PDB_ID	PUBMED_CID	STRUCTURE TITLE	DEPOSITION DATE	RELEASE DATE	AUTHORS	CITATION TITLE	JOURNAL	YEAR	VOLUME	FIRST PAGE	LAST PAGE
7N2P	36477533	AS4.3-RNASEH2b-HLA*B27	2021-05-29	2022-12-07	Yang, X.,Garner, L.I.,Zvyagin, I.V.,Paley, M.A.,Komech, E.A.,Jude, K.M.,Zhao, X.,Fernandes, R.A.,Hassman, L.M.,Paley, G.L.,Savvides, C.S.,Brackenridge, S.,Quastel, M.N.,Chudakov, D.M.,Bowness, P.,Yokoyama, W.M.,McMichael, A.J.,Gillespie, G.M.,Garcia, K.C.	Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides.	Nature	2022	612	771	777	
8F93	37460812	WDR5 covalently modified at Y228 by (R)-2-SF	2022-11-23	2023-05-31	Chen, Y.,Craven, G.B.,Kamber, R.A.,Cuesta, A.,Zhersh, S.,Moroz, Y.S.,Bassik, M.C.,Taunton, J.	Direct mapping of ligandable tyrosines and lysines in cells with chiral sulfonyl fluoride probes.	Nat.Chem.	2023	15	1616	1625	
8SSN	37590418	Abl kinase in complex with SKI and asciminib	2023-05-08	2023-09-06	Kim, C.,Ludewig, H.,Hadzipasic, A.,Kutter, S.,Nguyen, V.,Kern, D.	A biophysical framework for double-drugging kinases.	Proc.Natl.Acad.Sci.USA	2023	120	0	0	
8G4Y	38056465	Structure of ZNRF3 ECD bound to peptide MK1-3.6.10	2023-02-10	2023-12-20	Kschonsak, Y.T.,Gao, X.,Miller, S.E.,Hwang, S.,Marei, H.,Wu, P.,Li, Y.,Ruiz, K.,Dorighi, K.,Holokai, L.,Perampalam, P.,Tsai, W.K.,Kee, Y.S.,Agard, N.J.,Harris, S.F.,Hannoush, R.N.,de Sousa E Melo, F.	Potent and selective binders of the E3 ubiquitin ligase ZNRF3 stimulate Wnt signaling and intestinal organoid growth.	Cell Chem Biol	2024	31	1176	0	
8FEQ	38293747	16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs	2022-12-06	2024-01-24	Ding, D.,Fang, Z.,Kim, S.C.,O'Flaherty, D.K.,Jia, X.,Stone, T.B.,Zhou, L.,Szostak, J.W.	Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.	J.Am.Chem.Soc.	2024	146	3861	3871	
8FER	38293747	16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs	2022-12-06	2024-01-24	Ding, D.,Fang, Z.,Kim, S.C.,O'Flaherty, D.K.,Jia, X.,Stone, T.B.,Zhou, L.,Szostak, J.W.	Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.	J.Am.Chem.Soc.	2024	146	3861	3871	
8TWO	38354245	AvrB bound with UDP and RIN4_T166-Rha	2023-08-21	2024-02-28	Peng, W.,Garcia, N.,Servage, K.A.,Kohler, J.J.,Ready, J.M.,Tomchick, D.R.,Fernandez, J.,Orth, K.	Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4.	Sci Adv	2024	10	0	0	
8TWS	38354245	AvrB bound with UDP-rhamnose and RIN4 C-NOI motif	2023-08-21	2024-02-28	Peng, W.,Garcia, N.,Servage, K.A.,Kohler, J.J.,Ready, J.M.,Tomchick, D.R.,Fernandez, J.,Orth, K.	Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4.	Sci Adv	2024	10	0	0	
