PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1T6Q 15209499 Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure 2004-05-07 2004-07-13 Barondeau, D.P.,Kassmann, C.J.,Bruns, C.K.,Tainer, J.A.,Getzoff, E.D. Nickel superoxide dismutase structure and mechanism. Biochemistry 2004 43 8038 8047 1ZS8 16089503 Crystal Structure of the Murine MHC Class Ib Molecule M10.5 2005-07-22 2005-07-26 Olson, R.,Huey-Tubman, K.E.,Dulac, C.,Bjorkman, P.J. Structure of a pheromone receptor-associated MHC molecule with an open and empty groove. Plos Biol. 2005 3 0 0 2BBD 16357204 Crystal Structure of the STIV MCP 2005-10-17 2005-12-06 Khayat, R.,Tang, L.,Larson, E.T.,Lawrence, C.M.,Young, M.,Johnson, J.E. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc.Natl.Acad.Sci.Usa 2005 102 18944 18949 2FZL 16600867 Structure of C-terminal domain of Archaeoglobus fulgidus XPB 2006-02-09 2006-04-18 Fan, L.,Arvai, A.S.,Cooper, P.K.,Iwai, S.,Hanaoka, F.,Tainer, J.A. Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair Mol.Cell 2006 22 27 37 2G4C 16574152 Crystal Structure of human DNA polymerase gamma accessory subunit 2006-02-22 2006-04-18 Fan, L.,Kim, S.,Farr, C.L.,Schaefer, K.T.,Randolph, K.M.,Tainer, J.A.,Kaguni, L.S. A novel processive mechanism for DNA synthesis revealed by structure, modeling and mutagenesis of the accessory subunit of human mitochondrial DNA polymerase J.Mol.Biol. 2006 358 1229 1243 2G1T 16640460 A Src-like Inactive Conformation in the Abl Tyrosine Kinase Domain 2006-02-14 2006-05-23 Levinson, N.M.,Kuchment, O.,Shen, K.,Young, M.A.,Koldobskiy, M.,Karplus, M.,Cole, P.A.,Kuriyan, J. A SRC-like inactive conformation in the abl tyrosine kinase domain. Plos Biol. 2006 4 753 767 2I0Q 17082188 Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins 2006-08-11 2006-08-22 Buczek, P.,Horvath, M.P. Structural reorganization and the cooperative binding of single-stranded telomere DNA in Sterkiella nova. J.Biol.Chem. 2006 281 40124 40134 2HNH 16959568 Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III 2006-07-12 2006-09-19 Lamers, M.H.,Georgescu, R.E.,Lee, S.G.,O'donnell, M.,Kuriyan, J. Crystal Structure of the Catalytic alpha Subunit of E. coli Replicative DNA Polymerase III. Cell(Cambridge,Mass.) 2006 126 881 892 2HII 17052461 heterotrimeric PCNA sliding clamp 2006-06-29 2006-11-07 Pascal, J.M.,Tsodikov, O.V.,Hura, G.L.,Song, W.,Cotner, E.A.,Classen, S.,Tomkinson, A.E.,Tainer, J.A.,Ellenberger, T. A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell 2006 24 279 291 2HIK 17052461 heterotrimeric PCNA sliding clamp 2006-06-29 2006-11-07 Pascal, J.M.,Tsodikov, O.V.,Hura, G.L.,Song, W.,Cotner, E.A.,Classen, S.,Tomkinson, A.E.,Tainer, J.A.,Ellenberger, T. A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell 2006 24 279 291 2HIV 17052461 ATP-dependent DNA ligase from S. solfataricus 2006-06-29 2006-11-07 Pascal, J.M.,Tsodikov, O.V.,Hura, G.L.,Song, W.,Cotner, E.A.,Classen, S.,Tomkinson, A.E.,Tainer, J.A.,Ellenberger, T. A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell 2006 24 279 291 2HIX 17052461 ATP dependent DNA ligase from S. solfataricus bound to ATP 2006-06-29 2006-11-07 Pascal, J.M.,Tsodikov, O.V.,Hura, G.L.,Song, W.,Cotner, E.A.,Classen, S.,Tomkinson, A.E.,Tainer, J.A.,Ellenberger, T. A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell 2006 24 279 291 2I39 17123957 Crystal structure of Vaccinia virus N1L protein 2006-08-17 2006-11-21 Aoyagi, M.,Zhai, D.,Jin, C.,Aleshin, A.E.,Stec, B.,Reed, J.C.,Liddington, R.C. Vaccinia virus N1L protein resembles a B cell lymphoma-2 (Bcl-2) family protein. Protein Sci. 2007 16 118 124 2O9J 17259168 Crystal structure of calcium atpase with bound magnesium fluoride and cyclopiazonic acid 2006-12-13 2007-02-06 Moncoq, K.,Trieber, C.A.,Young, H.S. The molecular basis for cyclopiazonic Acid inhibition of the sarcoplasmic reticulum calcium pump. J.Biol.Chem. 2007 282 9748 9757 2GGV 17400917 Crystal structure of the West Nile virus NS2B-NS3 protease, His51Ala mutant 2006-03-24 2007-03-27 Aleshin, A.E.,Shiryaev, S.A.,Strongin, A.Y.,Liddington, R.C. Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold. Protein Sci. 2007 16 795 806 2O3O 17307848 Crystal Structure of the sensor histidine kinase regulator YycI from Bacillus subtitlis 2006-12-01 2007-04-10 Santelli, E.,Liddington, R.C.,Mohan, M.A.,Hoch, J.A.,Szurmant, H. The Crystal Structure of Bacillus subtilis YycI Reveals a Common Fold for Two Members of an Unusual Class of Sensor Histidine Kinase Regulatory Proteins. J.Bacteriol. 2007 189 3290 3295 2IJO 17400917 Crystal Structure of the West Nile virus NS2B-NS3 protease complexed with bovine pancreatic trypsin inhibitor 2006-09-29 2007-05-15 Aleshin, A.E.,Shiryaev, S.A.,Strongin, A.Y.,Liddington, R.C. Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold. Protein Sci. 2007 16 795 806 2Z3C 17599357 A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase 2007-06-04 2007-07-03 Yin, J.,Niu, C.,Cherney, M.M.,Zhang, J.,Huitema, C.,Eltis, L.D.,Vederas, J.C.,James, M.N. A mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the SARS-CoV 3C-like peptidase J.Mol.Biol. 2007 371 1060 1074 2Z3D 17599357 A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase 2007-06-04 2007-07-03 Yin, J.,Niu, C.,Cherney, M.M.,Zhang, J.,Huitema, C.,Eltis, L.D.,Vederas, J.C.,James, M.N. A mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the SARS-CoV 3C-like peptidase J.Mol.Biol. 2007 371 1060 1074 2Z3E 17599357 A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase 2007-06-04 2007-07-03 Yin, J.,Niu, C.,Cherney, M.M.,Zhang, J.,Huitema, C.,Eltis, L.D.,Vederas, J.C.,James, M.N. A mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the SARS-CoV 3C-like peptidase J.Mol.Biol. 2007 371 1060 1074 2RFD 18046415 Crystal structure of the complex between the EGFR kinase domain and a Mig6 peptide 2007-09-28 2007-12-04 Zhang, X.,Pickin, K.A.,Bose, R.,Jura, N.,Cole, P.A.,Kuriyan, J. Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface. Nature 2007 450 741 744 2RFE 18046415 Crystal structure of the complex between the EGFR kinase domain and a Mig6 peptide 2007-09-28 2007-12-04 Zhang, X.,Pickin, K.A.,Bose, R.,Jura, N.,Cole, P.A.,Kuriyan, J. Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface. Nature 2007 450 741 744 3B31 18157151 Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA 2007-10-19 2007-12-25 Costantino, D.A.,Pfingsten, J.S.,Rambo, R.P.,Kieft, J.S. tRNA-mRNA mimicry drives translation initiation from a viral IRES. Nat.Struct.Mol.Biol. 2008 15 57 64 3CRW 18510924 XPD_APO 2008-04-07 2008-06-10 Fan, L.,Fuss, J.O.,Cheng, Q.J.,Arvai, A.S.,Hammel, M.,Roberts, V.A.,Cooper, P.K.,Tainer, J.A. XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell(Cambridge,Mass.) 2008 133 789 800 3DSD 18854158 Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese 2008-07-11 2008-10-14 Williams, R.S.,Moncalian, G.,Williams, J.S.,Yamada, Y.,Limbo, O.,Shin, D.S.,Groocock, L.M.,Cahill, D.,Hitomi, C.,Guenther, G.,Moiani, D.,Carney, J.P.,Russell, P.,Tainer, J.A. Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell(Cambridge,Mass.) 2008 135 97 109 2W36 19136958 Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair 2008-11-06 2009-01-20 Dalhus, B.,Arvai, A.S.,Rosnes, I.,Olsen, O.E.,Backe, P.H.,Alseth, I.,Gao, H.,Cao, W.,Tainer, J.A.,Bjoras, M. Structures of Endonuclease V with DNA Reveal Initiation of Deaminated Adenine Repair. Nat.Struct.Mol.Biol. 2009 16 138 0 3F7K 19063897 X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex 2008-11-09 2009-02-10 Shin, D.S.,Didonato, M.,Barondeau, D.P.,Hura, G.L.,Hitomi, C.,Berglund, J.A.,Getzoff, E.D.,Cary, S.C.,Tainer, J.A. Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. 