Transition-State Analogue Complex, ADP-Mg 2+ /NO3-/Creatine 2005-04-25 2005-05-03 Lahiri, S.D.,Wang, P.F.,Babbitt, P.C.,McLeish, M.J.,Kenyon, G.L.,Allen, K.N. The 2.1 A Structure of Torpedo californica Creatine Kinase Complexed with the ADP-Mg(2+)-NO3(-)-Creatine Transition-State Analogue Complex Biochemistry 2002 41 13861 13867 1XFV 15719022 Crystal structure of anthrax edema factor (EF) in complex with calmodulin and 3' deoxy-ATP 2004-09-15 2005-05-03 Shen, Q.,Zhukovskaya, N.L.,Guo, Q.,Florian, J.,Tang, W.J. Calcium-independent calmodulin binding and two-metal-ion catalytic mechanism of anthrax edema factor. EMBO J. 2005 24 929 941 1XFY 15719022 Crystal structure of anthrax edema factor (EF) in complex with calmodulin 2004-09-15 2005-05-03 Shen, Y.,Zhukovskaya, N.L.,Guo, Q.,Florian, J.,Tang, W.J. Calcium-independent calmodulin binding and two-metal-ion catalytic mechanism of anthrax edema factor. EMBO J. 2005 24 929 941 1T68 Crystal structure of nitrophorin 2 complex with NO 2004-05-05 2005-05-17 Weichsel, A.,Montfort, W.R. 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The high resolution structures of highly bulged viral epitopes bound to the major histocompatability class I: Implications for T-cell receptor engagement and T-cell immunodominance J.Biol.Chem. 2005 280 23900 23909 1ZHL 15849183 Crystal structure of HLA-B*3508 presenting 13-mer EBV antigen LPEPLPQGQLTAY 2005-04-26 2005-05-17 Tynan, F.E.,Borg, N.A.,Miles, J.J.,Beddoe, T.,El-Hassen, D.,Silins, S.L.,van Zuylen, W.J.,Purcell, A.W.,Kjer-Nielsen, L.,McCluskey, J.,Burrows, S.R.,Rossjohn, J. The high resolution structures of highly bulged viral epitopes bound to the major histocompatability class I: Implications for T-cell receptor engagement and T-cell immunodominance J.Biol.Chem. 2005 280 23900 23909 1ZKN 14668322 Structure of PDE4D2-IBMX 2005-05-03 2005-05-17 Huai, Q.,Liu, Y.,Francis, S.H.,Corbin, J.D.,Ke, H. Crystal Structures of Phosphodiesterases 4 and 5 in Complex with Inhibitor 3-Isobutyl-1-Methylxanthine Suggest a Conformation Determinant of Inhibitor Selectivity J.Biol.Chem. 2004 279 13095 13101 1YHV 15893667 Crystal Structure of PAK1 kinase domain with two point mutations (K299R, T423E) 2005-01-10 2005-05-24 Lei, M.,Robinson, M.A.,Harrison, S.C. The Active Conformation of the PAK1 Kinase Domain Structure 2005 13 769 778 1YHW 15893667 Crystal Structure of PAK1 kinase domain with one point mutations (K299R) 2005-01-10 2005-05-24 Lei, M.,Robinson, M.A.,Harrison, S.C. The Active Conformation of the PAK1 Kinase Domain Structure 2005 13 769 778 1ZSD 16148129 Crystal Structure Of HLA-B*3501 Presenting an 11-Mer EBV Antigen EPLPQGQLTAY 2005-05-24 2005-06-07 Miles, J.J.,Elhassen, D.,Borg, N.A.,Silins, S.L.,Tynan, F.E.,Burrows, J.M.,Purcell, A.W.,Kjer-Nielsen, L.,Rossjohn, J.,Burrows, S.R.,McCluskey, J.,El-Hassen, D. CTL Recognition of a Bulged Viral Peptide Involves Biased TCR Selection. J.Immunol. 2005 175 3826 3834 1YRX 15924418 Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides 2005-02-05 2005-06-28 Anderson, S.,Dragnea, V.,Masuda, S.,Ybe, J.,Moffat, K.,Bauer, C. Structure of a Novel Photoreceptor, the BLUF Domain of AppA from Rhodobacter sphaeroides Biochemistry 2005 44 7998 8005 1ZK7 16114877 Crystal Structure of Tn501 MerA 2005-05-02 2005-07-05 Ledwidge, R.,Patel, B.,Dong, A.,Fiedler, D.,Falkowski, M.,Zelikova, J.,Summers, A.O.,Pai, E.F.,Miller, S.M. NmerA, the Metal Binding Domain of Mercuric Ion Reductase, Removes Hg(2+) from Proteins, Delivers It to the Catalytic Core, and Protects Cells under Glutathione-Depleted Conditions Biochemistry 2005 44 11402 11416 1ZX9 16114877 Crystal Structure of Tn501 MerA 2005-06-07 2005-07-05 Ledwidge, R.,Patel, B.,Dong, A.,Fiedler, D.,Falkowski, M.,Zelikova, J.,Summers, A.O.,Pai, E.F.,Miller, S.M. 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J.Biol.Chem. 2005 280 29393 29396 1YNV 16288913 Asp79 makes a large, unfavorable contribution to the stability of RNase Sa 2005-01-25 2005-07-19 Trevino, S.R.,Gokulan, K.,Newsom, S.,Thurlkill, R.L.,Shaw, K.L.,Mitkevich, V.A.,Makarov, A.A.,Sacchettini, J.C.,Scholtz, J.M.,Pace, C.N. Asp79 Makes a Large, Unfavorable Contribution to the Stability of RNase Sa. J.Mol.Biol. 2005 354 967 978 1Z7S 16004874 The crystal structure of coxsackievirus A21 2005-03-28 2005-08-02 Xiao, C.,Bator-Kelly, C.M.,Rieder, E.,Chipman, P.R.,Craig, A.,Kuhn, R.J.,Wimmer, E.,Rossmann, M.G. The crystal structure of coxsackievirus a21 and its interaction with icam-1. Structure 2005 13 1019 1033 1ZRQ 16114881 Escherichia coli Methylenetetrahydrofolate Reductase (reduced) complexed with NADH, pH 6.0 2005-05-19 2005-08-09 Pejchal, R.,Sargeant, R.,Ludwig, M.L. Structures of NADH and CH(3)-H(4)Folate Complexes of Escherichia coli Methylenetetrahydrofolate Reductase Reveal a Spartan Strategy for a Ping-Pong Reaction Biochemistry 2005 44 11447 11457 1ZV1 16049008 Crystal structure of the dimerization domain of doublesex protein from D. melanogaster 2005-06-01 2005-08-09 Bayrer, J.R.,Zhang, W.,Weiss, M.A. Dimerization of doublesex is mediated by a cryptic ubiquitin-associated domain fold: implications for sex-specific gene regulation J.Biol.Chem. 2005 280 32989 32996 1YIQ 16061256 Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADHIIG from Pseudomonas putida HK5. Compariison to the other quinohemoprotein alcohol dehydrogenase ADHIIB found in the same microorganism. 2005-01-12 2005-08-16 Toyama, H.,Chen, Z.W.,Fukumoto, M.,Adachi, O.,Matsushita, K.,Mathews, F.S. Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADH-IIG from Pseudomonas putida HK5 J.Mol.Biol. 2005 352 91 104 2AHB 16040614 X-ray crystal structure of R46A,R161A mutant of Mycobacterium tuberculosis FabH 2005-07-27 2005-08-23 Brown, A.K.,Sridharan, S.,Kremer, L.,Lindenberg, S.,Dover, L.G.,Sacchettini, J.C.,Besra, G.S. Probing the Mechanism of the Mycobacterium tuberculosis {beta}-Ketoacyl-Acyl Carrier Protein Synthase III mtFabH: FACTORS INFLUENCING CATALYSIS AND SUBSTRATE SPECIFICITY J.Biol.Chem. 2005 280 32539 32547 2AJ9 16040614 X-ray crystal structure of W42A,R161A double mutant of Mycobacterium tuberculosis beta-ketoacyl-ACP synthase III 2005-08-01 2005-08-30 Brown, A.K.,Sridharan, S.,Kremer, L.,Lindenberg, S.,Dover, L.G.,Sacchettini, J.C.,Besra, G.S. Probing the Mechanism of the Mycobacterium tuberculosis beta-Ketoacyl-Acyl Carrier Protein Synthase III mtFabH: Factors Influencing Catalysis And Substrate Specificity. J.Biol.Chem. 2005 280 32539 32547 1SQX 15312779 Crystal Structure Analysis of Bovine Bc1 with Stigmatellin A 2004-03-21 2005-09-06 Esser, L.,Quinn, B.,Li, Y.F.,Zhang, M.,Elberry, M.,Yu, L.,Yu, C.A.,Xia, D. Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex. J.Mol.Biol. 2004 341 281 302 1XAW 16081103 crystal structure of the cytoplasmic distal C-terminal domain of occludin 2004-08-26 2005-09-06 Li, Y.,Fanning, A.S.,Anderson, J.M.,Lavie, A. Structure of the Conserved Cytoplasmic C-terminal Domain of Occludin: Identification of the ZO-1 Binding Surface. J.Mol.Biol. 2005 352 151 164 1YXA 16141197 Serpina3n, a murine orthologue of human antichymotrypsin 2005-02-20 2005-09-06 Horvath, A.J.,Irving, J.A.,Rossjohn, J.,Law, R.H.,Bottomley, S.P.,Quinsey, N.S.,Pike, R.N.,Coughlin, P.B.,Whisstock, J.C. The murine orthologue of human antichymotrypsin: a structural paradigm for clade A3 serpins. J.Biol.Chem. 2005 280 43168 43178 1TQ3 Higher resolution crystal structure of the third PDZ domain of post synaptic PSD-95 protein 2004-06-16 2005-09-20 Saro, D.,Vickrey, J.,Wawrzak, Z.,Kovari, L.,Spaller, M. Higher resolution crystal structure of the third PDZ domain of post synaptic PSD-95 protein. To be Published 0 0 0 0 1ZZ5 16037995 Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative 2005-06-13 2005-09-20 Zhao, F.,Zhao, Q.,Blount, K.F.,Han, Q.,Tor, Y.,Hermann, T. Molecular recognition of RNA by neomycin and a restricted neomycin derivative Angew.Chem.Int.Ed.Engl. 2005 44 5329 5334 2A8K 16060658 Structural and Mutational Studies of the Catalytic Domain of Colicin E5a tRNA-Specific Ribonuclease 2005-07-08 2005-09-20 Lin, Y.L.,Elias, Y.,Huang, R.H. Structural and mutational studies of the catalytic domain of colicin E5: A tRNA-specific ribonuclease Biochemistry 2005 44 10494 10500 2A19 16179258 PKR kinase domain- eIF2alpha- AMP-PNP complex. 2005-06-19 2005-09-27 Dar, A.C.,Dever, T.E.,Sicheri, F. Higher-Order Substrate Recognition of eIF2alpha by the RNA-Dependent Protein Kinase PKR. Cell(Cambridge,Mass.) 2005 122 887 900 2A1A 16179258 PKR kinase domain-eIF2alpha Complex 2005-06-19 2005-09-27 Dar, A.C.,Dever, T.E.,Sicheri, F. Higher-Order Substrate Recognition of eIF2alpha by the RNA-Dependent Protein Kinase PKR. Cell(Cambridge,Mass.) 2005 122 887 900 2A8N 16142903 Biochemical and Structural Studies of A-to-I Editing by tRNA:A34 Deaminases at the Wobble Position of Transfer RNA 2005-07-08 2005-09-27 Elias, Y.,Huang, R.H. Biochemical and Structural Studies of A-to-I Editing by tRNA:A34 Deaminases at the Wobble Position of Transfer RNA Biochemistry 2005 44 12057 12065 1YWA 16171383 0.9 A Structure of NP4 from Rhodnius Prolixus complexed with CO at pH 5.6 2005-02-17 2005-10-04 Maes, E.M.,Roberts, S.A.,Weichsel, A.,Montfort, W.R. Ultrahigh Resolution Structures of Nitrophorin 4: Heme Distortion in Ferrous CO and NO Complexes Biochemistry 2005 44 12690 12699 1YWB 16171383 0.9 A Structure of NP4 from Rhodnius Prolixus complexed with NO at pH 5.6 2005-02-17 2005-10-04 Maes, E.M.,Roberts, S.A.,Weichsel, A.,Montfort, W.R. Ultrahigh Resolution Structures of Nitrophorin 4: Heme Distortion in Ferrous CO and NO Complexes Biochemistry 2005 44 12690 12699 1YWC 16171383 Structure of the ferrous CO complex of NP4 from Rhodnius Prolixus at pH 7.0 2005-02-17 2005-10-04 Maes, E.M.,Roberts, S.A.,Weichsel, A.,Montfort, W.R. Ultrahigh Resolution Structures of Nitrophorin 4: Heme Distortion in Ferrous CO and NO Complexes Biochemistry 2005 44 12690 12699 2AK4 16186824 Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide 2005-08-03 2005-10-11 Tynan, F.E.,Burrows, S.R.,Buckle, A.M.,Clements, C.S.,Borg, N.A.,Miles, J.J.,Beddoe, T.,Whisstock, J.C.,Wilce, M.C.,Silins, S.L.,Burrows, J.M.,Kjer-Nielsen, L.,Kostenko, L.,Purcell, A.W.,McCluskey, J.,Rossjohn, J. T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide Nat.Immunol. 