8VAX	38579124	Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer	2023-12-11	2024-04-17	Fang, Z.,Pazienza, L.T.,Zhang, J.,Tam, C.P.,Szostak, J.W.	Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.	J.Am.Chem.Soc.	2024	146	10632	10639	
8V10	38776904	Structure of a Saccharomyces cerevisiae Mps1 peptide bound to dwarf Ndc80 Complex	2023-11-19	2024-05-15	Zahm, J.A.,Harrison, S.C.	A communication hub for phosphoregulation of kinetochore-microtubule attachment.	Curr.Biol.	2024	34	2308	0	
8V11	38776904	Structure of a Saccharomyces cerevisiae Ipl1 peptide Bound to dwarf Ndc80 complex	2023-11-19	2024-05-15	Zahm, J.A.,Harrison, S.C.	A communication hub for phosphoregulation of kinetochore-microtubule attachment.	Curr.Biol.	2024	34	2308	0	
8TDY	38818863	16mer self-complementary duplex RNA with D:U pair sequence 1	2023-07-05	2024-06-12	Jia, X.,Fang, Z.,Kim, S.C.,Ding, D.,Zhou, L.,Szostak, J.W.	Diaminopurine in Nonenzymatic RNA Template Copying.	J.Am.Chem.Soc.	2024	146	15897	15907	
8TDZ	38818863	16mer self-complementary duplex RNA with D:U pair sequence 2	2023-07-05	2024-06-12	Jia, X.,Fang, Z.,Kim, S.C.,Ding, D.,Zhou, L.,Szostak, J.W.	Diaminopurine in Nonenzymatic RNA Template Copying.	J.Am.Chem.Soc.	2024	146	15897	15907	
8TE0	38818863	16mer self-complementary duplex RNA with D:C pair sequence 1	2023-07-05	2024-06-12	Jia, X.,Fang, Z.,Kim, S.C.,Ding, D.,Zhou, L.,Szostak, J.W.	Diaminopurine in Nonenzymatic RNA Template Copying.	J.Am.Chem.Soc.	2024	146	15897	15907	
8TE2	38818863	16mer self-complementary duplex RNA with D:C pair sequence 2	2023-07-05	2024-06-12	Jia, X.,Fang, Z.,Kim, S.C.,Ding, D.,Zhou, L.,Szostak, J.W.	Diaminopurine in Nonenzymatic RNA Template Copying.	J.Am.Chem.Soc.	2024	146	15897	15907	
8UVY	39506119	Structure of AKT1(E17K) with compound 3	2023-11-05	2024-09-04	Craven, G.B.,Chu, H.,Sun, J.D.,Carelli, J.D.,Coyne, B.,Chen, H.,Chen, Y.,Ma, X.,Das, S.,Kong, W.,Zajdlik, A.D.,Yang, K.S.,Reisberg, S.H.,Thompson, P.A.,Lipford, J.R.,Taunton, J.	Mutant-selective AKT inhibition through lysine targeting and neo-zinc chelation.	Nature	2025	637	205	214	
8UW2	39506119	Structure of AKT1(E17K) with compound 3 (zinc-free)	2023-11-05	2024-09-04	Craven, G.B.,Chu, H.,Sun, J.D.,Carelli, J.D.,Coyne, B.,Chen, H.,Chen, Y.,Ma, X.,Das, S.,Kong, W.,Zajdlik, A.D.,Yang, K.S.,Reisberg, S.H.,Thompson, P.A.,Lipford, J.R.,Taunton, J.	Mutant-selective AKT inhibition through lysine targeting and neo-zinc chelation.	Nature	2025	637	205	214	
8UW9	39506119	Structure of AKT1(E17K) with compound 4	2023-11-06	2024-09-04	Craven, G.B.,Chu, H.,Sun, J.D.,Carelli, J.D.,Coyne, B.,Chen, H.,Chen, Y.,Ma, X.,Das, S.,Kong, W.,Zajdlik, A.D.,Yang, K.S.,Reisberg, S.H.,Thompson, P.A.,Lipford, J.R.,Taunton, J.	Mutant-selective AKT inhibition through lysine targeting and neo-zinc chelation.	Nature	2025	637	205	214	