2009 385 1534 1555 3F7L 19063897 X-ray Crystal Structure of Alvinella pompejana Cu,Zn Superoxide Dismutase 2008-11-09 2009-02-10 Shin, D.S.,Didonato, M.,Barondeau, D.P.,Hura, G.L.,Hitomi, C.,Berglund, J.A.,Getzoff, E.D.,Cary, S.C.,Tainer, J.A. Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. 2009 385 1534 1555 3FPB 19289472 The Structure of Sarcoplasmic Reticulum Ca2+-ATPase Bound To Cyclopiazonic acid with ATP 2009-01-05 2009-04-07 Laursen, M.,Bublitz, M.,Moncoq, K.,Olesen, C.,Moller, J.V.,Young, H.S.,Nissen, P.,Morth, J.P. Cyclopiazonic acid is complexed to a divalent metal ion when bound to the sarcoplasmic reticulum Ca2+-ATPase. J.Biol.Chem. 2009 284 13513 13518 3FPB 19289472 The Structure of Sarcoplasmic Reticulum Ca2+-ATPase Bound To Cyclopiazonic acid with ATP 2009-01-05 2009-04-07 Laursen, M.,Bublitz, M.,Moncoq, K.,Olesen, C.,Moller, J.V.,Young, H.S.,Nissen, P.,Morth, J.P. Cyclopiazonic acid is complexed to a divalent metal ion when bound to the sarcoplasmic reticulum Ca2+-ATPase. J.Biol.Chem. 2009 284 13513 13518 2WAP 19389627 3D-crystal structure of humanized-rat fatty acid amide hydrolase (FAAH) conjugated with the drug-like urea inhibitor PF-3845 2009-02-11 2009-05-05 Ahn, K.,Johnson, D.S.,Mileni, M.,Beidler, D.,Long, J.Z.,Mckinney, M.K.,Weerapana, E.,Sadagopan, N.,Liimatta, M.,Smith, S.E.,Lazerwith, S.,Stiff, C.,Kamtekar, S.,Bhattacharya, K.,Zhang, Y.,Swaney, S.,Vanbecelaere, K.,Stevens, R.C.,Cravatt, B.F. Discovery and Characterization of a Highly Selective Faah Inhibitor that Reduces Inflammatory Pain. Chem.Biol. 2009 16 411 0 3GVA 19516334 Crystal Structure Analysis of S. Pombe ATL 2009-03-30 2009-06-09 Tubbs, J.L.,Latypov, V.,Kanugula, S.,Butt, A.,Melikishvili, M.,Kraehenbuehl, R.,Fleck, O.,Marriott, A.,Watson, A.J.,Verbeek, B.,McGown, G.,Thorncroft, M.,Santibanez-Koref, M.F.,Millington, C.,Arvai, A.S.,Kroeger, M.D.,Peterson, L.A.,Williams, D.M.,Fried, M.G.,Margison, G.P.,Pegg, A.E.,Tainer, J.A. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 459 808 813 3EW0 19574633 The novel 2Fe-2S outer mitochondrial protein mitoNEET displays conformational flexibility in its N-terminal cytoplasmic tethering domain 2008-10-13 2009-07-07 Conlan, A.R.,Paddock, M.L.,Axelrod, H.L.,Cohen, A.E.,Abresch, E.C.,Wiley, S.,Roy, M.,Nechushtai, R.,Jennings, P.A. The novel 2Fe-2S outer mitochondrial protein mitoNEET displays conformational flexibility in its N-terminal cytoplasmic tethering domain. Acta Crystallogr.,Sect.F 2009 65 654 659 3HUE 19804755 Structure of the S. pombe Nbs1 FHA-BRCT1-BRCT2 domains 2009-06-13 2009-10-13 Williams, R.S.,Dodson, G.E.,Limbo, O.,Yamada, Y.,Williams, J.S.,Guenther, G.,Classen, S.,Glover, J.N.,Iwasaki, H.,Russell, P.,Tainer, J.A. Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.) 2009 139 87 99 3HUF 19804755 Structure of the S. pombe Nbs1-Ctp1 complex 2009-06-13 2009-10-13 Williams, R.S.,Dodson, G.E.,Limbo, O.,Yamada, Y.,Williams, J.S.,Guenther, G.,Classen, S.,Glover, J.N.,Iwasaki, H.,Russell, P.,Tainer, J.A. Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.) 2009 139 87 99 3K3K 19933100 Crystal structure of dimeric abscisic acid (ABA) receptor pyrabactin resistance 1 (PYR1) with ABA-bound closed-lid and ABA-free open-lid subunits 2009-10-02 2009-11-17 Nishimura, N.,Hitomi, K.,Arvai, A.S.,Rambo, R.P.,Hitomi, C.,Cutler, S.R.,Schroeder, J.I.,Getzoff, E.D. Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science 2009 326 1373 1379 3K0N 19956261 Room temperature structure of CypA 2009-09-24 2009-12-08 Fraser, J.S.,Clarkson, M.W.,Degnan, S.C.,Erion, R.,Kern, D.,Alber, T. Hidden alternative structures of proline isomerase essential for catalysis. Nature 2009 462 669 673 3K0O 19956261 Room temperature structure of CypA mutant Ser99Thr 2009-09-24 2009-12-08 Fraser, J.S.,Clarkson, M.W.,Degnan, S.C.,Erion, R.,Kern, D.,Alber, T. Hidden alternative structures of proline isomerase essential for catalysis. Nature 2009 462 669 673 3L40 20094029 Crystal Structure of S. pombe Brc1 BRCT5-BRCT6 domains 2009-12-18 2010-02-09 Williams, J.S.,Williams, R.S.,Dovey, C.L.,Guenther, G.,Tainer, J.A.,Russell, P. gammaH2A binds Brc1 to maintain genome integrity during S-phase. Embo J. 2010 29 1136 1148 3L41 20094029 Crystal Structure of S. pombe Brc1 BRCT5-BRCT6 domains in complex with phosphorylated H2A 2009-12-18 2010-02-09 Williams, J.S.,Williams, R.S.,Dovey, C.L.,Guenther, G.,Tainer, J.A.,Russell, P. gammaH2A binds Brc1 to maintain genome integrity during S-phase. Embo J. 2010 29 1136 1148 3ODE 21233213 Human PARP-1 zinc finger 2 (Zn2) bound to DNA 2010-08-11 2011-01-12 Langelier, M.F.,Planck, J.L.,Roy, S.,Pascal, J.M. Crystal Structures of Poly(ADP-ribose) Polymerase-1 (PARP-1) Zinc Fingers Bound to DNA: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY. J.Biol.Chem. 2011 286 10690 10701 3QI5 21349833 Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA 2011-01-26 2011-03-09 Lingaraju, G.M.,Davis, C.A.,Setser, J.W.,Samson, L.D.,Drennan, C.L. Structural Basis for the Inhibition of Human Alkyladenine DNA Glycosylase (AAG) by 3,N4-Ethenocytosine-containing DNA. J.Biol.Chem. 2011 286 13205 13213 3QKT 21441914 Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP 2011-02-01 2011-03-30 Williams, G.J.,Williams, R.S.,Williams, J.S.,Moncalian, G.,Arvai, A.S.,Limbo, O.,Guenther, G.,Sildas, S.,Hammel, M.,Russell, P.,Tainer, J.A. ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair. Nat.Struct.Mol.Biol. 2011 18 423 431 3QKU 21441914 Mre11 Rad50 binding domain in complex with Rad50 and AMP-PNP 2011-02-01 2011-03-30 Williams, G.J.,Williams, R.S.,Williams, J.S.,Moncalian, G.,Arvai, A.S.,Limbo, O.,Guenther, G.,Sildas, S.,Hammel, M.,Russell, P.,Tainer, J.A. ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair. Nat.Struct.Mol.Biol. 2011 18 423 431 3QIX 21434688 Crystal Structure of BoNT/A LC with Zinc bound 2011-01-28 2011-04-13 Thompson, A.A.,Jiao, G.S.,Kim, S.,Thai, A.,Cregar-Hernandez, L.,Margosiak, S.A.,Johnson, A.T.,Han, G.W.,O'Malley, S.,Stevens, R.C. Structural Characterization of Three Novel Hydroxamate-Based Zinc Chelating Inhibitors of the Clostridium botulinum Serotype A Neurotoxin Light Chain Metalloprotease Reveals a Compact Binding Site Resulting from 60/70 Loop Flexibility. Biochemistry 2011 50 4019 4028 3PXC 21473589 Impact of BRCA1 BRCT domain missense substitutions on phospho-peptide recognition: R1699Q 2010-12-09 2011-04-20 Coquelle, N.,Green, R.,Glover, J.N. Impact of BRCA1 BRCT Domain Missense Substitutions on Phosphopeptide Recognition. Biochemistry 2011 50 4579 4589 3Q8K 21496641 Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with product 5'-flap DNA, SM3+, and K+ 2011-01-06 2011-04-27 Tsutakawa, S.E.,Classen, S.,Chapados, B.R.,Arvai, A.S.,Finger, L.D.,Guenther, G.,Tomlinson, C.G.,Thompson, P.,Sarker, A.H.,Shen, B.,Cooper, P.K.,Grasby, J.A.,Tainer, J.A. Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.) 2011 145 198 211 3Q8L 21496641 Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with substrate 5'-flap DNA, SM3+, and K+ 2011-01-06 2011-04-27 Tsutakawa, S.E.,Classen, S.,Chapados, B.R.,Arvai, A.S.,Finger, L.D.,Guenther, G.,Tomlinson, C.G.,Thompson, P.,Sarker, A.H.,Shen, B.,Cooper, P.K.,Grasby, J.A.,Tainer, J.A. Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.) 2011 145 198 211 3Q8M 21496641 Crystal Structure of Human Flap Endonuclease FEN1 (D181A) in complex with substrate 5'-flap DNA and K+ 2011-01-06 2011-04-27 Tsutakawa, S.E.,Classen, S.,Chapados, B.R.,Arvai, A.S.,Finger, L.D.,Guenther, G.,Tomlinson, C.G.,Thompson, P.,Sarker, A.H.,Shen, B.,Cooper, P.K.,Grasby, J.A.,Tainer, J.A. Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.) 