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The Extended Interactions and Gla Domain of Blood Coagulation Factor Xa Biochemistry 2003 42 7959 7966 1L2F 14621988 Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain 2002-02-20 2003-09-23 Shin, D.H.,Nguyen, H.H.,Jancarik, J.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Biochemistry 2003 42 13429 13437 1MRV 12517337 crystal structure of an inactive Akt2 kinase domain 2002-09-18 2003-09-23 Huang, X.,Begley, M.,Morgenstern, K.A.,Gu, Y.,Rose, P.,Zhao, H.,Zhu, X. Crystal structure of an inactive akt2 kinase domain Structure 2003 11 21 30 1MRY 12517337 crystal structure of an inactive akt2 kinase domain 2002-09-18 2003-09-23 Huang, X.,Begley, M.,Morgenstern, K.A.,Gu, Y.,Rose, P.,Zhao, H.,Zhu, X. 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The structure of a Bcl-xl/Bim fragment complex: Implications for Bim function Immunity 2003 19 341 352 1Q33 12948489 Crystal structure of human ADP-ribose pyrophosphatase NUDT9 2003-07-28 2003-09-30 Shen, B.W.,Perraud, A.L.,Scharenberg, A.,Stoddard, B.L. The Crystal Structure and Mutational Analysis of Human NUDT9 J.Mol.Biol. 2003 332 385 398 1Q5Y 12970756 Nickel-Bound C-terminal Regulatory Domain of NikR 2003-08-11 2003-09-30 Schreiter, E.R.,Sintchak, M.D.,Guo, Y.,Chivers, P.T.,Sauer, R.T.,Drennan, C.L. Crystal Structure of the Nickel-Responsive Transcription Factor NikR Nat.Struct.Biol. 2003 10 794 799 1Q8C 15146506 A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to NusB proteins 2003-08-20 2003-09-30 Liu, J.,Yokota, H.,Kim, R.,Kim, S.-H. 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Biochemistry 2004 43 5181 5187 1SDS 15130481 Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA 2004-02-13 2004-05-18 Hamma, T.,Ferre-D'Amare, A. Structure of Protein L7Ae Bound to a K-Turn Derived from an Archaeal Box H/ACA sRNA at 1.8 A Resolution. STRUCTURE 2004 12 893 903 1PX3 14621996 E. COLI (LACZ) BETA-GALACTOSIDASE (G794A) 2003-07-02 2004-06-15 Juers, D.H.,Hakda, S.,Matthews, B.W.,Huber, R.E. Structural Basis for the Altered Activity of Gly794 Variants of Escherichia coli Beta-Galactosidase Biochemistry 2003 42 13505 13511 1PX4 14621996 E. COLI (LACZ) BETA-GALACTOSIDASE (G794A) WITH IPTG BOUND 2003-07-02 2004-06-15 Juers, D.H.,Hakda, S.,Matthews, B.W.,Huber, R.E. 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Biochemistry 2004 43 12210 12219 1WEG 15326180 Catalytic Domain Of Muty From Escherichia Coli K142A Mutant 2004-05-25 2004-09-21 Manuel, R.C.,Hitomi, K.,Arvai, A.S.,House, P.G.,Kurtz, A.J.,Dodson, M.L.,McCullough, A.K.,Tainer, J.A.,Lloyd, R.S. Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase J.Biol.Chem. 2004 279 46930 46939 1R9X 15381761 Bacterial cytosine deaminase D314G mutant. 2003-10-31 2004-10-05 Mahan, S.D.,Ireton, G.C.,Knoeber, C.,Stoddard, B.L.,Black, M.E. Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy. Protein Eng.Des.Sel. 2004 17 625 633 1R9Z 15381761 Bacterial cytosine deaminase D314S mutant. 2003-10-31 2004-10-05 Mahan, S.D.,Ireton, G.C.,Knoeber, C.,Stoddard, B.L.,Black, M.E. Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy. 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Protein Eng.Des.Sel. 2004 17 625 633 1RU0 15182178 Crystal structure of DCoH2, a paralog of DCoH, the Dimerization Cofactor of HNF-1 2003-12-10 2004-10-12 Rose, R.B.,Pullen, K.E.,Bayle, J.H.,Crabtree, G.R.,Alber, T. Biochemical and structural basis for partially redundant enzymatic and transcriptional functions of DCoH and DCoH2 Biochemistry 2004 43 7345 7355 1RZR 15369672 crystal structure of transcriptional regulator-phosphoprotein-DNA complex 2003-12-27 2004-10-12 Schumacher, M.A.,Allen, G.S.,Diel, M.,Seidel, G.,Hillen, W.,Brennan, R.G. Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P. Cell(Cambridge,Mass.) 2004 118 731 741 1U5Z 15451660 The Crystal structure of murine APRIL, pH 8.5 2004-07-28 2004-10-12 Wallweber, H.J.,Compaan, D.M.,Starovasnik, M.A.,Hymowitz, S.G. The Crystal Structure of A Proliferation-inducing Ligand, APRIL. J.Mol.Biol. 2004 343 283 290 1S4M 15468322 Crystal structure of flavin binding to FAD synthetase from Thermotoga maritina 2004-01-16 2004-10-19 Wang, W.,Kim, R.,Yokota, H.,Kim, S.-H. Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima Proteins 2005 58 246 248 1XJD 15364937 Crystal Structure of PKC-theta complexed with Staurosporine at 2A resolution 2004-09-23 2004-10-19 Xu, Z.B.,Chaudhary, D.,Olland, S.,Wolfrom, S.,Czerwinski, R.,Malakian, K.,Lin, L.,Stahl, M.L.,Joseph-McCarthy, D.,Benander, C.,Fitz, L.,Greco, R.,Somers, W.S.,Mosyak, L. Catalytic domain crystal structure of protein kinase C-theta (PKCtheta) J.Biol.Chem. 2004 279 50401 50409 1T4K 15491612 Crystal Structure of Unliganded Aldolase Antibody 93F3 Fab 2004-04-29 2004-11-02 Zhu, X.,Tanaka, F.,Hu, Y.,Heine, A.,Fuller, R.,Zhong, G.,Olson, A.J.,Lerner, R.A.,Barbas, C.F.,Wilson, I.A. The Origin of Enantioselectivity in Aldolase Antibodies: Crystal Structure, Site-directed Mutagenesis, and Computational Analysis J.Mol.Biol. 2004 343 1269 1280 1XJL Structure of human annexin A2 in the presence of calcium ions 2004-09-23 2004-11-09 Rosengarth, A.,Luecke, H. Annexin A2: Does it induce membrane aggregation by a new multimeric state of the protein? Annexins 2004 1 129 136 1XNV 15518551 Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB), apo form #1 2004-10-05 2004-11-09 Diacovich, L.,Mitchell, D.L.,Pham, H.,Gago, G.,Melgar, M.M.,Khosla, C.,Gramajo, H.,Tsai, S.-C. Crystal Structure of the beta-Subunit of Acyl-CoA Carboxylase: Structure-Based Engineering of Substrate Specificity Biochemistry 2004 43 14027 14036 1XNW 15518551 Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB), apo form #2, mutant D422I 2004-10-05 2004-11-09 Diacovich, L.,Mitchell, D.L.,Pham, H.,Gago, G.,Melgar, M.M.,Khosla, C.,Gramajo, H.,Tsai, S.-C. Crystal Structure of the beta-Subunit of Acyl-CoA Carboxylase: Structure-Based Engineering of Substrate Specificity Biochemistry 2004 43 14027 14036 1XNY 15518551 Biotin and propionyl-CoA bound to Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB) 2004-10-05 2004-11-09 Diacovich, L.,Mitchell, D.L.,Pham, H.,Gago, G.,Melgar, M.M.,Khosla, C.,Gramajo, H.,Tsai, S.-C. Crystal Structure of the beta-Subunit of Acyl-CoA Carboxylase: Structure-Based Engineering of Substrate Specificity Biochemistry 2004 43 14027 14036 1XO6 15518551 Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB), apo form #3 2004-10-05 2004-11-09 Diacovich, L.,Mitchell, D.L.,Pham, H.,Gago, G.,Melgar, M.M.,Khosla, C.,Gramajo, H.,Tsai, S.-C. Crystal Structure of the beta-Subunit of Acyl-CoA Carboxylase: Structure-Based Engineering of Substrate Specificity Biochemistry 2004 43 14027 14036 1T9I 15518550 I-CreI(D20N)/DNA complex 2004-05-17 2004-11-16 Chevalier, B.,Sussman, D.,Otis, C.,Noel, A.J.,Turmel, M.,Lemieux, C.,Stephens, K.,Monnat Jr., R.J.,Stoddard, B.L. Metal-Dependent DNA Cleavage Mechanism of the I-CreI LAGLIDADG Homing Endonuclease. Biochemistry 2004 43 14015 14026 1QW7 16188223 Structure of an Engineered Organophosphorous Hydrolase with Increased Activity Toward Hydrolysis of Phosphothiolate Bonds 2003-09-01 2004-11-30 Grimsley, J.K.,Calamini, B.,Wild, J.R.,Mesecar, A.D. Structural and mutational studies of organophosphorus hydrolase reveal a cryptic and functional allosteric-binding site. Arch.Biochem.Biophys. 2005 442 169 179 1RLM 15657928 Crystal Structure of ybiV from Escherichia coli K12 2003-11-26 2004-12-07 Roberts, A.,Lee, S.Y.,McCullagh, E.,Silversmith, R.E.,Wemmer, D.E. Ybiv from Escherichia coli K12 is a HAD phosphatase. Proteins 2005 58 790 801 1RLO 15657928 Phospho-aspartyl Intermediate Analogue of ybiV from E. coli K12 2003-11-26 2004-12-07 Roberts, A.,Lee, S.Y.,McCullagh, E.,Silversmith, R.E.,Wemmer, D.E. Ybiv from Escherichia coli K12 is a HAD phosphatase. Proteins 2005 58 790 801 1RLT 15657928 Transition State Analogue of ybiV from E. coli K12 2003-11-26 2004-12-07 Roberts, A.,Lee, S.Y.,McCullagh, E.,Silversmith, R.E.,Wemmer, D.E. Ybiv from Escherichia coli K12 is a HAD phosphatase. Proteins 2005 58 790 801 1S12 16242963 Crystal structure of TM1457 2004-01-05 2004-12-07 Shin, D.H.,Lou, Y.,Jancarik, J.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of TM1457 from Thermotoga maritima. J.Struct.Biol. 2005 152 113 117 1T70 17847097 Crystal structure of a novel phosphatase from Deinococcus radiodurans 2004-05-07 2004-12-07 Shin, D.H.,Proudfoot, M.,Lim, H.J.,Choi, I.K.,Yokota, H.,Yakunin, A.F.,Kim, R.,Kim, S.H. Structural and enzymatic characterization of DR1281: A calcineurin-like phosphoesterase from Deinococcus radiodurans. Proteins 2008 70 1000 1009 1T72 15937186 Crystal structure of phosphate transport system protein phoU from Aquifex aeolicus 2004-05-07 2004-12-07 Oganesyan, V.,Oganesyan, N.,Adams, P.D.,Jancarik, J.,Yokota, H.A.,Kim, R.,Kim, S.H. Crystal structure of the ""PhoU-like"" phosphate uptake regulator from Aquifex aeolicus. J.Bacteriol. 2005 187 4238 4244 1T8B 15937186 Crystal structure of refolded PHOU-like protein (gi 2983430) from Aquifex aeolicus 2004-05-11 2004-12-07 Oganesyan, V.,Oganesyan, N.,Adams, P.D.,Jancarik, J.,Yokota, H.A.,Kim, R.,Kim, S.H. Crystal structure of the ""PhoU-like"" phosphate uptake regulator from Aquifex aeolicus. J.Bacteriol. 2005 187 4238 4244 1TD6 15562512 Crystal structure of the conserved hypothetical protein MP506/MPN330 (gi: 1674200)from Mycoplasma pneumoniae 2004-05-21 2004-12-07 Das, D.,Oganesyan, N.,Yokota, H.,Pufan, R.,Kim, R.,Kim, S.H. Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae. Proteins 2004 58 504 508 1XZX 15466465 Thyroxine-Thyroid Hormone Receptor Interactions 2004-11-12 2004-12-07 Sandler, B.,Webb, P.,Apriletti, J.W.,Huber, B.R.,Togashi, M.,Cunha Lima, S.T.,Juric, S.,Nilsson, S.,Wagner, R.,Fletterick, R.J.,Baxter, J.D. Thyroxine-thyroid hormone receptor interactions. J.Biol.Chem. 2004 279 55801 55808 1Y0X 15466465 Thyroxine-Thyroid Hormone Receptor Interactions 2004-11-16 2004-12-07 Sandler, B.,Webb, P.,Apriletti, J.W.,Huber, B.R.,Togashi, M.,Cunha Lima, S.T.,Juric, S.,Nilsson, S.,Wagner, R.,Fletterick, R.J.,Baxter, J.D. Thyroxine-thyroid hormone receptor interactions. J.Biol.Chem. 2004 279 55801 55808 1U6G 15537541 Crystal Structure of The Cand1-Cul1-Roc1 Complex 2004-07-29 2004-12-14 Goldenberg, S.J.,Cascio, T.C.,Shumway, S.D.,Garbutt, K.C.,Liu, J.,Xiong, Y.,Zheng, N. Structure of the Cand1-Cul1-Roc1 complex reveals regulatory mechanisms for the assembly of the multisubunit cullin-dependent ubiquitin ligases Cell(Cambridge,Mass.) 2004 119 517 528 1VPZ 16104018 Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution 2004-11-24 2004-12-14 Rife, C.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Paulsen, J.,Quijano, K.,Reyes, R.,Sims, E.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,White, A.,Wolf, G.,Xu, Q.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold. Proteins 2005 61 449 453 1VPZ 16104018 Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution 2004-11-24 2004-12-14 Rife, C.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Paulsen, J.,Quijano, K.,Reyes, R.,Sims, E.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,White, A.,Wolf, G.,Xu, Q.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold. Proteins 2005 61 449 453 1X7H 15544323 Actinorhodin Polyketide Ketoreductase, with NADPH bound 2004-08-13 2004-12-14 Korman, T.P.,Hill, J.A.,Vu, T.N.,Tsai, S.C. Structural analysis of actinorhodin polyketide ketoreductase: cofactor binding and substrate specificity Biochemistry 2004 43 14529 14538 1SI5 15218027 Protease-like domain from 2-chain hepatocyte growth factor 2004-02-27 2004-12-28 Kirchhofer, D.,Yao, X.,Peek, M.,Eigenbrot, C.,Lipari, M.T.,Billeci, K.L.,Maun, H.R.,Moran, P.,Santell, L.,Wiesmann, C.,Lazarus, R.A. Structural and functional basis of the serine protease-like hepatocyte growth factor beta-chain in Met binding and signaling J.Biol.Chem. 2004 279 39915 39924 1VQR 16287129 Crystal structure of a virulence factor (cj0248) from campylobacter jejuni subsp. jejuni at 2.25 A resolution 2004-12-17 2004-12-28 Xu, Q.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Agarwalla, S.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Paulsen, J.,Quijano, K.,Reyes, R.,Rife, C.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,White, A.,Wolf, G.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold. Proteins 2006 62 292 296 1S1E 14980207 Crystal Structure of Kv Channel-interacting protein 1 (KChIP-1) 2004-01-06 2005-01-11 Scannevin, R.H.,Wang, K.-W.,Jow, F.,Megules, J.,Kopsco, D.C.,Edris, W.,Carroll, K.C.,Xu, W.-X.,Xu, Z.-B.,Katz, A.H.,Olland, S.,Lin, L.,Taylor, M.,Stahl, M.,Malakian, K.,Somers, W.,Mosyak, L.,Bowlby, M.R.,Chanda, P.,Rhodes, K.J. Two N-terminal domains of Kv4 K(+) channels regulate binding to and modulation by KChIP1. Neuron 2004 41 587 598 1YFQ 15644329 High resolution S. cerevisiae Bub3 mitotic checkpoint protein 2005-01-03 2005-01-11 Wilson, D.K.,Cerna, D.,Chew, E. The 1.1-a structure of the spindle checkpoint protein bub3p reveals functional regions. J.Biol.Chem. 2005 280 13944 13951 1X71 15642259 Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with TRENCAM-3,2-HOPO, a cepabactin analogue 2004-08-12 2005-01-18 Holmes, M.A.,Paulsene, W.,Jide, X.,Ratledge, C.,Strong, R.K. Siderocalin (Lcn 2) Also Binds Carboxymycobactins, Potentially Defending against Mycobacterial Infections through Iron Sequestration Structure 2005 13 29 41 1YI4 15657054 Structure of Pim-1 bound to adenosine 2005-01-11 2005-01-25 Jacobs, M.D.,Black, J.,Futer, O.,Swenson, L.,Hare, B.,Fleming, M.,Saxena, K. Pim-1 ligand-bound structures reveal the mechanism of serine/threonine kinase inhibition by LY294002. J.Biol.Chem. 2005 280 13728 13734 1PK1 15905166 Hetero SAM domain structure of Ph and Scm. 2003-06-04 2005-02-15 Kim, C.A.,Sawaya, M.R.,Cascio, D.,Kim, W.,Bowie, J.U. Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer. J.Biol.Chem. 2005 280 27769 27775 1VQZ Crystal structure of a putative lipoate-protein ligase a (sp_1160) from streptococcus pneumoniae tigr4 at 1.99 A resolution 2005-01-21 2005-02-15 Joint Center for Structural Genomics (JCSG) Crystal structure of putative Lipoate-protein ligase (np_345629.1) from Streptococcus pneumoniae tigr4 at 1.99 A resolution To be published 0 0 0 0 1VR3 16783794 Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution 2005-01-28 2005-02-15 Xu, Q.,Schwarzenbacher, R.,Krishna, S.S.,McMullan, D.,Agarwalla, S.,Quijano, K.,Abdubek, P.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Elsliger, M.A.,Grittini, C.,Grzechnik, S.K.,DiDonato, M.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Klock, H.E.,Knuth, M.W.,Koesema, E.,Kreusch, A.,Kuhn, P.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Paulsen, J.,Reyes, R.,Rife, C.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,White, A.,Wolf, G.,Hodgson, K.O.,Wooley, J.,Deacon, A.M.,Godzik, A.,Lesley, S.A.,Wilson, I.A. Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution. Proteins 2006 64 808 813 1YC0 15713485 short form HGFA with first Kunitz domain from HAI-1 2004-12-21 2005-02-15 Shia, S.,Stamos, J.,Kirchhofer, D.,Fan, B.,Wu, J.,Corpuz, R.T.,Santell, L.,Lazarus, R.A.,Eigenbrot, C. Conformational lability in serine protease active sites: structures of hepatocyte growth factor activator (HGFA) alone and with the inhibitory domain from HGFA inhibitor-1B. J.Mol.Biol. 2005 346 1335 1349 1XVW 15701515 Crystal Structure of AhpE from Mycobacterium tuberculosis, a 1-Cys peroxiredoxin 2004-10-28 2005-02-22 Li, S.,Peterson, N.A.,Kim, M.Y.,Kim, C.Y.,Hung, L.W.,Yu, M.,Lekin, T.,Segelke, B.W.,Lott, J.S.,Baker, E.N. Crystal Structure of AhpE from Mycobacterium tuberculosis, a 1-Cys Peroxiredoxin J.Mol.Biol. 2005 346 1035 1046 1XXU 15701515 Crystal Structure of AhpE from Mycrobacterium tuberculosis, a 1-Cys peroxiredoxin 2004-11-08 2005-02-22 Li, S.,Peterson, N.A.,Kim, M.Y.,Kim, C.Y.,Hung, L.W.,Yu, M.,Lekin, T.,Segelke, B.W.,Lott, J.S.,Baker, E.N. Crystal Structure of AhpE from Mycobacterium tuberculosis, a 1-Cys Peroxiredoxin J.Mol.Biol. 2005 346 1035 1046 1U9E 15548008 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH WAY-397 2004-08-09 2005-03-01 Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Malamas, M.S.,Miller, C.P.,Harris, H.A.,Hsiao, C.,Akopian, T.,Hum, W.T.,Malakian, K.,Wolfrom, S.,Bapat, A.,Bhat, R.A.,Stahl, M.L.,Somers, W.S.,Alvarez, J.C. Structure-Based Design Of Estrogen Receptor-beta Selective Ligands J.Am.Chem.Soc. 2004 126 15106 15119 1X76 15548008 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH WAY-697 2004-08-13 2005-03-01 Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Malamas, M.S.,Miller, C.P.,Harris, H.A.,Hsiao, C.,Akopian, T.,Hum, W.T.,Malakian, K.,Wolfrom, S.,Bapat, A.,Bhat, R.A.,Stahl, M.L.,Somers, W.S.,Alvarez, J.C. Structure-Based Design of Estrogen Receptor-Beta Selective Ligands J.Am.Chem.Soc. 2004 126 15106 15119 1X78 15548008 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH WAY-244 2004-08-13 2005-03-01 Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Malamas, M.S.,Miller, C.P.,Harris, H.A.,Hsiao, C.,Akopian, T.,Hum, W.T.,Malakian, K.,Wolfrom, S.,Bapat, A.,Bhat, R.A.,Stahl, M.L.,Somers, W.S.,Alvarez, J.C. Structure-Based Design of Estrogen Receptor-Beta Selective Ligands J.Am.Chem.Soc. 2004 126 15106 15119 1X7B 15548008 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH ERB-041 2004-08-13 2005-03-01 Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Malamas, M.S.,Miller, C.P.,Harris, H.A.,Hsiao, C.,Akopian, T.,Hum, W.T.,Malakian, K.,Wolfrom, S.,Bapat, A.,Bhat, R.A.,Stahl, M.L.,Somers, W.S.,Alvarez, J.C. Structure-Based Design of Estrogen Receptor-Beta Selective Ligands J.Am.Chem.Soc. 2004 126 15106 15119 1X7E 15548008 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR ALPHA COMPLEXED WITH WAY-244 2004-08-13 2005-03-01 Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Malamas, M.S.,Miller, C.P.,Harris, H.A.,Hsiao, C.,Akopian, T.,Hum, W.T.,Malakian, K.,Wolfrom, S.,Bapat, A.,Bhat, R.A.,Stahl, M.L.,Somers, W.S.,Alvarez, J.C. Structure-Based Design of Estrogen Receptor-Beta Selective Ligands J.Am.Chem.Soc. 2004 126 15106 15119 1X7J 15576033 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH GENISTEIN 2004-08-14 2005-03-01 Manas, E.S.,Xu, Z.B.,Unwalla, R.J.,Somers, W.S. Understanding the Selectivity of Genistein for Human Estrogen Receptor-Beta Using X-Ray Crystallography and Computational Methods Structure 2004 12 2197 2207 1X7R 15576033 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR ALPHA COMPLEXED WITH GENISTEIN 2004-08-16 2005-03-01 Manas, E.S.,Xu, Z.B.,Unwalla, R.J.,Somers, W.S. Understanding the Selectivity of Genistein for Human Estrogen Receptor-Beta Using X-Ray Crystallography and Computational Methods Structure 2004 12 2197 2207 1VR6 Crystal structure of Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase) (TM0343) from Thermotoga Maritima at 1.92 A resolution 2005-02-14 2005-03-08 Joint Center for Structural Genomics (JCSG) Crystal structure of Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase) (TM0343) from Thermotoga Maritima at 1.92 A resolution To be published 0 0 0 0 1YOV 12646924 Insights into the Ubiquitin Transfer Cascade from the refined structure of the activating enzyme for NEDD8 2005-01-28 2005-03-08 Walden, H.,Podgorski, M.S.,Schulman, B.A. Insights into the Ubiquitin Transfer Cascade from the refined structure of the activating enzyme for NEDD8 Nature 2003 422 330 334 1YTD 15753098 Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum, Native Structure 2005-02-10 2005-03-08 Shin, D.H.,Oganesyan, N.,Jancarik, J.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J.Biol.Chem. 2005 280 18326 18335 1YTE 15753098 Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum, phosphoribosylpyrophosphate bound structure 2005-02-10 2005-03-08 Shin, D.H.,Oganesyan, N.,Jancarik, J.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J.Biol.Chem. 2005 280 18326 18335 1YTK 15753098 Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum with nicotinate mononucleotide 2005-02-10 2005-03-08 Shin, D.H.,Oganesyan, N.,Jancarik, J.