9C7W	39332817	human OC43 Main Protease (1-303) in complex with potent inhibitor	2024-06-11	2024-10-16	Barkan, D.T.,Garland, K.,Zhang, L.,Eastman, R.T.,Hesse, M.,Knapp, M.,Ornelas, E.,Tang, J.,Cortopassi, W.A.,Wang, Y.,King, F.,Jia, W.,Nguyen, Z.,Frank, A.O.,Chan, R.,Fang, E.,Fuller, D.,Busby, S.,Carias, H.,Donahue, K.,Tandeske, L.,Diagana, T.T.,Jarrousse, N.,Moser, H.,Sarko, C.,Dovala, D.,Moquin, S.,Marx, V.M.	Identification of Potent, Broad-Spectrum Coronavirus Main Protease Inhibitors for Pandemic Preparedness.	J.Med.Chem.	2024	67	17454	17471	
9CJ2	39149408	Dual phosphorylated human p38 alpha	2024-07-05	2024-11-13	Stadnicki, E.J.,Ludewig, H.,Kumar, R.P.,Wang, X.,Qiao, Y.,Kern, D.,Bradshaw, N.	Dual-Action Kinase Inhibitors Influence p38 alpha MAP Kinase Dephosphorylation.	Biorxiv	2024	0	0	0	
9CJ3	39149408	Dual phosphorylated human p38 alpha bound to pexmetinib	2024-07-05	2024-11-13	Stadnicki, E.J.,Ludewig, H.,Kumar, R.P.,Wang, X.,Qiao, Y.,Kern, D.,Bradshaw, N.	Dual-Action Kinase Inhibitors Influence p38 alpha MAP Kinase Dephosphorylation.	Biorxiv	2024	0	0	0	
9C76		LRRK2 Roc domain RP (Ras-pocket) complexed to Divarasib	2024-06-10	2024-12-11	Zhu, L.Y.,Shokat, K.M.	LRRK2 Roc domain RP (Ras-pocket) complexed to Divarasib	To Be Published	0	0	0	0	
9CG2	39712206	DUF512 protein from Pyrococcus furiosus	2024-06-28	2025-03-05	Wang, B.,Solinski, A.E.,Radle, M.I.,Peduzzi, O.M.,Knox, H.L.,Cui, J.,Maurya, R.K.,Yennawar, N.H.,Booker, S.J.	Structural Evidence for DUF512 as a Radical S -Adenosylmethionine Cobalamin-Binding Domain.	Acs Bio Med Chem Au	2024	4	319	330	
9DMM	40391409	Crystal structure of human KRAS G12C covalently bound to Divarasib (GDC6036)	2024-09-13	2025-05-21	Fernando, M.C.,Craven, G.B.,Shokat, K.M.	The structure of KRAS G12C bound to divarasib highlights features of potent switch-II pocket engagement.	Small Gtpases	2024	15	1	7	
9OJ3	40531663	Crystal structure of the SpyTag003-SpyCatcher003 complex	2025-05-06	2025-06-25	Ralston, C.Y.,Gupta, S.,Del Mundo, J.T.,Soe, A.C.,Russell, B.,Rad, B.,Tyler, J.,Paul, S.,Kahan, D.N.,Kristensen, L.G.,Subramanian, S.,Kidd, S.,Burnett, K.,Sankaran, B.,Classen, S.,Prigozhin, D.M.,Taylor, J.R.,Dickert, J.M.,Royal, K.B.,Rozales, A.,Ortega, S.L.,Allaire, M.,Nix, J.C.,Hura, G.L.,Holton, J.M.,Hammel, M.,Adams, P.D.	ALS-ENABLE: creating synergy and opportunity at the Advanced Light Source synchrotron structural biology beamlines.	J.Synchrotron Radiat.	2025	32	1059	1067	