2011 145 198 211 3RCZ 21444718 Rad60 SLD2 Ubc9 Complex 2011-03-31 2011-04-27 Prudden, J.,Perry, J.J.,Nie, M.,Vashisht, A.A.,Arvai, A.S.,Hitomi, C.,Guenther, G.,Wohlschlegel, J.A.,Tainer, J.A.,Boddy, M.N. DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes. Mol.Cell.Biol. 2011 31 2299 2310 3RD2 21444718 NIP45 SUMO-like Domain 2 2011-03-31 2011-04-27 Prudden, J.,Perry, J.J.,Nie, M.,Vashisht, A.A.,Arvai, A.S.,Hitomi, C.,Guenther, G.,Wohlschlegel, J.A.,Tainer, J.A.,Boddy, M.N. DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes. Mol.Cell.Biol. 2011 31 2299 2310 3ON0 21565799 Crystal structure of the pED208 TraM-sbmA complex 2010-08-27 2011-05-25 Wong, J.J.,Lu, J.,Edwards, R.A.,Frost, L.S.,Glover, J.N. Structural basis of cooperative DNA recognition by the plasmid conjugation factor, TraM. Nucleic Acids Res. 2011 39 6775 6788 3QRR 21572444 Structure of Thermus Thermophilus Cse3 bound to an RNA representing a product complex 2011-02-18 2011-05-25 Gesner, E.M.,Schellenberg, M.J.,Garside, E.L.,George, M.M.,Macmillan, A.M. Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat.Struct.Mol.Biol. 2011 18 688 692 3SR2 21775435 Crystal Structure of Human XLF-XRCC4 Complex 2011-07-06 2011-07-20 Hammel, M.,Rey, M.,Yu, Y.,Mani, R.S.,Classen, S.,Liu, M.,Pique, M.E.,Fang, S.,Mahaney, B.L.,Weinfeld, M.,Schriemer, D.C.,Lees-Miller, S.P.,Tainer, J.A. XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair. J.Biol.Chem. 2011 286 32638 32650 3Q75 21816822 Cryptococcus neoformans protein farnesyltransferase in complex with FPT-II and TKCVVM peptide 2011-01-04 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. 2011 286 35149 35162 3Q79 21816822 Cryptococcus neoformans protein farnesyltransferase in complex with farnesyl-DDPTASACNIQ product 2011-01-04 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. 2011 286 35149 35162 3SFX 21816822 Cryptococcus neoformans protein farnesyltransferase in complex with FPT-II and tipifarnib 2011-06-14 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. 2011 286 35149 35162 3SFY 21816822 Cryptococcus neoformans protein farnesyltransferase in complex with FPT-II and ethylenediamine inhibitor 2 2011-06-14 2011-08-03 Hast, M.A.,Nichols, C.B.,Armstrong, S.M.,Kelly, S.M.,Hellinga, H.W.,Alspaugh, J.A.,Beese, L.S. Structures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens. J.Biol.Chem. 2011 286 35149 35162 3RDR 21816821 Structure of the catalytic domain of XlyA 2011-04-01 2011-08-10 Low, L.Y.,Yang, C.,Perego, M.,Osterman, A.,Liddington, R. Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins. J.Biol.Chem. 2011 286 34391 34403 3RDR 21816821 Structure of the catalytic domain of XlyA 2011-04-01 2011-08-10 Low, L.Y.,Yang, C.,Perego, M.,Osterman, A.,Liddington, R. Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins. J.Biol.Chem. 2011 286 34391 34403 3PX4 22006298 Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddCTP-dA Mismatch (wobble) in Ajar Conformation 2010-12-09 2011-10-19 Wang, W.,Hellinga, H.W.,Beese, L.S. Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA 2011 108 17644 17648 3PX6 22006298 Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddCTP-dA Mismatch (tautomer) in Closed Conformation 2010-12-09 2011-10-19 Wang, W.,Hellinga, H.W.,Beese, L.S. Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA 2011 108 17644 17648 3TAN 22006298 Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-1) Position 2011-08-04 2011-10-19 Wang, W.,Hellinga, H.W.,Beese, L.S. Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA 2011 108 17644 17648 3TDN 21978247 Computationally designed two-fold symmetric Tim-barrel protein, FLR 2011-08-11 2011-11-16 Fortenberry, C.,Bowman, E.A.,Proffitt, W.,Dorr, B.,Combs, S.,Harp, J.,Mizoue, L.,Meiler, J. Exploring symmetry as an avenue to the computational design of large protein domains. J.Am.Chem.Soc. 2011 133 18026 18029 3U7G 22171004 Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTAp) 2011-10-13 2011-12-14 Coquelle, N.,Havali-Shahriari, Z.,Bernstein, N.,Green, R.,Glover, J.N. Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates. Proc.Natl.Acad.Sci.USA 2011 108 21022 21027 3UBY 22148158 Crystal structure of human alklyadenine DNA glycosylase in a lower and higher-affinity complex with DNA 2011-10-25 2011-12-28 Setser, J.W.,Lingaraju, G.M.,Davis, C.A.,Samson, L.D.,Drennan, C.L. Searching for DNA lesions: structural evidence for lower- and higher-affinity DNA binding conformations of human alkyladenine DNA glycosylase. Biochemistry 2012 51 382 390 4EEP 22573334 Crystal structure of LOV2 domain of Arabidopsis thaliana phototropin 2 2012-03-28 2012-05-16 Christie, J.M.,Hitomi, K.,Arvai, A.S.,Hartfield, K.A.,Mettlen, M.,Pratt, A.J.,Tainer, J.A.,Getzoff, E.D. Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability. J.Biol.Chem. 2012 287 22295 22304 4EES 22573334 Crystal structure of iLOV 2012-03-28 2012-05-16 Christie, J.M.,Hitomi, K.,Arvai, A.S.,Hartfield, K.A.,Mettlen, M.,Pratt, A.J.,Tainer, J.A.,Getzoff, E.D. Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability. J.Biol.Chem. 2012 287 22295 22304 4EET 22573334 Crystal structure of iLOV 2012-03-28 2012-05-16 Christie, J.M.,Hitomi, K.,Arvai, A.S.,Hartfield, K.A.,Mettlen, M.,Pratt, A.J.,Tainer, J.A.,Getzoff, E.D. Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability. J.Biol.Chem. 2012 287 22295 22304 4EEU 22573334 Crystal structure of phiLOV2.1 2012-03-28 2012-05-16 Christie, J.M.,Hitomi, K.,Arvai, A.S.,Hartfield, K.A.,Mettlen, M.,Pratt, A.J.,Tainer, J.A.,Getzoff, E.D. Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability. J.Biol.Chem. 2012 287 22295 22304 3UEK 22609859 Crystal structure of the catalytic domain of rat poly (ADP-ribose) glycohydrolase 2011-10-30 2012-05-23 Kim, I.K.,Kiefer, J.R.,Ho, C.M.,Stegeman, R.A.,Classen, S.,Tainer, J.A.,Ellenberger, T. Structure of mammalian poly(ADP-ribose) glycohydrolase reveals a flexible tyrosine clasp as a substrate-binding element. Nat.Struct.Mol.Biol. 2012 19 653 656 3UEL 22609859 Crystal structure of the catalytic domain of rat poly (ADP-ribose) glycohydrolase bound to ADP-HPD 2011-10-30 2012-05-23 Kim, I.K.,Kiefer, J.R.,Ho, C.M.,Stegeman, R.A.,Classen, S.,Tainer, J.A.,Ellenberger, T. Structure of mammalian poly(ADP-ribose) glycohydrolase reveals a flexible tyrosine clasp as a substrate-binding element. Nat.Struct.Mol.Biol. 2012 19 653 656 4DQQ 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mg2+ 2012-02-16 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DQR 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+ 2012-02-16 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DQS 22648417 Binary complex of Bacillus DNA Polymerase I Large Fragment and duplex DNA with rC in primer terminus paired with dG of template 2012-02-16 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DS4 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mn2+ 2012-02-17 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DS5 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mg2+ 2012-02-17 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DSE 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment F710Y, DNA duplex, and rCTP (paired with dG of template) in presence of Mg2+ 2012-02-18 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4DSF 22648417 Ternary complex of Bacillus DNA Polymerase I Large Fragment F710Y, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+ 2012-02-18 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4E0D 22648417 Binary complex of Bacillus DNA Polymerase I Large Fragment E658A and duplex DNA 2012-03-02 2012-06-06 Wang, W.,Wu, E.Y.,Hellinga, H.W.,Beese, L.S. Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. 