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J.Biol.Chem. 2005 280 18326 18335 1SJI 14871888 Comparing skeletal and cardiac calsequestrin structures and their calcium binding: a proposed mechanism for coupled calcium binding and protein polymerization 2004-03-03 2005-03-15 Park, H.J.,Park, I.Y.,Kim, E.J.,Youn, B.,Fields, K.,Dunker, A.K.,Kang, C.H. Comparing skeletal and cardiac calsequestrin structures and their calcium binding: a proposed mechanism for coupled calcium binding and protein polymerization. J.Biol.Chem. 2004 279 18026 18033 1YYR 15835903 Y305F Trichodiene Synthase: Complex With Mg, Pyrophosphate, and (4R)-7-azabisabolene 2005-02-25 2005-03-29 Vedula, L.S.,Rynkiewicz, M.J.,Pyun, H.J.,Coates, R.M.,Cane, D.E.,Christianson, D.W. Molecular Recognition of the Substrate Diphosphate Group Governs Product Diversity in Trichodiene Synthase Mutants. Biochemistry 2005 44 6153 6163 1T2B 15260491 Crystal Structure of cytochrome P450cin complexed with its substrate 1,8-cineole 2004-04-20 2005-04-26 Meharenna, Y.T.,Li, H.,Hawkes, D.B.,Pearson, A.G.,De Voss, J.,Poulos, T.L. Crystal structure of P450cin in a complex with its substrate, 1,8-cineole, a close structural homologue to D-camphor, the substrate for P450cam Biochemistry 2004 43 9487 9494 1YQJ 15837335 Crystal Structure of p38 Alpha in Complex with a Selective Pyridazine Inhibitor 2005-02-01 2005-04-26 Tamayo, N.,Liao, L.,Goldberg, M.,Powers, D.,Tudor, Y.Y.,Yu, V.,Wong, L.M.,Henkle, B.,Middleton, S.,Syed, R.,Harvey, T.,Jang, G.,Hungate, R.,Dominguez, C. Design and synthesis of potent pyridazine inhibitors of p38 MAP kinase. Bioorg.Med.Chem.Lett. 2005 15 2409 2413 1Z6K 17064730 Citrate lyase beta subunit complexed with oxaloacetate and magnesium from M. tuberculosis 2005-03-22 2005-05-03 Goulding, C.W.,Bowers, P.M.,Segelke, B.,Lekin, T.,Kim, C.Y.,Terwilliger, T.C.,Eisenberg, D. The structure and computational analysis of Mycobacterium tuberculosis protein CitE suggest a novel enzymatic function. J.Mol.Biol. 2007 365 275 283 1T7I 15771427 The structural and thermodynamic basis for the binding of TMC114, a next-generation HIV-1 protease inhibitor. 2004-05-10 2005-05-10 Surleraux, D.L.N.G.,Tahri, A.,Verschueren, W.G.,Pille, G.M.E.,de Kock, H.A.,Jonckers, T.H.M.,Peeters, A.,De Meyer, S.,Azijn, H.,Pauwels, R.,de Bethune, M.-P.,King, N.M.,Prabu-Jeyabalan, M.,Schiffer, C.A.,Wigerinck, P.B.T.P. Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor J.Med.Chem. 2005 48 1813 1822 1ZA6 15854653 The structure of an antitumor CH2-domain-deleted humanized antibody 2005-04-05 2005-05-10 Larson, S.B.,Day, J.S.,Glaser, S.,Braslawsky, G.,McPherson, A. The Structure of an Antitumor C(H)2-domain-deleted Humanized Antibody. J.Mol.Biol. 2005 348 1177 1190 1U7D 15840835 crystal structure of apo M. jannashii tyrosyl-tRNA synthetase 2004-08-03 2005-05-17 Zhang, Y.,Wang, L.,Schultz, P.G.,Wilson, I.A. Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine. Protein Sci. 2005 14 1340 1349 1Y5M 15865440 The crystal structure of murine 11b-hydroxysteroid dehydrogenase: an important therapeutic target for diabetes 2004-12-02 2005-05-17 Zhang, J.,Osslund, T.D.,Plant, M.H.,Clogston, C.L.,Nybo, R.E.,Xiong, F.,Delaney, J.M.,Jordan, S.R. Crystal Structure of Murine 11-Hydroxysteroid Dehydrogenase 1: An Important Therapeutic Target for Diabetes Biochemistry 2005 44 6948 6957 1Y5R 15865440 The crystal structure of murine 11b-hydroxysteroid dehydrogenase complexed with corticosterone 2004-12-02 2005-05-17 Zhang, J.,Osslund, T.D.,Plant, M.H.,Clogston, C.L.,Nybo, R.E.,Xiong, F.,Delaney, J.M.,Jordan, S. 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Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis Embo Rep. 2005 6 681 687 1TWN 15522396 Crystal structures of ferrous and ferrous-NO forms of verdoheme in a complex with human heme oxygenase-1: catalytic implications for heme cleavage 2004-07-01 2005-07-05 Lad, L.,Ortiz de Montellano, P.R.,Poulos, T.L. Crystal structures of ferrous and ferrous-NO forms of verdoheme in a complex with human heme oxygenase-1: catalytic implications for heme cleavage. J.Inorg.Biochem. 2004 98 1686 1695 1TWR 15522396 Crystal structures of ferrous and ferrous-NO forms of verdoheme in a complex with human heme oxygenase-1: catalytic implications for heme cleavage 2004-07-01 2005-07-05 Lad, L.,Ortiz de Montellano, P.R.,Poulos, T.L. Crystal structures of ferrous and ferrous-NO forms of verdoheme in a complex with human heme oxygenase-1: catalytic implications for heme cleavage. J.Inorg.Biochem. 2004 98 1686 1695 1ZXJ 16204885 Crystal structure of the hypthetical Mycoplasma protein, MPN555 2005-06-08 2005-07-26 Schulze-Gahmen, U.,Aono, S.,Chen, S.,Yokota, H.,Kim, R.,Kim, S.H. Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function. Acta Crystallogr.,Sect.D 2005 61 1343 1347 1ZZ8 16015285 Crystal Structure of FeII HppE in Complex with Substrate Form 2 2005-06-13 2005-07-26 Higgins, L.J.,Yan, F.,Liu, P.,Liu, H.W.,Drennan, C.L. Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme Nature 2005 437 838 844 2AEX 16176984 The 1.58A Crystal Structure of Human Coproporphyrinogen Oxidase Reveals the Structural Basis of Hereditary Coproporphyria 2005-07-24 2005-08-02 Lee, D.S.,Flachsova, E.,Bodnarova, M.,Demeler, B.,Martasek, P.,Raman, C.S. Structural basis of hereditary coproporphyria. Proc.Natl.Acad.Sci.USA 2005 102 14232 14237 1T6M 16042375 X-ray Structure of the R70D PI-PLC enzyme: Insight into the role of calcium and surrounding amino acids on active site geometry and catalysis. 2004-05-06 2005-08-16 Apiyo, D.,Zhao, L.,Tsai, M.-D.,Selby, T.L. X-ray Structure of the R69D Phosphatidylinositol-Specific Phospholipase C Enzyme: Insight into the Role of Calcium and Surrounding Amino Acids in Active Site Geometry and Catalysis. Biochemistry 2005 44 9980 9989 1YEP 16060667 Structural and biochemical analysis of the link between enzymatic activity and olgomerization in AhpC, a bacterial peroxiredoxin. 2004-12-28 2005-08-16 Parsonage, D.,Youngblood, D.S.,Sarma, G.N.,Wood, Z.A.,Karplus, P.A.,Poole, L.B. Analysis of the Link between Enzymatic Activity and Oligomeric State in AhpC, a Bacterial Peroxiredoxin. 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The structure of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis reveals a common catalytic scaffold and ancestry for type I and type II enzymes J.Mol.Biol. 2005 354 927 939 2ESM 16249185 Crystal Structure of ROCK 1 bound to fasudil 2005-10-26 2005-11-08 Jacobs, M.,Hayakawa, K.,Swenson, L.,Bellon, S.,Fleming, M.,Taslimi, P.,Doran, J. The Structure of Dimeric ROCK I Reveals the Mechanism for Ligand Selectivity. J.Biol.Chem. 2006 281 260 268 2ETK 16249185 Crystal Structure of ROCK 1 bound to hydroxyfasudil 2005-10-27 2005-11-08 Jacobs, M.,Hayakawa, K.,Swenson, L.,Bellon, S.,Fleming, M.,Taslimi, P.,Doran, J. The Structure of Dimeric ROCK I Reveals the Mechanism for Ligand Selectivity. J.Biol.Chem. 2006 281 260 268 1Y5H 18640126 Crystal structure of truncated Se-Met Hypoxic Response Protein I (HRPI) 2004-12-02 2005-11-15 Sharpe, M.L.,Gao, C.,Kendall, S.L.,Baker, E.N.,Lott, J.S. The structure and unusual protein chemistry of hypoxic response protein 1, a latency antigen and highly expressed member of the DosR regulon in Mycobacterium tuberculosis J.Mol.Biol. 2008 383 822 836 2APO 16286935 Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex 2005-08-16 2005-11-15 Hamma, T.,Reichow, S.L.,Varani, G.,Ferre-D'Amare, A.R. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat.Struct.Mol.Biol. 2005 12 1101 1107 2B7M 16359701 Crystal Structure of the S. cerevisiae Exocyst Component Exo70p 2005-10-04 2005-11-15 Hamburger, Z.A.,Hamburger, A.E.,West, A.P.,Weis, W.I. Crystal Structure of the S.cerevisiae Exocyst Component Exo70p J.Mol.Biol. 2006 356 9 21 2F0A Crystal Structure of Monomeric Uncomplexed form of Xenopus dishevelled PDZ domain 2005-11-12 2005-11-22 Friedland, N.,Hung, L.-W.,Cheyette, B.,Miller, J.R.,Moon, R.T.,Earnest, T.N. Conformational flexibility in the PDZ domain of Dishevelled induced by target binding TO BE PUBLISHED 0 0 0 0 1ZZR 16285725 Rat nNOS D597N/M336V double mutant with L-N(omega)-Nitroarginine-(4R)-amino-L-proline amide bound 2005-06-14 2005-12-06 Li, H.,Flinspach, M.L.,Igarashi, J.,Jamal, J.,Yang, W.,Litzinger, E.A.,Huang, H.,Erdal, E.P.,Silverman, R.B.,Poulos, T.L. Exploring the Binding Conformations of Bulkier Dipeptide Amide Inhibitors in Constitutive Nitric Oxide Synthases. Biochemistry 2005 44 15222 15229 1ZZU 16285725 Rat nNOS D597N/M336V double mutant with L-N(omega)-Nitroarginine-2,4-L-Diaminobutyric Amide Bound 2005-06-14 2005-12-06 Li, H.,Flinspach, M.L.,Igarashi, J.,Jamal, J.,Yang, W.,Litzinger, E.A.,Huang, H.,Erdal, E.P.,Silverman, R.B.,Poulos, T.L. Exploring the Binding Conformations of Bulkier Dipeptide Amide Inhibitors in Constitutive Nitric Oxide Synthases. Biochemistry 2005 44 15222 15229 2AQ5 16407068 Crystal Structure of Murine Coronin-1 2005-08-17 2005-12-06 Appleton, B.A.,Wu, P.,Wiesmann, C. The crystal structure of murine coronin-1: a regulator of actin cytoskeletal dynamics in lymphocytes. Structure 2006 14 87 96 2AQX 16262249 Crystal Structure of the Catalytic and CaM-Binding domains of Inositol 1,4,5-Trisphosphate 3-Kinase B 2005-08-18 2005-12-06 Chamberlain, P.P.,Sandberg, M.L.,Sauer, K.,Cooke, M.P.,Lesley, S.A.,Spraggon, G. Structural insights into enzyme regulation for inositol 1,4,5-trisphosphate 3-kinase B Biochemistry 2005 44 14486 14493 1YAX 16406409 Cystal structure Analysis of S.typhimurium PhoQ sensor domain with Calcium 2004-12-17 2005-12-27 Cho, U.S.,Bader, M.W.,Amaya, M.F.,Daley, M.E.,Klevit, R.E.,Miller, S.I.,Xu, W. Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling. J.Mol.Biol. 2006 356 1193 1206 2AWZ 16451069 Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5h) 2005-09-02 2006-01-24 Powers, J.P.,Piper, D.E.,Li, Y.,Mayorga, V.,Anzola, J.,Chen, J.M.,Jaen, J.C.,Lee, G.,Liu, J.,Peterson, M.G.,Tonn, G.R.,Ye, Q.,Walker, N.P.,Wang, Z. SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem. 2006 49 1034 1046 2AX0 16451069 Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5x) 2005-09-02 2006-01-24 Powers, J.P.,Piper, D.E.,Li, Y.,Mayorga, V.,Anzola, J.,Chen, J.M.,Jaen, J.C.,Lee, G.,Liu, J.,Peterson, M.G.,Tonn, G.R.,Ye, Q.,Walker, N.P.,Wang, Z. SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem. 2006 49 1034 1046 2AX1 16451069 Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5ee) 2005-09-02 2006-01-24 Powers, J.P.,Piper, D.E.,Li, Y.,Mayorga, V.,Anzola, J.,Chen, J.M.,Jaen, J.C.,Lee, G.,Liu, J.,Peterson, M.G.,Tonn, G.R.,Ye, Q.,Walker, N.P.,Wang, Z. SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem. 2006 49 1034 1046 2FR2 Crystal Structure of Rv2717c from M. tuberculosis 2006-01-18 2006-01-31 Hung, L.W.,Yu, M.,Bursey, E.H.,Radhakannan, T.,Segelke, B.W.,Lekin, T.,Chang, Y.B.,Terwilliger, T.C.,Kaviratne, A.,Woodruff, T. Crystal structure of Rv2717c from Mycobacterium tuberculosis To be Published 0 0 0 0 2FJF 16373345 Structure of the G6 Fab, a phage derived VEGF binding Fab 2006-01-02 2006-02-07 Fuh, G.,Wu, P.,Liang, W.C.,Ultsch, M.,Lee, C.V.,Moffat, B.,Wiesmann, C. Structure-function studies of two synthetic anti-vascular endothelial growth factor Fabs and comparison with the Avastin Fab. J.Biol.Chem. 2006 281 6625 6631 2FSX Crystal structure of Rv0390 from M. tuberculosis 2006-01-23 2006-02-07 Bursey, E.H.,Radhakannan, T.,Yu, M.,Segelke, B.W.,Lekin, T.,Toppani, D.,Chang, Y.-B.,Kaviratne, T.,Woodruff, T.,Terwilliger, T.C.,Hung, L.-W. Crystal Structure of Rv0390 from Mycobacterium tuberculosis To be Published 0 0 0 0 2FVH Crystal Structure of Rv1848, a Urease Gamma Subunit UreA (Urea amidohydrolase), from Mycobacterium Tuberculosis 2006-01-30 2006-02-07 Bursey, E.H.,Yu, M.,Segelke, B.W.,Lekin, T.,Rupp, B.,Kim, C.Y.,Rho, B.S.,Terwilliger, T.C.,Hung, L.-W. 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Structure 2006 14 205 216 2AJZ 16472740 Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with ecgonine methyl ester 2005-08-02 2006-02-14 Zhu, X.,Dickerson, T.J.,Rogers, C.J.,Kaufmann, G.F.,Mee, J.M.,McKenzie, K.M.,Janda, K.D.,Wilson, I.A. Complete reaction cycle of a cocaine catalytic antibody at atomic resolution. Structure 2006 14 205 216 2FGG Crystal Structure of Rv2632c 2005-12-21 2006-02-14 Yu, M.,Bursey, E.H.,Radhakannan, T.,Segelke, B.W.,Lekin, T.,Toppani, D.,Kim, C.Y.,Kaviratne, T.,Woodruff, T.,Terwilliger, T.C.,Hung, L.W. 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Biochemistry 2006 45 5964 5973 2FX3 16552145 Crystal Structure Determination of E. coli Elongation Factor, Tu using a Twinned Data Set 2006-02-03 2006-03-28 Heffron, S.E.,Moeller, R.,Jurnak, F. Solving the structure of Escherichia coli elongation factor Tu using a twinned data set. Acta Crystallogr.,Sect.D 2006 62 433 438 2G2D Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis 2006-02-15 2006-03-28 Moon, J.H.,Kaviratne, A.,Yu, M.,Bursey, E.H.,Hung, L.-W.,Lekin, T.P.,Segelke, B.W.,Terwilliger, T.C.,Kim, C.-Y. Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis. To be Published 0 0 0 0 2G2D Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis 2006-02-15 2006-03-28 Moon, J.H.,Kaviratne, A.,Yu, M.,Bursey, E.H.,Hung, L.-W.,Lekin, T.P.,Segelke, B.W.,Terwilliger, T.C.,Kim, C.-Y. 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Biochemistry 2006 45 4421 4428 2FLB 16487703 Discovery of a Novel Hydroxy Pyrazole Based Factor IXa Inhibitor 2006-01-05 2006-04-04 Vijaykumar, D.,Sprengeler, P.A.,Shaghafi, M.,Spencer, J.R.,Katz, B.A.,Yu, C.,Rai, R.,Young, W.B.,Schultz, B.,Janc, J. Discovery of novel hydroxy pyrazole based factor IXa inhibitor. Bioorg.Med.Chem.Lett. 2006 16 2796 2799 1ZAF 15876535 Crystal structure of estrogen receptor beta complexed with 3-Bromo-6-hydroxy-2-(4-hydroxy-phenyl)-inden-1-one 2005-04-06 2006-04-11 McDevitt, R.E.,Malamas, M.S.,Manas, E.S.,Unwalla, R.J.,Xu, Z.B.,Miller, C.P.,Harris, H.A. Estrogen receptor ligands: design and synthesis of new 2-arylindene-1-ones Bioorg.Med.Chem.Lett. 2005 15 3137 3142 2EUP 16490206 Cytochrome c peroxidase (CCP) in complex with 2-amino-5-picoline 2005-10-29 2006-04-11 Brenk, R.,Vetter, S.W.,Boyce, S.E.,Goodin, D.B.,Shoichet, B.K. Probing molecular docking in a charged model binding site. 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Probing molecular docking in a charged model binding site. J.Mol.Biol. 2006 357 1449 1470 2EUU 16490206 Cytochrome c peroxidase (CCP) in complex with 1H-imidazol-2-ylmethanol 2005-10-29 2006-04-11 Brenk, R.,Vetter, S.W.,Boyce, S.E.,Goodin, D.B.,Shoichet, B.K. Probing molecular docking in a charged model binding site. J.Mol.Biol. 2006 357 1449 1470 2FWR 16600867 Structure of Archaeoglobus Fulgidis XPB 2006-02-02 2006-04-18 Fan, L.,Arvai, A.S.,Cooper, P.K.,Iwai, S.,Hanaoka, F.,Tainer, J.A. Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair Mol.Cell 2006 22 27 37 2FZ4 16600867 Crystal Structure of the N-terminal half of Archaeoglobus Fulgidus XPB 2006-02-09 2006-04-18 Fan, L.,Arvai, A.S.,Cooper, P.K.,Iwai, S.,Hanaoka, F.,Tainer, J.A. Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair. Mol.Cell 2006 22 27 37 2GM8 TenA Homolog/Thi-4 Thiaminase complexed with product 4-amino-5-hydroxymethyl-2-methylpyrimidine 2006-04-06 2006-04-18 Sawaya, M.R.,Chan, S.,Han, G.W.,Pashkov, I.,Perry, L.J.,Yeates, T.O. Crystal Structure of a TenA Homolog/Thi-4 Thiaminase from Pyrobaculum Aerophilum To be Published 0 0 0 0 2FBT 16622405 WRN exonuclease 2005-12-10 2006-04-25 Perry, J.J.,Yannone, S.M.,Holden, L.G.,Hitomi, C.,Asaithamby, A.,Han, S.,Cooper, P.K.,Chen, D.J.,Tainer, J.A. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol. 2006 13 414 422 2FBV 16622405 WRN exonuclease, Mn complex 2005-12-10 2006-04-25 Perry, J.J.,Yannone, S.M.,Holden, L.G.,Hitomi, C.,Asaithamby, A.,Han, S.,Cooper, P.K.,Chen, D.J.,Tainer, J.A. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol. 2006 13 414 422 2FBX 16622405 WRN exonuclease, Mg complex 2005-12-10 2006-04-25 Perry, J.J.,Yannone, S.M.,Holden, L.G.,Hitomi, C.,Asaithamby, A.,Han, S.,Cooper, P.K.,Chen, D.J.,Tainer, J.A. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol. 2006 13 414 422 2FBY 16622405 WRN exonuclease, Eu complex 2005-12-10 2006-04-25 Perry, J.J.,Yannone, S.M.,Holden, L.G.,Hitomi, C.,Asaithamby, A.,Han, S.,Cooper, P.K.,Chen, D.J.,Tainer, J.A. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol. 2006 13 414 422 2FC0 16622405 WRN exonuclease, Mn dGMP complex 2005-12-10 2006-04-25 Perry, J.J.,Yannone, S.M.,Holden, L.G.,Hitomi, C.,Asaithamby, A.,Han, S.,Cooper, P.K.,Chen, D.J.,Tainer, J.A. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol. 2006 13 414 422 2A6P 16672613 Structure Solution to 2.2 Angstrom and Functional Characterisation of the Open Reading Frame Rv3214 from Mycobacterium tuberculosis 2005-07-03 2006-05-16 Watkins, H.A.,Baker, E.N. Structural and Functional Analysis of Rv3214 from Mycobacterium tuberculosis, a Protein with Conflicting Functional Annotations, Leads to Its Characterization as a Phosphatase. J.Bacteriol. 2006 188 3589 3599 2EX5 16698548 Group I Intron-encoded Homing Endonuclease I-CeuI Complexed With DNA 2005-11-07 2006-05-23 Spiegel, P.C.,Chevalier, B.,Sussman, D.,Turmel, M.,Lemieux, C.,Stoddard, B.L. The structure of I-CeuI homing endonuclease: Evolving asymmetric DNA recognition from a symmetric protein scaffold. Structure 2006 14 869 880 2F8N 2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes 2005-12-02 2006-05-23 Chakravarthy, S.,Luger, K. Nucleosomes containing the histone domain of macroH2A: In vitro possibilities. To be Published 0 0 0 0 2GWR 17511470 Crystal structure of the response regulator protein mtrA from Mycobacterium Tuberculosis 2006-05-05 2006-05-23 Friedland, N.,Mack, T.R.,Yu, M.,Hung, L.W.,Terwilliger, T.C.,Waldo, G.S.,Stock, A.M. Domain orientation in the inactive response regulator Mycobacterium tuberculosis MtrA provides a barrier to activation. Biochemistry 2007 46 6733 6743 2G19 16782814 Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2) 2006-02-14 2006-06-13 McDonough, M.A.,Li, V.,Flashman, E.,Chowdhury, R.,Mohr, C.,Lienard, B.M.,Zondlo, J.,Oldham, N.J.,Clifton, I.J.,Lewis, J.,McNeill, L.A.,Kurzeja, R.J.,Hewitson, K.S.,Yang, E.,Jordan, S.,Syed, R.S.,Schofield, C.J. Cellular oxygen sensing: Crystal structure of hypoxia-inducible factor prolyl hydroxylase (PHD2). 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Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the Biochim.Biophys.Acta 0 1757 1073 1083 2H6K 16829959 Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex 2006-05-31 2006-07-04 Ruthenburg, A.J.,Wang, W.-K.,Graybosch, D.M.,Li, H.,Allis, C.D.,Patel, D.J.,Verdine, G.L. Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat.Struct.Mol.Biol. 2006 13 704 712 2H6N 16829959 Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex 2006-05-31 2006-07-04 Ruthenburg, A.J.,Wang, W.-K.,Graybosch, D.M.,Li, H.,Allis, C.D.,Patel, D.J.,Verdine, G.L. Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. 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Crystal Structure of a zinc ion bound Nicotinate Phosphoribosyltransferase from Thermoplasma acidophilum To be Published 0 0 0 0 2FNT 16537628 Crystal structure of a drug-resistant (V82A) inactive (D25N) HIV-1 protease complexed with AP2V variant of HIV-1 NC-p1 substrate. 2006-01-11 2006-09-05 Prabu-Jeyabalan, M.,Nalivaika, E.A.,Romano, K.,Schiffer, C.A. Mechanism of substrate recognition by drug-resistant human immunodeficiency virus type 1 protease variants revealed by a novel structural intermediate. J.Virol. 2006 80 3607 3616 2G5F 16923875 The structure of MbtI from Mycobacterium Tuberculosis, the first enzyme in the synthesis of Mycobactin, reveals it to be a salicylate synthase 2006-02-22 2006-09-05 Harrison, A.J.,Gardenborg, T.,Yu, M.,Middleditch, M.,Ramsay, R.J.,Baker, E.N.,Lott, J.S. 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PCC 7942 (Elongatus) at 2.50 A resolution 2006-11-13 2006-12-12 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (YP_400729.1) from Synechococcus SP. PCC 7942 (Elongatus) at 2.50 A resolution To be published 0 0 0 0 2NVX 17129781 RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP 2006-11-13 2006-12-19 Wang, D.,Bushnell, D.A.,Westover, K.D.,Kaplan, C.D.,Kornberg, R.D. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.) 2006 127 941 954 2IAE 17086192 Crystal structure of a protein phosphatase 2A (PP2A) holoenzyme. 2006-09-07 2006-12-26 Cho, U.S.,Xu, W. Crystal structure of a protein phosphatase 2A heterotrimeric holoenzyme. Nature 2007 445 53 57 2NVY 17129781 RNA Polymerase II form II in 150 mM Mn+2 2006-11-13 2006-12-26 Wang, D.,Bushnell, D.A.,Westover, K.D.,Kaplan, C.D.,Kornberg, R.D. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.) 2006 127 941 954 2G3S 16581850 RNA structure containing GU base pairs 2006-02-20 2007-01-16 Jang, S.B.,Hung, L.W.,Jeong, M.S.,Holbrook, E.L.,Chen, X.,Turner, D.H.,Holbrook, S.R. The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs Biophys.J. 2006 90 4530 4537 2FLR 16621549 Novel 5-Azaindole Factor VIIa Inhibitors 2006-01-06 2007-01-23 Riggs, J.R.,Hu, H.,Kolesnikov, A.,Leahy, E.M.,Wesson, K.E.,Shrader, W.D.,Vijaykumar, D.,Wahl, T.A.,Tong, Z.,Sprengeler, P.A.,Green, M.J.,Yu, C.,Katz, B.A.,Sanford, E.,Nguyen, M.,Cabuslay, R.,Young, W.B. Novel 5-azaindole factor VIIa inhibitors. Bioorg.Med.Chem.Lett. 2006 16 3197 3200 2OKR 17255097 Crystal Structure of the P38a-MAPKAP kinase 2 Heterodimer 2007-01-17 2007-02-06 ter Haar, E.,Prabakhar, P.,Liu, X.,Lepre, C. Crystal structure of the P38alpha-MAPKAP kinase 2 heterodimer. 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Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism. Embo J. 2007 26 878 890 2I0L 17267502 X-ray crystal structure of Sap97 PDZ2 bound to the C-terminal peptide of HPV18 E6. 2006-08-10 2007-02-20 Zhang, Y.,Dasgupta, J.,Ma, R.Z.,Banks, L.,Thomas, M.,Chen, X.S. Structures of a Human Papillomavirus (HPV) E6 Polypeptide Bound to MAGUK Proteins: Mechanisms of Targeting Tumor Suppressors by a High-Risk HPV Oncoprotein. J.Virol. 2007 81 3618 3626 2OFV 16970394 crystal structure of aminoquinazoline 1 bound to Lck 2007-01-04 2007-02-27 DiMauro, E.F.,Newcomb, J.,Nunes, J.J.,Bemis, J.E.,Boucher, C.,Buchanan, J.L.,Buckner, W.H.,Cee, V.J.,Chai, L.,Deak, H.L.,Epstein, L.F.,Faust, T.,Gallant, P.,Geuns-Meyer, S.D.,Gore, A.,Gu, Y.,Henkle, B.,Hodous, B.L.,Hsieh, F.,Huang, X.,Kim, J.L.,Lee, J.H.,Martin, M.W.,Masse, C.E.,McGowan, D.C.,Metz, D.,Mohn, D.,Morgenstern, K.A.,Oliveira-dos-Santos, A.,Patel, V.F.,Powers, D.,Rose, P.E.,Schneider, S.,Tomlinson, S.A.,Tudor, Y.-Y.,Turci, S.M.,Welcher, A.A.,White, R.D.,Zhao, H.,Zhu, L.,Zhu, X. Discovery of Aminoquinazolines as Potent, Orally Bioavailable Inhibitors of Lck: Synthesis, SAR, and in Vivo Anti-Inflammatory Activity J.Med.Chem. 2006 49 5671 0 2HKX 17327664 Structure of CooA mutant (N127L/S128L) from Carboxydothermus hydrogenoformans 2006-07-05 2007-03-06 Borjigin, M.,Li, H.,Lanz, N.D.,Kerby, R.L.,Roberts, G.P.,Poulos, T.L. Structure-based hypothesis on the activation of the CO-sensing transcription factor CooA. Acta Crystallogr.,Sect.D 2007 63 282 287 2OCJ 17327663 Human p53 core domain in the absence of DNA 2006-12-20 2007-03-06 Wang, Y.,Rosengarth, A.,Luecke, H. Structure of the human p53 core domain in the absence of DNA. Acta Crystallogr.,Sect.D 2007 63 276 281 2OST 17410205 The structure of a bacterial homing endonuclease : I-Ssp6803I 2007-02-06 2007-03-20 Zhao, L.,Bonocora, R.P.,Shub, D.A.,Stoddard, B.L. The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif. Embo J. 2007 26 2432 2442 2OST 17410205 The structure of a bacterial homing endonuclease : I-Ssp6803I 2007-02-06 2007-03-20 Zhao, L.,Bonocora, R.P.,Shub, D.A.,Stoddard, B.L. The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif. Embo J. 2007 26 2432 2442 2P2I 17253678 Crystal structure of the VEGFR2 kinase domain in complex with a nicotinamide inhibitor 2007-03-07 2007-03-20 Hodous, B.L.,Geuns-Meyer, S.D.,Hughes, P.E.,Albrecht, B.K.,Bellon, S.,Bready, J.,Caenepeel, S.,Cee, V.J.,Chaffee, S.C.,Coxon, A.,Emery, M.,Fretland, J.,Gallant, P.,Gu, Y.,Hoffman, D.,Johnson, R.E.,Kendall, R.,Kim, J.L.,Long, A.M.,Morrison, M.,Olivieri, P.R.,Patel, V.F.,Polverino, A.,Rose, P.,Tempest, P.,Wang, L.,Whittington, D.A.,Zhao, H. Evolution of a Highly Selective and Potent 2-(Pyridin-2-yl)-1,3,5-triazine Tie-2 Kinase Inhibitor J.Med.Chem. 2007 50 611 626 2GFF Crystal Structure of Yersinia pestis LsrG 2006-03-21 2007-04-03 de Carvalho-Kavanagh, M.,Schafer, J.,Lekin, T.,Toppani, D.,Coleman, M.,Chain, P.,Lao, V.,Zemla, A.,Motin, V.,Garcia, E.,Segelke, B. Crystal structure of lsrG from Yersinia Pestis To be Published 0 0 0 0 2GIQ 16731953 Hepatitis C virus RNA-dependent RNA polymerase NS5B with NNI-2 inhibitor 2006-03-29 2007-04-03 Le Pogam, S.,Kang, H.,Harris, S.F.,Leveque, V.,Giannetti, A.M.,Ali, S.,Jiang, W.R.,Rajyaguru, S.,Tavares, G.,Oshiro, C.,Hendricks, T.,Klumpp, K.,Symons, J.,Browner, M.F.,Cammack, N.,Najera, I. Selection and characterization of replicon variants dually resistant to thumb- and palm-binding nonnucleoside polymerase inhibitors of the hepatitis C virus. J.Virol. 2006 80 6146 6154 2GIR 16731953 Hepatitis C virus RNA-dependent RNA polymerase NS5B with NNI-1 inhibitor 2006-03-29 2007-04-03 Le Pogam, S.,Kang, H.,Harris, S.F.,Leveque, V.,Giannetti, A.M.,Ali, S.,Jiang, W.R.,Rajyaguru, S.,Tavares, G.,Oshiro, C.,Hendricks, T.,Klumpp, K.,Symons, J.,Browner, M.F.,Cammack, N.,Najera, I. Selection and characterization of replicon variants dually resistant to thumb- and palm-binding nonnucleoside polymerase inhibitors of the hepatitis C virus. J.Virol. 2006 80 6146 6154 2OTB 17420458 Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state 2007-02-07 2007-04-03 Henderson, J.N.,Ai, H.W.,Campbell, R.E.,Remington, S.J. Structural basis for reversible photobleaching of a green fluorescent protein homologue. Proc.Natl.Acad.Sci.Usa 2007 104 6672 6677 2ORO 17315988 Murine inducible nitric oxide synthase oxygenase domain (delta 114) (r)-1-(2-imidazol-1-yl-6-methyl-pyrimidin-4-yl)-pyrrolidine-2-carboxylic acid (2-benzo[1,3]dioxol-5-yl-ethyl)-amide complex 2007-02-04 2007-04-10 Davey, D.D.,Adler, M.,Arnaiz, D.,Eagen, K.,Erickson, S.,Guilford, W.,Kenrick, M.,Morrissey, M.M.,Ohlmeyer, M.,Pan, G.,Paradkar, V.M.,Parkinson, J.,Polokoff, M.,Saionz, K.,Santos, C.,Subramanyam, B.,Vergona, R.,Wei, R.G.,Whitlow, M.,Ye, B.,Zhao, Z.S.,Devlin, J.J.,Phillips, G. Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors J.Med.Chem. 2007 50 1146 1157 2NT7 17336064 Crystal structure of PTP1B-inhibitor complex 2006-11-07 2007-04-17 Wan, Z.K.,Follows, B.,Kirincich, S.,Wilson, D.,Binnun, E.,Xu, W.,Joseph-McCarthy, D.,Wu, J.,Smith, M.,Zhang, Y.L.,Tam, M.,Erbe, D.,Tam, S.,Saiah, E.,Lee, J. Probing acid replacements of thiophene PTP1B inhibitors. Bioorg.Med.Chem.Lett. 2007 17 2913 2920 2ORR 17315988 Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-pyrimidine Complex 2007-02-04 2007-04-17 Davey, D.D.,Adler, M.,Arnaia, D.,Eagen, K.,Erickson, S.,Guilford, W.,Kenrick, M.,Morrissey, M.M.,Ohimeyer, M.,Pan, G.,Paradkar, V.M.,Parkinson, J.,Polokoff, M.,Salonz, K.,Santos, C.,Subramanyam, B.,Vergona, R.,Wei, R.G.,Whitlow, M.,Ye, B.,Zhao, Z.S.,Devlin, J.J.,Phillips, G. Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors J.Med.Chem. 2007 50 1146 1157 2ORS 17315988 Murine Inducible Nitric Oxide Synthase Oxygenase Domain (DELTA 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-6-methyl-pyrimidine Complex 2007-02-04 2007-04-17 Davey, D.D.,Adler, M.,Arnaia, D.,Eagen, K.,Erickson, S.,Guilford, W.,Kenrick, M.,Morrissey, M.M.,Ohimeyer, M.,Pan, G.,Paradkar, V.M.,Parkinson, J.,Polokoff, M.,Salonz, K.,Santos, C.,Subramanyam, B.,Vergona, R.,Wei, R.G.,Whitlow, M.,Ye, B.,Zhao, Z.S.,Devlin, J.J.,Phillips, G. Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors J.Med.Chem. 2007 50 1146 1157 2ORT 17315988 Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta 114) 1-Benzo[1,3]dioxol-5-ylmethyl-3S-(4-imidazol-1-yl-phenoxy)-piperidine Complex 2007-02-04 2007-04-17 Davey, D.D.,Adler, M.,Arnaia, D.,Eagen, K.,Erickson, S.,Guilford, W.,Kenrick, M.,Morrissey, M.M.,Ohimeyer, M.,Pan, G.,Paradkar, V.M.,Parkinson, J.,Polokoff, M.,Salonz, K.,Santos, C.,Subramanyam, B.,Vergona, R.,Wei, R.G.,Whitlow, M.,Ye, B.,Zhao, Z.S.,Devlin, J.J.,Phillips, G. Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors J.Med.Chem. 2007 50 1146 1157 2NMX 17407288 Structure of inhibitor binding to Carbonic Anhydrase I 2006-10-23 2007-04-24 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II J.Am.Chem.Soc. 2007 129 5528 5537 2NN1 17407288 Structure of inhibitor binding to Carbonic Anhydrase I 2006-10-23 2007-04-24 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II J.Am.Chem.Soc. 2007 129 5528 5537 2HQL 17348019 Crystal structure of a small single-stranded DNA binding protein from Mycoplasma pneumoniae 2006-07-18 2007-05-01 Das, D.,Hyun, H.,Lou, Y.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae. Proteins 2007 67 776 782 2PND 17548523 Structure or murine CRIg 2007-04-24 2007-05-01 Katschke, K.J.,Helmy, K.Y.,Steffek, M.,Xi, H.,Yin, J.,Lee, W.P.,Gribling, P.,Barck, K.H.,Carano, R.A.,Taylor, R.E.,Rangell, L.,Diehl, L.,Hass, P.E.,Wiesmann, C.,van Lookerenb Campagne, M. A novel inhibitor of the alternative pathway of complement reverses inflammation and bone destruction in experimental arthritis. J.Exp.Med. 2007 204 1319 1325 2NN7 17407288 Structure of inhibitor binding to Carbonic Anhydrase I 2006-10-23 2007-05-08 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II. J.Am.Chem.Soc. 2007 129 5528 5537 2NNG 17407288 Structure of inhibitor binding to Carbonic Anhydrase II 2006-10-24 2007-05-08 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II. J.Am.Chem.Soc. 2007 129 5528 5537 2NNO 17407288 Structure of inhibitor binding to Carbonic Anhydrase II 2006-10-24 2007-05-08 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II. J.Am.Chem.Soc. 2007 129 5528 5537 2NNS 17407288 Structure of inhibitor binding to Carbonic Anhydrase II 2006-10-24 2007-05-08 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II. J.Am.Chem.Soc. 2007 129 5528 5537 2NNV 17407288 Structure of inhibitor binding to Carbonic Anhydrase II 2006-10-24 2007-05-08 Srivastava, D.K.,Jude, K.M.,Banerjee, A.L.,Haldar, M.,Manokaran, S.,Kooren, J.,Mallik, S.,Christianson, D.W. Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II. J.Am.Chem.Soc. 2007 129 5528 5537 2PMW 17502100 The Crystal Structure of Proprotein convertase subtilisin kexin type 9 (PCSK9) 2007-04-23 2007-05-08 Piper, D.E.,Jackson, S.,Liu, Q.,Romanow, W.G.,Shetterly, S.,Thibault, S.T.,Shan, B.,Walker, N.P. The Crystal Structure of PCSK9: A Regulator of Plasma LDL-Cholesterol. Structure 2007 15 545 552 2NWC 17554162 A 3.02 angstrom crystal structure of wild-type apo GroEL in a monoclinic space group 2006-11-14 2007-05-22 Kiser, P.D.,Lodowski, D.T.,Palczewski, K. Purification, crystallization and structure determination of native GroEL from Escherichia coli lacking bound potassium ions Acta Crystallogr.,Sect.F 2007 63 457 461 2UYI 17498954 Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 33 2007-04-07 2007-05-22 Pinkerton, A.B.,Lee, T.T.,Hoffman, T.Z.,Wang, Y.,Kahraman, M.,Cook, T.G.,Severance, D.,Gahman, T.C.,Noble, S.A.,Shiau, A.K.,Davis, R.L. Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors. Bioorg.Med.Chem.Lett. 2007 17 3562 0 2UYM 17498954 Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 37 2007-04-10 2007-05-22 Pinkerton, A.B.,Lee, T.T.,Hoffman, T.Z.,Wang, Y.,Kahraman, M.,Cook, T.G.,Severance, D.,Gahman, T.C.,Noble, S.A.,Shiau, A.K.,Davis, R.L. Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors. Bioorg.Med.Chem.Lett. 2007 17 3562 0 2HQB 17636568 Crystal Structure of a Transcriptional Activator of comK gene from Bacillus halodurans 2006-07-18 2007-05-29 Xu, Q.S.,Ankoudinova, I.,Lou, Y.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans. Proteins 2007 69 409 414 2P05 17520026 Structural Insights into the Evolution of a Non-Biological Protein 2007-02-28 2007-06-05 Smith, M.D.,Rosenow, M.A.,Wang, M.,Allen, J.P.,Szostak, J.W.,Chaput, J.C. Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization. PLoS ONE 2007 2 0 0 2PG2 17498954 Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 15 2007-04-06 2007-06-05 Pinkerton, A.B.,Lee, T.T.,Hoffman, T.Z.,Wang, Y.,Kahraman, M.,Cook, T.G.,Severance, D.,Gahman, T.C.,Noble, S.A.,Shiau, A.K.,Davis, R.L. Synthesis and SAR of thiophene containing kinesin spindle protein (KSP) inhibitors Bioorg.Med.Chem.Lett. 2007 17 3562 3569 2Q30 Crystal structure of a rmlc-like cupin protein (dde_2303) from desulfovibrio desulfuricans subsp. at 1.94 A resolution 2007-05-29 2007-06-19 Joint Center for Structural Genomics (JCSG) Crystal structure of uncharacterized protein (YP_388795.1) from Desulfovibrio desulfuricans G20 at 1.94 A resolution To be published 0 0 0 0 2HYB Crystal Structure of Hexameric DsrEFH 2006-08-04 2007-07-03 Shin, D.H.,Connie, H.,Schulte, A.,Dahl, C.,Kim, R.,Kim, S.H. Crystal structure of hexameric DsrEFH To be Published 0 0 0 0 2Q9A 17622352 Structure of Apo FTSY 2007-06-12 2007-07-03 Reyes, C.L.,Rutenber, E.,Walter, P.,Stroud, R.M. X-ray Structures of the Signal Recognition Particle Receptor Reveal Targeting Cycle Intermediates. Plos One 2007 2 0 0 2OLD 17582169 Bence Jones KWR Protein- Immunoglobulin Light Chain Dimer, P3(2)21 Crystal Form 2007-01-19 2007-07-17 Makino, D.L.,Henschen-Edman, A.H.,Larson, S.B.,McPherson, A. Bence Jones KWR protein structures determined by X-ray crystallography. Acta Crystallogr.,Sect.D 2007 63 780 792 2OMN 17582169 Bence Jones KWR Protein- Immunoglobulin Light Chain Dimer, P4(3)2(1)2 Crystal Form 2007-01-22 2007-07-17 Makino, D.L.,Henschen-Edman, A.H.,Larson, S.B.,McPherson, A. Bence Jones KWR protein structures determined by X-ray crystallography. Acta Crystallogr.,Sect.D 2007 63 780 792 2QR0 17825836 Structure of VEGF complexed to a Fab containing TYR and SER in the CDRs 2007-07-27 2007-08-14 Fellouse, F.A.,Esaki, K.,Birtalan, S.,Raptis, D.,Cancasci, V.J.,Koide, A.,Jhurani, P.,Vasser, M.,Wiesmann, C.,Kossiakoff, A.A.,Koide, S.,Sidhu, S.S. High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries J.Mol.Biol. 2007 373 924 940 2Z74 17804015 T. tengcongensis glmS ribozyme bound to glucose-6-phosphate 2007-08-15 2007-09-04 Klein, D.J.,Wilkinson, S.R.,Been, M.D.,Ferre-D'Amare, A.R. Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol. 2007 373 178 189 2NQB Drosophila Nucleosome Structure 2006-10-30 2007-09-11 Chakravarthy, S.,Luger, K. Comparative analysis of nucleosome structures from different species. To be Published 0 0 0 0 2QU5 17696416 Crystal structure of the VEGFR2 kinase domain in complex with a benzimidazole inhibitor 2007-08-03 2007-09-25 Potashman, M.H.,Bready, J.,Coxon, A.,Demelfi, T.M.,Dipietro, L.,Doerr, N.,Elbaum, D.,Estrada, J.,Gallant, P.,Germain, J.,Gu, Y.,Harmange, J.C.,Kaufman, S.A.,Kendall, R.,Kim, J.L.,Kumar, G.N.,Long, A.M.,Neervannan, S.,Patel, V.F.,Polverino, A.,Rose, P.,Plas, S.V.,Whittington, D.,Zanon, R.,Zhao, H. Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors. J.Med.Chem. 2007 50 4351 4373 2QU6 17696416 Crystal structure of the VEGFR2 kinase domain in complex with a benzoxazole inhibitor 2007-08-03 2007-09-25 Potashman, M.H.,Bready, J.,Coxon, A.,Demelfi, T.M.,Dipietro, L.,Doerr, N.,Elbaum, D.,Estrada, J.,Gallant, P.,Germain, J.,Gu, Y.,Harmange, J.C.,Kaufman, S.A.,Kendall, R.,Kim, J.L.,Kumar, G.N.,Long, A.M.,Neervannan, S.,Patel, V.F.,Polverino, A.,Rose, P.,Plas, S.V.,Whittington, D.,Zanon, R.,Zhao, H. Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors. J.Med.Chem. 2007 50 4351 4373 2QE2 17402724 Structure of HCV NS5B Bound to an Anthranilic Acid Inhibitor 2007-06-22 2007-10-02 Nittoli, T.,Curran, K.,Insaf, S.,DiGrandi, M.,Orlowski, M.,Chopra, R.,Agarwal, A.,Howe, A.Y.M.,Prashad, A.,Brawner Floyd, M.,Johnson, B.,Sutherland, A.,Wheless, K.,Feld, B.,O'Connell, J.,Mansour, T.S.,Bloom, J. Identification of Anthranilic Acid Derivatives as a Novel Class of Allosteric Inhibitors of Hepatitis C NS5B Polymerase J.Med.Chem. 2007 50 2108 2116 2QE5 17402724 Structure of HCV NS5B Bound to an Anthranilic Acid Inhibitor 2007-06-22 2007-10-02 Nittoli, T.,Curran, K.,Insaf, S.,DiGrandi, M.,Orlowski, M.,Chopra, R.,Agarwal, A.,Howe, A.Y.M.,Prashad, A.,Floyd, M.B.,Johnson, B.,Sutherland, A.,Wheless, K.,Feld, B.,O'Connell, J.,Mansour, T.S.,Bloom, J. Identification of Anthranilic Acid Derivatives as a Novel Class of Allosteric Inhibitors of Hepatitis C NS5B Polymerase J.Med.Chem. 2007 50 2108 2116 2PL0 17910071 LCK bound to imatinib 2007-04-18 2007-10-09 Jacobs, M.D.,Caron, P.R.,Hare, B.J. Classifying protein kinase structures guides use of ligand-selectivity profiles to predict inactive conformations: Structure of lck/imatinib complex. Proteins 2007 70 1451 1460 2V9K 17900615 Crystal structure of human PUS10, a novel pseudouridine synthase. 2007-08-23 2007-10-09 Mccleverty, C.J.,Hornsby, M.,Spraggon, G.,Kreusch, A. Crystal Structure of Human Pus10, a Novel Pseudouridine Synthase. J.Mol.Biol. 2007 373 1243 0 2QQK 17989695 Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab 2007-07-26 2007-11-20 Appleton, B.A.,Wu, P.,Maloney, J.,Yin, J.,Liang, W.C.,Stawicki, S.,Mortara, K.,Bowman, K.K.,Elliott, J.M.,Desmarais, W.,Bazan, J.F.,Bagri, A.,Tessier-Lavigne, M.,Koch, A.W.,Wu, Y.,Watts, R.J.,Wiesmann, C. 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Biochemistry 2007 46 9865 9873 3B4W Crystal structure of Mycobacterium tuberculosis aldehyde dehydrogenase complexed with NAD+ 2007-10-24 2007-11-27 Moon, J.H.,Lyon, A.E.,Yu, M.,Hung, L.-W.,Terwilliger, T.,Kim, C.-Y. X-ray crystal structure of aldehyde dehydrogenase from Mycobacterium tuberculosis complexed with NAD+. To Be Published 0 0 0 0 3B5X 18024585 Crystal Structure of MsbA from Vibrio cholerae 2007-10-26 2007-12-04 Ward, A.,Reyes, C.L.,Yu, J.,Roth, C.B.,Chang, G. Flexibility in the ABC transporter MsbA: Alternating access with a twist. Proc.Natl.Acad.Sci.Usa 2007 104 19005 19010 2RJP 18042673 Crystal structure of ADAMTS4 with inhibitor bound 2007-10-15 2007-12-11 Mosyak, L.,Georgiadis, K.,Shane, T.,Svenson, K.,Hebert, T.,McDonagh, T.,Mackie, S.,Olland, S.,Lin, L.,Zhong, X.,Kriz, R.,Reifenberg, E.L.,Collins-Racie, L.A.,Corcoran, C.,Freeman, B.,Zollner, R.,Marvell, T.,Vera, M.,Sum, P.E.,Lavallie, E.R.,Stahl, M.,Somers, W. 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Discovery of Novel, Potent Benzamide Inhibitors of 11beta-Hydroxysteroid Dehydrogenase Type 1 (11beta-HSD1) Exhibiting Oral Activity in an Enzyme Inhibition ex Vivo Model J.Med.Chem. 2008 51 3953 3960 3DH4 18599740 Crystal Structure of Sodium/Sugar symporter with bound Galactose from vibrio parahaemolyticus 2008-06-16 2008-08-05 Faham, S.,Watanabe, A.,Besserer, G.M.,Cascio, D.,Specht, A.,Hirayama, B.A.,Wright, E.M.,Abramson, J. The crystal structure of a sodium galactose transporter reveals mechanistic insights into Na+/sugar symport. Science 2008 321 810 814 3E7O 18801372 Crystal Structure of JNK2 2008-08-18 2008-09-09 Shaw, D.,Wang, S.M.,Villasenor, A.G.,Tsing, S.,Walter, D.,Browner, M.F.,Barnett, J.,Kuglstatter, A. The crystal structure of JNK2 reveals conformational flexibility in the MAP kinase insert and indicates its involvement in the regulation of catalytic activity. J.Mol.Biol. 2008 383 885 893 3ECD Crystal structure of serine hydroxymethyltransferase from Burkholderia pseudomallei 2008-08-29 2008-09-09 Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of serine hydroxymethyltransferase from Burkholderia pseudomallei To be Published 0 0 0 0 3B6Z 22733743 Lovastatin polyketide enoyl reductase (LovC) complexed with 2'-phosphoadenosyl isomer of crotonoyl-CoA 2007-10-29 2008-09-16 Ames, B.D.,Nguyen, C.,Bruegger, J.,Smith, P.,Xu, W.,Ma, S.,Wong, E.,Wong, S.,Xie, X.,Li, J.W.,Vederas, J.C.,Tang, Y.,Tsai, S.C. Crystal structure and biochemical studies of the trans-acting polyketide enoyl reductase LovC from lovastatin biosynthesis. 