9DNQ	40880185	Structure of UBR2-RYF complex	2024-09-17	2025-08-13	Huang, S.T.,Chen, D.H.,Ren, T.,Thomas, N.,Wu, J.,Sankaran, B.,Jones, R.,Taylor, S.,Chen, Y.	An alternative pocket for binding the N-degrons by the UBR1 and UBR2 ubiquitin E3 ligases.	Protein Sci.	2025	34	0	0	
9PXZ	41429045	PRMT5 Bound to Compound 6 and MTA	2025-08-06	2026-01-07	Debien, L.,Armstrong, M.K.,Farr, J.D.,Ferrao, R.D.,Gupta, P.L.,Niu, C.,Anderson, A.J.,Benner, P.,Bristol, A.N.,Chin, E.,Chou, C.,Deng, Y.,Fu, X.,Gheiratmand, M.,Hull, S.M.,Hung, J.C.,June, B.,Kirschman, J.H.,Le, H.,Malik, B.,Mitchell, M.L.,Mukherjee, P.K.,Nguyen, S.V.,Notte, G.T.,Orf, J.,Roa, D.E.,Santos, R.,Schrier, A.J.,Spence, K.A.,Sura, R.,Yang, Z.Y.,Zane, D.,Zahabian, A.N.,Zavorotinskaya, T.	Discovery of Bis-Acyl Hydrazides as Potent and Bioavailable MTA-Cooperative PRMT5 Inhibitors: A Case Study of Leveraging the Deuterium Kinetic Isotope Effect.	J.Med.Chem.	2026	69	289	304	
9PY1	41429045	PRMT5 Bound to Compound 8 and MTA	2025-08-06	2026-01-07	Debien, L.,Armstrong, M.K.,Farr, J.D.,Ferrao, R.D.,Gupta, P.L.,Niu, C.,Anderson, A.J.,Benner, P.,Bristol, A.N.,Chin, E.,Chou, C.,Deng, Y.,Fu, X.,Gheiratmand, M.,Hull, S.M.,Hung, J.C.,June, B.,Kirschman, J.H.,Le, H.,Malik, B.,Mitchell, M.L.,Mukherjee, P.K.,Nguyen, S.V.,Notte, G.T.,Orf, J.,Roa, D.E.,Santos, R.,Schrier, A.J.,Spence, K.A.,Sura, R.,Yang, Z.Y.,Zane, D.,Zahabian, A.N.,Zavorotinskaya, T.	Discovery of Bis-Acyl Hydrazides as Potent and Bioavailable MTA-Cooperative PRMT5 Inhibitors: A Case Study of Leveraging the Deuterium Kinetic Isotope Effect.	J.Med.Chem.	2026	69	289	304	
9MW1	40529094	Structure of SARM1 TIR domain bound to G8758	2025-01-16	2026-02-04	Green, S.A.,Smith, R.T.,Grandner, J.M.,Zeng, M.,Del Bel, M.,Zhu, B.Y.,Liang, J.,Braun, M.G.,Sudhamsu, J.,Wallweber, H.A.,Boenig, G.,Murray, J.,Shen, X.,Zhang, R.,Lai, K.W.,Delwig, A.,Breboneria, M.A.,Ly, J.,Ganti, A.,Nespi, M.,Weber, M.,Leahey, R.,Hinz, F.I.,Chan, B.K.	Optimization of Brain Penetrant SARM1 Orthosteric Inhibitors and Discovery of Their Paradoxical Subinhibitory Activation.	Acs Med.Chem.Lett.	2025	16	1147	1154	
9NKQ	41678610	Coevolved affibody pair A6B6	2025-03-01	2026-02-04	Yang, A.,Jiang, H.,Jude, K.M.,Akpinaroglu, D.,Allenspach, S.,Li, A.J.,Bowden, J.,Perez, C.P.,Liu, L.,Huang, P.S.,Kortemme, T.,Listgarten, J.,Garcia, K.C.	Structural ontogeny of protein-protein interactions.	Science	2026	391	0	0	