2005 6 1114 1122 1Z0M 16216577 the glycogen-binding domain of the AMP-activated protein kinase beta1 subunit 2005-03-02 2005-10-25 Polekhina, G.,Gupta, A.,van Denderen, B.J.,Feil, S.C.,Kemp, B.E.,Stapleton, D.,Parker, M.W. Structural Basis for Glycogen Recognition by AMP-Activated Protein Kinase. Structure 2005 13 1453 1462 1ZGN 16195232 Crystal Structure of the Glutathione Transferase Pi in Complex with Dinitrosyl-diglutathionyl Iron Complex 2005-04-21 2005-11-01 Cesareo, E.,Parker, L.J.,Pedersen, J.Z.,Nuccetelli, M.,Mazzetti, A.P.,Pastore, A.,Federici, G.,Caccuri, A.M.,Ricci, G.,Adams, J.J.,Parker, M.W.,Bello, M.L. Nitrosylation of human glutathione transferase P1-1 with dinitrosyl diglutathionyl iron complex in vitro and in vivo J.Biol.Chem. 2005 280 42172 42180 1YSL 16245942 Crystal structure of HMG-CoA synthase from Enterococcus faecalis with AcetoAcetyl-CoA ligand. 2005-02-08 2005-11-08 Steussy, C.N.,Vartia, A.A.,Burgner II, J.W.,Sutherlin, A.,Rodwell, V.W.,Stauffacher, C.V. X-ray Crystal Structures of HMG-CoA Synthase from Enterococcus faecalis and a Complex with Its Second Substrate/Inhibitor Acetoacetyl-CoA. Biochemistry 2005 44 14256 14267 1U6Z 16905100 Structure of an E. coli Exopolyphosphatase: Insight into the processive hydrolysis of polyphosphate and its regulation 2004-08-02 2005-12-06 Alvarado, J.,Ghosh, A.,Janovitz, T.,Jauregui, A.,Hasson, M.S.,Sanders, D.A. Origin of exopolyphosphatase processivity: Fusion of an ASKHA phosphotransferase and a cyclic nucleotide phosphodiesterase homolog. Structure 2006 14 1263 1272 2CW6 16330550 Crystal Structure of Human HMG-CoA Lyase: Insights into Catalysis and the Molecular Basis for Hydroxymethylglutaric Aciduria 2005-06-17 2005-12-06 Fu, Z.,Runquist, J.A.,Forouhar, F.,Hussain, M.,Hunt, J.F.,Miziorko, H.M.,Kim, J.-J.P. Crystal structure of human 3-hydroxy-3-methylglutaryl-CoA Lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria J.Biol.Chem. 2006 281 7526 7532 1YFH 15964013 wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine 2004-12-31 2005-12-13 Duguid, E.M.,Rice, P.A.,He, C. The structure of the human AGT protein bound to DNA and its implications for damage detection. J.Mol.Biol. 2005 350 657 666 2AB4 16300397 Dissecting the Roles of a Strictly Conserved Tyrosine in Substrate Recognition and Catalysis by Pseudouridine 55 Synthase 2005-07-14 2005-12-13 Phannachet, K.,Elias, Y.,Huang, R.H. Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase. Biochemistry 2005 44 15488 15494 2F8I 12820260 Human transthyretin (TTR) complexed with Benzoxazole 2005-12-02 2005-12-20 Razavi, H.,Palaninathan, S.K.,Powers, E.T.,Wiseman, R.L.,Purkey, H.E.,Mohamedmohaideen, N.N.,Deechongkit, S.,Chiang, K.P.,Dendle, M.T.,Sacchettini, J.C.,Kelly, J.W. Benzoxazoles as transthyretin amyloid fibril inhibitors: synthesis, evaluation, and mechanism of action Angew.Chem.Int.Ed.Engl. 2003 42 2758 2761 1YNO High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate 2005-01-24 2006-01-17 Bera, A.K.,Anderson, N.L.,Hasson, M.S. High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate; To be Published 0 0 0 0 2C12 16430210 Crystal Structure of Nitroalkane Oxidase in Complex with Spermine, a Competitive Inhibitor 2005-09-10 2006-02-01 Nagpal, A.,Valley, M.P.,Fitzpatrick, P.F.,Orville, A.M. Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover. Biochemistry 2006 45 1138 0 2FS3 17098191 Bacteriophage HK97 K169Y Head I 2006-01-20 2006-02-07 Gan, L.,Speir, J.A.,Conway, J.F.,Lander, G.,Cheng, N.,Firek, B.A.,Hendrix, R.W.,Duda, R.L.,Liljas, L.,Johnson, J.E. Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM. Structure 2006 14 1655 1665 2FPI 16481318 Crystal structure of pig GTP-specific succinyl-CoA synthetase from polyethylene glycol 2006-01-16 2006-02-21 Fraser, M.E.,Hayakawa, K.,Hume, M.S.,Ryan, D.G.,Brownie, E.R. Interactions of GTP with the ATP-grasp Domain of GTP-specific Succinyl-CoA Synthetase J.Biol.Chem. 2006 281 11058 11065 2CVX 16537479 Structures of Yeast Ribonucleotide Reductase I 2005-06-14 2006-03-07 Xu, H.,Faber, C.,Uchiki, T.,Fairman, J.W.,Racca, J.,Dealwis, C. Structures of eukaryotic ribonucleotide reductase I provide insights into dNTP regulation Proc.Natl.Acad.Sci.Usa 2006 103 4022 4027 1ZA7 16537626 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. 2005-04-05 2006-03-21 Speir, J.A.,Bothner, B.,Qu, C.,Willits, D.A.,Young, M.J.,Johnson, J.E. Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics. J.Virol. 2006 80 3582 3591 2AHA 16322566 Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8. 2005-07-27 2006-03-21 Cannon, M.B.,Remington, S.J. Re-engineering redox-sensitive green fluorescent protein for improved response rate. Protein Sci. 2006 15 45 57 2ESV 16474394 Structure of the HLA-E-VMAPRTLIL/KK50.4 TCR complex 2005-10-27 2006-03-21 Hoare, H.L.,Sullivan, L.C.,Pietra, G.,Clements, C.S.,Lee, E.J.,Ely, L.K.,Beddoe, T.,Falco, M.,Kjer-Nielsen, L.,Reid, H.H.,McCluskey, J.,Moretta, L.,Rossjohn, J.,Brooks, A.G. Structural basis for a major histocompatibility complex class Ib-restricted T cell response Nat.Immunol. 2006 7 256 264 2EYS 16505140 A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition 2005-11-09 2006-03-21 Kjer-Nielsen, L.,Borg, N.A.,Pellicci, D.G.,Beddoe, T.,Kostenko, L.,Clements, C.S.,Williamson, N.A.,Smyth, M.J.,Besra, G.S.,Reid, H.H.,Bharadwaj, M.,Godfrey, D.I.,Rossjohn, J.,McCluskey, J. A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition J.Exp.Med. 2006 203 661 673 2FKK 16554069 Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10 2006-01-04 2006-04-04 Leiman, P.G.,Shneider, M.M.,Mesyanzhinov, V.V.,Rossmann, M.G. Evolution of bacteriophage tails: structure of t4 gene product 10 J.Mol.Biol. 2006 358 912 921 2GDN 16870770 Crystal structure of the Mycobacterium tuberculosis beta-lactamase 2006-03-16 2006-04-18 Wang, F.,Cassidy, C.,Sacchettini, J.C. Crystal Structure and Activity Studies of the Mycobacterium tuberculosis {beta}-Lactamase Reveal Its Critical Role in Resistance to {beta}-Lactam Antibiotics. Antimicrob.Agents Chemother. 2006 50 2762 2771 2FTN 16946460 E. coli thymidylate synthase Y94F mutant 2006-01-24 2006-05-02 Roberts, S.A.,Hyatt, D.C.,Honts, J.E.,Changchien, L.,Maley, G.F.,Maley, F.,Montfort, W.R. Structure of the Y94F mutant of Escherichia coli thymidylate synthase. ACTA CRYSTALLOGR.,SECT.F 2006 62 840 843 2FTQ E. coli thymidylate synthase at 1.8 A resolution 2006-01-24 2006-05-02 Montfort, W.R.,Roberts, S.A. Subtle Conformational Differences between Escherichia coli Thymidylate Synthase and Specific Mutants of this Enzyme To be Published 0 0 0 0 2GP1 Bacteriophage HK97 Prohead II crystal structure 2006-04-15 2006-05-02 Gertsman, I.,Gan, L.,Wikoff, W.,Guttman, M.,Duda, R.L.,Hendrix, R.W.,Komives, E.A.,Johnson, J.E. Structure and Flexibility of Bacteriophage HK97 Pre-expanded State Prohead II To be Published 0 0 0 0 2B1V 16648639 Human estrogen receptor alpha ligand-binding domain in complex with OBCP-1M and a glucocorticoid receptor interacting protein 1 NR box II peptide 2005-09-16 2006-05-09 Hsieh, R.W.,Rajan, S.S.,Sharma, S.K.,Guo, Y.,Desombre, E.R.,Mrksich, M.,Greene, G.L. Identification of ligands with bicyclic scaffolds provides insights into mechanisms of estrogen receptor subtype selectivity. J.Biol.Chem. 2006 281 17909 17919 2FAI 16648639 Human Estrogen Receptor Alpha Ligand-Binding Domain In Complex With OBCP-2M and A Glucocorticoid Receptor Interacting Protein 1 NR Box II Peptide 2005-12-07 2006-05-09 Hsieh, R.W.,Rajan, S.S.,Sharma, S.K.,Guo, Y.,Desombre, E.R.,Mrksich, M.,Greene, G.L. Identification of ligands with bicyclic scaffolds provides insights into mechanisms of estrogen receptor subtype selectivity. J.Biol.Chem. 2006 281 17909 17919 2A2R 16597834 Crystal Structure of Glutathione Transferase Pi in complex with S-nitrosoglutathione 2005-06-23 2006-06-06 Tellez-Sanz, R.,Cesareo, E.,Nuccetelli, M.,Aguilera, A.M.,Baron, C.,Parker, L.J.,Adams, J.J.,Morton, C.J.,Lo Bello, M.,Parker, M.W.,Garcia-Fuentes, L. Calorimetric and structural studies of the nitric oxide carrier S-nitrosoglutathione bound to human glutathione transferase P1-1 Protein Sci. 2006 15 1093 1105 2A2S 16597834 Crystal Structure of Human Glutathione Transferase in complex with S-nitrosoglutathione in the absence of reducing agent 2005-06-23 2006-06-06 Tellez-Sanz, R.,Cesareo, E.,Nuccetelli, M.,Aguilera, A.M.,Baron, C.,Parker, L.J.,Adams, J.J.,Morton, C.J.,Lo Bello, M.,Parker, M.W.,Garcia-Fuentes, L. Calorimetric and structural studies of the nitric oxide carrier S-nitrosoglutathione bound to human glutathione transferase P1-1 Protein Sci. 2006 15 1093 1105 2A3F Crystal structure of nitrophorin 2 aqua complex 2005-06-24 2006-06-06 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus. To be Published 0 0 0 0 2ACP Crystal structure of nitrophorin 2 aqua complex 2005-07-19 2006-06-27 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published 0 0 0 0 2GE8 16775348 Structure of the C-terminal dimerization domain of infectious bronchitis virus nucleocapsid protein 2006-03-18 2006-06-27 Jayaram, H.,Fan, H.,Bowman, B.R.,Ooi, A.,Jayaram, J.,Collisson, E.W.,Lescar, J.,Prasad, B.V. X-ray structures of the N- and C-terminal domains of a coronavirus nucleocapsid protein: implications for nucleocapsid formation. J.Virol. 2006 80 6612 6620 2GEC 16775348 Structure of the N-terminal domain of avian infectious bronchitis virus nucleocapsid protein (strain Gray) in a novel dimeric arrangement 2006-03-19 2006-06-27 Jayaram, H.,Fan, H.,Bowman, B.R.,Ooi, A.,Jayaram, J.,Collisson, E.W.,Lescar, J.,Prasad, B.V. X-ray structures of the N- and C-terminal domains of a coronavirus nucleocapsid protein: implications for nucleocapsid formation. J.Virol. 2006 80 6612 6620 2A7P 19465768 Crystal Structure of the G81A mutant of the Active Chimera of (S)-Mandelate Dehydrogenase in complex with its substrate 3-indolelactate 2005-07-05 2006-07-11 Sukumar, N.,Dewanti, A.,Merli, A.,Rossi, G.L.,Mitra, B.,Mathews, F.S. Structures of the G81A mutant form of the active chimera of (S)-mandelate dehydrogenase and its complex with two of its substrates. Acta Crystallogr.,Sect.D 2009 65 543 552 2AH7 Crystal structure of nitrophorin 2 aqua complex 2005-07-27 2006-07-18 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published 0 0 0 0 2AL0 Crystal structure of nitrophorin 2 ferrous aqua complex 2005-08-04 2006-07-18 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published 0 0 0 0 2GIE 16675462 HincII bound to cognate DNA GTTAAC 2006-03-28 2006-07-18 Joshi, H.K.,Etzkorn, C.,Chatwell, L.,Bitinaite, J.,Horton, N.C. Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism. J.Biol.Chem. 2006 281 23852 23869 2GRV 16698034 Crystal Structure of LpqW 2006-04-25 2006-07-18 Marland, Z.,Beddoe, T.,Zaker-Tabrizi, L.,Lucet, I.S.,Brammananth, R.,Whisstock, J.C.,Wilce, M.C.,Coppel, R.L.,Crellin, P.K.,Rossjohn, J. Hijacking of a Substrate-binding Protein Scaffold for use in Mycobacterial Cell Wall Biosynthesis J.Mol.Biol. 2006 359 983 997 2GTL 16843898 Lumbricus Erythrocruorin at 3.5A resolution 2006-04-28 2006-07-18 Royer Jr., W.E.,Sharma, H.,Strand, K.,Knapp, J.E.,Bhyravbhatla, B. Lumbricus erythrocruorin at 3.5 a resolution: architecture of a megadalton respiratory complex. Structure 2006 14 1167 1177 2H4P 16810322 Crystal structure of wildtype MENT in the cleaved conformation 2006-05-24 2006-07-18 McGowan, S.,Buckle, A.M.,Irving, J.A.,Ong, P.C.,Bashtannyk-Puhalovich, T.A.,Kan, W.T.,Henderson, K.N.,Bulynko, Y.A.,Popova, E.Y.,Smith, A.I.,Bottomley, S.P.,Rossjohn, J.,Grigoryev, S.A.,Pike, R.N.,Whisstock, J.C. X-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation. Embo J. 2006 25 3144 3155 2DEA 16596389 Crystal Structure of the Aminopeptidase of Aeromonas proteolytica at pH 4.7 2006-02-10 2006-07-25 Desmarais, W.,Bienvenue, D.L.,Bzymek, K.P.,Petsko, G.A.,Ringe, D.,Holz, R.C. The high-resolution structures of the neutral and the low pH crystals of aminopeptidase from Aeromonas proteolytica. J.Biol.Inorg.Chem. 2006 11 398 408 2GBA 16819827 Reduced Cu(I) form at pH 4 of P52G mutant of amicyanin 2006-03-10 2006-08-01 Ma, J.K.,Carrell, C.J.,Mathews, F.S.,Davidson, V.L. Site-Directed Mutagenesis of Proline 52 To Glycine in Amicyanin Converts a True Electron Transfer Reaction into One that Is Conformationally Gated. Biochemistry 2006 45 8284 8293 2ALV 16250632 X-ray structural analysis of SARS coronavirus 3CL proteinase in complex with designed anti-viral inhibitors 2005-08-08 2006-08-08 Ghosh, A.K.,Xi, K.,Ratia, K.,Santarsiero, B.D.,Fu, W.,Harcourt, B.H.,Rota, P.A.,Baker, S.C.,Johnson, M.E.,Mesecar, A.D. Design and synthesis of peptidomimetic severe acute respiratory syndrome chymotrypsin-like protease inhibitors. J.Med.Chem. 2005 48 6767 6771 2DUT 16810322 Crystal structure of a M-loop deletion variant of MENT in the native conformation 2006-07-26 2006-08-08 McGowan, S.,Buckle, A.M.,Irving, J.A.,Ong, P.C.,Bashtannyk-Puhalovich, T.A.,Kan, W.T.,Henderson, K.N.,Bulynko, Y.A.,Popova, E.Y.,Smith, A.I.,Bottomley, S.P.,Rossjohn, J.,Grigoryev, S.A.,Pike, R.N.,Whisstock, J.C. X-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation Embo J. 2006 25 3144 3155 2GAG 16820168 Heteroteterameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution 2006-03-08 2006-08-08 Chen, Z.W.,Hassan-Abdulah, A.,Zhao, G.,Jorns, M.S.,Mathews, F.S. Heterotetrameric sarcosine oxidase: structure of a diflavin metalloenzyme at 1.85 a resolution. J.Mol.Biol. 2006 360 1000 1018 2H4L 16880541 Complex of PMM/PGM with ribose 1-phosphate 2006-05-24 2006-08-08 Regni, C.,Shackelford, G.S.,Beamer, L.J. Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor. Acta Crystallogr.,Sect.F 2006 62 722 726 2G7P 16846233 Structure of the Light Chain of Botulinum Neurotoxin Serotype A Bound to Small Molecule Inhibitors 2006-02-28 2006-08-15 Fu, Z.,Chen, S.,Baldwin, M.R.,Boldt, G.E.,Crawford, A.,Janda, K.D.,Barbieri, J.T.,Kim, J.J. Light chain of botulinum neurotoxin serotype A: structural resolution of a catalytic intermediate. Biochemistry 2006 45 8903 8911 2G7Q 16846233 Structure of the Light Chain of Botulinum Neurotoxin Serotype A Bound to Small Molecule Inhibitors 2006-02-28 2006-08-15 Fu, Z.,Chen, S.,Baldwin, M.R.,Boldt, G.E.,Crawford, A.,Janda, K.D.,Barbieri, J.T.,Kim, J.J. Light chain of botulinum neurotoxin serotype A: structural resolution of a catalytic intermediate. Biochemistry 2006 45 8903 8911 2AT5 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Containing Fe(III) Deuteroporphyrin IX Complexed With Nitric Oxide at pH 5.6 2005-08-24 2006-08-22 Amoia, A.M.,Montfort, W.R. Heme distortion in nitrophorin 4: high resolution structures of mutated positions L123V and L133V and heme altered proteins To be Published 0 0 0 0 2AT6 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Containing Fe(III) Deuteroporphyrin IX Complexed With Water at pH 5.6 2005-08-24 2006-08-22 Amoia, A.M.,Montfort, W.R. Heme distortion in nitrophorin 4: high resolution structures of mutated positions L123V and L133V and heme altered proteins To be Published 0 0 0 0 2AT8 0.96 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Containing Fe(III) 2,4 Dimethyl Deuteroporphyrin IX Complexed With Nitric Oxide at pH 5.6 2005-08-24 2006-08-22 Amoia, A.M.,Montfort, W.R. Heme distortion in nitrophorin 4: high resolution structures of mutated positions L123V and L133V and heme altered proteins To be Published 0 0 0 0 2H5Q 16893165 Crystal structure of mCherry 2006-05-26 2006-08-22 Shu, X.,Shaner, N.C.,Yarbrough, C.A.,Tsien, R.Y.,Remington, S.J. Novel Chromophores and Buried Charges Control Color in mFruits Biochemistry 2006 45 9639 9647 2B8H 16929094 A/NWS/whale/Maine/1/84 (H1N9) reassortant influenza virus neuraminidase 2005-10-07 2006-09-05 Smith, B.J.,Huyton, T.,Joosten, R.P.,McKimm-Breschkin, J.L.,Zhang, J.G.,Luo, C.S.,Lou, M.Z.,Labrou, N.E.,Garrett, T.P. Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding. Acta Crystallogr.,Sect.D 2006 62 947 952 2H4J 16905097 Sir2-deacetylated peptide (from enzymatic turnover in crystal) 2006-05-24 2006-09-05 Hoff, K.G.,Avalos, J.L.,Sens, K.,Wolberger, C. Insights into the Sirtuin Mechanism from Ternary Complexes Containing NAD(+) and Acetylated Peptide. Structure 2006 14 1231 1240 2D1K 17292833 Ternary complex of the WH2 domain of mim with actin-dnase I 2005-08-26 2006-09-12 Lee, S.H.,Kerff, F.,Chereau, D.,Ferron, F.,Klug, A.,Dominguez, R. Structural basis for the actin-binding function of missing-in-metastasis Structure 2007 15 145 155 2B1Z 17949766 Human estrogen receptor alpha ligand-binding domain in complex with 17methyl-17alpha-dihydroequilenin and a glucoc interacting protein 1 NR box II peptide 2005-09-16 2006-09-19 Hsieh, R.W.,Rajan, S.S.,Sharma, S.K.,Greene, G.L. Molecular characterization of a B-ring unsaturated estrogen: implications for conjugated equine estrogen components of premarin. Steroids 2008 73 59 68 2B23 18344977 Human estrogen receptor alpha ligand-binding domain and a glucocorticoid receptor-interacting protein 1 NR box II peptide 2005-09-16 2006-09-19 Nettles, K.W.,Bruning, J.B.,Gil, G.,Nowak, J.,Sharma, S.K.,Hahm, J.B.,Kulp, K.,Hochberg, R.B.,Zhou, H.,Katzenellenbogen, J.A.,Katzenellenbogen, B.S.,Kim, Y.,Joachmiak, A.,Greene, G.L. NFkappaB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses Nat.Chem.Biol. 2008 4 241 247 2HWL 16962697 Crystal structure of thrombin in complex with fibrinogen gamma' peptide 2006-08-01 2006-09-19 Pineda, A.O.,Chen, Z.W.,Marino, F.,Mathews, F.S.,Mosesson, M.W.,Di Cera, E. Crystal structure of thrombin in complex with fibrinogen gamma' peptide. Biophys.Chem. 2007 125 556 559 2EU7 Crystal structure of D1A mutant of nitrophorin 2 complexed with ammonia 2005-10-28 2006-10-10 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published 0 0 0 0 2GMH 17050691 Structure of Porcine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase in Complexed with Ubiquinone 2006-04-06 2006-10-17 Zhang, J.,Frerman, F.E.,Kim, J.J. Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool. Proc.Natl.Acad.Sci.Usa 2006 103 16212 16217 2G54 17051221 Crystal structure of Zn-bound human insulin-degrading enzyme in complex with insulin B chain 2006-02-22 2006-10-24 Shen, Y.,Joachimiak, A.,Rosner, M.R.,Tang, W.J. Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature 2006 443 870 874 2IBB 17077139 Crystal Structure of the First and Second FNIII Domains of Ihog 2006-09-11 2006-10-24 McLellan, J.S.,Yao, S.,Zheng, X.,Geisbrecht, B.V.,Ghirlando, R.,Beachy, P.A.,Leahy, D.J. Structure of a heparin-dependent complex of Hedgehog and Ihog. Proc.Natl.Acad.Sci.Usa 2006 103 17208 17213 2HG0 16987985 Structure of the West Nile Virus envelope glycoprotein 2006-06-26 2006-11-07 Nybakken, G.E.,Nelson, C.A.,Chen, B.R.,Diamond, M.S.,Fremont, D.H. Crystal structure of the West Nile virus envelope glycoprotein. J.Virol. 2006 80 11467 11474 2G33 16943288 Human Hepatitis B Virus T=4 capsid, strain adyw 2006-02-17 2006-11-14 Bourne, C.R.,Finn, M.G.,Zlotnick, A. Global Structural Changes in Hepatitis B Virus Capsids Induced by the Assembly Effector HAP1. J.Virol. 2006 80 11055 11061 2NQO 17107958 Crystal Structure of Helicobacter pylori gamma-Glutamyltranspeptidase 2006-10-31 2006-11-21 Boanca, G.,Sand, A.,Okada, T.,Suzuki, H.,Kumagai, H.,Fukuyama, K.,Barycki, J.J. Autoprocessing of Helicobacter pylori gamma-glutamyltranspeptidase leads to the formation of a threonine-threonine catalytic dyad. J.Biol.Chem. 2007 282 534 541 2J45 17139088 Water structure of T. Aquaticus Ffh NG Domain At 1.1A Resolution 2006-08-24 2006-11-30 Ramirez, U.D.,Freymann, D.M. Analysis of Protein Hydration in Ultra-High Resolution Structures of the Srp Gtpase Ffh Acta Crystallogr.,Sect.D 2006 62 1520 0 2IFQ 17260951 Crystal structure of S-nitroso thioredoxin 2006-09-21 2006-12-05 Weichsel, A.,Brailey, J.L.,Montfort, W.R. Buried s-nitrosocysteine revealed in crystal structures of human thioredoxin. Biochemistry 2007 46 1219 1227 2FN3 High resolution structure of s26a mutant of benzoylformate decarboxylase from pseudomonas putida complexed with thiamine thiazolone diphosphate 2006-01-10 2006-12-19 Bera, A.K.,Hasson, M.S. High resolution structure of benzoylformate decarboxylase active site mutant s26a from pseudomonas putida complexed with thiamine thiazolone diphosphate To be Published 0 0 0 0 2FWN 17367138 Phosphorylation of an active site serine in a ThDP-dependent enzyme by phosphonate inactivation 2006-02-02 2006-12-19 Bera, A.K.,Polovnikova, L.S.,Roestamadji, J.,Widlanski, T.S.,Kenyon, G.L.,McLeish, M.J.,Hasson, M.S. Mechanism-based inactivation of benzoylformate decarboxylase, a thiamin diphosphate-dependent enzyme J.Am.Chem.Soc. 2007 129 4120 4121 2IAJ 17056061 Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with ATP 2006-09-08 2006-12-19 Das, K.,Sarafianos, S.G.,Clark, A.D.,Boyer, P.L.,Hughes, S.H.,Arnold, E. Crystal Structures of Clinically Relevant Lys103Asn/Tyr181Cys Double Mutant HIV-1 Reverse Transcriptase in Complexes with ATP and Non-nucleoside Inhibitor HBY 097. J.Mol.Biol. 2007 365 77 89 2IC3 17056061 Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with Nonnucleoside Inhibitor HBY 097 2006-09-12 2006-12-19 Das, K.,Sarafianos, S.G.,Clark, A.D.,Boyer, P.L.,Hughes, S.H.,Arnold, E. Crystal Structures of Clinically Relevant Lys103Asn/Tyr181Cys Double Mutant HIV-1 Reverse Transcriptase in Complexes with ATP and Non-nucleoside Inhibitor HBY 097. J.Mol.Biol. 2007 365 77 89 2HQK 16859491 Crystal structure of a monomeric cyan fluorescent protein derived from Clavularia 2006-07-18 2007-01-02 Ai, H.W.,Henderson, J.N.,Remington, S.J.,Campbell, R.E. Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging. Biochem.J. 2006 400 531 540 2IYL 17186523 Structure of an FtsY:GDP complex 2006-07-18 2007-01-02 Gawronski-Salerno, J.,Coon 5th., J.S.,Focia, P.J.,Freymann, D.M. X-ray structure of the T. aquaticus FtsY:GDP complex suggests functional roles for the C-terminal helix of the SRP GTPases. Proteins 2007 66 984 995 2G44 Human Estrogen Receptor Alpha Ligand-Binding Domain In Complex With OBCP-1M-G and A Glucocorticoid Receptor Interacting Protein 1 NR Box II Peptide 2006-02-21 2007-01-09 Hsieh, R.W. Discovery and characterization of novel estrogen receptor agonist ligands and development of biochips for nuclear receptor drug discovery Thesis 2006 0 0 0 2FKL 17239395 Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain (Residues 126- 189 of APP) 2006-01-04 2007-01-16 Kong, G.K.,Adams, J.J.,Harris, H.H.,Boas, J.F.,Curtain, C.C.,Galatis, D.,Masters, C.L.,Barnham, K.J.,McKinstry, W.J.,Cappai, R.,Parker, M.W. Structural Studies of the Alzheimer's Amyloid Precursor Protein Copper-binding Domain Reveal How it Binds Copper Ions J.Mol.Biol. 2007 367 148 161 2FMA 17909280 Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'small unit cell' form, atomic resolution 2006-01-08 2007-01-16 Kong, G.K.,Adams, J.J.,Cappai, R.,Parker, M.W. Structure of Alzheimer's disease amyloid precursor protein copper-binding domain at atomic resolution. Acta Crystallogr.,Sect.F 2007 63 819 824 2J55 17211075 X-ray reduced Paraccocus denitrificans methylamine dehydrogenase O- quinone in complex with amicyanin. 2006-09-12 2007-01-23 Pearson, A.R.,Pahl, R.,Kovaleva, E.G.,Davidson, V.L.,Wilmot, C.M. Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry. J.Synchrotron Radiat. 2007 14 92 0 2J56 17211075 X-ray reduced Paraccocus denitrificans methylamine dehydrogenase N- semiquinone in complex with amicyanin. 2006-09-12 2007-01-23 Pearson, A.R.,Pahl, R.,Kovaleva, E.G.,Davidson, V.L.,Wilmot, C.M. Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry. J.Synchrotron Radiat. 2007 14 92 0 2J57 17211075 X-ray reduced Paraccocus denitrificans methylamine dehydrogenase N- quinol in complex with amicyanin. 2006-09-12 2007-01-23 Pearson, A.R.,Pahl, R.,Kovaleva, E.G.,Davidson, V.L.,Wilmot, C.M. Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry. J.Synchrotron Radiat. 2007 14 92 0 2OGV 17292918 Crystal Structure of the Autoinhibited Human c-Fms Kinase Domain 2007-01-09 2007-02-06 Walter, M.,Lucet, I.S.,Patel, O.,Broughton, S.E.,Bamert, R.,Williams, N.K.,Fantino, E.,Wilks, A.F.,Rossjohn, J. The 2.7 A crystal structure of the autoinhibited human c-Fms kinase domain. J.Mol.Biol. 2007 367 839 847 2H9E 17173931 Crystal Structure of FXa/selectide/NAPC2 ternary complex 2006-06-09 2007-02-13 Murakami, M.T.,Rios-Steiner, J.,Weaver, S.E.,Tulinsky, A.,Geiger, J.H.,Arni, R.K. Intermolecular Interactions and Characterization of the Novel Factor Xa Exosite Involved in Macromolecular Recognition and Inhibition: Crystal Structure of Human Gla-domainless Factor Xa Complexed with the Anticoagulant Protein NAPc2 from the Hematophagous Nematode Ancylostoma caninum. J.Mol.Biol. 2007 366 602 610 2OR3 18570440 Pre-oxidation Complex of Human DJ-1 2007-02-01 2007-02-13 Witt, A.C.,Lakshminarasimhan, M.,Remington, B.C.,Hasim, S.,Pozharski, E.,Wilson, M.A. Cysteine pKa depression by a protonated glutamic acid in human DJ-1. Biochemistry 2008 47 7430 7440 2IC6 17222867 The Coiled-coil Domain (residues 1-75) Structure of the Sin Nombre Virus Nucleocapsid Protein 2006-09-12 2007-02-27 Boudko, S.P.,Kuhn, R.J.,Rossmann, M.G. The Coiled-coil Domain Structure of the Sin Nombre Virus Nucleocapsid Protein. J.Mol.Biol. 2007 366 1538 1544 2IC9 17222867 The Coiled-coil Domain (residues 1-93) Structure of the Sin Nombre Virus Nucleocapsid Protein 2006-09-12 2007-02-27 Boudko, S.P.,Kuhn, R.J.,Rossmann, M.G. The Coiled-coil Domain Structure of the Sin Nombre Virus Nucleocapsid Protein. J.Mol.Biol. 2007 366 1538 1544 2G5O Human estrogen receptor alpha ligand-binding domain in complex with 2-(but-1-enyl)-17beta-estradiol and a glucocorticoid receptor interacting protein 1 NR BOX II Peptide 2006-02-23 2007-03-06 Hsieh, R.W.,Greene, G.L. Human estrogen receptor alpha ligand-binding domain in complex with 2-(but-1-enyl)-17beta-estradiol and a glucocorticoid receptor interacting protein 1 NR BOX II Peptide To be Published 0 0 0 0 2ONO 17327228 Arg475Gln Mutant of Mitochondrial Aldehyde Dehydrogenase, apo form, pseudo-merohedrally twinned 2007-01-24 2007-03-06 Larson, H.N.,Zhou, J.,Chen, Z.,Stamler, J.S.,Weiner, H.,Hurley, T.D. Structural and functional consequences of coenzyme binding to the inactive asian variant of mitochondrial aldehyde dehydrogenase: roles of residues 475 and 487. J.Biol.Chem. 2007 282 12940 12950 2G7N Structure of the Light Chain of Botulinum Neurotoxin Serotype A Bound to small Molecule Inhibitors 2006-02-28 2007-03-13 Fu, Z.,Baldwin, M.R.,Boldt, G.E.,Crawford, A.,Janda, K.D.,Barbieri, J.T.,Kim, J.-J.P. Structure of the Light Chain of Botulinum Neurotoxin Serotype A bound to Small Molecule Inhibitors To be Published 0 0 0 0 2GTF Crystal structure of nitrophorin 2 complex with pyrimidine 2006-04-27 2007-03-13 Weichsel, A.,Berry, R.E.,Walker, F.A.,Montfort, W.R. Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published 0 0 0 0 2IDQ 17295442 Structure of M98A mutant of amicyanin, Cu(II) 2006-09-15 2007-03-13 Carrell, C.J.,Ma, J.K.,Antholine, W.E.,Hosler, J.P.,Mathews, F.S.,Davidson, V.L. Generation of Novel Copper Sites by Mutation of the Axial Ligand of Amicyanin. Atomic Resolution Structures and Spectroscopic Properties Biochemistry 2007 46 1900 1912 2IDS 17295442 Structure of M98A mutant of amicyanin, Cu(I) 2006-09-15 2007-03-13 Carrell, C.J.,Ma, J.K.,Antholine, W.E.,Hosler, J.P.,Mathews, F.S.,Davidson, V.L. Generation of Novel Copper Sites by Mutation of the Axial Ligand of Amicyanin. Atomic Resolution Structures and Spectroscopic Properties Biochemistry 2007 46 1900 1912 2IDU 17295442 Structure of M98Q mutant of amicyanin, Cu(I) 2006-09-15 2007-03-13 Carrell, C.J.,Ma, J.K.,Antholine, W.E.,Hosler, J.P.,Mathews, F.S.,Davidson, V.L. Generation of Novel Copper Sites by Mutation of the Axial Ligand of Amicyanin. Atomic Resolution Structures and Spectroscopic Properties Biochemistry 2007 46 1900 1912 2P0F 17339315 ArhGAP9 PH domain in complex with Ins(1,3,5)P3 2007-02-28 2007-03-27 Ceccarelli, D.F.,Blasutig, I.M.,Goudreault, M.,Li, Z.,Ruston, J.,Pawson, T.,Sicheri, F. Non-canonical Interaction of Phosphoinositides with Pleckstrin Homology Domains of Tiam1 and ArhGAP9. J.Biol.Chem. 2007 282 13864 13874 2OTE 17420458 Crystal structure of a monomeric cyan fluorescent protein in the photobleached state 2007-02-07 2007-04-03 Henderson, J.N.,Ai, H.W.,Campbell, R.E.,Remington, S.J. Structural basis for reversible photobleaching of a green fluorescent protein homologue. Proc.Natl.Acad.Sci.Usa 2007 104 6672 6677 2P1F Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase) 2007-03-05 2007-04-03 Liu, Y.,Tang, H.L.,Pai, E.F. Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase) TO BE PUBLISHED 0 0 0 0 2OCV 17428793 Structural basis of Na+ activation mimicry in murine thrombin 2006-12-21 2007-04-10 Marino, F.,Chen, Z.W.,Ergenekan, C.E.,Bush-Pelc, L.A.,Mathews, F.S.,Di Cera, E. Structural basis of na+ activation mimicry in murine thrombin. J.Biol.Chem. 2007 282 16355 16361 2OD3 17428793 Human thrombin chimera with human residues 184a, 186, 186a, 186b, 186c and 222 replaced by murine thrombin equivalents. 2006-12-21 2007-04-10 Marino, F.,Chen, Z.W.,Ergenekan, C.E.,Bush-Pelc, L.A.,Mathews, F.S.,Di Cera, E. Structural basis of na+ activation mimicry in murine thrombin. J.Biol.Chem. 2007 282 16355 16361 2ID4 17426142 The 1.9 A structure of Kex2 in complex with an Ac-R-E-R-K-chloromethyl ketone inhibitor. 2006-09-14 2007-05-01 Wheatley, J.L.,Holyoak, T. Differential P1 arginine and lysine recognition in the prototypical proprotein convertase Kex2. Proc.Natl.Acad.Sci.Usa 2007 104 6626 6631 2NX0 17488722 Ferrous nitrosyl blackfin tuna myoglobin 2006-11-16 2007-05-08 Schreiter, E.R.,Rodriguez, M.M.,Weichsel, A.,Montfort, W.R.,Bonaventura, J. S-nitrosylation-induced conformational change in blackfin tuna myoglobin. J.Biol.Chem. 2007 282 19773 19780 2P8O 17469803 Crystal Structure of a Benzohydroxamic Acid/Vanadate complex bound to chymotrypsin A 2007-03-22 2007-05-08 Moulin, A.,Bell, J.H.,Pratt, R.F.,Ringe, D. Inhibition of chymotrypsin by a complex of ortho-vanadate and benzohydroxamic Acid: structure of the inert complex and its mechanistic interpretation. Biochemistry 2007 46 5982 5990 2DPD Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site 2006-05-09 2007-05-15 Vivian, J.P.,Wilce, J.,Wilce, M.C.J. Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site to be published 0 0 0 0 2OLR 17475535 Crystal structure of Escherichia coli phosphoenolpyruvate carboxykinase complexed with carbon dioxide, Mg2+, ATP 2007-01-19 2007-06-12 Cotelesage, J.J.,Puttick, J.,Goldie, H.,Rajabi, B.,Novakovski, B.,Delbaere, L.T. How does an enzyme recognize CO2? Int.J.Biochem.Cell Biol. 2007 39 1204 1210 2PZV 16602823 Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas Putida (pksi) with bound Phenol 2007-05-18 2007-06-12 Kraut, D.A.,Sigala, P.A.,Pybus, B.,Liu, C.W.,Ringe, D.,Petsko, G.A.,Herschlag, D. Testing Electrostatic complementarity in Enzyme Catalysis: Hydrogen Bonding in the Ketosteroid Isomerase Oxyanion Hole PLoS Biol. 2006 4 501 519 2O93 18462673 Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element 2006-12-13 2007-06-19 Bates, D.L.,Barthel, K.K.,Wu, Y.,Kalhor, R.,Stroud, J.C.,Giffin, M.J.,Chen, L. Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element Structure 2008 16 684 694 2PEE 17557112 Crystal Structure of a Thermophilic Serpin, Tengpin, in the Native State 2007-04-02 2007-06-19 Zhang, Q.,Buckle, A.M.,Law, R.H.,Pearce, M.C.,Cabrita, L.D.,Lloyd, G.J.,Irving, J.A.,Smith, A.I.,Ruzyla, K.,Rossjohn, J.,Bottomley, S.P.,Whisstock, J.C. The N terminus of the serpin, tengpin, functions to trap the metastable native state. Embo Rep. 2007 8 658 663 2PEF 17557112 Crystal Structure of a Thermophilic Serpin, Tengpin, in the Latent State 2007-04-03 2007-06-19 Zhang, Q.,Buckle, A.M.,Law, R.H.,Pearce, M.C.,Cabrita, L.D.,Lloyd, G.J.,Irving, J.A.,Smith, A.I.,Ruzyla, K.,Rossjohn, J.,Bottomley, S.P.,Whisstock, J.C. The N terminus of the serpin, tengpin, functions to trap the metastable native state. Embo Rep. 2007 8 658 663 2JE0 17567741 Crystal Structure of pp32 2007-01-12 2007-06-26 Huyton, T.,Wolberger, C. The Crystal Structure of the Tumor Suppressor Protein Pp32 (Anp32A): Structural Insights Into Anp32 Family of Proteins. Protein Sci. 2007 16 1308 0 2JE1 17567741 The crystal Structure of the tumor supressor protein pp32 (Anp32a) :structural insights into the Anp32 family of proteins 2007-01-12 2007-06-26 Huyton, T.,Wolberger, C. The Crystal Structure of the Tumor Suppressor Protein Pp32 (Anp32A): Structural Insights Into Anp32 Family of Proteins. Protein Sci. 2007 16 1308 0 2EG7 17550785 The crystal structure of E. coli dihydroorotase complexed with HDDP 2007-02-28 2007-07-03 Lee, M.,Chan, C.W.,Graham, S.C.,Christopherson, R.I.,Guss, J.M.,Maher, M.J. Structures of Ligand-free and Inhibitor Complexes of Dihydroorotase from Escherichia coli: Implications for Loop Movement in Inhibitor Design J.Mol.Biol. 2007 370 812 825 2DUE 17918959 crystal structure of a green fluorescent protein variant S65T/H148D at pH 10 2006-07-23 2007-07-10 Shu, X.,Kallio, K.,Shi, X.,Abbyad, P.,Kanchanawong, P.,Childs, W.,Boxer, S.G.,Remington, S.J. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 2007 46 12005 12013 2DUF 17918959 crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6 2006-07-23 2007-07-10 Shu, X.,Kallio, K.,Shi, X.,Abbyad, P.,Kanchanawong, P.,Childs, W.,Boxer, S.G.,Remington, S.J. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 2007 46 12005 12013 2DUI 17918959 crystal structure of a green fluorescent protein variant H148D at pH 9 2006-07-23 2007-07-10 Shu, X.,Kallio, K.,Shi, X.,Abbyad, P.,Kanchanawong, P.,Childs, W.,Boxer, S.G.,Remington, S.J. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 2007 46 12005 12013 2OOL 17640891 Crystal structure of the chromophore-binding domain of an unusual bacteriophytochrome RpBphP3 from R. palustris 2007-01-25 2007-07-10 Yang, X.,Stojkovic, E.A.,Kuk, J.,Moffat, K. Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc.Natl.Acad.Sci.Usa 2007 104 12571 12576 2PUX 17606903 Crystal structure of murine thrombin in complex with the extracellular fragment of murine PAR3 2007-05-09 2007-07-10 Bah, A.,Chen, Z.,Bush-Pelc, L.A.,Mathews, F.S.,Di Cera, E. Crystal structures of murine thrombin in complex with the extracellular fragments of murine protease-activated receptors PAR3 and PAR4. Proc.Natl.Acad.Sci.Usa 2007 104 11603 11608 2PGB 17636263 Inhibitor-free human thrombin mutant C191A-C220A 2007-04-09 2007-07-17 Bush-Pelc, L.A.,Marino, F.,Chen, Z.,Pineda, A.O.,Mathews, F.S.,Di Cera, E. Important role of the cys-191 cys-220 disulfide bond in thrombin function and allostery J.Biol.Chem. 2007 282 27165 27170 2PGQ 17636263 Human thrombin mutant C191A-C220A in complex with the inhibitor PPACK 2007-04-10 2007-07-17 Bush-Pelc, L.A.,Marino, F.,Chen, Z.,Pineda, A.O.,Mathews, F.S.,Di Cera, E. Important role of the cys-191 cys-220 disulfide bond in thrombin function and allostery J.Biol.Chem. 2007 282 27165 27170 2O6G 17574024 Crystal structure of IRF-3 bound to the interferon-b enhancer 2006-12-07 2007-07-24 Panne, D.,Maniatis, T.,Harrison, S.C. An Atomic Model of the Interferon-beta Enhanceosome. Cell(Cambridge,Mass.) 2007 129 1111 1123 2O4U 17654552 Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase 2006-12-04 2007-07-31 Carbone, V.,Endo, S.,Sumii, R.,Chung, R.P.,Matsunaga, T.,Hara, A.,El-Kabbani, O. Structures of dimeric dihydrodiol dehydrogenase apoenzyme and inhibitor complex: probing the subunit interface with site-directed mutagenesis. Proteins 2008 70 176 187 2OLN 17697998 NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution 2007-01-19 2007-07-31 Carrell, C.J.,Bruckner, R.C.,Venci, D.,Zhao, G.,Jorns, M.S.,Mathews, F.S. NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: structures of closed and open forms at 1.15 and 1.90 A resolution Structure 2007 15 928 941 2OLO 17697998 NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: open form at 1.9A resolution 2007-01-19 2007-07-31 Carrell, C.J.,Bruckner, R.C.,Venci, D.,Zhao, G.,Jorns, M.S.,Mathews, F.S. NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: structures of closed and open forms at 1.15 and 1.90 A resolution Structure 2007 15 928 941 2HXS Crystal Structure of Rab28A GTPase in the Inactive (GDP-3'P-Bound) Form 2006-08-03 2007-08-07 Lee, S.H.,Li, Y.,Dominguez, R. The Crystal Structure of Rab28 GTPase in Active and Inactive Forms To be Published 0 0 0 0 2PNH 17588514 Escherichia coli PriB E39A variant 2007-04-24 2007-08-07 Lopper, M.,Boonsombat, R.,Sandler, S.J.,Keck, J.L. A hand-off mechanism for primosome assembly in replication restart. Mol.Cell 2007 26 781 793 2PR5 17764689 Structural Basis for Light-dependent Signaling in the Dimeric LOV Photosensor YtvA (Dark Structure) 2007-05-03 2007-08-07 Moglich, A.,Moffat, K. Structural Basis for Light-dependent Signaling in the Dimeric LOV Domain of the Photosensor YtvA. J.Mol.Biol. 2007 373 112 126 2PR6 17764689 Structural Basis for Light-dependent Signaling in the Dimeric LOV Photosensor YtvA (Light Structure) 2007-05-03 2007-08-07 Moglich, A.,Moffat, K. Structural Basis for Light-dependent Signaling in the Dimeric LOV Domain of the Photosensor YtvA. J.Mol.Biol. 2007 373 112 126 2IMQ Crystal structure of ferrous cimex nitrophorin 2006-10-04 2007-08-21 Weichsel, A.,Badgandi, H.,Montfort, W.R. Crystallographic and spectroscopic characterization of ferrous complexes of cimex nitrophorin, a heme-thiolate protein from the bedbug To be Published 0 0 0 0 2NNW 17617422 Alternative conformations of Nop56/58-fibrillarin complex and implication for induced-fit assenly of box C/D RNPs 2006-10-24 2007-08-21 Oruganti, S.,Zhang, Y.,Li, H.,Robinson, H.,Terns, M.P.,Terns, R.M.,Yang, W.,Li, H. Alternative Conformations of the Archaeal Nop56/58-Fibrillarin Complex Imply Flexibility in Box C/D RNPs. J.Mol.Biol. 2007 371 1141 1150 2QF1 17685635 Rat cytosolic PEPCK in complex with oxaloacetic acid. 2007-06-26 2007-08-21 Sullivan, S.M.,Holyoak, T. Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid. Biochemistry 2007 46 10078 10088 2J9J 17869270 Atomic-resolution Crystal Structure of Chemically-Synthesized HIV-1 Protease Complexed with Inhibitor JG-365 2006-11-11 2007-08-28 Johnson, E.C.B.,Malito, E.,Shen, Y.,Pentelute, B.,Rich, D.,Florian, J.,Tang, W.J.,Kent, S.B.H. Insights from Atomic-Resolution X-Ray Structures of Chemically Synthesized HIV-1 Protease in Complex with Inhibitors. J.Mol.Biol. 2007 373 573 0 2J9K 17869270 Atomic-resolution Crystal Structure of Chemically-Synthesized HIV-1 Protease Complexed with Inhibitor MVT-101 2006-11-11 2007-08-28 Johnson, E.C.B.,Malito, E.,Shen, Y.,Pentelute, B.,Rich, D.,Florian, J.,Tang, W.J.,Kent, S.B.H. Insights from Atomic-Resolution X-Ray Structures of Chemically Synthesized HIV-1 Protease in Complex with Inhibitors. J.Mol.Biol. 2007 373 573 0 2JE4 17705484 Atomic-resolution crystal structure of chemically-synthesized HIV-1 protease in complex with JG-365 2007-01-15 2007-08-28 Johnson, E.C.B.,Malito, E.,Shen, Y.,Rich, D.,Tang, W.J.,Kent, S.B. Modular Total Chemical Synthesis of a Human Immunodeficiency Virus Type 1 Protease. J.Am.Chem.Soc. 2007 129 11480 0 2P49 17888451 Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.4A resolution: native mono_1 crystal form 2007-03-11 2007-08-28 Koide, A.,Tereshko, V.,Uysal, S.,Margalef, K.,Kossiakoff, A.A.,Koide, S. Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope. J.Mol.Biol. 2007 373 941 953 2QF2 17685635 Rat cytosolic PEPCK in complex with oxaloacetic acid and GDP. 2007-06-26 2007-08-28 Sullivan, S.M.,Holyoak, T. Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid. Biochemistry 2007 46 10078 10088 2QK8 17696333 Crystal structure of the anthrax drug target, Bacillus anthracis dihydrofolate reductase 2007-07-10 2007-08-28 Bennett, B.C.,Xu, H.,Simmerman, R.F.,Lee, R.E.,Dealwis, C.G. Crystal structure of the anthrax drug target, Bacillus anthracis dihydrofolate reductase. J.Med.Chem. 2007 50 4374 4381 2Q7W 17713924 Structural Studies Reveals the Inactivation of E. coli L-aspartate aminotransferase (S)-4,5-amino-dihydro-2-thiophenecarboxylic acid (SADTA) via two mechanisms at pH 6.0 2007-06-07 2007-09-04 Liu, D.,Pozharski, E.,Lepore, B.W.,Fu, M.,Silverman, R.B.,Petsko, G.A.,Ringe, D. Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals ""A Tale of Two Mechanisms"". Biochemistry 2007 46 10517 10527 2QBT 17713924 Structural Studies Reveal The Inactivation of E. coli L-aspartate aminotransferase by (S)-4,5-amino-dihydro-2-thiophenecarboxylic acid (SADTA) via Two Mechanisms (at pH 8.0) 2007-06-18 2007-09-04 Liu, D.,Pozharski, E.,Lepore, B.W.,Fu, M.,Silverman, R.B.,Petsko, G.A.,Ringe, D. Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals ""A Tale of Two Mechanisms"". Biochemistry 2007 46 10517 10527 2IIR Acetate kinase from a hypothermophile Thermotoga maritima 2006-09-28 2007-09-11 Mukhopadhyay, S.,Hasson, M.S.,Sanders, D.A. Acetate kinase from a hypothermophile Thermotoga maritima To be Published 0 0 0 0 2ID9 18801331 1.85 A Structure of T87I/Y106W Phosphono-CheY 2006-09-14 2007-09-25 McAdams, K.,Casper, E.S.,Matthew Haas, R.,Santarsiero, B.D.,Eggler, A.L.,Mesecar, A.,Halkides, C.J. The structures of T87I phosphono-CheY and T87I/Y106W phosphono-CheY help to explain their binding affinities to the FliM and CheZ peptides. Arch.Biochem.Biophys. 2008 479 105 113 2IDM 18801331 2.00 A Structure of T87I/Y106W Phosphono-CheY 2006-09-15 2007-09-25 McAdams, K.,Casper, E.S.,Matthew Haas, R.,Santarsiero, B.D.,Eggler, A.L.,Mesecar, A.,Halkides, C.J. The structures of T87I phosphono-CheY and T87I/Y106W phosphono-CheY help to explain their binding affinities to the FliM and CheZ peptides. Arch.Biochem.Biophys. 2008 479 105 113 2IQA 17895381 PFA2 FAB fragment, monoclinic apo form 2006-10-13 2007-10-09 Gardberg, A.S.,Dice, L.T.,Ou, S.,Rich, R.L.,Helmbrecht, E.,Ko, J.,Wetzel, R.,Myszka, D.G.,Patterson, P.H.,Dealwis, C. Molecular basis for passive immunotherapy of Alzheimer's disease Proc.Natl.Acad.Sci.Usa 2007 104 15659 15664 2R0Z 17895381 PFA1 FAB complexed with GripI peptide fragment 2007-08-21 2007-10-16 Gardberg, A.S.,Dice, L.T.,Ou, S.,Rich, R.L.,Helmbrecht, E.,Ko, J.,Wetzel, R.,Myszka, D.G.,Patterson, P.H.,Dealwis, C. Molecular basis for passive immunotherapy of Alzheimer's disease Proc.Natl.Acad.Sci.Usa 2007 104 15659 15664 2INX 18808119 Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas putida (pKSI) with bound 2,6-difluorophenol 2006-10-09 2007-10-23 Sigala, P.A.,Kraut, D.A.,Caaveiro, J.M.,Pybus, B.,Ruben, E.A.,Ringe, D.,Petsko, G.A.,Herschlag, D. Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole. J.Am.Chem.Soc. 2008 130 13696 13708 2PAV 17914456 Ternary complex of Profilin-Actin with the Last Poly-Pro of Human VASP 2007-03-27 2007-10-23 Ferron, F.,Rebowski, G.,Lee, S.H.,Dominguez, R. Structural basis for the recruitment of profilin-actin complexes during filament elongation by Ena/VASP. Embo J. 2007 26 4597 4606 2OCF 11818562 Human estrogen receptor alpha ligand-binding domain in complex with estradiol and the E2#23 FN3 monobody 2006-12-20 2007-11-06 Koide, A.,Abbatiello, S.,Rothgery, L.,Koide, S. Probing protein conformational changes in living cells by using designer binding proteins: application to the estrogen receptor. Proc.Natl.Acad.Sci.USA 2002 99 1253 1258 2VAD 17962222 Monomeric red fluorescent protein, DsRed.M1 2007-08-30 2007-11-06 Strongin, D.E.,Bevis, B.,Khuong, N.,Downing, M.E.,Strack, R.L.,Sundaram, K.,Glick, B.S.,Keenan, R.J. Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants. Protein Eng.Des.Sel. 2007 20 525 0 2PBD 17914456 Ternary complex of profilin-actin with the poly-PRO-GAB domain of VASP* 2007-03-28 2007-11-13 Ferron, F.,Rebowski, G.,Lee, S.H.,Dominguez, R. Structural basis for the recruitment of profilin-actin complexes during filament elongation by Ena/VASP Embo J. 2007 26 4597 4606 2Z8A 18001141 Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: I25W with CO Bound to HEME and in the Presence of 3 Atoms of XE 2007-09-04 2007-11-27 Nienhaus, K.,Knapp, J.E.,Palladino, P.,Royer Jr., W.E.,Nienhaus, G.U. Ligand Migration and Binding in the Dimeric Hemoglobin of Scapharca inaequivalvis Biochemistry 2007 46 14018 14031 3B35 18576673 Crystal structure of the M180A mutant of the aminopeptidase from Vibrio proteolyticus 2007-10-19 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B3C 18576673 Crystal structure of the M180A mutant of the aminopeptidase from Vibrio proteolyticus in complex with leucine phosphonic acid 2007-10-19 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B3S 18576673 Crystal structure of the M180A mutant of the aminopeptidase from Vibrio proteolyticus in complex with leucine 2007-10-22 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B3T 18576673 Crystal structure of the D118N mutant of the aminopeptidase from Vibrio proteolyticus 2007-10-22 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B3V 18576673 Crystal structure of the S228A mutant of the aminopeptidase from Vibrio proteolyticus 2007-10-22 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B3W 18576673 Crystal structure of the S228A mutant of the aminopeptidase from Vibrio proteolyticus in complex with leucine 2007-10-22 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 3B7I 18576673 Crystal structure of the S228A mutant of the aminopeptidase from Vibrio proteolyticus in complex with leucine phosphonic acid 2007-10-30 2007-11-27 Ataie, N.J.,Hoang, Q.Q.,Zahniser, M.P.,Tu, Y.,Milne, A.,Petsko, G.A.,Ringe, D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry 2008 47 7673 7683 2QA3 17713924 Structural Studies Reveal the Inactivation of E. coli L-aspartate aminotransferase by (S)-4,5-amino-dihydro-2-thiophenecarboxylic acid (SADTA) via two mechanisms (at pH6.5) 2007-06-14 2007-12-04 Liu, D.,Pozharski, E.,Lepore, B.W.,Fu, M.,Silverman, R.B.,Petsko, G.A.,Ringe, D. Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals ""a tale of two mechanisms"". Biochemistry 2007 46 10517 10527 2QB2 17713924 Structural Studies Reveal the Inactivation of E. coli L-aspartate aminotransferase by (s)-4,5-dihydro-2thiophenecarboylic acid (SADTA) via two mechanisms (at pH 7.0). 2007-06-15 2007-12-04 Liu, D.,Pozharski, E.,Lepore, B.W.,Fu, M.,Silverman, R.B.,Petsko, G.A.,Ringe, D. Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals ""a tale of two mechanisms"". Biochemistry 2007 46 10517 10527 2QB3 17713924 Structural Studies Reveal the Inactivation of E. coli L-Aspartate Aminotransferase by (s)-4,5-dihydro-2-thiophenecarboxylic acid (SADTA) via Two Mechanisms (at pH 7.5) 2007-06-15 2007-12-04 Liu, D.,Pozharski, E.,Lepore, B.W.,Fu, M.,Silverman, R.B.,Petsko, G.A.,Ringe, D. Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals ""a tale of two mechanisms"". Biochemistry 2007 46 10517 10527 2QDV 17824674 Structure of the Cu(II) form of the M51A mutant of amicyanin 2007-06-21 2007-12-11 Ma, J.K.,Wang, Y.,Carrell, C.J.,Mathews, F.S.,Davidson, V.L. A single methionine residue dictates the kinetic mechanism of interprotein electron transfer from methylamine dehydrogenase to amicyanin. Biochemistry 2007 46 11137 11146 2QDW 17824674 Structure of Cu(I) form of the M51A mutant of amicyanin 2007-06-21 2007-12-11 Ma, J.K.,Wang, Y.,Carrell, C.J.,Mathews, F.S.,Davidson, V.L. A single methionine residue dictates the kinetic mechanism of interprotein electron transfer from methylamine dehydrogenase to amicyanin. Biochemistry 2007 46 11137 11146 2V0U 18001137 n- and c-terminal helices of oat lov2 (404-546) are involved in light-induced signal transduction (cryo dark structure of lov2 (404-546)) 2007-05-18 2007-12-11 Halavaty, A.S.,Moffat, K. N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. Biochemistry 2007 46 14001 0 2V0W 18001137 N- and C-terminal helices of oat LOV2 (404-546) are involved in light- induced signal transduction (cryo-trapped light structure of LOV2 (404-546)) 2007-05-20 2007-12-11 Halavaty, A.S.,Moffat, K. N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. Biochemistry 2007 46 14001 0 2V1A 18001137 N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) dark structure of LOV2 (404-546)) 2007-05-22 2007-12-11 Halavaty, A.S.,Moffat, K. N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. Biochemistry 2007 46 14001 0 2V1B 18001137 N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) light structure of LOV2 (404-546)) 2007-05-22 2007-12-11 Halavaty, A.S.,Moffat, K. N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. Biochemistry 2007 46 14001 0 3BGG Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP 2007-11-26 2007-12-11 Liu, Y.,Tang, H.L.,Wang, X.Y.,Kotra, L.P.,Pai, E.F. Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP To be Published 0 0 0 0 3BEI 18250335 Crystal structure of the slow form of thrombin in a self_inhibited conformation 2007-11-19 2007-12-25 Gandhi, P.S.,Chen, Z.,Mathews, F.S.,Di Cera, E. Structural identification of the pathway of long-range communication in an allosteric enzyme. Proc.Natl.Acad.Sci.Usa 2008 105 1832 1837 3BEF 18250335 Crystal structure of thrombin bound to the extracellular fragment of PAR1 2007-11-17 2008-01-01 Gandhi, P.S.,Chen, Z.,Mathews, F.S.,Di Cera, E. Structural identification of the pathway of long-range communication in an allosteric enzyme. Proc.Natl.Acad.Sci.Usa 2008 105 1832 1837 2RK6 18181649 Structure of E163K DJ-1 2007-10-16 2008-01-15 Lakshminarasimhan, M.,Maldonado, M.T.,Zhou, W.,Fink, A.L.,Wilson, M.A. Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1. Biochemistry 2008 47 1381 1392 2Q8Z 18189347 Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase complexed with 6-amino-UMP 2007-06-12 2008-01-29 Bello, A.M.,Poduch, E.,Liu, Y.,Wei, L.,Crandall, I.,Wang, X.,Dyanand, C.,Kain, K.C.,Pai, E.F.,Kotra, L.P. Structure-Activity Relationships of C6-Uridine Derivatives Targeting Plasmodia Orotidine Monophosphate Decarboxylase. J.Med.Chem. 2008 51 439 448 2RFT 17942670 Crystal structure of influenza B virus hemagglutinin in complex with LSTa receptor analog 2007-10-01 2008-02-05 Wang, Q.,Tian, X.,Chen, X.,Ma, J. Structural basis for receptor specificity of influenza B virus hemagglutinin. Proc.Natl.Acad.Sci.Usa 2007 104 16874 16879 2RFU 17942670 Crystal structure of influenza B virus hemagglutinin in complex with LSTc receptor analog 2007-10-01 2008-02-05 Wang, Q.,Tian, X.,Chen, X.,Ma, J. Structural basis for receptor specificity of influenza B virus hemagglutinin. Proc.Natl.Acad.Sci.Usa 2007 104 16874 16879 2QLE 17965188 GFP/S205V mutant 2007-07-12 2008-02-12 Shu, X.,Leiderman, P.,Gepshtein, R.,Smith, N.R.,Kallio, K.,Huppert, D.,Remington, S.J. An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V. Protein Sci. 2007 16 2703 2710 2QM6 17960917 Crystal Structure of Helicobacter Pylori Gamma-Glutamyltranspeptidase in Complex with Glutamate 2007-07-14 2008-02-12 Morrow, A.L.,Williams, K.,Sand, A.,Boanca, G.,Barycki, J.J. Characterization of Helicobacter pylori gamma-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis. Biochemistry 2007 46 13407 13414 2QMC 17960917 Crystal Structure of Helicobacter Pylori Gamma-Glutamyltranspeptidase T380A Mutant 2007-07-15 2008-02-12 Morrow, A.L.,Williams, K.,Sand, A.,Boanca, G.,Barycki, J.J. Characterization of Helicobacter pylori gamma-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis. Biochemistry 2007 46 13407 13414 2RL7 18272523 Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 4.8 2007-10-18 2008-02-12 Olson, L.J.,Hindsgaul, O.,Dahms, N.M.,Kim, J.J. Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor. J.Biol.Chem. 2008 283 10124 10134 2EFW 17521668 Crystal structure of the RTP:nRB complex from Bacillus subtilis 2007-02-26 2008-02-26 Vivian, J.P.,Porter, C.J.,Wilce, J.A.,Wilce, M.C.J. An asymmetric structure of the Bacillus subtilis replication terminator protein in complex with DNA J.Mol.Biol. 2007 370 481 491 3BHF 18251505 Crystal structure of R49K mutant of Monomeric Sarcosine Oxidase crystallized in PEG as precipitant 2007-11-28 2008-02-26 Hassan-Abdallah, A.,Zhao, G.,Chen, Z.W.,Mathews, F.S.,Schuman Jorns, M. Arginine 49 is a bifunctional residue important in catalysis and biosynthesis of monomeric sarcosine oxidase: a context-sensitive model for the electrostatic impact of arginine to lysine mutations. Biochemistry 2008 47 2913 2922 3BHK 18251505 Crystal structure of R49K mutant of monomeric sarcosine oxidase crystallized in phosphate as precipitant 2007-11-28 2008-02-26 Hassan-Abdallah, A.,Zhao, G.,Chen, Z.W.,Mathews, F.S.,Schuman Jorns, M. Arginine 49 is a bifunctional residue important in catalysis and biosynthesis of monomeric sarcosine oxidase: a context-sensitive model for the electrostatic impact of arginine to lysine mutations. Biochemistry 2008 47 2913 2922 3BS7 18287031 Crystal structure of the Sterile Alpha Motif (SAM) domain of Hyphen/Aveugle 2007-12-22 2008-02-26 Rajakulendran, T.,Sahmi, M.,Kurinov, I.,Tyers, M.,Therrien, M.,Sicheri, F. CNK and HYP form a discrete dimer by their SAM domains to mediate RAF kinase signaling. Proc.Natl.Acad.Sci.USA 2008 105 2836 2841 3BV9 18315550 Structure of Thrombin Bound to the Inhibitor FM19 2008-01-05 2008-03-04 Nieman, M.T.,Burke, F.,Warnock, M.,Zhou, Y.,Sweigart, J.,Chen, A.,Ricketts, D.,Lucchesi, B.R.,Chen, Z.,Di Cera, E.,Hilfinger, J.,Kim, J.S.,Mosberg, H.I.,Schmaier, A.H. Thrombostatin FM compounds: direct thrombin inhibitors - mechanism of action in vitro and in vivo. J.Thromb.Haemost. 