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Crystal structure of Tm1382, a putative Nudix hydrolase To be Published 0 0 0 0 3EK1 Crystal structure of aldehyde dehydrogenase from brucella melitensis biovar abortus 2308 2008-09-18 2008-09-30 Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of aldehyde dehydrogenase from brucella melitensis biovar abortus 2308 To be Published 0 0 0 0 3D5Q 18789704 Crystal Structure of 11b-HSD1 in Complex with Triazole Inhibitor 2008-05-16 2008-10-07 Tu, H.,Powers, J.P.,Liu, J.,Ursu, S.,Sudom, A.,Yan, X.,Xu, H.,Meininger, D.,Degraffenreid, M.,He, X.,Jaen, J.C.,Sun, D.,Labelle, M.,Yamamoto, H.,Shan, B.,Walker, N.P.,Wang, Z. Distinctive molecular inhibition mechanisms for selective inhibitors of human 11beta-hydroxysteroid dehydrogenase type 1. Bioorg.Med.Chem. 2008 16 8922 8931 3DSC 18854158 Crystal structure of P. furiosus Mre11 DNA synaptic complex 2008-07-11 2008-10-14 Williams, R.S.,Moncalian, G.,Williams, J.S.,Yamada, Y.,Limbo, O.,Shin, D.S.,Groocock, L.M.,Cahill, D.,Hitomi, C.,Guenther, G.,Moiani, D.,Carney, J.P.,Russell, P.,Tainer, J.A. Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell(Cambridge,Mass.) 2008 135 97 109 3CN0 18811132 Human transthyretin (TTR) in complex with 3,5-Dimethyl-4-hydroxystilbene 2008-03-24 2008-10-28 Johnson, S.M.,Connelly, S.,Wilson, I.A.,Kelly, J.W. Toward optimization of the linker substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies. J.Med.Chem. 2008 51 6348 6358 3CN1 18811132 Human transthyretin (TTR) in complex with 3,5-Dibromo-4-hydroxystilbene 2008-03-24 2008-10-28 Johnson, S.M.,Connelly, S.,Wilson, I.A.,Kelly, J.W. Toward optimization of the linker substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies. J.Med.Chem. 2008 51 6348 6358 3CN2 18811132 Human transthyretin (TTR) in complex with 3,5-Dibromo-4-hydroxybiphenyl 2008-03-24 2008-10-28 Johnson, S.M.,Connelly, S.,Wilson, I.A.,Kelly, J.W. Toward optimization of the linker substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies. J.Med.Chem. 2008 51 6348 6358 3EGZ 18940672 Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch 2008-09-11 2008-10-28 Xiao, H.,Edwards, T.E.,Ferre-D'Amare, A.R. Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch Chem.Biol. 2008 15 1125 1137 3B3O 19296678 Structure of neuronal nos heme domain in complex with a inhibitor (+-)-n1-{cis-4'-[(6""-amino-4""-methylpyridin-2""-yl)methyl]pyrrolidin-3'-yl}-n2-(4'-chlorobenzyl)ethane-1,2-diamine 2007-10-22 2008-11-04 Igarashi, J.,Li, H.,Jamal, J.,Ji, H.,Fang, J.,Lawton, G.R.,Silverman, R.B.,Poulos, T.L. Crystal structures of constitutive nitric oxide synthases in complex with de novo designed inhibitors. J.Med.Chem. 2009 52 2060 2066 2QOJ 17720189 Coevolution of a homing endonuclease and its host target sequence 2007-07-20 2008-11-11 Scalley-Kim, M.,McConnell-Smith, A.,Stoddard, B.L. Coevolution of a homing endonuclease and its host target sequence. J.Mol.Biol. 2007 372 1305 1319 3CUX 18714089 Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design 2008-04-17 2008-11-11 Lohman, J.R.,Olson, A.C.,Remington, S.J. Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci. 2008 17 1935 1945 3CUZ 18714089 Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design 2008-04-17 2008-11-11 Lohman, J.R.,Olson, A.C.,Remington, S.J. Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci. 2008 17 1935 1945 3CV2 18714089 Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design 2008-04-17 2008-11-11 Lohman, J.R.,Olson, A.C.,Remington, S.J. Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci. 2008 17 1935 1945 3EY4 Further studies with the 2-amino-1,3-thiazol-4(5H)-one class of 11-hydroxysteroid dehydrogenase type 1 (11-HSD1) inhibitors: Reducing pregnane X receptor (PXR) activity and exploring activity in a monkey pharmacodynamic model 2008-10-17 2008-11-11 Christopher, F.,Bartberger, M.D.,Bercot, E.A.,Chen, M.,Cupples, R.,Emery, M.,Fretland, J.,Guram, A.,Hale, C.,Han, N.H.,Hickman, D.,Hungate, R.W.,Hayashi, M.,Komorowski, R.,Liu, Q.Y.,Matsumoto, G.,Jean, D.J.St.,Ursu, S.,Voniant, M.,Xu, G.F.,Ye, Q.P.,Yuan, C.,Zhang, J.D.,Zhang, X.P.,Tu, H.,Wang, M.H. Further studies with the 2-amino-1,3-thiazol-4(5H)-one class of 11-hydroxysteroid dehydrogenase type 1 (11-HSD1) inhibitors: Reducing pregnane X receptor (PXR) activity and exploring activity in a monkey pharmacodynamic model To be Published 2008 0 0 0 3BDY 19299620 Dual specific bH1 Fab in complex with VEGF 2007-11-15 2008-11-18 Bostrom, J.,Yu, S.F.,Kan, D.,Appleton, B.A.,Lee, C.V.,Billeci, K.,Man, W.,Peale, F.,Ross, S.,Wiesmann, C.,Fuh, G. Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site Science 2009 323 1610 1614 3BE1 19299620 Dual specific bH1 Fab in complex with the extracellular domain of HER2/ErbB-2 2007-11-15 2008-11-18 Bostrom, J.,Yu, S.F.,Kan, D.,Appleton, B.A.,Lee, C.V.,Billeci, K.,Man, W.,Peale, F.,Ross, S.,Wiesmann, C.,Fuh, G. Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site Science 2009 323 1610 1614 3DYA 19007201 HIV-1 RT with non-nucleoside inhibitor annulated Pyrazole 1 2008-07-25 2008-11-25 Sweeney, Z.K.,Harris, S.F.,Arora, S.F.,Javanbakht, H.,Li, Y.,Fretland, J.,Davidson, J.P.,Billedeau, J.R.,Gleason, S.K.,Hirschfeld, D.,Kennedy-Smith, J.J.,Mirzadegan, T.,Roetz, R.,Smith, M.,Sperry, S.,Suh, J.M.,Wu, J.,Tsing, S.,Villasenor, A.G.,Paul, A.,Su, G.,Heilek, G.,Hang, J.Q.,Zhou, A.S.,Jernelius, J.A.,Zhang, F.J.,Klumpp, K. Design of annulated pyrazoles as inhibitors of HIV-1 reverse transcriptase J.Med.Chem. 2008 51 7449 7458 3EKO 18929486 Dihydroxylphenyl amides as inhibitors of the Hsp90 molecular chaperone 2008-09-19 2008-11-25 Kung, P.P.,Funk, L.,Meng, J.,Collins, M.,Zhou, J.Z.,Johnson, M.C.,Ekker, A.,Wang, J.,Mehta, P.,Yin, M.J.,Rodgers, C.,Davies, J.F.,Bayman, E.,Smeal, T.,Maegley, K.A.,Gehring, M.R. Dihydroxylphenyl amides as inhibitors of the Hsp90 molecular chaperone. Bioorg.Med.Chem.Lett. 2008 18 6273 6278 3EMG 18938080 Discovery and SAR of novel 4-thiazolyl-2-phenylaminopyrimidines as potent inhibitors of spleen tyrosine kinase (SYK) 2008-09-24 2008-12-02 Farmer, L.J.,Bemis, G.,Britt, S.D.,Cochran, J.,Connors, M.,Harrington, E.M.,Hoock, T.,Markland, W.,Nanthakumar, S.,Taslimi, P.,Ter Haar, E.,Wang, J.,Zhaveri, D.,Salituro, F.G. Discovery and SAR of novel 4-thiazolyl-2-phenylaminopyrimidines as potent inhibitors of spleen tyrosine kinase (SYK). Bioorg.Med.Chem.Lett. 2008 18 6231 6235 3EQP 18993068 Crystal Structure of Ack1 with compound T95 2008-10-01 2008-12-02 Kopecky, D.J.,Hao, X.,Chen, Y.,Fu, J.,Jiao, X.,Jaen, J.C.,Cardozo, M.G.,Liu, J.,Wang, Z.,Walker, N.P.,Wesche, H.,Li, S.,Farrelly, E.,Xiao, S.H.,Kayser, F. Identification and optimization of N3,N6-diaryl-1H-pyrazolo[3,4-d]pyrimidine-3,6-diamines as a novel class of ACK1 inhibitors. 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Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases Nucleic Acids Res. 2008 36 6988 6998 3FMZ 19147488 Crystal Structure of Retinol-Binding Protein 4 (RBP4) in complex with non-retinoid ligand 2008-12-22 2009-01-27 Motani, A.,Wang, Z.,Conn, M.,Siegler, K.,Zhang, Y.,Liu, Q.,Johnstone, S.,Xu, H.,Thibault, S.,Wang, Y.,Fan, P.,Connors, R.,Le, H.,Xu, G.,Walker, N.,Shan, B.,Coward, P. Identification and Characterization of a Non-retinoid Ligand for Retinol-binding Protein 4 Which Lowers Serum Retinol-binding Protein 4 Levels in Vivo. J.Biol.Chem. 2009 284 7673 7680 3FCA 19193005 Genetic Incorporation of a Metal-ion Chelating Amino Acid into proteins as biophysical probe 2008-11-21 2009-02-17 Lee, H.S.,Spraggon, G.,Schultz, P.G.,Wang, F. Genetic incorporation of a metal-ion chelating amino acid into proteins as a biophysical probe. J.Am.Chem.Soc. 2009 131 2481 2483 3CTY 18717593 Crystal structure of T. acidophilum thioredoxin reductase 2008-04-14 2009-02-24 Hernandez, H.H.,Jaquez, O.A.,Hamill, M.J.,Elliott, S.J.,Drennan, C.L. Thioredoxin reductase from Thermoplasma acidophilum: a new twist on redox regulation. Biochemistry 2008 47 9728 9737 3G0F 19164557 KIT kinase domain mutant D816H in complex with sunitinib 2009-01-27 2009-02-24 Gajiwala, K.S.,Wu, J.C.,Christensen, J.,Deshmukh, G.D.,Diehl, W.,DiNitto, J.P.,English, J.M.,Greig, M.J.,He, Y.A.,Jacques, S.L.,Lunney, E.A.,McTigue, M.,Molina, D.,Quenzer, T.,Wells, P.A.,Yu, X.,Zhang, Y.,Zou, A.,Emmett, M.R.,Marshall, A.G.,Zhang, H.M.,Demetri, G.D. KIT kinase mutants show unique mechanisms of drug resistance to imatinib and sunitinib in gastrointestinal stromal tumor patients. Proc.Natl.Acad.Sci.USA 2009 106 1542 1547 3CBX 19252499 The Dvl2 PDZ Domain in Complex with the C1 Inhibitory Peptide 2008-02-23 2009-03-03 Zhang, Y.,Appleton, B.A.,Wiesmann, C.,Lau, T.,Costa, M.,Hannoush, R.N.,Sidhu, S.S. Inhibition of Wnt signaling by Dishevelled PDZ peptides Nat.Chem.Biol. 2009 5 217 219 3CBY 19252499 The Dvl2 PDZ Domain in Complex with the N1 Inhibitory Peptide 2008-02-23 2009-03-03 Zhang, Y.,Appleton, B.A.,Wiesmann, C.,Lau, T.,Costa, M.,Hannoush, R.N.,Sidhu, S.S. Inhibition of Wnt signaling by Dishevelled PDZ peptides Nat.Chem.Biol. 2009 5 217 219 3CBZ 19252499 The Dvl2 PDZ Domain in Complex with the N2 Inhibitory Peptide 2008-02-23 2009-03-03 Zhang, Y.,Appleton, B.A.,Wiesmann, C.,Lau, T.,Costa, M.,Hannoush, R.N.,Sidhu, S.S. Inhibition of Wnt signaling by Dishevelled PDZ peptides Nat.Chem.Biol. 2009 5 217 219 3CC0 19252499 The Dvl2 PDZ Domain in Complex with the N3 Inhibitory Peptide 2008-02-23 2009-03-03 Zhang, Y.,Appleton, B.A.,Wiesmann, C.,Lau, T.,Costa, M.,Hannoush, R.N.,Sidhu, S.S. Inhibition of Wnt signaling by Dishevelled PDZ peptides Nat.Chem.Biol. 2009 5 217 219 3GE4 Crystal structure of ferritin:DNA-binding protein DPS from Brucella Melitensis 2009-02-25 2009-03-03 Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of ferritin:DNA-binding protein DPS from Brucella Melitensis To be Published 0 0 0 0 3G6J 19196712 C3b in complex with a C3b specific Fab 2009-02-06 2009-03-10 Katschke, K.J.,Stawicki, S.,Yin, J.,Steffek, M.,Xi, H.,Sturgeon, L.,Hass, P.E.,Loyet, K.M.,Deforge, L.,Wu, Y.,van Lookeren Campagne, M.,Wiesmann, C. Structural and Functional Analysis of a C3b-specific Antibody That Selectively Inhibits the Alternative Pathway of Complement J.Biol.Chem. 2009 284 10473 10479 3GKA Crystal structure of N-ethylmaleimidine reductase from Burkholderia pseudomallei 2009-03-10 2009-03-17 Edwards, T.E.,Staker, B.L.,Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of N-ethylmaleimidine reductase from Burkholderia pseudomallei To be Published 0 0 0 0 3FQQ 19244328 Crystal structure of a novel dimeric form of HCV NS5A domain I protein 2009-01-07 2009-03-24 Love, R.A.,Brodsky, O.,Hickey, M.J.,Wells, P.A.,Cronin, C.N. Crystal structure of a novel dimeric form of NS5A domain I protein from hepatitis C virus J.Virol. 2009 83 4395 4403 3GRP 2.1 Angstrom crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from Bartonella henselae 2009-03-26 2009-04-07 Staker, B.L. 2.1 Angstrom crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from Bartonella henselae To be Published 0 0 0 0 3G9O 19372434 GR DNA-binding domain:Sgk 16bp complex-9 2009-02-13 2009-04-21 Meijsing, S.H.,Pufall, M.A.,So, A.Y.,Bates, D.L.,Chen, L.,Yamamoto, K.R. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science 2009 324 407 410 3H42 19443683 Crystal structure of PCSK9 in complex with Fab from LDLR competitive antibody 2009-04-17 2009-05-05 Chan, J.C.,Piper, D.E.,Cao, Q.,Liu, D.,King, C.,Wang, W.,Tang, J.,Liu, Q.,Higbee, J.,Xia, Z.,Di, Y.,Shetterly, S.,Arimura, Z.,Salomonis, H.,Romanow, W.G.,Thibault, S.T.,Zhang, R.,Cao, P.,Yang, X.P.,Yu, T.,Lu, M.,Retter, M.W.,Kwon, G.,Henne, K.,Pan, O.,Tsai, M.M.,Fuchslocher, B.,Yang, E.,Zhou, L.,Lee, K.J.,Daris, M.,Sheng, J.,Wang, Y.,Shen, W.D.,Yeh, W.C.,Emery, M.,Walker, N.P.,Shan, B.,Schwarz, M.,Jackson, S.M. From the Cover: A proprotein convertase subtilisin/kexin type 9 neutralizing antibody reduces serum cholesterol in mice and nonhuman primates. Proc.Natl.Acad.Sci.USA 2009 106 9820 9825 3D2K Crystal structure of mouse Aurora A (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with [7-(2-{2-[3-(3-chloro-phenyl)-ureido]-thiazol-5-yl}-ethylamino)-pyrazolo[4,3-d]pyrimidin-1-yl]-acetic acid 2008-05-08 2009-05-12 Oslob, J.D.,Yu, C.,Allen, D.A.,Baskaran, S.,Maung, J.,Michelotti, E.F.,Elling, R.A.,Romanowski, M.J. Discovery of Aurora-A-selective inhibitors To be Published 0 0 0 0 3H81 25613812 Crystal structure of enoyl-CoA hydratase from Mycobacterium tuberculosis 2009-04-28 2009-05-12 Baugh, L.,Phan, I.,Begley, D.W.,Clifton, M.C.,Armour, B.,Dranow, D.M.,Taylor, B.M.,Muruthi, M.M.,Abendroth, J.,Fairman, J.W.,Fox, D.,Dieterich, S.H.,Staker, B.L.,Gardberg, A.S.,Choi, R.,Hewitt, S.N.,Napuli, A.J.,Myers, J.,Barrett, L.K.,Zhang, Y.,Ferrell, M.,Mundt, E.,Thompkins, K.,Tran, N.,Lyons-Abbott, S.,Abramov, A.,Sekar, A.,Serbzhinskiy, D.,Lorimer, D.,Buchko, G.W.,Stacy, R.,Stewart, L.J.,Edwards, T.E.,Van Voorhis, W.C.,Myler, P.J. Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) 2015 95 142 148 3GD4 19447115 Crystal structure of the reduced, NAD-bound form of murine apoptosis inducing factor 2009-02-23 2009-05-19 Sevrioukova, I.F. Redox-linked conformational dynamics in apoptosis-inducing factor J.Mol.Biol. 2009 390 924 938 3D1N 19450691 Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter 2008-05-06 2009-05-26 Pereira, J.H.,Kim, S.H. Structure of human Brn-5 transcription factor in complex with CRH gene promoter. J.Struct.Biol. 2009 167 159 165 2WGJ 21812414 X-ray Structure of PF-02341066 bound to the kinase domain of c-Met 2009-04-20 2009-06-02 Cui, J.J.,Tran-Dube, M.,Shen, H.,Nambu, M.,Kung, P.P.,Pairish, M.,Jia, L.,Meng, J.,Funk, L.,Botrous, I.,Mctigue, M.,Grodsky, N.,Ryan, K.,Padrique, E.,Alton, G.,Timofeevski, S.,Yamazaki, S.,Li, Q.,Zou, H.,Christensen, J.,Mroczkowski, B.,Bender, S.,Kania, R.S.,Edwards, M.P. Structure Based Drug Design of Crizotinib (Pf-02341066), a Potent and Selective Dual Inhibitor of Mesenchymal-Epithelial Transition Factor (C-met) Kinase and Anaplastic Lymphoma Kinase (Alk). J.Med.Chem 2011 54 6342 0 3GTO 19478184 Backtracked RNA polymerase II complex with 15mer RNA 2009-03-27 2009-06-09 Wang, D.,Bushnell, D.A.,Huang, X.,Westover, K.D.,Levitt, M.,Kornberg, R.D. Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science 2009 324 1203 1206 3H0A 19464171 Crystal Structure of Peroxisome Proliferator-Activated Receptor Gamma (PPARg) and Retinoic Acid Receptor Alpha (RXRa) in Complex with 9-cis Retinoic Acid, Co-activator Peptide, and a Partial Agonist 2009-04-08 2009-06-09 Connors, R.V.,Wang, Z.,Harrison, M.,Zhang, A.,Wanska, M.,Hiscock, S.,Fox, B.,Dore, M.,Labelle, M.,Sudom, A.,Johnstone, S.,Liu, J.,Walker, N.P.,Chai, A.,Siegler, K.,Li, Y.,Coward, P. 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Crystal structure of isoprenoid biosynthesis protein with amidotransferase-like domain from Ehrlichia Chaffeensis at 1.90A resolution To be Published 0 0 0 0 3FV5 Crystal Structure of E. coli Topoisomerase IV co-complexed with inhibitor 2009-01-15 2010-01-26 Wei, Y.,Letiran, A. Design and syntheses of novel C7-derived-aminobenzimidazole ureas: bacterial gyrase/topoisomerase IV inhibitors with potent Gram-positve antibacterial activity To be Published 0 0 0 0 3LG6 21904047 Crystal structure of putative glutathione transferase from Coccidioides immitis 2010-01-19 2010-01-26 Edwards, T.E.,Bryan, C.M.,Leibly, D.J.,Dieterich, S.H.,Abendroth, J.,Sankaran, B.,Sivam, D.,Staker, B.L.,Van Voorhis, W.C.,Myler, P.J.,Stewart, L.J. Structures of a putative zeta-class glutathione S-transferase from the pathogenic fungus Coccidioides immitis. Acta Crystallogr.,Sect.F 2011 67 1038 1043 3L70 Cytochrome BC1 complex from chicken with trifloxystrobin bound 2009-12-27 2010-02-02 Huang, L.,Berry, E.A. Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other ""distal"" Qo inhibitors. To be Published 0 0 0 0 3L71 Cytochrome BC1 complex from chicken with azoxystrobin bound 2009-12-27 2010-02-02 Huang, L.,Berry, E.A. Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other ""DISTAL"" Qo inhibitors. To be Published 0 0 0 0 3L73 Cytochrome BC1 complex from chicken with triazolone inhibitor 2009-12-27 2010-02-02 Huang, L.,Berry, E.A. Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other ""DISTAL"" Qo inhibitors. To be Published 0 0 0 0 3L74 Cytochrome BC1 complex from chicken with famoxadone bound 2009-12-28 2010-02-02 Huang, L.,Berry, E.A. Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other ""DISTAL"" Qo inhibitors. To be Published 0 0 0 0 3L75 Cytochrome BC1 complex from chicken with fenamidone bound 2009-12-28 2010-02-02 Huang, L.,Berry, E.A. FAMOXADONE AND RELATED INHIBITORS BIND LIKE METHOXY ACRYLATE INHIBITORS IN THE Qo SITE OF THE BC1 COMPL AND FIX THE RIESKE IRON-SULFUR PROTEIN IN A POSITIO CLOSE TO BUT DISTINCT FROM THAT SEEN WITH STIGMATELLIN AND OTHER ""DISTAL"" Qo INHIBITORS. To be Published 0 0 0 0 3L13 20050669 Crystal Structures of Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors 2009-12-10 2010-02-16 Sutherlin, D.P.,Sampath, D.,Berry, M.,Castanedo, G.,Chang, Z.,Chuckowree, I.,Dotson, J.,Folkes, A.,Friedman, L.,Goldsmith, R.,Heffron, T.,Lee, L.,Lesnick, J.,Lewis, C.,Mathieu, S.,Nonomiya, J.,Olivero, A.,Pang, J.,Prior, W.W.,Salphati, L.,Sideris, S.,Tian, Q.,Tsui, V.,Wan, N.C.,Wang, S.,Wiesmann, C.,Wong, S.,Zhu, B.Y. Discovery of (Thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer. J.Med.Chem. 2010 53 1086 1097 3L16 20050669 Discovery of (thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer 2009-12-10 2010-02-16 Sutherlin, D.P.,Sampath, D.,Berry, M.,Castanedo, G.,Chang, Z.,Chuckowree, I.,Dotson, J.,Folkes, A.,Friedman, L.,Goldsmith, R.,Heffron, T.,Lee, L.,Lesnick, J.,Lewis, C.,Mathieu, S.,Nonomiya, J.,Olivero, A.,Pang, J.,Prior, W.W.,Salphati, L.,Sideris, S.,Tian, Q.,Tsui, V.,Wan, N.C.,Wang, S.,Wiesmann, C.,Wong, S.,Zhu, B.Y. Discovery of (Thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer. J.Med.Chem. 2010 53 1086 1097 3L17 20050669 Discovery of (thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer 2009-12-10 2010-02-16 Sutherlin, D.P.,Sampath, D.,Berry, M.,Castanedo, G.,Chang, Z.,Chuckowree, I.,Dotson, J.,Folkes, A.,Friedman, L.,Goldsmith, R.,Heffron, T.,Lee, L.,Lesnick, J.,Lewis, C.,Mathieu, S.,Nonomiya, J.,Olivero, A.,Pang, J.,Prior, W.W.,Salphati, L.,Sideris, S.,Tian, Q.,Tsui, V.,Wan, N.C.,Wang, S.,Wiesmann, C.,Wong, S.,Zhu, B.Y. Discovery of (Thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer. J.Med.Chem. 2010 53 1086 1097 3LGJ Crystal structure of single-stranded binding protein (ssb) from Bartonella henselae 2010-01-20 2010-02-16 Edwards, T.E.,Abendroth, J.,Sankaran, B. Crystal structure of single-stranded binding protein (ssb) from Bartonella henselae To be Published 0 0 0 0 3LNC Crystal structure of guanylate kinase from Anaplasma phagocytophilum 2010-02-02 2010-02-16 Abendroth, J.,Sankaran, B.,Davies, D.,Staker, B. Crystal structure of guanylate kinase from Anaplasma phagocytophilum TO BE PUBLISHED 0 0 0 0 3HN8 20173762 Crystal structure of synaptotagmin 2009-05-30 2010-02-23 Vrljic, M.,Strop, P.,Ernst, J.A.,Sutton, R.B.,Chu, S.,Brunger, A.T. Molecular mechanism of the synaptotagmin-SNARE interaction in Ca2+-triggered vesicle fusion. Nat.Struct.Mol.Biol. 2010 17 325 331 3LAL 20138513 Crystal structure of HIV-1 reverse transcriptase in complex with N1-ethyl pyrimidinedione non-nucleoside inhibitor 2010-01-06 2010-02-23 Mitchell, M.L.,Son, J.C.,Guo, H.,Im, Y.A.,Cho, E.J.,Wang, J.,Hayes, J.,Wang, M.,Paul, A.,Lansdon, E.B.,Chen, J.M.,Graupe, D.,Rhodes, G.,He, G.X.,Geleziunas, R.,Xu, L.,Kim, C.U. N1-Alkyl pyrimidinediones as non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg.Med.Chem.Lett. 2010 20 1589 1592 3LAM 20138513 Crystal structure of HIV-1 reverse transcriptase in complex with N1-propyl pyrimidinedione non-nucleoside inhibitor 2010-01-06 2010-02-23 Mitchell, M.L.,Son, J.C.,Guo, H.,Im, Y.A.,Cho, E.J.,Wang, J.,Hayes, J.,Wang, M.,Paul, A.,Lansdon, E.B.,Chen, J.M.,Graupe, D.,Rhodes, G.,He, G.X.,Geleziunas, R.,Xu, L.,Kim, C.U. N1-Alkyl pyrimidinediones as non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg.Med.Chem.Lett. 2010 20 1589 1592 3LAN 20138513 Crystal structure of HIV-1 reverse transcriptase in complex with N1-butyl pyrimidinedione non-nucleoside inhibitor 2010-01-06 2010-02-23 Mitchell, M.L.,Son, J.C.,Guo, H.,Im, Y.A.,Cho, E.J.,Wang, J.,Hayes, J.,Wang, M.,Paul, A.,Lansdon, E.B.,Chen, J.M.,Graupe, D.,Rhodes, G.,He, G.X.,Geleziunas, R.,Xu, L.,Kim, C.U. N1-Alkyl pyrimidinediones as non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg.Med.Chem.Lett. 2010 20 1589 1592 3LB8 20179327 Crystal structure of the covalent putidaredoxin reductase-putidaredoxin complex 2010-01-07 2010-02-23 Sevrioukova, I.F.,Poulos, T.L.,Churbanova, I.Y. Crystal structure of the putidaredoxin reductase x putidaredoxin electron transfer complex. J.Biol.Chem. 2010 285 13616 13620 3D6H Crystal structure of human caspase-1 with a naturally-occurring Asn263->Ser substitution in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK) 2008-05-19 2010-03-02 Rosen-Wolff, A.,Romanowski, M.J.,Ritter, L.,Flecks, S.,Quoos, N.,Gramatt, J.,Petzold, C.,Nguyen, H.D.,Gahr, M.,Roesler, J. Mutated, structurally altered caspase-1 with decreased enzymatic and increased RIP2-meditated inflammatory activity leads to a new type of periodic fever (ICE fever). To be Published 2008 0 0 0 3ITZ 20138761 Crystal Structure of p38a Mitogen-Activated Protein Kinase in Complex with a Pyrazolopyridazine Inhibitor 2009-08-28 2010-03-02 Wurz, R.P.,Pettus, L.H.,Henkle, B.,Sherman, L.,Plant, M.,Miner, K.,McBride, H.J.,Wong, L.M.,Saris, C.J.,Lee, M.R.,Chmait, S.,Mohr, C.,Hsieh, F.,Tasker, A.S. Part 2: Structure-activity relationship (SAR) investigations of fused pyrazoles as potent, selective and orally available inhibitors of p38alpha mitogen-activated protein kinase. Bioorg.Med.Chem.Lett. 2010 20 1680 1684 3LV0 Crystal structure of extragenic suppressor protein suhB from Bartonella henselae, native 2010-02-18 2010-03-02 Edwards, T.E.,Abendroth, J.,Sankaran, B.,Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of extragenic suppressor protein suhB from Bartonella henselae To be Published 0 0 0 0 3L95 20393564 Crystal structure of the human Notch1 Negative Regulatory Region (NRR) bound to the fab fragment of an antagonist antibody 2010-01-04 2010-03-09 Wu, Y.,Cain-Hom, C.,Choy, L.,Hagenbeek, T.J.,de Leon, G.P.,Chen, Y.,Finkle, D.,Venook, R.,Wu, X.,Ridgway, J.,Schahin-Reed, D.,Dow, G.J.,Shelton, A.,Stawicki, S.,Watts, R.J.,Zhang, J.,Choy, R.,Howard, P.,Kadyk, L.,Yan, M.,Zha, J.,Callahan, C.A.,Hymowitz, S.G.,Siebel, C.W. Therapeutic antibody targeting of individual Notch receptors. Nature 2010 464 1052 1057 3KJV 20156454 HIV-1 reverse transcriptase in complex with DNA 2009-11-03 2010-03-23 Lansdon, E.B.,Samuel, D.,Lagpacan, L.,Brendza, K.M.,White, K.L.,Hung, M.,Liu, X.,Boojamra, C.G.,Mackman, R.L.,Cihlar, T.,Ray, A.S.,McGrath, M.E.,Swaminathan, S. Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. J.Mol.Biol. 2010 397 967 978 3KK1 20156454 HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site 2009-11-04 2010-03-23 Lansdon, E.B.,Samuel, D.,Lagpacan, L.,Brendza, K.M.,White, K.L.,Hung, M.,Liu, X.,Boojamra, C.G.,Mackman, R.L.,Cihlar, T.,Ray, A.S.,McGrath, M.E.,Swaminathan, S. Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. 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J.Biol.Chem. 2010 285 18364 18375 3LDY 20541511 An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI 2010-01-13 2010-04-21 Shen, B.W.,Heiter, D.F.,Chan, S.H.,Wang, H.,Xu, S.Y.,Morgan, R.D.,Wilson, G.G.,Stoddard, B.L. Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI. Structure 2010 18 734 743 3M7K 20541511 Crystal structure of PacI-DNA Enzyme product complex 2010-03-16 2010-04-21 Shen, B.W.,Heiter, D.F.,Chan, S.H.,Wang, H.,Xu, S.Y.,Morgan, R.D.,Wilson, G.G.,Stoddard, B.L. Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI. Structure 2010 18 734 743 3H2P Human SOD1 D124V Variant 2009-04-14 2010-05-05 Seetharaman, S.V.,Winkler, D.D.,Taylor, A.B.,Cao, X.,Whitson, L.J.,Doucette, P.A.,Valentine, J.S.,Carroll, M.C.,Culotta, V.C.,Hart, P.J. Structures of Pathogenic SOD1 Mutants H80R and D124V: Disrupted Zinc-binding and Compromised Post-translational Modification by the Copper Chaperone CCS To be Published 0 0 0 0 3JWS 20337441 Structure of neuronal nitric oxide synthase R349A mutant heme domain complexed with N1-[(3' S,4'S)-4'-((6""-amino-4""-methylpyridin-2""-yl)methyl)pyrrolidin-3'-yl]-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride 2009-09-18 2010-05-05 Delker, S.L.,Ji, H.,Li, H.,Jamal, J.,Fang, J.,Xue, F.,Silverman, R.B.,Poulos, T.L. Unexpected binding modes of nitric oxide synthase inhibitors effective in the prevention of a cerebral palsy phenotype in an animal model. J.Am.Chem.Soc. 2010 132 5437 5442 3JWT 20337441 Structure of rat neuronal nitric oxide synthase R349A mutant heme domain in complex with N1-{(3'R,4'R)-4'-[(6""-amino-4""-methylpyridin-2""-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine 2009-09-18 2010-05-05 Delker, S.L.,Ji, H.,Li, H.,Jamal, J.,Fang, J.,Xue, F.,Silverman, R.B.,Poulos, T.L. Unexpected binding modes of nitric oxide synthase inhibitors effective in the prevention of a cerebral palsy phenotype in an animal model. J.Am.Chem.Soc. 2010 132 5437 5442 3JX4 20337441 Structure of rat neuronal nitric oxide synthase D597N/M336V mutant heme domain in complex with N1-{(3'R,4'S)-4'-[(6""-amino-4""-methylpyridin-2""-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine 2009-09-18 2010-05-05 Delker, S.L.,Ji, H.,Li, H.,Jamal, J.,Fang, J.,Xue, F.,Silverman, R.B.,Poulos, T.L. 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J.Med.Chem. 2010 53 4295 4299 3IBB 20690600 Propionyl-CoA Carboxylase Beta Subunit, D422A 2009-07-15 2010-06-02 Arabolaza, A.,Shillito, M.E.,Lin, T.W.,Diacovich, L.,Melgar, M.,Pham, H.,Amick, D.,Gramajo, H.,Tsai, S.C. Crystal structures and mutational analyses of acyl-CoA carboxylase beta subunit of Streptomyces coelicolor. Biochemistry 2010 49 7367 7376 3IBB 20690600 Propionyl-CoA Carboxylase Beta Subunit, D422A 2009-07-15 2010-06-02 Arabolaza, A.,Shillito, M.E.,Lin, T.W.,Diacovich, L.,Melgar, M.,Pham, H.,Amick, D.,Gramajo, H.,Tsai, S.C. Crystal structures and mutational analyses of acyl-CoA carboxylase beta subunit of Streptomyces coelicolor. Biochemistry 2010 49 7367 7376 3ML9 24900568 Discovery of the Highly Potent PI3K/mTOR Dual Inhibitor PF-04691502 through Structure Based Drug Design 2010-04-16 2010-06-02 Cheng, H.,Li, C.,Bailey, S.,Baxi, S.M.,Goulet, L.,Guo, L.,Hoffman, J.,Jiang, Y.,Johnson, T.O.,Johnson, T.W.,Knighton, D.R.,Li, J.,Liu, K.K.,Liu, Z.,Marx, M.A.,Walls, M.,Wells, P.A.,Yin, M.J.,Zhu, J.,Zientek, M. Discovery of the Highly Potent PI3K/mTOR Dual Inhibitor PF-04979064 through Structure-Based Drug Design. ACS Med Chem Lett 2013 4 91 97 3JWN 20478255 Complex of FimC, FimF, FimG and FimH 2009-09-18 2010-06-16 Le Trong, I.,Aprikian, P.,Kidd, B.A.,Forero-Shelton, M.,Tchesnokova, V.,Rajagopal, P.,Rodriguez, V.,Interlandi, G.,Klevit, R.,Vogel, V.,Stenkamp, R.E.,Sokurenko, E.V.,Thomas, W.E. Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting. Cell(Cambridge,Mass.) 2010 141 645 655 3LP6 Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A resolution 2010-02-04 2010-06-16 Kim, H.,Yu, M.,Hung, L.-W.,Terwilliger, T.C.,Kim, C.-Y. Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A Resolution To be Published 0 0 0 0 3NDN 25613812 Crystal structure of O-succinylhomoserine sulfhydrylase from Mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 2010-06-07 2010-06-16 Baugh, L.,Phan, I.,Begley, D.W.,Clifton, M.C.,Armour, B.,Dranow, D.M.,Taylor, B.M.,Muruthi, M.M.,Abendroth, J.,Fairman, J.W.,Fox, D.,Dieterich, S.H.,Staker, B.L.,Gardberg, A.S.,Choi, R.,Hewitt, S.N.,Napuli, A.J.,Myers, J.,Barrett, L.K.,Zhang, Y.,Ferrell, M.,Mundt, E.,Thompkins, K.,Tran, N.,Lyons-Abbott, S.,Abramov, A.,Sekar, A.,Serbzhinskiy, D.,Lorimer, D.,Buchko, G.W.,Stacy, R.,Stewart, L.J.,Edwards, T.E.,Van Voorhis, W.C.,Myler, P.J. Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) 2015 95 142 148 3KFE 20573955 Crystal structures of a group II chaperonin from Methanococcus maripaludis 2009-10-27 2010-06-23 Pereira, J.H.,Ralston, C.Y.,Douglas, N.R.,Meyer, D.,Knee, K.M.,Goulet, D.R.,King, J.A.,Frydman, J.,Adams, P.D. Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle. J.Biol.Chem. 2010 285 27958 27966 3NF4 25613812 Crystal structure of acyl-CoA dehydrogenase from Mycobacterium thermoresistibile bound to flavin adenine dinucleotide 2010-06-09 2010-06-23 Baugh, L.,Phan, I.,Begley, D.W.,Clifton, M.C.,Armour, B.,Dranow, D.M.,Taylor, B.M.,Muruthi, M.M.,Abendroth, J.,Fairman, J.W.,Fox, D.,Dieterich, S.H.,Staker, B.L.,Gardberg, A.S.,Choi, R.,Hewitt, S.N.,Napuli, A.J.,Myers, J.,Barrett, L.K.,Zhang, Y.,Ferrell, M.,Mundt, E.,Thompkins, K.,Tran, N.,Lyons-Abbott, S.,Abramov, A.,Sekar, A.,Serbzhinskiy, D.,Lorimer, D.,Buchko, G.W.,Stacy, R.,Stewart, L.J.,Edwards, T.E.,Van Voorhis, W.C.,Myler, P.J. Increasing the structural coverage of tuberculosis drug targets. 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Crystal structure of Cel7A from Talaromyces emersonii in complex with cellobiose TO BE PUBLISHED 0 0 0 0 3TL5 21981714 Discovery of GDC-0980: a Potent, Selective, and Orally Available Class I Phosphatidylinositol 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Kinase Inhibitor for the Treatment of Cancer 2011-08-29 2011-11-02 Sutherlin, D.P.,Bao, L.,Berry, M.,Castanedo, G.,Chuckowree, I.,Dotson, J.,Folks, A.,Friedman, L.,Goldsmith, R.,Gunzner, J.,Heffron, T.,Lesnick, J.,Lewis, C.,Mathieu, S.,Murray, J.,Nonomiya, J.,Pang, J.,Pegg, N.,Prior, W.W.,Rouge, L.,Salphati, L.,Sampath, D.,Tian, Q.,Tsui, V.,Wan, N.C.,Wang, S.,Wei, B.,Wiesmann, C.,Wu, P.,Zhu, B.Y.,Olivero, A. Discovery of a Potent, Selective, and Orally Available Class I Phosphatidylinositol 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Kinase Inhibitor (GDC-0980) for the Treatment of Cancer. J.Med.Chem. 2011 54 7579 7587 3RWP 22040023 Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1) 2011-05-09 2011-11-16 Murphy, S.T.,Alton, G.,Bailey, S.,Baxi, S.M.,Burke, B.J.,Chappie, T.A.,Ermolieff, J.,Ferre, R.,Greasley, S.,Hickey, M.,Humphrey, J.,Kablaoui, N.,Kath, J.,Kazmirski, S.,Kraus, M.,Kupchinsky, S.,Li, J.,Lingardo, L.,Marx, M.A.,Richter, D.,Tanis, S.P.,Tran, K.,Vernier, W.,Xie, Z.,Yin, M.J.,Yu, X.H. Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. 2011 54 8490 8500 3T8M Rational Design of PI3K-alpha Inhibitors that Exhibit Selectivity Over the PI3K-beta Isoform 2011-08-01 2011-11-16 Heffron, T.,Wei, B.,Olivero, A.G.,Staben, S.T.,Tsui, V.,Do, S.,Dotson, J.,Folkes, A.,Goldsmith, A.,Goldsmith, R.,Gunzner, J.,Lesnick, J.,Lewis, C.,Mathieu, S.,Nonomiya, J.,Sutherlin, D.P.,Wan, N.C.,Wang, S.,Weismann, C.,Zhu, B. 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Nat.Struct.Mol.Biol. 2012 19 212 219 3R5L 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824 2011-03-18 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3R5L 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824 2011-03-18 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3R5R 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824, with co-factor F420 2011-03-19 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3R5R 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824, with co-factor F420 2011-03-19 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3R5W 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824, with co-factor F420 2011-03-20 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3R5W 22244759 Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824, with co-factor F420 2011-03-20 2012-01-18 Cellitti, S.E.,Shaffer, J.,Jones, D.H.,Mukherjee, T.,Gurumurthy, M.,Bursulaya, B.,Boshoff, H.I.,Choi, I.,Nayyar, A.,Lee, Y.S.,Cherian, J.,Niyomrattanakit, P.,Dick, T.,Manjunatha, U.H.,Barry, C.E.,Spraggon, G.,Geierstanger, B.H. Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824. Structure 2012 20 101 112 3U30 22227388 Crystal structure of a linear-specific Ubiquitin fab bound to linear ubiquitin 2011-10-04 2012-01-18 Matsumoto, M.L.,Dong, K.C.,Yu, C.,Phu, L.,Gao, X.,Hannoush, R.N.,Hymowitz, S.G.,Kirkpatrick, D.S.,Dixit, V.M.,Kelley, R.F. Engineering and structural characterization of a linear polyubiquitin-specific antibody. J.Mol.Biol. 2012 418 134 144 3R4Y 21810409 Crystal structure of alpha-neoagarobiose hydrolase (ALPHA-NABH) from Saccharophagus degradans 2-40 2011-03-18 2012-02-01 Ha, S.C.,Lee, S.,Lee, J.,Kim, H.T.,Ko, H.J.,Kim, K.H.,Choi, I.G. Crystal structure of a key enzyme in the agarolytic pathway, alpha-neoagarobiose hydrolase from Saccharophagus degradans 2-40 Biochem.Biophys.Res.Commun. 2011 412 238 244 3UW4 22413863 Crystal structure of cIAP1 BIR3 bound to GDC0152 2011-11-30 2012-02-22 Flygare, J.A.,Beresini, M.,Budha, N.,Chan, H.,Chan, I.T.,Cheeti, S.,Cohen, F.,Deshayes, K.,Doerner, K.,Eckhardt, S.G.,Elliott, L.O.,Feng, B.,Franklin, M.C.,Reisner, S.F.,Gazzard, L.,Halladay, J.,Hymowitz, S.G.,La, H.,Lorusso, P.,Maurer, B.,Murray, L.,Plise, E.,Quan, C.,Stephan, J.P.,Young, S.G.,Tom, J.,Tsui, V.,Um, J.,Varfolomeev, E.,Vucic, D.,Wagner, A.J.,Wallweber, H.J.,Wang, L.,Ware, J.,Wen, Z.,Wong, H.,Wong, J.M.,Wong, M.,Wong, S.,Yu, R.,Zobel, K.,Fairbrother, W.J. Discovery of a Potent Small-Molecule Antagonist of Inhibitor of Apoptosis (IAP) Proteins and Clinical Candidate for the Treatment of Cancer (GDC-0152). J.Med.Chem. 2012 55 4101 4113 4DOU 22449980 Crystal Structure of a Single-chain Trimer of Human Adiponectin Globular Domain 2012-02-10 2012-02-29 Min, X.,Lemon, B.,Tang, J.,Liu, Q.,Zhang, R.,Walker, N.,Li, Y.,Wang, Z. Crystal structure of a single-chain trimer of human adiponectin globular domain. Febs Lett. 2012 586 912 917 3V7E 22355167 Crystal structure of YbxF bound to the SAM-I riboswitch aptamer 2011-12-21 2012-03-07 Baird, N.J.,Zhang, J.,Hamma, T.,Ferre-D'Amare, A.R. YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. Rna 2012 18 759 770 3UDW 22421438 Crystal structure of the immunoreceptor TIGIT in complex with Poliovirus receptor (PVR/CD155/necl-5) D1 domain 2011-10-28 2012-03-14 Stengel, K.F.,Harden-Bowles, K.,Yu, X.,Rouge, L.,Yin, J.,Comps-Agrar, L.,Wiesmann, C.,Bazan, J.F.,Eaton, D.L.,Grogan, J.L. Structure of TIGIT immunoreceptor bound to poliovirus receptor reveals a cell-cell adhesion and signaling mechanism that requires cis-trans receptor clustering. Proc.Natl.Acad.Sci.USA 2012 109 5399 5404 3UDW 22421438 Crystal structure of the immunoreceptor TIGIT in complex with Poliovirus receptor (PVR/CD155/necl-5) D1 domain 2011-10-28 2012-03-14 Stengel, K.F.,Harden-Bowles, K.,Yu, X.,Rouge, L.,Yin, J.,Comps-Agrar, L.,Wiesmann, C.,Bazan, J.F.,Eaton, D.L.,Grogan, J.L. Structure of TIGIT immunoreceptor bound to poliovirus receptor reveals a cell-cell adhesion and signaling mechanism that requires cis-trans receptor clustering. Proc.Natl.Acad.Sci.USA 2012 109 5399 5404 4DK7 22406115 Crystal structure of LXR ligand binding domain in complex with full agonist 1 2012-02-03 2012-03-21 Kopecky, D.J.,Jiao, X.Y.,Fisher, B.,McKendry, S.,Labelle, M.,Piper, D.E.,Coward, P.,Shiau, A.K.,Escaron, P.,Danao, J.,Chai, A.,Jaen, J.,Kayser, F. Discovery of a new binding mode for a series of liver X receptor agonists. Bioorg.Med.Chem.Lett. 2012 22 2407 2410 4DST 22431598 Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity 2012-02-19 2012-04-04 Maurer, T.,Garrenton, L.S.,Oh, A.,Pitts, K.,Anderson, D.J.,Skelton, N.J.,Fauber, B.P.,Pan, B.,Malek, S.,Stokoe, D.,Ludlam, M.J.,Bowman, K.K.,Wu, J.,Giannetti, A.M.,Starovasnik, M.A.,Mellman, I.,Jackson, P.K.,Rudolph, J.,Wang, W.,Fang, G. Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity. 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Plos One 2012 7 0 0 3VNT 22376051 Crystal Structure of the Kinase domain of Human VEGFR2 with a [1,3]thiazolo[5,4-b]pyridine derivative 2012-01-17 2012-04-11 Okaniwa, M.,Hirose, M.,Imada, T.,Ohashi, T.,Hayashi, Y.,Miyazaki, T.,Arita, T.,Yabuki, M.,Kakoi, K.,Kato, J.,Takagi, T.,Kawamoto, T.,Yao, S.,Sumita, A.,Tsutsumi, S.,Tottori, T.,Oki, H.,Sang, B.C.,Yano, J.,Aertgeerts, K.,Yoshida, S.,Ishikawa, T. Design and synthesis of novel DFG-out RAF/vascular endothelial growth factor receptor 2 (VEGFR2) inhibitors. 1. Exploration of [5,6]-fused bicyclic scaffolds J.Med.Chem. 2012 55 3452 3478 4DKC 22483114 Crystal Structure of Human Interleukin-34 2012-02-03 2012-04-11 Ma, X.,Lin, W.Y.,Chen, Y.,Stawicki, S.,Mukhyala, K.,Wu, Y.,Martin, F.,Bazan, J.F.,Starovasnik, M.A. Structural Basis for the Dual Recognition of Helical Cytokines IL-34 and CSF-1 by CSF-1R. 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Structure 2012 20 676 687 4D9O 22383882 Structure of ebolavirus protein VP24 from Reston 2012-01-11 2012-04-18 Zhang, A.P.P.,Bornholdt, Z.A.,Liu, T.,Abelson, D.M.,Lee, D.E.,Li, S.,Woods Jr., V.L.,Saphire, E.O. The ebola virus interferon antagonist VP24 directly binds STAT1 and has a novel, pyramidal fold Plos Pathog. 2012 8 0 0 4DH6 22468639 Structure of Bace-1 (Beta-Secretase) in Complex with (2R)-N-((2S,3R)-1-(benzo[d][1,3]dioxol-5-yl)-3-hydroxy-4-((S)-6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridine]-4'-ylamino)butan-2-yl)-2-methoxypropanamide 2012-01-27 2012-04-18 Weiss, M.M.,Williamson, T.,Babu-Khan, S.,Bartberger, M.D.,Brown, J.,Chen, K.,Cheng, Y.,Citron, M.,Croghan, M.D.,Dineen, T.A.,Esmay, J.,Graceffa, R.F.,Harried, S.S.,Hickman, D.,Hitchcock, S.A.,Horne, D.B.,Huang, H.,Imbeah-Ampiah, R.,Judd, T.,Kaller, M.R.,Kreiman, C.R.,La, D.S.,Li, V.,Lopez, P.,Louie, S.,Monenschein, H.,Nguyen, T.T.,Pennington, L.D.,Rattan, C.,San Miguel, T.,Sickmier, E.A.,Wahl, R.C.,Wen, P.H.,Wood, S.,Xue, Q.,Yang, B.H.,Patel, V.F.,Zhong, W. 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Elife 2016 5 0 0 4Z1Z 27133026 Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four 2015-03-27 2016-03-30 Lambert, A.R.,Hallinan, J.P.,Shen, B.W.,Chik, J.K.,Bolduc, J.M.,Kulshina, N.,Robins, L.I.,Kaiser, B.K.,Jarjour, J.,Havens, K.,Scharenberg, A.M.,Stoddard, B.L. Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity. Structure 2016 24 862 873 5F4R 26985324 HIV-1 gp120 complex with BNW-IV-147 2015-12-03 2016-03-30 Melillo, B.,Liang, S.,Park, J.,Schon, A.,Courter, J.R.,LaLonde, J.M.,Wendler, D.J.,Princiotto, A.M.,Seaman, M.S.,Freire, E.,Sodroski, J.,Madani, N.,Hendrickson, W.A.,Smith, A.B. Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition. ACS Med Chem Lett 2016 7 330 334 5I3V 26978477 Crystal structure of BACE1 in complex with aminoquinoline compound 1 2016-02-11 2016-03-30 Jordan, J.B.,Whittington, D.A.,Bartberger, M.D.,Sickmier, E.A.,Chen, K.,Cheng, Y.,Judd, T. 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Chem. 2017 60 3472 3483 5T2N 28637173 Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP007280 gene; harbors 38 point mutations relative to wild-type I-OnuI 2016-08-23 2017-05-03 Werther, R.,Hallinan, J.P.,Lambert, A.R.,Havens, K.,Pogson, M.,Jarjour, J.,Galizi, R.,Windbichler, N.,Crisanti, A.,Nolan, T.,Stoddard, B.L. Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity. Nucleic Acids Res. 2017 45 8621 8634 5T8D 28873986 Engineered variant of I-OnuI meganuclease targeting the HIV integrase gene; harbors 47 point mutations relative to wild-type I-OnuI 2016-09-07 2017-05-03 Niyonzima, N.,Lambert, A.R.,Werther, R.,De Silva Feelixge, H.,Roychoudhury, P.,Greninger, A.L.,Stone, D.,Stoddard, B.L.,Jerome, K.R. Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses. Protein Eng.Des.Sel. 2017 30 503 522 5UKJ 28433539 The co-structure of N,N-dimethyl-4-[(6R)-6-methyl-5-(1H-pyrrolo[2,3- b]pyridin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5- a]pyrazin-3-yl]benzenesulfonamide and a rationally designed PI3K-alpha mutant that mimics ATR 2017-01-23 2017-05-10 Lu, Y.,Knapp, M.,Crawford, K.,Warne, R.,Elling, R.,Yan, K.,Doyle, M.,Pardee, G.,Zhang, L.,Ma, S.,Mamo, M.,Ornelas, E.,Pan, Y.,Bussiere, D.,Jansen, J.,Zaror, I.,Lai, A.,Barsanti, P.,Sim, J. Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors. J. Mol. Biol. 2017 429 1684 1704 5UL1 28433539 The co-structure of 3-amino-6-(4-((1-(dimethylamino)propan-2-yl)sulfonyl)phenyl)-N-phenylpyrazine-2-carboxamide and a rationally designed PI3K-alpha mutant that mimics ATR 2017-01-23 2017-05-10 Lu, Y.,Knapp, M.,Crawford, K.,Warne, R.,Elling, R.,Yan, K.,Doyle, M.,Pardee, G.,Zhang, L.,Ma, S.,Mamo, M.,Ornelas, E.,Pan, Y.,Bussiere, D.,Jansen, J.,Zaror, I.,Lai, A.,Barsanti, P.,Sim, J. Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors. J. Mol. Biol. 2017 429 1684 1704 5URZ 28377511 Crystal structure of Frizzled 5 CRD in complex with BOG 2017-02-13 2017-05-10 Nile, A.H.,Mukund, S.,Stanger, K.,Wang, W.,Hannoush, R.N. Unsaturated fatty acyl recognition by Frizzled receptors mediates dimerization upon Wnt ligand binding. Proc. Natl. Acad. Sci. 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Lett. 2017 27 2974 2981 5VP5 Crystal structure of a 3-oxoacyl-acyl-carrier protein reductase FabG4 from Mycobacterium smegmatis bound to NAD 2017-05-04 2017-05-17 Edwards, T.E.,Mayclin, S.J.,Lorimer, D.D.,Seattle Structural Genomics Center for Infectious Disease (SSGCID) Crystal structure of a 3-oxoacyl-acyl-carrier protein reductase FabG4 from Mycobacterium smegmatis bound to NAD To Be Published 0 0 0 0 5KVL Humanized 10G4 anti-leukotriene C4 antibody Fab fragment in complex with leukotriene C4 2016-07-14 2017-05-24 Huxford, T.,King, A.,Fleming, J.K.,Wojciak, J.M. Humanized 10G4 anti-leukotriene C4 antibody Fab fragment in complex with leukotriene C4 To Be Published 0 0 0 0 5VOG Crystal Structure of a Hypothetical Protein from Neisseria gonorrhoeae with bound ppGpp 2017-05-02 2017-05-24 Dranow, D.M.,Abendroth, J.,Lorimer, D.D.,Edwards, T.E. 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Cell 2017 66 345 0 5UK8 28433539 The co-structure of (R)-4-(6-(1-(cyclopropylsulfonyl)cyclopropyl)-2-(1H-indol-4-yl)pyrimidin-4-yl)-3-methylmorpholine and a rationally designed PI3K-alpha mutant that mimics ATR 2017-01-20 2017-06-14 Lu, Y.,Knapp, M.,Crawford, K.,Warne, R.,Elling, R.,Yan, K.,Doyle, M.,Pardee, G.,Zhang, L.,Ma, S.,Mamo, M.,Ornelas, E.,Pan, Y.,Bussiere, D.,Jansen, J.,Zaror, I.,Lai, A.,Barsanti, P.,Sim, J. Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors. J. Mol. Biol. 2017 429 1684 1704 5KAE Crystal structure of human PI3K-gamma in complex with quinoline-containing inhibitor 5g 2016-06-01 2017-06-21 Gonzalez-Lopez de Turiso, F.,Hao, X.,Shin, Y.,Bui, M.,Campuzano, I.,Cardozo, M.,Dunn, M.C.,Duquette, J.,Fisher, B.,Foti, R.S.,Henne, K.,He, X.,Hu, Y.-L.,Kelly, R.C.,Johnson, M.G.,Lucas, B.S.,McCarter, J.,McGee, L.R.,Medina, J.C.,Metz, D.,San Miguel, T.,Mohn, D.,Tran, T.,Vissinga, C.,Wannberg, S.,Whittington, D.A.,Whoriskey, J.,Yu, G.,Zalameda, L.,Zhang, X.,Cushing, T.D. Discovery and in vivo evaluation of the potent and selective PI3K-delta inhibitors AM-0687 and AM-1430 To Be Published 0 0 0 0 5V76 28642439 Structure of Haliangium ochraceum BMC-T HO-3341 2017-03-17 2017-06-21 Sutter, M.,Greber, B.,Aussignargues, C.,Kerfeld, C.A. Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell. Science 2017 356 1293 1297 5KKS ROCK 1 bound to azaindole thiazole inhibitor 2016-06-22 2017-06-28 Bandarage, U.K.,Cao, J.,Come, J.H.,Court, J.J.,Gao, H.,Jacobs, M.D.,Marhefka, C.,Nanthakumar, S.,Green, J. ROCK inhibitors 3: Design, synthesis and structure-activity relationships of 7-azaindole-based Rho kinase (ROCK) inhibitors Bioorg.Med.Chem.Lett. 2018 0 0 0 5KKT ROCK 1 bound to azaindole thiazole piperazine inhibitor 2016-06-22 2017-06-28 Bandarage, U.K.,Cao, J.,Come, J.H.,Court, J.J.,Gao, H.,Jacobs, M.D.,Marhefka, C.,Nanthakumar, S.,Green, J. 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Sci Rep 2017 7 3673 3673 5UIY 29021563 Structure of Bromodomain from human BAZ1A 2017-01-16 2017-07-12 Oppikofer, M.,Sagolla, M.,Haley, B.,Zhang, H.M.,Kummerfeld, S.K.,Sudhamsu, J.,Flynn, E.M.,Bai, T.,Zhang, J.,Ciferri, C.,Cochran, A.G. Non-canonical reader modules of BAZ1A promote recovery from DNA damage. Nat Commun 2017 8 862 862 5TZ0 28692021 Structure of the Fremyella diplosiphon Fluorescence Recovery Protein 2016-11-21 2017-07-19 Bao, H.,Melnicki, M.R.,Pawlowski, E.G.,Sutter, M.,Agostoni, M.,Lechno-Yossef, S.,Cai, F.,Montgomery, B.L.,Kerfeld, C.A. Additional families of orange carotenoid proteins in the photoprotective system of cyanobacteria. Nat Plants 2017 3 17089 17089 5URJ 28586220 Crystal structure of human BRR2 in complex with T-3905516 2017-02-10 2017-07-19 Iwatani-Yoshihara, M.,Ito, M.,Klein, M.G.,Yamamoto, T.,Yonemori, K.,Tanaka, T.,Miwa, M.,Morishita, D.,Endo, S.,Tjhen, R.,Qin, L.,Nakanishi, A.,Maezaki, H.,Kawamoto, T. 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Chem. 2017 60 6942 6990 5KWW 28761099 Crystal Structure of Inhibitor JNJ-53718678 In Complex with Prefusion RSV F Glycoprotein 2016-07-19 2017-08-02 Roymans, D.,Alnajjar, S.S.,Battles, M.B.,Sitthicharoenchai, P.,Furmanova-Hollenstein, P.,Rigaux, P.,Berg, J.V.D.,Kwanten, L.,Ginderen, M.V.,Verheyen, N.,Vranckx, L.,Jaensch, S.,Arnoult, E.,Voorzaat, R.,Gallup, J.M.,Larios-Mora, A.,Crabbe, M.,Huntjens, D.,Raboisson, P.,Langedijk, J.P.,Ackermann, M.R.,McLellan, J.S.,Vendeville, S.,Koul, A. Therapeutic efficacy of a respiratory syncytial virus fusion inhibitor. Nat Commun 2017 8 167 167 5WC8 28724897 Structure of a bacterial polysialyltransferase at 2.75 Angstrom resolution 2017-06-29 2017-08-02 Lizak, C.,Worrall, L.J.,Baumann, L.,Pfleiderer, M.M.,Volkers, G.,Sun, T.,Sim, L.,Wakarchuk, W.,Withers, S.G.,Strynadka, N.C.J. X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid. Sci Rep 2017 7 5842 5842 5KYB 29249604 Crystal structure of the apo-form of USP7 catalytic domain [V302K] mutant 2016-07-21 2017-08-09 Ozen, A.,Rouge, L.,Bashore, C.,Hearn, B.R.,Skelton, N.J.,Dueber, E.C. Selectively Modulating Conformational States of USP7 Catalytic Domain for Activation. Structure 2018 26 72 0 5KYC 29249604 Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin (malonate bound) 2016-07-21 2017-08-09 Ozen, A.,Rouge, L.,Bashore, C.,Hearn, B.R.,Skelton, N.J.,Dueber, E.C. Selectively Modulating Conformational States of USP7 Catalytic Domain for Activation. Structure 2018 26 72 0 5KYE 29249604 Crystal structure of USP7 catalytic domain [H294E] mutant in complex with ubiquitin 2016-07-21 2017-08-09 Ozen, A.,Rouge, L.,Bashore, C.,Hearn, B.R.,Skelton, N.J.,Dueber, E.C. Selectively Modulating Conformational States of USP7 Catalytic Domain for Activation. 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Biol. 2017 24 717 725 5U51 28864445 Structure of Francisella tularensis heterodimeric SspA (MglA-SspA) in complex with ppGpp 2016-12-06 2017-08-16 Cuthbert, B.J.,Ross, W.,Rohlfing, A.E.,Dove, S.L.,Gourse, R.L.,Brennan, R.G.,Schumacher, M.A. Dissection of the molecular circuitry controlling virulence in Francisella tularensis. Genes Dev. 2017 31 1549 1560 5VLP 28825733 PCSK9 complex with LDLR antagonist peptide and Fab7G7 2017-04-25 2017-08-16 Zhang, Y.,Ultsch, M.,Skelton, N.J.,Burdick, D.J.,Beresini, M.H.,Li, W.,Kong-Beltran, M.,Peterson, A.,Quinn, J.,Chiu, C.,Wu, Y.,Shia, S.,Moran, P.,Di Lello, P.,Eigenbrot, C.,Kirchhofer, D. Discovery of a cryptic peptide-binding site on PCSK9 and design of antagonists. Nat. Struct. Mol. Biol. 2017 24 848 856 5X9O 28760529 Crystal structure of the BCL6 BTB domain in complex with Compound 1a 2017-03-08 2017-08-16 Yasui, T.,Yamamoto, T.,Sakai, N.,Asano, K.,Takai, T.,Yoshitomi, Y.,Davis, M.,Takagi, T.,Sakamoto, K.,Sogabe, S.,Kamada, Y.,Lane, W.,Snell, G.,Iwata, M.,Goto, M.,Inooka, H.,Sakamoto, J.I.,Nakada, Y.,Imaeda, Y. Discovery of a novel B-cell lymphoma 6 (BCL6)-corepressor interaction inhibitor by utilizing structure-based drug design Bioorg. Med. Chem. 2017 25 4876 4886 5VLO The structure of human CamKII with bound inhibitor 2017-04-25 2017-08-23 Somoza, T.J.,Villasenor, A.G. 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Chemmedchem 2021 16 942 948 7JQ2 33283984 Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI5 2020-08-10 2020-12-23 Yang, K.S.,Ma, X.R.,Ma, Y.,Alugubelli, Y.R.,Scott, D.A.,Vatansever, E.C.,Drelich, A.K.,Sankaran, B.,Geng, Z.Z.,Blankenship, L.R.,Ward, H.E.,Sheng, Y.J.,Hsu, J.C.,Kratch, K.C.,Zhao, B.,Hayatshahi, H.S.,Liu, J.,Li, P.,Fierke, C.A.,Tseng, C.K.,Xu, S.,Liu, W.R. A Quick Route to Multiple Highly Potent SARS-CoV-2 Main Protease Inhibitors*. Chemmedchem 2021 16 942 948 7JQ4 33283984 Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI7 2020-08-10 2020-12-23 Yang, K.S.,Ma, X.R.,Ma, Y.,Alugubelli, Y.R.,Scott, D.A.,Vatansever, E.C.,Drelich, A.K.,Sankaran, B.,Geng, Z.Z.,Blankenship, L.R.,Ward, H.E.,Sheng, Y.J.,Hsu, J.C.,Kratch, K.C.,Zhao, B.,Hayatshahi, H.S.,Liu, J.,Li, P.,Fierke, C.A.,Tseng, C.K.,Xu, S.,Liu, W.R. A Quick Route to Multiple Highly Potent SARS-CoV-2 Main Protease Inhibitors*. 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Nat Commun 2022 13 3112 3112 6WR7 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J33 immobile Holliday junction 2020-04-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WR9 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J32 immobile Holliday junction 2020-04-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WRC 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J31 immobile Holliday junction 2020-04-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WRI 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J28 immobile Holliday junction 2020-04-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WRJ 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J26 immobile Holliday junction 2020-04-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WSW 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J21 immobile Holliday junction 2020-05-01 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WSX 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J22 immobile Holliday junction 2020-05-01 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WSY 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J23 immobile Holliday junction 2020-05-01 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WSZ 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J24 immobile Holliday junction 2020-05-01 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6WT1 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J29 immobile Holliday junction 2020-05-01 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFE 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J21 immobile Holliday junction 2020-06-15 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFF 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J22 immobile Holliday junction 2020-06-15 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFG 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J23 immobile Holliday junction 2020-06-15 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFW 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J24 immobile Holliday junction 2020-06-16 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFX 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J26 immobile Holliday junction 2020-06-16 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFY 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J28 immobile Holliday junction 2020-06-16 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XFZ 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J29 immobile Holliday junction 2020-06-16 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XG0 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J31 immobile Holliday junction 2020-06-16 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XGJ 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J32 immobile Holliday junction 2020-06-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XGK 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J35 immobile Holliday junction 2020-06-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XGL 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J36 immobile Holliday junction 2020-06-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 6XGN 35662248 Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J33 immobile Holliday junction 2020-06-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JFU 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J5 immobile Holliday junction 2020-07-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JFV 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J7 immobile Holliday junction 2020-07-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JFW 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J10 immobile Holliday junction 2020-07-17 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JHR 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J4 immobile Holliday junction with R3 symmetry 2020-07-21 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JHT 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J31 immobile Holliday junction with R3 symmetry 2020-07-21 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JHV 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J36 immobile Holliday junction with R3 symmetry 2020-07-21 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JI6 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J34 immobile Holliday junction with R3 symmetry 2020-07-22 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JI7 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J33 immobile Holliday junction with R3 symmetry 2020-07-22 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JIP 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J22 immobile Holliday junction with R3 symmetry 2020-07-23 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJ2 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J19 immobile Holliday junction with R3 symmetry 2020-07-24 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJ4 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J14 immobile Holliday junction with R3 symmetry 2020-07-24 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJ5 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J10 immobile Holliday junction with R3 symmetry 2020-07-24 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJ6 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J8 immobile Holliday junction with R3 symmetry 2020-07-24 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJX 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J5 immobile Holliday junction with R3 symmetry 2020-07-27 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJY 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J3 immobile Holliday junction with R3 symmetry 2020-07-27 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JJZ 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J2 immobile Holliday junction 2020-07-27 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JK0 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J1 immobile Holliday junction 2020-07-27 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKD 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J1 immobile Holliday junction 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKE 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J2 immobile Holliday junction 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKG 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J3 immobile Holliday junction with R3 symmetry 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKH 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J5 immobile Holliday junction with R3 symmetry 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKJ 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J8 immobile Holliday junction with R3 symmetry 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JKK 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J10 immobile Holliday junction with R3 symmetry 2020-07-28 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JL9 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J14 immobile Holliday junction with R3 symmetry 2020-07-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JLB 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J19 immobile Holliday junction with R3 symmetry 2020-07-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JLD 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J22 immobile Holliday junction with R3 symmetry 2020-07-29 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JNK 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J33 immobile Holliday junction with R3 symmetry 2020-08-04 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun 2022 13 3112 3112 7JNL 35662248 Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J34 immobile Holliday junction with R3 symmetry 2020-08-04 2021-07-14 Simmons, C.R.,MacCulloch, T.,Krepl, M.,Matthies, M.,Buchberger, A.,Crawford, I.,Sponer, J.,Sulc, P.,Stephanopoulos, N.,Yan, H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. 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Nat Commun 2022 13 5196 5196 8DS2 36057636 Structure of SARS-CoV-2 Mpro in complex with the nsp13-nsp14 (C13) cut site sequence (form 2) 2022-07-21 2022-09-28 Lee, J.,Kenward, C.,Worrall, L.J.,Vuckovic, M.,Gentile, F.,Ton, A.T.,Ng, M.,Cherkasov, A.,Strynadka, N.C.J.,Paetzel, M. X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation. Nat Commun 2022 13 5196 5196 7U39 36192422 Structure of the apo form of Streptomyces venezuelae GlgX, the glycogen debranching enzyme 2022-02-26 2022-10-05 Schumacher, M.A.,Wormann, M.E.,Henderson, M.,Salinas, R.,Latoscha, A.,Al-Bassam, M.M.,Singh, K.S.,Barclay, E.,Gunka, K.,Tschowri, N. Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP. Nat Commun 2022 13 5834 5834 7U3A 36192422 Structure of the Streptomyces venezuelae GlgX-c-di-GMP complex 2022-02-26 2022-10-05 Schumacher, M.A.,Wormann, M.E.,Henderson, M.,Salinas, R.,Latoscha, A.,Al-Bassam, M.M.,Singh, K.S.,Barclay, E.,Gunka, K.,Tschowri, N. Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP. Nat Commun 2022 13 5834 5834 7U3D 36192422 Structure of S. venezuelae GlgX-c-di-GMP-acarbose complex (4.6) 2022-02-27 2022-10-05 Schumacher, M.A.,Wormann, M.E.,Henderson, M.,Salinas, R.,Latoscha, A.,Al-Bassam, M.M.,Singh, K.S.,Barclay, E.,Gunka, K.,Tschowri, N. Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP. Nat Commun 2022 13 5834 5834 7T97 36147680 Crystal structure of engineered CYS-CYS fab dimer CH1-207 (HC4) 2021-12-18 2022-10-12 Yin, Y.,Romei, M.G.,Sankar, K.,Pal, L.R.,Hoi, K.H.,Yang, Y.,Leonard, B.,De Leon Boenig, G.,Kumar, N.,Matsumoto, M.,Payandeh, J.,Harris, S.F.,Moult, J.,Lazar, G.A. 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Eur.J.Med.Chem. 2022 239 114522 114522 8EKO 36215733 Sperm whale myoglobin mutant L29H F33W F43H (F33W CuBMb) 2022-09-21 2022-10-26 Ledray, A.P.,Dwaraknath, S.,Chakarawet, K.,Sponholtz, M.R.,Merchen, C.,Van Stappen, C.,Rao, G.,Britt, R.D.,Lu, Y. Tryptophan Can Promote Oxygen Reduction to Water in a Biosynthetic Model of Heme Copper Oxidases. Biochemistry 2023 62 388 395 7UZT 36417907 Crystal structure of the human astrovirus MLB1 capsid protein spike domain at 1.86-A resolution 2022-05-09 2022-11-09 Delgado-Cunningham, K.,Lopez, T.,Khatib, F.,Arias, C.F.,DuBois, R.M. Structure of the divergent human astrovirus MLB capsid spike. Structure 2022 30 1573 0 7UZT 36417907 Crystal structure of the human astrovirus MLB1 capsid protein spike domain at 1.86-A resolution 2022-05-09 2022-11-09 Delgado-Cunningham, K.,Lopez, T.,Khatib, F.,Arias, C.F.,DuBois, R.M. Structure of the divergent human astrovirus MLB capsid spike. Structure 2022 30 1573 0 7SQP 37207206 Single chain trimer HLA-A*02:01 (Y108C) with HPV.16 E7 peptide YMLDLQPETTDL 2021-11-05 2022-11-23 Finton, K.A.K.,Rupert, P.B.,Friend, D.J.,Dinca, A.,Lovelace, E.S.,Buerger, M.,Rusnac, D.V.,Foote-McNabb, U.,Chour, W.,Heath, J.R.,Campbell, J.S.,Pierce, R.H.,Strong, R.K. Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol 2023 14 1170462 1170462 7SR4 37207206 Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPETTDLYC 2021-11-07 2022-11-23 Finton, K.A.K.,Rupert, P.B.,Friend, D.J.,Dinca, A.,Lovelace, E.S.,Buerger, M.,Rusnac, D.V.,Foote-McNabb, U.,Chour, W.,Heath, J.R.,Campbell, J.S.,Pierce, R.H.,Strong, R.K. Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol 2023 14 1170462 1170462 7SSH 37207206 Single chain trimer HLA-A*02:01 (Y108A) with HPV.16 E7 peptide YMLDLQPETTDLYC 2021-11-11 2022-11-23 Finton, K.A.K.,Rupert, P.B.,Friend, D.J.,Dinca, A.,Lovelace, E.S.,Buerger, M.,Rusnac, D.V.,Foote-McNabb, U.,Chour, W.,Heath, J.R.,Campbell, J.S.,Pierce, R.H.,Strong, R.K. Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol 2023 14 1170462 1170462 8EW6 36346438 Anti-human CD8 VHH complex with CD8 alpha 2022-10-21 2022-11-23 Sriraman, S.K.,Davies, C.W.,Gill, H.,Kiefer, J.R.,Yin, J.,Ogasawara, A.,Urrutia, A.,Javinal, V.,Lin, Z.,Seshasayee, D.,Abraham, R.,Haas, P.,Koth, C.,Marik, J.,Koerber, J.T.,Williams, S.P. Development of an 18 F-labeled anti-human CD8 VHH for same-day immunoPET imaging. Eur J Nucl Med Mol Imaging 2023 50 679 691 8EXU 36455032 Crystal structure of PI3K-alpha in complex with compound 30 2022-10-25 2022-11-30 Hanan, E.J.,Braun, M.G.,Heald, R.A.,MacLeod, C.,Chan, C.,Clausen, S.,Edgar, K.A.,Eigenbrot, C.,Elliott, R.,Endres, N.,Friedman, L.S.,Gogol, E.,Gu, X.H.,Thibodeau, R.H.,Jackson, P.S.,Kiefer, J.R.,Knight, J.D.,Nannini, M.,Narukulla, R.,Pace, A.,Pang, J.,Purkey, H.E.,Salphati, L.,Sampath, D.,Schmidt, S.,Sideris, S.,Song, K.,Sujatha-Bhaskar, S.,Ultsch, M.,Wallweber, H.,Xin, J.,Yeap, S.,Young, A.,Zhong, Y.,Staben, S.T. Discovery of GDC-0077 (Inavolisib), a Highly Selective Inhibitor and Degrader of Mutant PI3K alpha. J.Med.Chem. 2022 65 16589 16621 7T4I 36423823 Crystal Structure of wild type EGFR in complex with TAK-788 2021-12-10 2022-12-07 Huang, W.S.,Li, F.,Gong, Y.,Zhang, Y.,Youngsaye, W.,Xu, Y.,Zhu, X.,Greenfield, M.T.,Kohlmann, A.,Taslimi, P.M.,Toms, A.,Zech, S.G.,Zhou, T.,Das, B.,Jang, H.G.,Tugnait, M.,Ye, Y.E.,Gonzalvez, F.,Baker, T.E.,Nadworny, S.,Ning, Y.,Wardwell, S.D.,Zhang, S.,Gould, A.E.,Hu, Y.,Lane, W.,Skene, R.J.,Zou, H.,Clackson, T.,Narasimhan, N.I.,Rivera, V.M.,Dalgarno, D.C.,Shakespeare, W.C. Discovery of mobocertinib, a potent, oral inhibitor of EGFR exon 20 insertion mutations in non-small cell lung cancer. Bioorg.Med.Chem.Lett. 2022 80 129084 129084 7SKE 36579626 Myocilin OLF mutant R296H 2021-10-20 2023-01-11 Scelsi, H.F.,Hill, K.R.,Barlow, B.M.,Martin, M.D.,Lieberman, R.L. Quantitative differentiation of benign and misfolded glaucoma-causing myocilin variants on the basis of protein thermal stability. Dis Model Mech 2023 16 0 0 7U61 36513069 Crystal Structure of Anti-Nicotine Antibody NIC311 Fab Complexed with Nicotine 2022-03-03 2023-01-11 Rodarte, J.V.,Baehr, C.,Hicks, D.,Liban, T.L.,Weidle, C.,Rupert, P.B.,Jahan, R.,Wall, A.,McGuire, A.T.,Strong, R.K.,Runyon, S.,Pravetoni, M.,Pancera, M. Structures of drug-specific monoclonal antibodies bound to opioids and nicotine reveal a common mode of binding. Structure 2023 31 20 0 7U63 36513069 Crystal Structure Anti-Oxycodone Antibody HY2-A12 Fab Complexed with Oxycodone 2022-03-03 2023-01-11 Rodarte, J.V.,Baehr, C.,Hicks, D.,Liban, T.L.,Weidle, C.,Rupert, P.B.,Jahan, R.,Wall, A.,McGuire, A.T.,Strong, R.K.,Runyon, S.,Pravetoni, M.,Pancera, M. Structures of drug-specific monoclonal antibodies bound to opioids and nicotine reveal a common mode of binding. Structure 2023 31 20 0 7U64 36513069 Crystal Structure of Anti-Fentanyl Antibody HY6-F9.6 Fab Complexed with Fentanyl 2022-03-03 2023-01-11 Rodarte, J.V.,Baehr, C.,Hicks, D.,Liban, T.L.,Weidle, C.,Rupert, P.B.,Jahan, R.,Wall, A.,McGuire, A.T.,Strong, R.K.,Runyon, S.,Pravetoni, M.,Pancera, M. Structures of drug-specific monoclonal antibodies bound to opioids and nicotine reveal a common mode of binding. Structure 2023 31 20 0 8CUG 36655882 Synthetic epi-Novo29 (2R,3S), synchrotron structure 2022-05-17 2023-01-11 Krumberger, M.,Li, X.,Kreutzer, A.G.,Peoples, A.J.,Nitti, A.G.,Cunningham, A.M.,Jones, C.R.,Achorn, C.,Ling, L.L.,Hughes, D.E.,Nowick, J.S. Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29. J.Org.Chem. 2023 88 2214 2220 8DJT 36575825 Cytosolic ascorbate peroxidase from Sorghum bicolor - four ascorbates complex 2022-07-01 2023-01-18 Zhang, B.,Lewis, J.A.,Vermerris, W.,Sattler, S.E.,Kang, C. A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol. 2023 192 102 118 8DJU 36575825 Cytosolic ascorbate peroxidase from Sorghum bicolor - bicyclic dehydroascorbic acid complex 2022-07-01 2023-01-18 Zhang, B.,Lewis, J.A.,Vermerris, W.,Sattler, S.E.,Kang, C. A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol. 2023 192 102 118 8EZW 36613986 Structure of Apo ZrgA deletion 124-184 from Vibrio cholerae 2022-11-01 2023-01-18 Valencia, D.W.,Melendez, A.B.,Melendrez, I.A.,Yukl, E.T. Structure and Function of the Zinc Binding Protein ZrgA from Vibrio cholerae. Int J Mol Sci 2022 24 0 0 8F1B 36613986 Structure of zinc-bound ZrgA deletion 124-184 from Vibrio cholerae 2022-11-04 2023-01-18 Valencia, D.W.,Melendez, A.B.,Melendrez, I.A.,Yukl, E.T. Structure and Function of the Zinc Binding Protein ZrgA from Vibrio cholerae. Int J Mol Sci 2022 24 0 0 7SVK 36914755 Bile Salt Hydrolase from Lactobacillus reuteri 2021-11-19 2023-01-25 Foley, M.H.,Walker, M.E.,Stewart, A.K.,O'Flaherty, S.,Gentry, E.C.,Patel, S.,Beaty, V.V.,Allen, G.,Pan, M.,Simpson, J.B.,Perkins, C.,Vanhoy, M.E.,Dougherty, M.K.,McGill, S.K.,Gulati, A.S.,Dorrestein, P.C.,Baker, E.S.,Redinbo, M.R.,Barrangou, R.,Theriot, C.M. Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. Nat Microbiol 2023 8 611 628 7TNC 37424080 M13F/G116F Pseudomonas aeruginosa azurin 2022-01-20 2023-01-25 Liu, Y.,Marshall, N.M.,Yu, S.S.,Kim, W.,Gao, Y.G.,Robinson, H.,Nilges, M.J.,Zhang, Y.,New, S.Y.,Lu, Y. Structural Basis for the Effects of Phenylalanine on Tuning the Reduction Potential of Type 1 Copper in Azurin. Inorg.Chem. 2023 62 11618 11625 8EQH 36691781 The crystal structure of 14-3-3 Beta containing 3-nitrotyrosine at position Y213 2022-10-07 2023-01-25 Zhu, P.,Nguyen, K.T.,Estelle, A.B.,Sluchanko, N.N.,Mehl, R.A.,Cooley, R.B. Genetic encoding of 3-nitro-tyrosine reveals the impacts of 14-3-3 nitration on client binding and dephosphorylation. Protein Sci. 2023 32 0 0 8EWD 36758158 Crystal structure of CYP3A4 bound to an inhibitor 2022-10-22 2023-02-01 Denison, M.,Ahrens, J.J.,Dunbar, M.N.,Warmahaye, H.,Majeed, A.,Turro, C.,Kocarek, T.A.,Sevrioukova, I.F.,Kodanko, J.J. Dynamic Ir(III) Photosensors for the Major Human Drug-Metabolizing Enzyme Cytochrome P450 3A4. Inorg.Chem. 2023 62 3305 3320 8EWM 36758158 Crystal structure of CYP3A4 bound to an inhibitor 2022-10-24 2023-02-01 Denison, M.,Ahrens, J.J.,Dunbar, M.N.,Warmahaye, H.,Majeed, A.,Turro, C.,Kocarek, T.A.,Sevrioukova, I.F.,Kodanko, J.J. Dynamic Ir(III) Photosensors for the Major Human Drug-Metabolizing Enzyme Cytochrome P450 3A4. Inorg.Chem. 2023 62 3305 3320 8EWN 36758158 Crystal structure of CYP3A4 bound to an inhibitor 2022-10-24 2023-02-01 Denison, M.,Ahrens, J.J.,Dunbar, M.N.,Warmahaye, H.,Majeed, A.,Turro, C.,Kocarek, T.A.,Sevrioukova, I.F.,Kodanko, J.J. Dynamic Ir(III) Photosensors for the Major Human Drug-Metabolizing Enzyme Cytochrome P450 3A4. Inorg.Chem. 2023 62 3305 3320 8EWS 36758158 Crystal structure of CYP3A4 bound to an inhibitor 2022-10-24 2023-02-01 Denison, M.,Ahrens, J.J.,Dunbar, M.N.,Warmahaye, H.,Majeed, A.,Turro, C.,Kocarek, T.A.,Sevrioukova, I.F.,Kodanko, J.J. Dynamic Ir(III) Photosensors for the Major Human Drug-Metabolizing Enzyme Cytochrome P450 3A4. Inorg.Chem. 2023 62 3305 3320 8FCC 36652602 HIV-1 Reverse Transcriptase in complex with 5-membered bicyclic core NNRTI 2022-12-01 2023-02-01 Prener, L.,Baszczynski, O.,Kaiser, M.M.,Dracinsky, M.,Stepan, G.,Lee, Y.J.,Brumshtein, B.,Yu, H.,Jansa, P.,Lansdon, E.B.,Janeba, Z. Design and Synthesis of Novel HIV-1 NNRTIs with Bicyclic Cores and with Improved Physicochemical Properties. J.Med.Chem. 2023 66 1761 1777 8FCD 36652602 HIV-1 Reverse Transcriptase in complex with 6-membered bicyclic core NNRTI 2022-12-01 2023-02-01 Prener, L.,Baszczynski, O.,Kaiser, M.M.,Dracinsky, M.,Stepan, G.,Lee, Y.J.,Brumshtein, B.,Yu, H.,Jansa, P.,Lansdon, E.B.,Janeba, Z. Design and Synthesis of Novel HIV-1 NNRTIs with Bicyclic Cores and with Improved Physicochemical Properties. J.Med.Chem. 2023 66 1761 1777 8FCE 36652602 HIV-1 Reverse Transcriptase in complex with 7-membered bicyclic core NNRTI 2022-12-01 2023-02-01 Prener, L.,Baszczynski, O.,Kaiser, M.M.,Dracinsky, M.,Stepan, G.,Lee, Y.J.,Brumshtein, B.,Yu, H.,Jansa, P.,Lansdon, E.B.,Janeba, Z. Design and Synthesis of Novel HIV-1 NNRTIs with Bicyclic Cores and with Improved Physicochemical Properties. J.Med.Chem. 2023 66 1761 1777 7UOR Crystal structure of cytochrome P450 enzyme CYP119 in complex with methyliridium(III) mesoporphyrin. 2022-04-13 2023-02-22 Bloomer, B.J.,Natoli, S.N.,Garcia-Borras, M.,Pereira, J.H.,Hu, D.B.,Adams, P.D.,Houk, K.N.,Clark, D.S.,Hartwig, J.F. Mechanistic and structural characterization of an iridium-containing cytochrome reveals kinetically relevant cofactor dynamics Nat Catal 2023 6 39 51 8DPK 36862634 structure of T. brucei RESC5 2022-07-15 2023-02-22 Salinas, R.,Cannistraci, E.,Schumacher, M.A. Structure of the T. brucei kinetoplastid RNA editing substrate-binding complex core component, RESC5. Plos One 2023 18 0 0 8DEY 36863346 Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2,3) and the molecular glue DKY709 2022-06-21 2023-03-08 Bonazzi, S.,d'Hennezel, E.,Beckwith, R.E.J.,Xu, L.,Fazal, A.,Magracheva, A.,Ramesh, R.,Cernijenko, A.,Antonakos, B.,Bhang, H.C.,Caro, R.G.,Cobb, J.S.,Ornelas, E.,Ma, X.,Wartchow, C.A.,Clifton, M.C.,Forseth, R.R.,Fortnam, B.H.,Lu, H.,Csibi, A.,Tullai, J.,Carbonneau, S.,Thomsen, N.M.,Larrow, J.,Chie-Leon, B.,Hainzl, D.,Gu, Y.,Lu, D.,Meyer, M.J.,Alexander, D.,Kinyamu-Akunda, J.,Sabatos-Peyton, C.A.,Dales, N.A.,Zecri, F.J.,Jain, R.K.,Shulok, J.,Wang, Y.K.,Briner, K.,Porter, J.A.,Tallarico, J.A.,Engelman, J.A.,Dranoff, G.,Bradner, J.E.,Visser, M.,Solomon, J.M. Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy. Cell Chem Biol 2023 30 235 0 8DVN 36893429 Crystal structure of LRP6 E3E4 in complex with disulfide constrained peptide E3.10 2022-07-29 2023-03-29 Thakur, A.K.,Miller, S.E.,Liau, N.P.D.,Hwang, S.,Hansen, S.,de Sousa E Melo, F.,Sudhamsu, J.,Hannoush, R.N. Synthetic Multivalent Disulfide-Constrained Peptide Agonists Potentiate Wnt1/ beta-Catenin Signaling via LRP6 Coreceptor Clustering. Acs Chem.Biol. 2023 18 772 784 8FUL 37471626 Heterologous AibH1H2 purified from Lysogeny broth 2023-01-17 2023-04-05 Powell, M.M.,Rao, G.,Britt, R.D.,Rittle, J. Enzymatic Hydroxylation of Aliphatic C-H Bonds by a Mn/Fe Cofactor. J.Am.Chem.Soc. 2023 145 16526 16537 7TTF 37082747 Tubulin-RB3_SLD in complex with compound 12k 2022-02-01 2023-04-12 Pochampally, S.,Hartman, K.L.,Wang, R.,Wang, J.,Yun, M.K.,Parmar, K.,Park, H.,Meibohm, B.,White, S.W.,Li, W.,Miller, D.D. Design, Synthesis, and Biological Evaluation of Pyrimidine Dihydroquinoxalinone Derivatives as Tubulin Colchicine Site-Binding Agents That Displayed Potent Anticancer Activity Both In Vitro and In Vivo. Acs Pharmacol Transl Sci 2023 6 526 545 8E0L Homotrimeric variant of tcTRP9, BGL06 2022-08-09 2023-04-12 Kennedy, M.A.,Kibler, R.,Stoddard, B.L. Homotrimeric variant of tcTRP9, BGL06 To Be Published 0 0 0 0 8E0M Homotrimeric variant of tcTRP9, BGL15 2022-08-09 2023-04-12 Kibler, R.,Kennedy, M.A.,Stoddard, B.L. Homotrimeric variant of tcTRP9, BGL15 To Be Published 0 0 0 0 8E0N Homotrimeric variant of tcTRP9, BGL18 2022-08-09 2023-04-12 Kibler, R.,Kennedy, M.A.,Stoddard, B.L. Homotrimeric variant of tcTRP9, BGL18 To Be Published 0 0 0 0 8E12 Homotrimeric variant of tcTRP9, BGL14 2022-08-09 2023-04-12 Kibler, R.,Kennedy, M.A.,Stoddard, B.L. Homotrimeric variant of tcTRP9, BGL14 To Be Published 0 0 0 0 7UNI De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM 2022-04-11 2023-04-19 Kennedy, M.A.,Stoddard, B.L.,Ennist, N.M. De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM To Be Published 0 0 0 0 7UNJ De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM 2022-04-11 2023-04-19 Kennedy, M.A.,Stoddard, B.L.,Ennist, N.M. De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM To Be Published 0 0 0 0 7TYP TEAD2 bound to GNE-7883 2022-02-14 2023-05-03 Hagenbeek, T.J.,Zbieg, J.R.,Noland, C.L.,Yao, X.,Schmidt, S.,Clausen, S.,Steffek, M.,Lee, W.,Beroza, P.,Martin, S.,Lin, E.,Fong, R.,Di Lello, P.,Kubala, M.H.,Lacap, J.A.,Yang, M.N.Y.,Maddalo, D.,Lau, J.T.,An, L.,Levy, E.,Lorenzo, M.N.,Lee, H.J.,Pham, T.H.,Modrusan, Z.,Zang, R.,Chen, Y.C.,Li, J.,Hafner, M.,Chang, M.T.,Crawford, J.J.,Dey, A. Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers To Be Published 0 0 0 0 7TYQ TEAD2 bound to Compound 1 2022-02-14 2023-05-03 Hagenbeek, T.J.,Zbieg, J.R.,Noland, C.L.,Yao, X.,Schmidt, S.,Clausen, S.,Steffek, M.,Lee, W.,Beroza, P.,Martin, S.,Lin, E.,Fong, R.,Di Lello, P.,Kubala, M.H.,Lacap, J.A.,Yang, M.N.Y.,Maddalo, D.,Lau, J.T.,An, L.,Levy, E.,Lorenzo, M.N.,Lee, H.J.,Pham, T.H.,Modrusan, Z.,Zang, R.,Chen, Y.C.,Li, J.,Hafner, M.,Chang, M.T.,Crawford, J.J.,Dey, A. Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers To Be Published 0 0 0 0 7TYU TEAD2 bound to Compound 2 2022-02-14 2023-05-03 Hagenbeek, T.J.,Zbieg, J.R.,Noland, C.L.,Yao, X.,Schmidt, S.,Clausen, S.,Steffek, M.,Lee, W.,Beroza, P.,Martin, S.,Lin, E.,Fong, R.,Di Lello, P.,Kubala, M.H.,Lacap, J.A.,Yang, M.N.Y.,Maddalo, D.,Lau, J.T.,An, L.,Levy, E.,Lorenzo, M.N.,Lee, H.J.,Pham, T.H.,Modrusan, Z.,Zang, R.,Chen, Y.C.,Li, J.,Hafner, M.,Chang, M.T.,Crawford, J.J.,Dey, A. Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers To Be Published 0 0 0 0 7UY4 Aminoglycoside-modifying enzyme ANT-3,9 in complex with spectinomycin and AMP-PNP 2022-05-06 2023-05-10 Das, N.,Reeve, S.M.,Lee, R.E. Characterization of the spectinomycin deactivating enzyme ANT-3,9 To Be Published 0 0 0 0 8EYU 37221204 Structure of Beetroot dimer bound to DFAME 2022-10-28 2023-05-31 Passalacqua, L.F.M.,Starich, M.R.,Link, K.A.,Wu, J.,Knutson, J.R.,Tjandra, N.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun 2023 14 2969 2969 8F0N 37221204 Wobble Beetroot (A16U-U38G) dimer bound to DFHO 2022-11-03 2023-05-31 Passalacqua, L.F.M.,Starich, M.R.,Link, K.A.,Wu, J.,Knutson, J.R.,Tjandra, N.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun 2023 14 2969 2969 8CXC Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics 2022-05-20 2023-06-07 Lin, I.,Rupert, P.B.,Pilat, K.,Ruff, R.O.,Friend, D.J.,Chan, M.K.,Clarke, M.,Hoffstrom, B.G.,Carter, J.,Meshinchi, S.,Bandaranayake, A.D.,Mehlin, C.,Olson, J.M.,Strong, R.K.,Correnti, C.E. Novel mesothelin antibodies enable crystallography of the intact mesothelin ectodomain and engineering of potent, T cell-engaging bispecific therapeutics Front. Drug Discov. 2023 3 0 0 8CYH Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics 2022-05-23 2023-06-07 Lin, I.,Rupert, P.B.,Pilat, K.,Ruff, R.O.,Friend, D.J.,Chan, M.K.,Clarke, M.,Hoffstrom, B.G.,Carter, J.,Meshinchi, S.,Bandaranayake, A.D.,Mehlin, C.,Olson, J.M.,Strong, R.K.,Correnti, C.E. Novel mesothelin antibodies enable crystallography of the intact mesothelin ectodomain and engineering of potent, T cell-engaging bispecific therapeutics Front. Drug Discov. 2023 3 0 0 8CZ8 Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics 2022-05-24 2023-06-07 Lin, I.,Rupert, P.B.,Pilat, K.,Ruff, R.O.,Friend, D.J.,Chan, M.K.,Clarke, M.,Hoffstrom, B.G.,Carter, J.,Meshinchi, S.,Bandaranayake, A.D.,Mehlin, C.,Olson, J.M.,Strong, R.K.,Correnti, C.E. Novel mesothelin antibodies enable crystallography of the intact mesothelin ectodomain and engineering of potent, T cell-engaging bispecific therapeutics Front. Drug Discov. 2023 3 0 0 8DI7 CMY-2 2022-06-28 2023-06-14 Ahmadvand, P.,Call, D.R. Structural characterization of CMY-2 and its interactions with ampicillin and the cephalosporins - ceftiofur, DFC, DFC-dimer, DFC-cysteine, and nitrocefin To Be Published 0 0 0 0 8EJ8 37352101 Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAAAGGAAGTGGG) 2022-09-16 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EK3 37352101 Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAATGGGG) 2022-09-19 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EK8 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAGAAGGG) 2022-09-20 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EKJ 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAAGTGGG) 2022-09-21 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EKV 37352101 Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGATGTGGG) 2022-09-22 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8EMD 37352101 Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAAGTGGG) 2022-09-27 2023-07-05 Terrell, J.R.,Taylor, S.J.,Schneider, A.L.,Lu, Y.,Vernon, T.N.,Xhani, S.,Gumpper, R.H.,Luo, M.,Wilson, W.D.,Steidl, U.,Poon, G.M.K. DNA selection by the master transcription factor PU.1. Cell Rep 2023 42 112671 112671 8FZZ 37345922 Phocaeicola vulgatus type VI secretion system Ntox15 effector and immunity Tde2/Tdi2 2023-01-30 2023-07-05 Bosch, D.E.,Abbasian, R.,Parajuli, B.,Peterson, S.B.,Mougous, J.D. Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales. Mbio 2023 14 0 0 8G0K 37345922 Bacteroides multispecies type VI secretion system Ntox15 domain effector and immunity Tde1/Tdi1 2023-01-31 2023-07-05 Bosch, D.E.,Abbasian, R.,Parajuli, B.,Peterson, S.B.,Mougous, J.D. Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales. Mbio 2023 14 0 0 8SJI 37352018 Apo Structure of Computationally Designed Homotrimer TP1 2023-04-18 2023-07-05 Hoffnagle, A.M.,Tezcan, F.A. Atomically Accurate Design of Metalloproteins with Predefined Coordination Geometries. J.Am.Chem.Soc. 2023 145 14208 14214 8SBC 37399505 Co-structure of Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform and brain penetrant inhibitors 2023-04-03 2023-07-19 Bonazzi, S.,Gray, A.,Thomsen, N.M.,Biag, J.,Labbe-Giguere, N.,Keaney, E.P.,Malik, H.A.,Sun, Y.,Nunez, J.,Karki, R.G.,Knapp, M.,Elling, R.,Fuller, J.,Pardee, G.,Craig, L.,Capre, K.,Salas, S.,Gorde, A.,Liang, G.,Lubicka, D.,McTighe, S.M.,Goold, C.,Liu, S.,Deng, L.,Hong, J.,Fekete, A.,Stadelmann, P.,Frieauff, W.,Elhajouji, A.,Bauer, D.,Lerchner, A.,Radetich, B.,Furet, P.,Piizzi, G.,Burdette, D.,Wilson, C.J.,Peukert, S.,Hamann, L.G.,Murphy, L.O.,Curtis, D. Identification of Brain-Penetrant ATP-Competitive mTOR Inhibitors for CNS Syndromes. J.Med.Chem. 2023 66 9095 9119 8SBJ 37399505 Co-structure Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform complexed with brain penetrant inhibitors 2023-04-03 2023-07-19 Bonazzi, S.,Gray, A.,Thomsen, N.M.,Biag, J.,Labbe-Giguere, N.,Keaney, E.P.,Malik, H.A.,Sun, Y.,Nunez, J.,Karki, R.G.,Knapp, M.,Elling, R.,Fuller, J.,Pardee, G.,Craig, L.,Capre, K.,Salas, S.,Gorde, A.,Liang, G.,Lubicka, D.,McTighe, S.M.,Goold, C.,Liu, S.,Deng, L.,Hong, J.,Fekete, A.,Stadelmann, P.,Frieauff, W.,Elhajouji, A.,Bauer, D.,Lerchner, A.,Radetich, B.,Furet, P.,Piizzi, G.,Burdette, D.,Wilson, C.J.,Peukert, S.,Hamann, L.G.,Murphy, L.O.,Curtis, D. Identification of Brain-Penetrant ATP-Competitive mTOR Inhibitors for CNS Syndromes. J.Med.Chem. 2023 66 9095 9119 8DA3 37499032 Coevolved affibody-Z domain pair LL1.c1 2022-06-13 2023-07-26 Yang, A.,Jude, K.M.,Lai, B.,Minot, M.,Kocyla, A.M.,Glassman, C.R.,Nishimiya, D.,Kim, Y.S.,Reddy, S.T.,Khan, A.A.,Garcia, K.C. Deploying synthetic coevolution and machine learning to engineer protein-protein interactions. Science 2023 381 0 0 8G1P 37443112 Co-crystal structure of Compound 11 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB 2023-02-02 2023-07-26 Wurz, R.P.,Rui, H.,Dellamaggiore, K.,Ghimire-Rijal, S.,Choi, K.,Smither, K.,Amegadzie, A.,Chen, N.,Li, X.,Banerjee, A.,Chen, Q.,Mohl, D.,Vaish, A. Affinity and cooperativity modulate ternary complex formation to drive targeted protein degradation. Nat Commun 2023 14 4177 4177 8G1Q 37443112 Co-crystal structure of Compound 1 in complex with the bromodomain of human SMARCA4 and pVHL:ElonginC:ElonginB 2023-02-02 2023-07-26 Wurz, R.P.,Rui, H.,Dellamaggiore, K.,Ghimire-Rijal, S.,Choi, K.,Smither, K.,Amegadzie, A.,Chen, N.,Li, X.,Banerjee, A.,Chen, Q.,Mohl, D.,Vaish, A. Affinity and cooperativity modulate ternary complex formation to drive targeted protein degradation. Nat Commun 2023 14 4177 4177 8DWD Adenine glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with an AP site generated by the enzyme acting on purine 2022-08-01 2023-08-09 Russelburg, L.P.,Demir, M.,Cedeno, K.,David, S.S.,Horvath, M.P. Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY To Be Published 0 0 0 0 8E1O Crystal structure of hTEAD2 bound to a methoxypyridine lipid pocket binder 2022-08-10 2023-08-16 Pham, T.,Pahuja, K.,Hagenbeek, T.,Zbieg, Z.,Noland, C.L.,Pham, V.C.,Yao, X.,Rose, C.,Browder, K.,Lee, H.J.,Yu, M.,Chu, M.L.,Martin, S.,Verschueren, E.,Li, J.,Kubala, M.,Fong, R.,Lorenzo, M.,Beroza, P.,Hsu, P.,Paul, S.,Villemure, E.,Lee, W.,Cheung, T.,Clausen, S.,Lacap, J.,Liang, Y.,Schmidt, S.,Modrusan, Z.,Cohen, M.,Crawford, J.,Jasper, H.,Ashworth, A.,Lill, J.R.,Malek, S.,Rudolph, J.,Wertz, I.,Chang, M.,Ye, X.,Dey, A. Targeting the Hippo pathway in cancers via ubiquitination dependent TEAD degradation Biorxiv 2024 0 0 0 8ECP R16A PA0709 with BME modifications 2022-09-02 2023-09-27 Cuthbert, B.J.,Goulding, C.W.,Ulijasz, A.T. Structural characterization of PA0709 To Be Published 0 0 0 0 8ECX PA0709 with glyoxal and BME modifications 2022-09-02 2023-09-27 Cuthbert, B.J.,Goulding, C.W.,Ulijasz, A.T. Structural characterization of PA0709 To Be Published 0 0 0 0 8SMS 37829009 Crosslinked Crystal Structure of Type II Fatty Acid Synthase, FabB, and cerulenin crosslinker-crypto Acyl Carrier Protein, AcpP 2023-04-26 2023-09-27 Jiang, Z.,Chen, A.,Chen, J.,Sekhon, A.,Louie, G.V.,Noel, J.P.,La Clair, J.J.,Burkart, M.D. Masked cerulenin enables a dual-site selective protein crosslink. Chem Sci 2023 14 10925 10933 8EWV 37919549 DNA-encoded library (DEL)-enabled discovery of proximity inducing small molecules 2022-10-24 2023-10-04 Mason, J.W.,Chow, Y.T.,Hudson, L.,Tutter, A.,Michaud, G.,Westphal, M.V.,Shu, W.,Ma, X.,Tan, Z.Y.,Coley, C.W.,Clemons, P.A.,Bonazzi, S.,Berst, F.,Briner, K.,Liu, S.,Zecri, F.J.,Schreiber, S.L. DNA-encoded library-enabled discovery of proximity-inducing small molecules. Nat.Chem.Biol. 2024 20 170 179 8FGK 37433128 Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 6-(5-(2-(diethylamino)ethyl)-2,3-difluorophenethyl)-4-methylpyridin-2-amine 2022-12-12 2023-10-11 Vasu, D.,Do, H.T.,Li, H.,Hardy, C.D.,Awasthi, A.,Poulos, T.L.,Silverman, R.B. Potent, Selective, and Membrane Permeable 2-Amino-4-Substituted Pyridine-Based Neuronal Nitric Oxide Synthase Inhibitors. J.Med.Chem. 2023 66 9934 9953 8FGR 37433128 Structure of human endothelial nitric oxide synthase heme domain in complex with 6-(5-(2-aminoethyl)-2,3-difluorophenethyl)-4-methylpyridin-2-amine 2022-12-12 2023-10-11 Vasu, D.,Do, H.T.,Li, H.,Hardy, C.D.,Awasthi, A.,Poulos, T.L.,Silverman, R.B. Potent, Selective, and Membrane Permeable 2-Amino-4-Substituted Pyridine-Based Neuronal Nitric Oxide Synthase Inhibitors. J.Med.Chem. 2023 66 9934 9953 8FGT 37433128 Structure of human endothelial nitric oxide synthase heme domain in complex with 6-(2,3-difluoro-5-(2-(4-methylpiperazin-1-yl)ethyl)phenethyl)-4-methylpyridin-2-amine 2022-12-12 2023-10-11 Vasu, D.,Do, H.T.,Li, H.,Hardy, C.D.,Awasthi, A.,Poulos, T.L.,Silverman, R.B. Potent, Selective, and Membrane Permeable 2-Amino-4-Substituted Pyridine-Based Neuronal Nitric Oxide Synthase Inhibitors. J.Med.Chem. 2023 66 9934 9953 8ENJ 37776574 Design, synthesis, biological evaluation, and X-ray crystallography of diarylpyrazole derivatives possessing terminal arylsulfonamide moieties as anti-proliferative agents targeting c-Jun N-terminal kinase (JNK) 2022-09-30 2023-10-18 Mersal, K.I.,Abdel-Maksoud, M.S.,Ali, E.M.H.,Ammar, U.M.,Zaraei, S.O.,Haque, M.M.,Das, T.,Hassan, N.F.,Kim, E.E.,Lee, J.S.,Park, H.,Lee, K.H.,El-Gamal, M.I.,Kim, H.K.,Ibrahim, T.M.,Oh, C.H. Evaluation of novel pyrazol-4-yl pyridine derivatives possessing arylsulfonamide tethers as c-Jun N-terminal kinase (JNK) inhibitors in leukemia cells. Eur.J.Med.Chem. 2023 261 115779 115779 8ERD Cyclin-free CDK2 in complex with Cpd17 2022-10-11 2023-10-18 Murray, J.M.,Oh, A. Cyclin-free CDK2 in complex with Cpd17 To Be Published 0 0 0 0 8ERN Cyclin-free CDK2 in complex with Cpd21 2022-10-12 2023-10-18 Murray, J.M.,Oh, A. Cyclin-free CDK2 in complex with Cpd21 To Be Published 0 0 0 0 8SKY 38047707 Crystal structure of YisK from Bacillus subtilis in complex with oxalate 2023-04-20 2023-11-01 Guo, T.,Sperber, A.M.,Krieger, I.V.,Duan, Y.,Chemelewski, V.R.,Sacchettini, J.C.,Herman, J.K. Bacillus subtilis YisK possesses oxaloacetate decarboxylase activity and exhibits Mbl-dependent localization. J.Bacteriol. 2024 206 0 0 8SUA 37945601 Structure of M. baixiangningiae DarR-ligand complex 2023-05-11 2023-11-01 Schumacher, M.A.,Lent, N.,Chen, V.B.,Salinas, R. Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun 2023 14 7239 7239 8SUK 37945601 Structure of Rhodococcus sp. USK13 DarR-c-di-AMP complex 2023-05-12 2023-11-01 Schumacher, M.A.,Lent, N.,Chen, V.B.,Salinas, R. Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun 2023 14 7239 7239 8SV6 37945601 Structure of the M. smegmatis DarR protein 2023-05-15 2023-11-01 Schumacher, M.A.,Lent, N.,Chen, V.B.,Salinas, R. Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun 2023 14 7239 7239 8SVA 37945601 Structure of the Rhodococcus sp. USK13 DarR-20 bp DNA complex 2023-05-15 2023-11-01 Schumacher, M.A.,Lent, N.,Chen, V.B.,Salinas, R. Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun 2023 14 7239 7239 8TGE 37968329 Crystal structure of the Methanosarcina mazei glutamine synthetase in complex with GlnK1 2023-07-12 2023-11-15 Schumacher, M.A.,Salinas, R.,Travis, B.A.,Singh, R.R.,Lent, N. M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation. Nat Commun 2023 14 7375 7375 8U8P 37926680 S292F Streptomyces coelicolor Laccase 2023-09-18 2023-11-15 Wang, J.X.,Vilbert, A.C.,Cui, C.,Mirts, E.N.,Williams, L.H.,Kim, W.,Jessie Zhang, Y.,Lu, Y. Increasing Reduction Potentials of Type 1 Copper Center and Catalytic Efficiency of Small Laccase from Streptomyces coelicolor through Secondary Coordination Sphere Mutations. Angew.Chem.Int.Ed.Engl. 2023 62 0 0 8U8R 37926680 Y229F/V290N/S292F Streptomyces coelicolor Laccase 2023-09-18 2023-11-15 Wang, J.X.,Vilbert, A.C.,Cui, C.,Mirts, E.N.,Williams, L.H.,Kim, W.,Jessie Zhang, Y.,Lu, Y. Increasing Reduction Potentials of Type 1 Copper Center and Catalytic Efficiency of Small Laccase from Streptomyces coelicolor through Secondary Coordination Sphere Mutations. Angew.Chem.Int.Ed.Engl. 2023 62 0 0 8UFJ 37968329 Structure of M. mazei GS(R167L-A168G) apo form 2023-10-04 2023-11-15 Schumacher, M.A.,Salinas, R.,Travis, B.A.,Singh, R.R.,Lent, N. M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation. Nat Commun 2023 14 7375 7375 8SMH 38042148 Chimeric ETS-domain of murine PU.1 harboring the corresponding beta-strand 3 (S3) residues from murine Ets-1 in complex with d(AATAAGCGGAAGTGGG) 2023-04-26 2023-11-29 Vernon, T.N.,Terrell, J.R.,Albrecht, A.V.,Germann, M.W.,Wilson, W.D.,Poon, G.M.K. Dissection of integrated readout reveals the structural thermodynamics of DNA selection by transcription factors. Structure 2024 32 83 0 8SP1 38042148 Chimeric ETS-domain of murine PU.1 harboring the corresponding beta-strand 3 (S3) residues from murine Ets-1 in complex with d(AATAAGCGIAAGTGGG) 2023-05-01 2023-11-29 Vernon, T.N.,Terrell, J.R.,Albrecht, A.V.,Germann, M.W.,Wilson, W.D.,Poon, G.M.K. Dissection of integrated readout reveals the structural thermodynamics of DNA selection by transcription factors. Structure 2024 32 83 0 8TP8 38142455 Structure of the C. crescentus WYL-activator, DriD, bound to ssDNA and cognate DNA 2023-08-04 2023-11-29 Schumacher, M.A.,Cannistraci, E.,Salinas, R.,Lloyd, D.,Messner, E.,Gozzi, K. Structure of the WYL-domain containing transcription activator, DriD, in complex with ssDNA effector and DNA target site. Nucleic Acids Res. 2024 52 1435 1449 8TPK 38142455 P6522 crystal form of C. crescentus DriD-ssDNA-DNA complex 2023-08-04 2023-11-29 Schumacher, M.A.,Cannistraci, E.,Salinas, R.,Lloyd, D.,Messner, E.,Gozzi, K. Structure of the WYL-domain containing transcription activator, DriD, in complex with ssDNA effector and DNA target site. Nucleic Acids Res. 2024 52 1435 1449 8SZ3 37988652 Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 7j 2023-05-26 2023-12-06 Jackson, J.J.,Siegmund, A.C.,Bai, W.J.,Reed, A.B.,Birkholz, A.B.,Campuzano, I.D.G.,Crequer-Grandhomme, A.,Hu, R.,Modak, R.V.,Sudom, A.,Javier, N.,Sanders, C.,Lo, M.C.,Xie, F.,Cee, V.J.,Manzanillo, P.,Allen, J.G. Imidazolone as an Amide Bioisostere in the Development of beta-1,3- N -Acetylglucosaminyltransferase 2 (B3GNT2) Inhibitors. J.Med.Chem. 2023 66 16120 16140 8TIC 37988652 Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 1 2023-07-19 2023-12-06 Jackson, J.J.,Siegmund, A.C.,Bai, W.J.,Reed, A.B.,Birkholz, A.B.,Campuzano, I.D.G.,Crequer-Grandhomme, A.,Hu, R.,Modak, R.V.,Sudom, A.,Javier, N.,Sanders, C.,Lo, M.C.,Xie, F.,Cee, V.J.,Manzanillo, P.,Allen, J.G. Imidazolone as an Amide Bioisostere in the Development of beta-1,3- N -Acetylglucosaminyltransferase 2 (B3GNT2) Inhibitors. J.Med.Chem. 2023 66 16120 16140 8TJC 37988652 Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 8a 2023-07-20 2023-12-06 Jackson, J.J.,Siegmund, A.C.,Bai, W.J.,Reed, A.B.,Birkholz, A.B.,Campuzano, I.D.G.,Crequer-Grandhomme, A.,Hu, R.,Modak, R.V.,Sudom, A.,Javier, N.,Sanders, C.,Lo, M.C.,Xie, F.,Cee, V.J.,Manzanillo, P.,Allen, J.G. Imidazolone as an Amide Bioisostere in the Development of beta-1,3- N -Acetylglucosaminyltransferase 2 (B3GNT2) Inhibitors. J.Med.Chem. 2023 66 16120 16140 8F99 Compound 10 bound to procaspase-6 2022-11-23 2023-12-13 Fan, P.,Zhao, Y.,Renslo, A.R.,Arkin, M.R. A Comprehensive Empirical-Computational Study of Diverse Heteroarene Stacking Interactions Under Physiological Conditions To Be Published 0 0 0 0 8UK9 38177685 Structure of T4 Bacteriophage clamp loader mutant D110C bound to the T4 clamp, primer-template DNA, and ATP analog 2023-10-12 2023-12-13 Marcus, K.,Huang, Y.,Subramanian, S.,Gee, C.L.,Gorday, K.,Ghaffari-Kashani, S.,Luo, X.R.,Zheng, L.,O'Donnell, M.,Subramaniam, S.,Kuriyan, J. Autoinhibition of a clamp-loader ATPase revealed by deep mutagenesis and cryo-EM. Nat.Struct.Mol.Biol. 2024 31 424 435 8T7B 37987645 Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5) 2023-06-20 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8T7X 37987645 Sequence specific (AATT) orientation of DAPI molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x5) 2023-06-21 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TA8 37987645 Sequence specific (AATT) orientation of netropsin molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6) 2023-06-26 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TAM 37987645 Sequence specific (AATT) orientation of Hoechst molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6) 2023-06-27 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TAP 37987645 Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6) 2023-06-27 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TAQ 37987645 Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6) 2023-06-27 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TB8 37987645 Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5) 2023-06-28 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TBD 37987645 Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5) 2023-06-28 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TC2 37987645 Sequence specific (AATT) orientation of netropsin molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x5) 2023-06-29 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8TC4 37987645 Sequence specific (TGTCA) orientation of ImPyPy molecules at a unique minor groove binding site within a self-assembled 3D DNA lattice (4x5) 2023-06-29 2023-12-20 Simmons, C.R.,Buchberger, A.,Henry, S.J.W.,Novacek, A.,Fahmi, N.E.,MacCulloch, T.,Stephanopoulos, N.,Yan, H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. J.Am.Chem.Soc. 2023 145 26075 26085 8U17 38086859 The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-long bound to Pomalidomide 2023-08-30 2023-12-27 Ma, X.,Leon, B.,Ornelas, E.,Dovala, D.,Tandeske, L.,Luu, C.,Pardee, G.,Widger, S.,Solomon, J.M.,Beckwith, R.E.J.,Moser, H.,Clifton, M.C.,Wartchow, C.A. Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep 2023 13 22088 22088 8GJC 38163326 X-ray crystallographic structure of a beta-hairpin peptide derived from Abeta 17-35. (ORN)LVFFAED(ORN)GAI(N-Me-Ile)GLM 2023-03-15 2024-01-17 Ruttenberg, S.M.,Kreutzer, A.G.,Truex, N.L.,Nowick, J.S. beta-Hairpin Alignment Alters Oligomer Formation in A beta-Derived Peptides. Biochemistry 2024 63 212 218 8FW0 38326294 MtrR from Neisseria gonorrhoeae bound to beta-Estradiol 2023-01-20 2024-01-24 Hooks, G.M.,Ayala, J.C.,Holley, C.L.,Dhulipala, V.,Beggs, G.A.,Perfect, J.R.,Schumacher, M.A.,Shafer, W.M.,Brennan, R.G. Hormonal steroids induce multidrug resistance and stress response genes in Neisseria gonorrhoeae by binding to MtrR. Nat Commun 2024 15 1153 1153 8FW3 38326294 MtrR from Neisseria gonorrhoeae bound to Testosterone 2023-01-20 2024-01-24 Hooks, G.M.,Ayala, J.C.,Holley, C.L.,Dhulipala, V.,Beggs, G.A.,Perfect, J.R.,Schumacher, M.A.,Shafer, W.M.,Brennan, R.G. Hormonal steroids induce multidrug resistance and stress response genes in Neisseria gonorrhoeae by binding to MtrR. Nat Commun 2024 15 1153 1153 8U20 38151801 A Highly Stable Variant of Corynactis Californica Green Fluorescent Protein, ccGFP 5 2023-09-05 2024-01-31 Hung, L.W.,Terwilliger, T.C.,Waldo, G.S.,Nguyen, H.B. Engineering highly stable variants of Corynactis californica green fluorescent proteins. Protein Sci. 2024 33 0 0 8U23 38151801 A Highly Stable Variant of Corynactis Californica Green Fluorescent Protein, ccGFP 8 2023-09-05 2024-01-31 Hung, L.W.,Terwilliger, T.C.,Waldo, G.S.,Nguyen, H.B. Engineering highly stable variants of Corynactis californica green fluorescent proteins. Protein Sci. 2024 33 0 0 8U24 38151801 A Highly Stable Variant of Corynactis Californica Green Fluorescent Protein, ccGFP 9 2023-09-05 2024-01-31 Hung, L.W.,Terwilliger, T.C.,Waldo, G.S.,Nguyen, H.B. Engineering highly stable variants of Corynactis californica green fluorescent proteins. Protein Sci. 2024 33 0 0 8U2D 38300987 Bruton's tyrosine kinase in complex with N-[(2R)-1-[(3R)-3-(methylcarbamoyl)-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-2-yl]-3-(3-methylphenyl)-1-oxopropan-2-yl]-1H-indazole-5-carboxamide 2023-09-05 2024-01-31 Robbins, D.W.,Noviski, M.A.,Tan, Y.S.,Konst, Z.A.,Kelly, A.,Auger, P.,Brathaban, N.,Cass, R.,Chan, M.L.,Cherala, G.,Clifton, M.C.,Gajewski, S.,Ingallinera, T.G.,Karr, D.,Kato, D.,Ma, J.,McKinnell, J.,McIntosh, J.,Mihalic, J.,Murphy, B.,Panga, J.R.,Peng, G.,Powers, J.,Perez, L.,Rountree, R.,Tenn-McClellan, A.,Sands, A.T.,Weiss, D.R.,Wu, J.,Ye, J.,Guiducci, C.,Hansen, G.,Cohen, F. Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton's Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. J.Med.Chem. 2024 67 2321 2336 8U2E 38300987 Bruton's tyrosine kinase in complex with N-[(2R)-1-[(3R)-3-(methylcarbamoyl)-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-2-yl]-3-(3-methylphenyl)-1-oxopropan-2-yl]-1H-indazole-5-carboxamide 2023-09-05 2024-01-31 Robbins, D.W.,Noviski, M.A.,Tan, Y.S.,Konst, Z.A.,Kelly, A.,Auger, P.,Brathaban, N.,Cass, R.,Chan, M.L.,Cherala, G.,Clifton, M.C.,Gajewski, S.,Ingallinera, T.G.,Karr, D.,Kato, D.,Ma, J.,McKinnell, J.,McIntosh, J.,Mihalic, J.,Murphy, B.,Panga, J.R.,Peng, G.,Powers, J.,Perez, L.,Rountree, R.,Tenn-McClellan, A.,Sands, A.T.,Weiss, D.R.,Wu, J.,Ye, J.,Guiducci, C.,Hansen, G.,Cohen, F. Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton's Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. J.Med.Chem. 2024 67 2321 2336 8UAB SARS-CoV-2 main protease (Mpro) complex with AC1115 2023-09-20 2024-02-07 DuPrez, K.T.,Chao, A.,Han, F.Q. SARS-CoV-2 main protease (Mpro) complex with AC1115 To Be Published 0 0 0 0 8TJT 38269489 The Fab fragment of an anti-glucagon receptor (GCGR) antibody 2023-07-24 2024-02-14 Dai, J.,Izadi, S.,Zarzar, J.,Wu, P.,Oh, A.,Carter, P.J. Variable domain mutational analysis to probe the molecular mechanisms of high viscosity of an IgG 1 antibody. Mabs 2024 16 2304282 2304282 8TDR Crystal structure of the methyltransferase domain of DNMT3A homotetramer 2023-07-04 2024-03-13 Lu, J.W.,Song, J.K. Crystal structure of the homo-tetrameric DNMT3A methyltransferase domain To Be Published 0 0 0 0 8UFQ 38417024 Structure of human neuronal nitric oxide synthase R354A/G357D/E597Q mutant heme domain obtained after soaking crystal with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride 2023-10-04 2024-03-13 Li, H.,Hardy, C.D.,Reidl, C.T.,Jing, Q.,Xue, F.,Cinelli, M.,Silverman, R.B.,Poulos, T.L. Crystallographic and Computational Insights into Isoform-Selective Dynamics in Nitric Oxide Synthase. Biochemistry 2024 63 788 796 8UFS 38417024 Structure of human endothelial nitric oxide synthase E361Q mutant heme domain obtain after soaking crystal with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride 2023-10-04 2024-03-13 Li, H.,Hardy, C.D.,Reidl, C.T.,Jing, Q.,Xue, F.,Cinelli, M.,Silverman, R.B.,Poulos, T.L. Crystallographic and Computational Insights into Isoform-Selective Dynamics in Nitric Oxide Synthase. Biochemistry 2024 63 788 796 8VL9 Crystal structure of EloBC-VHL-CDO1 complex bound to compound 8 molecular glue 2024-01-11 2024-03-13 Tutter, A.,Buckley, D.,Golosov, A.,Ma, X.,Shu, W.,Michaud, G. A small molecule VHL molecular glue degrader for cysteine dioxygenase 1 To Be Published 0 0 0 0 8EEC Crystal structure of HPK1 citron-homology domain 2022-09-06 2024-03-27 Chitre, A.,Wu, P.,Walters, B.,Wang, X.,Du, X.,Lehoux, I.,Fong, R.,Arata, A.,Frnake, Y.,Grogan, J.L.,Mellman, I.,Camps-Agrar, L.,Wang, W. HPK1 Citron Homology Domain Serves as a Scaffold to Promote Phosphorylation of SLP76 To Be Published 0 0 0 0 8JOT 38172256 Crystal structure of CSF-1R kinase domain with sulfatinib 2023-06-08 2024-03-27 Lin, Q.,Dai, S.,Qu, L.,Lin, H.,Guo, M.,Wei, H.,Chen, Y.,Chen, X. Structural basis and selectivity of sulfatinib binding to FGFR and CSF-1R. Commun Chem 2024 7 3 3 8SLJ 37698360 K164A mutant of a chlorogenic acid esterase from Lactobacillus helveticus 2023-04-22 2024-03-27 Omori, K.K.,Drucker, C.T.,Okumura, T.L.S.,Carl, N.B.,Dinn, B.T.,Ly, D.,Sacapano, K.N.,Tajii, A.,Owens, C.P. The structure of a Lactobacillus helveticus chlorogenic acid esterase and the dynamics of its insertion domain provide insights into substrate binding. Febs Lett. 2023 597 2946 2962 8U5J Structure of Mango III variant aptamer bound to T01-07M-B 2023-09-12 2024-03-27 Passalacqua, L.F.M.,Ferre-D'Amare, A.R. Structure of Mango III variant aptamer bound to T01-07M-B To Be Published 0 0 0 0 8U5R Structure of Mango II variant aptamer bound to T01-6A 2023-09-12 2024-03-27 Passalacqua, L.F.M.,Ferre-D'Amare, A.R. Structure of Mango II variant aptamer bound to T01-6A To Be Published 0 0 0 0 8U5T Structure of Mango II variant aptamer bound to T01-6A-B 2023-09-12 2024-03-27 Passalacqua, L.F.M.,Ferre-D'Amare, A.R. Structure of Mango II variant aptamer bound to T01-6A-B To Be Published 0 0 0 0 8U5Z Structure of Mango II variant aptamer bound to T01-7M-B 2023-09-13 2024-03-27 Passalacqua, L.F.M.,Ferre-D'Amare, A.R. Structure of Mango II variant aptamer bound to T01-7M-B To Be Published 0 0 0 0 8V34 38416829 Crystal structure of S. aureus TarK N-terminal domain 2023-11-26 2024-04-03 Li, F.K.K.,Worrall, L.J.,Gale, R.T.,Brown, E.D.,Strynadka, N.C.J. Cryo-EM analysis of S. aureus TarL, a polymerase in wall teichoic acid biogenesis central to virulence and antibiotic resistance. Sci Adv 2024 10 0 0 8TEF PorX primitive monoclinic crystal form 2023-07-06 2024-04-17 Saran, A.,Zeytuni, N. PorX primitive monoclinic crystal form To Be Published 0 0 0 0 8TM2 38586421 Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys 2023-07-27 2024-04-17 Rupert, P.B.,Buerger, M.,Girard, E.J.,Frutoso, M.,Parrilla, D.,Ng, K.,Gooley, T.,Groh, V.,Strong, R.K. Preclinical characterization of Pan-NKG2D ligand-binding NKG2D receptor decoys. Heliyon 2024 10 0 0 8TR4 38577994 Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20404 2023-08-09 2024-04-24 Krieger, I.V.,Yalamanchili, S.,Dickson, P.,Engelhart, C.A.,Zimmerman, M.D.,Wood, J.,Clary, E.,Nguyen, J.,Thornton, N.,Centrella, P.A.,Chan, B.,Cuozzo, J.W.,Gengenbacher, M.,Guie, M.A.,Guilinger, J.P.,Bienstock, C.,Hartl, H.,Hupp, C.D.,Jetson, R.,Satoh, T.,Yeoman, J.T.S.,Zhang, Y.,Dartois, V.,Schnappinger, D.,Keefe, A.D.,Sacchettini, J.C. Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening. Acs Infect Dis. 2024 0 0 0