9NMV	41855322	TCR156 S32Halpha bound to HLA A*02:01-PAP	2025-03-04	2026-03-18	Chen, X.,Mao, Z.,Kolawole, E.M.,Persechino, M.,Jude, K.M.,Ogishi, M.,Mo, K.C.,McLaughlin, J.,Cheng, D.,Xiang, X.,Yang, X.,Gee, C.,Liu, S.,Yang, A.,Obenaus, M.,Wang, N.,Noguchi, M.,Stoyanova, T.,Lee, J.K.,Good, Z.,Latorraca, N.R.,Evavold, B.D.,Witte, O.N.,Garcia, K.C.	Overcoming T cell tolerance to tumor self-antigens through catch-bond engineering.	Science	2026	391	0	0	
9DSG		Crystal structure of the SARS-CoV-2 RBD in complex with the cow antibody P2	2024-09-27	2026-04-08	Fan, C.,Bjorkman, P.J.	Crystal structure of the SARS-CoV-2 RBD in complex with the cow antibody P2	To Be Published	0	0	0	0	
9DSK		Crystal structure of the cow antibody 115	2024-09-27	2026-04-08	Fan, C.,Bjorkman, P.J.	Crystal structure of the cow antibody 115	To Be Published	0	0	0	0	
9ZDU	42258728	Crystal structure of SARS-CoV-2 RBD in complex with human Ab401 Fab	2025-11-26	2026-04-22	Skelly, A.N.,Fan, C.,Keeffe, J.R.,Okten, A.B.,Gavor, E.,Newby, M.L.,Allen, J.D.,Kreider, E.F.,Ding, W.,Osbaldeston, R.A.,Park, Y.,Connell, A.J.,Lituchy, M.G.,Bibollet-Ruche, F.,Radford, K.M.,P West Jr., A.,Pena-Hernandez, M.A.,Cruickshank, K.,Liu, W.,Li, Y.,Albertus, A.,McWilliams, B.,Russell, R.M.,Konrath, K.M.,Torres, J.L.,Yuan, M.,Gao, H.,Montefiori, D.C.,Saag, M.S.,Goepfert, P.A.,Kulp, D.W.,Ward, A.B.,Wilson, I.A.,Shaw, G.M.,Andrabi, R.,Crispin, M.,Weissman, D.,Wilen, C.B.,Bjorkman, P.J.,Hahn, B.H.	mRNA delivery of a class 1/4 SARS-CoV-2 neutralizing antibody protects against diverse sarbecoviruses in a lethal mouse challenge model.	Proc.Natl.Acad.Sci.USA	2026	123	0	0	
9Y5H	42146438	Crystal structure of rv-SNARE/sc-t-SNARE-diff-#3.3 complex	2025-09-04	2026-05-13	Somiya, M.,Funk, S.,Zambrano, D.,Yanase, T.,Hamaoka, N.,Kang, A.,Sankaran, B.,Bera, A.K.,King, N.P.	Computational design of membrane fusion proteins.	Biorxiv	2026	0	0	0	
9YAK	41615758	Structure of the GCN2 pseudokinase domain	2025-09-16	2026-07-01	Liu, Y.,Misra, J.,Bhowmik, D.R.,O'Boyle, B.,Staschke, K.A.,Kannan, N.,Wek, R.C.,Jura, N.	Structural basis for pseudokinase-mediated regulation of GCN2 in the integrated stress response.	Proc.Natl.Acad.Sci.USA	2026	123	0	0	
10KU	42264133	Structure of hNSP4-S218A bound to MCP3 at 2.09 A resolution	2026-01-25	2026-07-08	Tang, W.,Ultsch, M.,Adaligil, E.,Tombling, B.,Fleming, S.,Wei, Y.,Martinez, O.E.,Song, A.,Di Lello, P.,Sudhamsu, J.,Cunningham, C.N.,Kirchhofer, D.	Novel Macrocyclic Peptides as Potent and Selective Inhibitors of Human Neutrophil Serine Protease 4.	J.Mol.Biol.	2026	438	169894	169894	
9ZM5		Crystal structure of the Arabidopsis NPR1-NIMIN1 complex	2025-12-09	2026-07-29	Zhang, S.,Gish, M.L.,Zheng, N.	Crystal structure of the Arabidopsis NPR1-NIMIN1 complex	To Be Published	0	0	0	0