2008 6 837 845 3C77 1.08 A crystal structure of nitrophorin 4 from Rhodnius prolixus containing FE(III) deuteroporphyrin ix complexed with ammonia at ph 7.5 2008-02-06 2008-03-04 Amoia, A.M.,Montfort, W.R. Heme Distortion in Nitrophorin 4: High Resolution Structures of Mutated Positions L123V and L133V and Heme Altered Proteins To be Published 0 0 0 0 3C78 0.98 A crystal structure of nitrophorin 4 from Rhodnius prolixus containing FE(III) 2,4 dimethyl deuteroporphyrin ix complexed with ammonia at ph 7.5 2008-02-06 2008-03-04 Amoia, A.M.,Montfort, W.R. Heme Distortion in Nitrophorin 4: High Resolution Structures of Mutated Positions L123V and L133V and Heme Altered Proteins To be Published 0 0 0 0 3BEU 18377928 Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity 2007-11-20 2008-03-11 Page, M.J.,Carrell, C.J.,Di Cera, E. Engineering protein allostery: 1.05 A resolution structure and enzymatic properties of a Na+-activated trypsin. J.Mol.Biol. 2008 378 666 672 2QAB 18344977 Crystal Structure of Estrogen Receptor Alpha Ligand Binding Domain Mutant 537S Complexed with an Ethyl Indazole Compound 2007-06-14 2008-03-18 Nettles, K.W.,Bruning, J.B.,Gil, G.,Nowak, J.,Sharma, S.K.,Hahm, J.B.,Kulp, K.,Hochberg, R.B.,Zhou, H.,Katzenellenbogen, J.A.,Katzenellenbogen, B.S.,Kim, Y.,Joachmiak, A.,Greene, G.L. NFkappaB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses Nat.Chem.Biol. 2008 4 241 247 2QH6 18344977 Crystal Structure of the Estrogen Receptor Alpha Ligand Binding Domain Complexed with an Oxabicyclic diarylethylene Compound 2007-06-29 2008-03-18 Nettles, K.W.,Bruning, J.B.,Gil, G.,Nowak, J.,Sharma, S.K.,Hahm, J.B.,Kulp, K.,Hochberg, R.B.,Zhou, H.,Katzenellenbogen, J.A.,Katzenellenbogen, B.S.,Kim, Y.,Joachmiak, A.,Greene, G.L. 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Nat.Chem.Biol. 2008 4 700 707 3CCD 18702519 1.0 A Structure of Post-Succinimide His15Asp HPr 2008-02-25 2008-10-21 Napper, S.,Prasad, L.,Delbaere, L.T. Structural investigation of a phosphorylation-catalyzed, isoaspartate-free, protein succinimide: crystallographic structure of post-succinimide His15Asp histidine-containing protein Biochemistry 2008 47 9486 9496 2V4E 18953349 A non-cytotoxic DsRed variant for whole-cell labeling 2008-09-20 2008-11-04 Strack, R.L.,Strongin, D.E.,Bhattacharyya, D.,Tao, W.,Berman, A.,Broxmeyer, H.E.,Keenan, R.J.,Glick, B.S. A Noncytotoxic Dsred Variant for Whole-Cell Labeling. Nat.Methods 2008 5 955 0 2VV6 18942854 BJFIXLH IN FERRIC FORM 2008-06-04 2008-11-04 Ayers, R.A.,Moffat, K. Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains. Biochemistry 2008 47 12078 0 2VV7 18942854 BJFIXLH IN UNLIGANDED FERROUS FORM 2008-06-04 2008-11-04 Ayers, R.A.,Moffat, K. Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains. 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J.Virol. 2012 86 12571 12581 3U8B 23482564 Functionally selective inhibition of Group IIA phospholipase A2 reveals a role for vimentin in regulating arachidonic acid metabolism 2011-10-16 2012-10-17 Lee, L.K.,Bryant, K.J.,Bouveret, R.,Lei, P.W.,Duff, A.P.,Harrop, S.J.,Huang, E.P.,Harvey, R.P.,Gelb, M.H.,Gray, P.P.,Curmi, P.M.,Cunningham, A.M.,Church, W.B.,Scott, K.F. Selective Inhibition of Human Group IIA-secreted Phospholipase A2 (hGIIA) Signaling Reveals Arachidonic Acid Metabolism Is Associated with Colocalization of hGIIA to Vimentin in Rheumatoid Synoviocytes. J.Biol.Chem. 2013 288 15269 15279 3U8D 23482564 Functionally selective inhibition of Group IIA phospholipase A2 reveals a role for vimentin in regulating arachidonic acid metabolism 2011-10-16 2012-10-17 Lee, L.K.,Bryant, K.J.,Bouveret, R.,Lei, P.W.,Duff, A.P.,Harrop, S.J.,Huang, E.P.,Harvey, R.P.,Gelb, M.H.,Gray, P.P.,Curmi, P.M.,Cunningham, A.M.,Church, W.B.,Scott, K.F. Selective Inhibition of Human Group IIA-secreted Phospholipase A2 (hGIIA) Signaling Reveals Arachidonic Acid Metabolism Is Associated with Colocalization of hGIIA to Vimentin in Rheumatoid Synoviocytes. J.Biol.Chem. 2013 288 15269 15279 3U8I 23482564 Functionally selective inhibition of Group IIA phospholipase A2 reveals a role for vimentin in regulating arachidonic acid metabolism 2011-10-17 2012-10-17 Lee, L.K.,Bryant, K.J.,Bouveret, R.,Lei, P.W.,Duff, A.P.,Harrop, S.J.,Huang, E.P.,Harvey, R.P.,Gelb, M.H.,Gray, P.P.,Curmi, P.M.,Cunningham, A.M.,Church, W.B.,Scott, K.F. Selective Inhibition of Human Group IIA-secreted Phospholipase A2 (hGIIA) Signaling Reveals Arachidonic Acid Metabolism Is Associated with Colocalization of hGIIA to Vimentin in Rheumatoid Synoviocytes. J.Biol.Chem. 2013 288 15269 15279 4G7L 23043644 Crystal Structure of rat Heme oxygenase-1 in complex with Heme and O2 2012-07-20 2012-10-31 Sugishima, M.,Moffat, K.,Noguchi, M. Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 2012 51 8554 8562 4G8U 23043644 Rat Heme Oxygenase-1 in complex with Heme and O2 with 13 hr illumination: Laser off 2012-07-23 2012-10-31 Sugishima, M.,Moffat, K.,Noguchi, M. Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 2012 51 8554 8562 4G8W 23043644 Rat Heme Oxygenase-1 in complex with Heme and O2 with 13 hr illumination: Laser on 2012-07-23 2012-10-31 Sugishima, M.,Moffat, K.,Noguchi, M. Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 2012 51 8554 8562 4G98 23043644 Rat Heme Oxygenase-1 in complex with Heme and CO at 100K 2012-07-23 2012-10-31 Sugishima, M.,Moffat, K.,Noguchi, M. Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 2012 51 8554 8562 4G99 23043644 Rat Heme Oxygenase-1 in complex with Heme and CO at 100 K after warming to 160 K 2012-07-23 2012-10-31 Sugishima, M.,Moffat, K.,Noguchi, M. Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis. Biochemistry 2012 51 8554 8562 3UKO Crystal Structure of S-Nitrosoglutathione Reductase from Arabidopsis thaliana, complex with NADH 2011-11-09 2012-11-14 Crotty, J.,Greving, M.,Brettschneider, S.,Weichsel, A.,Wildner, G.F.,Vierling, E.,Montfort, W.R. Crystal structure and kinetic behavior of alcohol dehydrogenase III /S-nitrosoglutathione reductase from arabidopsis thaliana To be Published 0 0 0 0 3UMG Crystal Structure of the Defluorinating L-2-Haloacid Dehalogenase Rha0230 2011-11-13 2012-11-14 Chan, P.W.Y.,To, T.K.W.,Petit, P.,Tran, C.,Waelti, M.,Savchenko, A.,Yakunin, A.F.,Edwards, E.A.,Pai, E.F. Structural adaptations of L-2-haloacid dehalogenases that enable hydrolytic defluorination To be Published 0 0 0 0 4FNV 23011846 Crystal Structure of Heparinase III 2012-06-20 2012-11-28 Dong, W.,Lu, W.,McKeehan, W.L.,Luo, Y.,Ye, S. Structural basis of heparan sulfate-specific degradation by heparinase III. Protein Cell 2012 3 950 961 3V19 Forestalling insulin fibrillation by insertion of a chiral clamp mechanism-based application of protein engineering to global health 2011-12-09 2012-12-12 Wan, Z.L.,Hua, Q.X.,Wickramasinghe, N.P.,Huang, K.,Petkova, A.T.,Hu, S.Q.,Phillips, N.B.,Yeh, I.J.,Whittake, J.,Ismail-Beigi, F.,Katsoyyannis, P.G.,Tycko, R.,Weiss, M.A. Forestalling insulin fibrillation by insertion of a chiral clamp mechanism-based application of protein engineering to global health To be Published 0 0 0 0 4FYJ 23192026 Crystal Structure of P. aeruginosa peptidyl-tRNA hydrolase 2012-07-04 2012-12-12 Hughes, R.C.,McFeeters, H.,Coates, L.,McFeeters, R.L. Recombinant production, crystallization and X-ray crystallographic structure determination of the peptidyl-tRNA hydrolase of Pseudomonas aeruginosa. Acta Crystallogr.,Sect.F 2012 68 1472 1476 4HRT 23458680 Scapharca tetrameric hemoglobin, unliganded 2012-10-28 2012-12-12 Ronda, L.,Bettati, S.,Henry, E.R.,Kashav, T.,Sanders, J.M.,Royer, W.E.,Mozzarelli, A. Tertiary and Quaternary Allostery in Tetrameric Hemoglobin from Scapharca inaequivalvis. Biochemistry 2013 52 2108 2117 4E0P 23382649 Protelomerase tela covalently complexed with substrate DNA 2012-03-05 2013-02-13 Shi, K.,Huang, W.M.,Aihara, H. An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol. 2013 11 0 0 3W07 23395822 Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP. 2012-10-22 2013-02-20 Fujihashi, M.,Mito, K.,Pai, E.F.,Miki, K. Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism. J.Biol.Chem. 2013 288 9011 9016 3W07 23395822 Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP. 2012-10-22 2013-02-20 Fujihashi, M.,Mito, K.,Pai, E.F.,Miki, K. Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism. J.Biol.Chem. 2013 288 9011 9016 4HUD 23434847 Structure of the bacteriophage T4 tail terminator protein, gp15. 2012-11-02 2013-02-27 Fokine, A.,Zhang, Z.,Kanamaru, S.,Bowman, V.D.,Aksyuk, A.A.,Arisaka, F.,Rao, V.B.,Rossmann, M.G. The molecular architecture of the bacteriophage t4 neck. J.Mol.Biol. 2013 425 1731 1744 4HRR 23458680 Scapharca tetrameric hemoglobin, CO-state 2012-10-28 2013-03-13 Ronda, L.,Bettati, S.,Henry, E.R.,Kashav, T.,Sanders, J.M.,Royer, W.E.,Mozzarelli, A. Tertiary and Quaternary Allostery in Tetrameric Hemoglobin from Scapharca inaequivalvis. Biochemistry 2013 52 2108 2117 3ZFE 23509286 Human enterovirus 71 in complex with capsid binding inhibitor WIN51711 2012-12-11 2013-03-27 Plevka, P.,Perera, R.,Yap, M.L.,Cardosa, J.,Kuhn, R.J.,Rossmann, M.G. Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA 2013 110 5463 0 3ZFF 23509286 Human enterovirus 71 in complex with capsid binding inhibitor WIN51711 2012-12-11 2013-03-27 Plevka, P.,Perera, R.,Yap, M.L.,Cardosa, J.,Kuhn, R.J.,Rossmann, M.G. Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA 2013 110 5463 0 3ZFG 23509286 Human enterovirus 71 in complex with capsid binding inhibitor WIN51711 2012-12-11 2013-03-27 Plevka, P.,Perera, R.,Yap, M.L.,Cardosa, J.,Kuhn, R.J.,Rossmann, M.G. Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA 2013 110 5463 0 4K00 24100308 Crystal structure of Slr0204, a 1,4-dihydroxy-2-naphthoyl-CoA thioesterase from Synechocystis 2013-04-03 2013-04-17 Furt, F.,Allen, W.J.,Widhalm, J.R.,Madzelan, P.,Rizzo, R.C.,Basset, G.,Wilson, M.A. Functional convergence of structurally distinct thioesterases from cyanobacteria and plants involved in phylloquinone biosynthesis. Acta Crystallogr.,Sect.D 2013 69 1876 1888 4F73 Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of CA-p2 cleavage site 2012-05-15 2013-05-15 Mittal, S.,Nalam, M.N.L.,Schiffer, C.A. Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of CA-p2 cleavage site To be Published 0 0 0 0 4F74 Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of the substrate MA-CA. 2012-05-15 2013-05-15 Mittal, S.,Nalam, M.N.L.,Schiffer, C.A. Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of the substrate MA-CA. To be Published 0 0 0 0 4F75 Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of the substrate RH-IN 2012-05-15 2013-05-15 Mittal, S.,Nalam, M.N.L.,Schiffer, C.A. Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of the substrate RH-IN To be Published 0 0 0 0 4F76 Crystal Structure of the active HIV-1 Protease in Complex with the products of p1-p6 substrate 2012-05-15 2013-05-15 Mittal, S.,Nalam, M.N.L.,Schiffer, C.A. Crystal Structure of the active HIV-1 Protease in Complex with the products of p1-p6 substrate To be Published 0 0 0 0 4FW2 23451105 Crystal structure of RSV three-domain integrase with disordered N-terminal domain 2012-06-29 2013-05-15 Shi, K.,Pandey, K.K.,Bera, S.,Vora, A.C.,Grandgenett, D.P.,Aihara, H. A possible role for the asymmetric C-terminal domain dimer of Rous sarcoma virus integrase in viral DNA binding. Plos One 2013 8 0 0 4K7Z Crystal structure of the C136(42)A/C141(47)A double mutant of Tn501 MerA in complex with NADP and Hg2+ 2013-04-17 2013-05-15 Dong, A.,Falkowski, M.,Malone, M.,Miller, S.M.,Pai, E.F. Crystal structure of the C136(42)A/C141(47)A double mutant of Tn501 MerA in complex with NADP and Hg2+ To be Published 0 0 0 0 4K8D Crystal structure of the C558(464)A/C559(465)A double mutant of Tn501 MerA in complex with NADPH and Hg2+ 2013-04-18 2013-05-22 Dong, A.,Falkowski, M.,Malone, M.,Miller, S.M.,Pai, E.F. Crystal structure of the C136(42)A/C141(47)A double mutant of Tn501 MerA in complex with NADPH and Hg2+ to be published 0 0 0 0 4I4B 23802607 HMG-CoA Reductase from Pseudomonas mevalonii complexed with NAD and intermediate hemiacetal form of HMG-CoA 2012-11-27 2013-07-17 Steussy, C.N.,Critchelow, C.J.,Schmidt, T.,Min, J.K.,Wrensford, L.V.,Burgner, J.W.,Rodwell, V.W.,Stauffacher, C.V. A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry 2013 52 5195 5205 4I56 23802607 HMG-CoA reductase from pseudomonas mevalonii complexed with dithio-HMG-coa 2012-11-28 2013-07-17 Steussy, C.N.,Critchelow, C.J.,Schmidt, T.,Min, J.K.,Wrensford, L.V.,Burgner, J.W.,Rodwell, V.W.,Stauffacher, C.V. A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry 2013 52 5195 5205 4I64 23802607 3-hydroxy-3-methylglutaryl Coenzyme A reductase from Pseudomonas mevalonii, a high resolution native structure 2012-11-29 2013-07-17 Steussy, C.N.,Critchelow, C.J.,Schmidt, T.,Min, J.K.,Wrensford, L.V.,Burgner, J.W.,Rodwell, V.W.,Stauffacher, C.V. A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry 2013 52 5195 5205 4I6W 23802607 3-hydroxy-3-methylglutaryl (HMG) Coenzyme-A reductase complexed with thiomevalonate 2012-11-30 2013-07-17 Steussy, C.N.,Critchelow, C.J.,Schmidt, T.,Min, J.K.,Wrensford, L.V.,Burgner, J.W.,Rodwell, V.W.,Stauffacher, C.V. A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry 2013 52 5195 5205 4I6Y 23802607 3-hydroxy-3-methyl (HMG) Coenzyme A Reductase bound to R-Mevalonate 2012-11-30 2013-07-17 Steussy, C.N.,Critchelow, C.J.,Schmidt, T.,Min, J.K.,Wrensford, L.V.,Burgner, J.W.,Rodwell, V.W.,Stauffacher, C.V. A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry 2013 52 5195 5205 4G93 23871485 CRYSTAL STRUCTURE OF THE HUMAN HEPATITIS B VIRUS T = 4 CAPSID, ADYW STRAIN, in COMPLEX WITH THE PHENYLPROPENAMIDE ASSEMBLY ACCELERATOR AT-130 2012-07-23 2013-07-24 Katen, S.P.,Tan, Z.,Chirapu, S.R.,Finn, M.G.,Zlotnick, A. Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure. Structure 2013 21 1406 1416 4GRE 23789744 DNA holliday junction stabilized by iodine halogen bond. I2J Construct of related reference 2012-08-24 2013-07-31 Carter, M.,Voth, A.R.,Scholfield, M.R.,Rummel, B.,Sowers, L.C.,Ho, P.S. Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry 2013 52 4891 4903 4GZG Crystal structures of DHPA-CO complex 2012-09-06 2013-09-11 Zhao, J.,Franzen, S. The role of distal histidine in carbonmonoxide DHP structure To be Published 0 0 0 0 4LXG 23879719 Crystal structure of DxnB2, a carbon - carbon bond hydrolase from Sphingomonas wittichii RW1 2013-07-29 2013-09-18 Ruzzini, A.C.,Bhowmik, S.,Yam, K.C.,Ghosh, S.,Bolin, J.T.,Eltis, L.D. The Lid Domain of the MCP Hydrolase DxnB2 Contributes to the Reactivity toward Recalcitrant PCB Metabolites. Biochemistry 2013 52 5685 5695 4HCY 24351929 Structure of a eukaryotic thiaminase-I bound to the thiamin analogue 3-deazathiamin 2012-10-01 2013-10-02 Kreinbring, C.A.,Remillard, S.P.,Hubbard, P.,Brodkin, H.R.,Leeper, F.J.,Hawksley, D.,Lai, E.Y.,Fulton, C.,Petsko, G.A.,Ringe, D. Structure of a eukaryotic thiaminase I. Proc.Natl.Acad.Sci.USA 2014 111 137 142 4HHD 24316821 2.75 Angstrom resolution crystal structure of the A. thaliana LOV2 domain with an extended N-terminal A' helix (cryo dark structure) 2012-10-09 2013-10-09 Halavaty, A.S.,Moffat, K. Coiled-coil dimerization of the LOV2 domain of the blue-light photoreceptor phototropin 1 from Arabidopsis thaliana. Acta Crystallogr.,Sect.F 2013 69 1316 1321 4LYE 24067021 Crystal structure of the S105A mutant of a C-C hydrolase, DxnB2 from Sphingomonas wittichii RW1, in complex with substrate HOPDA 2013-07-31 2013-10-09 Ruzzini, A.C.,Bhowmik, S.,Ghosh, S.,Yam, K.C.,Bolin, J.T.,Eltis, L.D. A substrate-assisted mechanism of nucleophile activation in a ser-his-asp containing C-C bond hydrolase. Biochemistry 2013 52 7428 7438 4MYB Crystal Structure of Francisella tularensis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) 2013-09-27 2013-11-06 Noble, S.M.,Tsang, A.K.,Couch, R.D. Crystal Structure of Francisella tularensis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) To be Published 0 0 0 0 3WJY 24151964 Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with 6-amino-UMP 2013-10-17 2013-12-04 Fujihashi, M.,Ishida, T.,Kuroda, S.,Kotra, L.P.,Pai, E.F.,Miki, K. Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc. 2013 135 17432 17443 3WJY 24151964 Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with 6-amino-UMP 2013-10-17 2013-12-04 Fujihashi, M.,Ishida, T.,Kuroda, S.,Kotra, L.P.,Pai, E.F.,Miki, K. Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc. 2013 135 17432 17443 3WJZ 24151964 Orotidine 5'-monophosphate decarboxylase D75N mutant from M. thermoautotrophicus complexed with 6-amino-UMP 2013-10-17 2013-12-04 Fujihashi, M.,Ishida, T.,Kuroda, S.,Kotra, L.P.,Pai, E.F.,Miki, K. Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc. 2013 135 17432 17443 3WJZ 24151964 Orotidine 5'-monophosphate decarboxylase D75N mutant from M. thermoautotrophicus complexed with 6-amino-UMP 2013-10-17 2013-12-04 Fujihashi, M.,Ishida, T.,Kuroda, S.,Kotra, L.P.,Pai, E.F.,Miki, K. Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc. 2013 135 17432 17443 4LCE 24657618 CtBP1 in complex with substrate MTOB 2013-06-21 2014-03-19 Hilbert, B.J.,Grossmann, S.R.,Schiffer, C.A.,Royer, W.E. Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design. Febs Lett. 2014 588 1743 1748 4LCJ 24657618 CtBP2 in complex with substrate MTOB 2013-06-21 2014-03-19 Hilbert, B.J.,Grossmann, S.R.,Schiffer, C.A.,Royer, W.E. Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design. Febs Lett. 2014 588 1743 1748 4OI3 25285530 Crystal structure analysis of SCO4226 from Streptomyces coelicolor A3(2) 2014-01-18 2014-09-17 Lu, M.,Jiang, Y.L.,Wang, S.,Jin, H.,Zhang, R.G.,Virolle, M.J.,Chen, Y.,Zhou, C.Z. Streptomyces coelicolor SCO4226 Is a Nickel Binding Protein. Plos One 2014 9 0 0 4QJ6 25355911 Crystal structure of inactive HIV-1 protease variant (I50V/A71V) in complex with p1-p6 substrate variant (L449F) 2014-06-03 2014-10-29 Ozen, A.,Lin, K.H.,Kurt Yilmaz, N.,Schiffer, C.A. Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease. 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Protein Sci. 2016 25 689 701 4WM7 25554786 Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril 2014-10-08 2015-01-14 Liu, Y.,Sheng, J.,Fokine, A.,Meng, G.,Shin, W.H.,Long, F.,Kuhn, R.J.,Kihara, D.,Rossmann, M.G. Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children. Science 2015 347 71 74 4WM7 25554786 Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril 2014-10-08 2015-01-14 Liu, Y.,Sheng, J.,Fokine, A.,Meng, G.,Shin, W.H.,Long, F.,Kuhn, R.J.,Kihara, D.,Rossmann, M.G. Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children. Science 2015 347 71 74 4WM8 25554786 Crystal Structure of Human Enterovirus D68 2014-10-08 2015-01-14 Liu, Y.,Sheng, J.,Fokine, A.,Meng, G.,Shin, W.H.,Long, F.,Kuhn, R.J.,Kihara, D.,Rossmann, M.G. Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children. Science 2015 347 71 74 4Q1Y 25091085 Mutations Outside the Active Site of HIV-1 Protease Alter Enzyme Structure and Dynamic Ensemble of the Active Site to Confer Drug Resistance 2014-04-04 2015-02-18 Ragland, D.A.,Nalivaika, E.A.,Nalam, M.N.,Prachanronarong, K.L.,Cao, H.,Bandaranayake, R.M.,Cai, Y.,Kurt-Yilmaz, N.,Schiffer, C.A. Drug resistance conferred by mutations outside the active site through alterations in the dynamic and structural ensemble of HIV-1 protease. J.Am.Chem.Soc. 2014 136 11956 11963 4OOP 26666293 Arabidopsis thaliana dUTPase with with magnesium and alpha,beta-imido-dUTP 2014-02-03 2015-04-08 Inoguchi, N.,Chaiseeda, K.,Yamanishi, M.,Kim, M.K.,Jang, Y.,Bajaj, M.,Chia, C.P.,Becker, D.F.,Moriyama, H. Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: the role of tryptophan 93 in ligand orientation. BMC Res Notes 2015 8 784 784 4UTS 25524427 Room temperature crystal structure of the fast switching M159T mutant of fluorescent protein Dronpa 2014-07-22 2015-06-03 Kaucikas, M.,Fitzpatrick, A.,Bryan, E.,Struve, A.,Henning, R.,Kosheleva, I.,Srajer, V.,Groenhof, G.,Van Thor, J.J. Room Temperature Crystal Structure of the Fast Switching M159T Mutant of the Fluorescent Protein Dronpa. Proteins 2015 83 397 0 5DEI BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA 2015-08-25 2015-09-16 Bera, A.K.,Hasson, M.S. BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA to be published 0 0 0 0 5DGD Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida 2015-08-27 2015-09-16 Bera, A.K.,Hasson, M.S. Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida to be published 0 0 0 0 5DGT BENZOYLFORMATE DECARBOXYLASE H70A MUTANT at pH 8.5 FROM PSEUDOMONAS PUTIDA 2015-08-28 2015-09-23 Bera, A.K.,Hasson, M.S. BENZOYLFORMATE DECARBOXYLASE H70A MUTANT at pH 8.5 FROM PSEUDOMONAS PUTIDA to be published 0 0 0 0 4YP5 26457427 Crystal structure of Methanobacterium thermoautotrophicum NMNAT in complex with NADP 2015-03-12 2015-10-14 Pfoh, R.,Pai, E.F.,Saridakis, V. Nicotinamide mononucleotide adenylyltransferase displays alternate binding modes for nicotinamide nucleotides. Acta Crystallogr. D Biol. Crys 2015 71 2032 2039 4YP7 26457427 Crystal structure of Methanobacterium thermoautotrophicum NMNAT in complex with NADP 2015-03-12 2015-10-14 Pfoh, R.,Pai, E.F.,Saridakis, V. Nicotinamide mononucleotide adenylyltransferase displays alternate binding modes for nicotinamide nucleotides. Acta Crystallogr. D Biol. 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