2012 287 28215 28226 4ENJ 22658721 Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-hydroxyethylguanine 2012-04-13 2012-06-20 Latypov, V.F.,Tubbs, J.L.,Watson, A.J.,Marriott, A.S.,McGown, G.,Thorncroft, M.,Wilkinson, O.J.,Senthong, P.,Butt, A.,Arvai, A.S.,Millington, C.L.,Povey, A.C.,Williams, D.M.,Santibanez-Koref, M.F.,Tainer, J.A.,Margison, G.P. Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell 2012 47 50 60 4ENK 22658721 Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-propylguanine 2012-04-13 2012-06-20 Latypov, V.F.,Tubbs, J.L.,Watson, A.J.,Marriott, A.S.,McGown, G.,Thorncroft, M.,Wilkinson, O.J.,Senthong, P.,Butt, A.,Arvai, A.S.,Millington, C.L.,Povey, A.C.,Williams, D.M.,Santibanez-Koref, M.F.,Tainer, J.A.,Margison, G.P. Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell 2012 47 50 60 4ENN 22658721 Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-carboxymethylguanine 2012-04-13 2012-06-20 Latypov, V.F.,Tubbs, J.L.,Watson, A.J.,Marriott, A.S.,McGown, G.,Thorncroft, M.,Wilkinson, O.J.,Senthong, P.,Butt, A.,Arvai, A.S.,Millington, C.L.,Povey, A.C.,Williams, D.M.,Santibanez-Koref, M.F.,Tainer, J.A.,Margison, G.P. Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell 2012 47 50 60 3U35 22751670 Crystal structure of the general stress FMN/FAD binding protein from the phytopathogen Xanthomonas citri 2011-10-04 2012-06-27 Hilario, E.,Li, Y.,Niks, D.,Fan, L. The structure of a Xanthomonas general stress protein involved in citrus canker reveals its flavin-binding property. Acta Crystallogr.,Sect.D 2012 68 846 853 3SSY Engineered low-affinity halide-binding protein derived from YFP: iodide complex 2011-07-08 2012-07-11 Wang, W.,Grimley, J.S.,Augustine, G.J.,Beese, L.S.,Hellinga, H.W. Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition To be Published 0 0 0 0 3ST0 24107961 Engineered medium-affinity halide-binding protein derived from YFP: halide-free 2011-07-08 2012-07-11 Grimley, J.S.,Li, L.,Wang, W.,Wen, L.,Beese, L.S.,Hellinga, H.W.,Augustine, G.J. Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation. J.Neurosci. 2013 33 16297 16309 3SV5 24107961 Engineered medium-affinity halide-binding protein derived from YFP: iodide complex 2011-07-12 2012-07-18 Grimley, J.S.,Li, L.,Wang, W.,Wen, L.,Beese, L.S.,Hellinga, H.W.,Augustine, G.J. Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation. J.Neurosci. 2013 33 16297 16309 3SVB Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex 2011-07-12 2012-07-18 Wang, W.,Grimley, J.S.,Augustine, G.J.,Beese, L.S.,Hellinga, H.W. Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition To be Published 0 0 0 0 3SVC Engineered medium-affinity halide-binding protein derived from YFP: chloride complex 2011-07-12 2012-07-18 Wang, W.,Grimley, J.S.,Augustine, G.J.,Beese, L.S.,Hellinga, H.W. Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition To be Published 0 0 0 0 3SVD Engineered medium-affinity halide-binding protein derived from YFP: bromide complex 2011-07-12 2012-07-18 Wang, W.,Grimley, J.S.,Augustine, G.J.,Beese, L.S.,Hellinga, H.W. Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition To be Published 0 0 0 0 4FP6 DNA octamer d(gtggccac) with 2'-se modification 2012-06-21 2012-08-15 Zhang, W.,Sheng, J.,Huang, Z. DNA octamer d(gtggccac) with 2'-se modification TO BE PUBLISHED 0 0 0 0 4G27 22929778 Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant and phenylurea 2012-07-11 2012-09-12 Zhang, M.,Pascal, J.M.,Schumann, M.,Armen, R.S.,Zhang, J.F. Identification of the functional binding pocket for compounds targeting small-conductance Ca(2+)-activated potassium channels. Nat Commun 2012 3 1021 1021 4G28 22929778 Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant and EBIO-1 2012-07-11 2012-09-12 Zhang, M.,Pascal, J.M.,Schumann, M.,Armen, R.S.,Zhang, J.F. Identification of the functional binding pocket for compounds targeting small-conductance Ca(2+)-activated potassium channels. Nat Commun 2012 3 1021 1021 4HD0 23080121 Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair 2012-10-01 2012-10-31 Limbo, O.,Moiani, D.,Kertokalio, A.,Wyman, C.,Tainer, J.A.,Russell, P. Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair. Nucleic Acids Res. 2012 40 11435 11449 4I1G dna octamer d(GTseGTACAC) partially crosslinked with two platinums 2012-11-20 2012-12-05 Zhang, W.,Coronado, G.,Huang, Z. dna octamer d(GTseGTACAC) partially crosslinked with two platinums TO BE PUBLISHED 0 0 0 0 4HDD 23353827 Domain swapping in the cytoplasmic domain of the Escherichia coli rhomboid protease 2012-10-02 2013-02-06 Lazareno-Saez, C.,Arutyunova, E.,Coquelle, N.,Lemieux, M.J. Domain swapping in the cytoplasmic domain of the Escherichia coli rhomboid protease. J.Mol.Biol. 2013 425 1127 1142 4II7 23416110 Archaellum Assembly ATPase FlaI 2012-12-20 2013-03-06 Reindl, S.,Ghosh, A.,Williams, G.J.,Lassak, K.,Neiner, T.,Henche, A.L.,Albers, S.V.,Tainer, J.A. Insights into FlaI Functions in Archaeal Motor Assembly and Motility from Structures, Conformations, and Genetics. Mol.Cell 2013 49 1069 1082 4DSL Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium 2012-02-19 2013-03-27 Gan, J.H.,Abdur, R.,Liu, H.H.,Sheng, J.,Caton-Willians, J.,Soares, A.S.,Huang, Z. Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published 0 0 0 0 4DWI Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self complementary DNA, Se-dGTP and Calcium 2012-02-24 2013-03-27 Gan, J.H.,Abdur, R.,Liu, H.H.,Sheng, J.,Caton-Willians, J.,Soares, A.S.,Huang, Z. Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published 0 0 0 0 4J9Y 23487779 Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant 2013-02-17 2013-03-27 Zhang, M.,Pascal, J.M.,Zhang, J.F. Unstructured to structured transition of an intrinsically disordered protein peptide in coupling Ca2+-sensing and SK channel activation. Proc.Natl.Acad.Sci.USA 2013 110 4828 4833 4KIK 23792959 Human IkB kinase beta 2013-05-02 2013-06-26 Liu, S.,Misquitta, Y.R.,Olland, A.,Johnson, M.A.,Kelleher, K.S.,Kriz, R.,Lin, L.L.,Stahl, M.,Mosyak, L. Crystal Structure of a Human I kappa B Kinase beta Asymmetric Dimer. J.Biol.Chem. 2013 288 22758 22767 4EZ9 Bacillus DNA Polymerase I Large Fragment Complex 2 2012-05-02 2013-07-24 Wang, W.,Hellinga, H.W.,Beese, L.S. Structures of a High-fidelity DNA Polymerase to be published 0 0 0 0 4F3O DNA Polymerase I Large Fragment Complex 5 2012-05-09 2013-07-24 Wang, W.,Hellinga, H.W.,Beese, L.S. Structures of a High-fidelity DNA Polymerase to be published 0 0 0 0 4HPJ 23952479 Crystal structure of Tryptophan Synthase at 1.45 A resolution in complex with 2-aminophenol quinonoid in the beta site and the F9 inhibitor in the alpha site 2012-10-23 2013-12-25 Niks, D.,Hilario, E.,Dierkers, A.,Ngo, H.,Borchardt, D.,Neubauer, T.J.,Fan, L.,Mueller, L.J.,Dunn, M.F. Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states. Biochemistry 2013 52 6396 6411 4HT3 23952479 The crystal structure of Salmonella typhimurium Tryptophan Synthase at 1.30A complexed with N-(4'-TRIFLUOROMETHOXYBENZENESULFONYL)-2-AMINO-1-ETHYLPHOSPHATE (F9) inhibitor in the alpha site, internal aldimine 2012-10-31 2014-01-01 Niks, D.,Hilario, E.,Dierkers, A.,Ngo, H.,Borchardt, D.,Neubauer, T.J.,Fan, L.,Mueller, L.J.,Dunn, M.F. Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states. Biochemistry 2013 52 6396 6411 4NZV 24316220 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 2013-12-12 2014-01-08 Shibata, A.,Moiani, D.,Arvai, A.S.,Perry, J.,Harding, S.M.,Genois, M.M.,Maity, R.,van Rossum-Fikkert, S.,Kertokalio, A.,Romoli, F.,Ismail, A.,Ismalaj, E.,Petricci, E.,Neale, M.J.,Bristow, R.G.,Masson, J.Y.,Wyman, C.,Jeggo, P.A.,Tainer, J.A. DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell 2014 53 7 18 4O43 24316220 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 2013-12-18 2014-01-08 Shibata, A.,Moiani, D.,Arvai, A.S.,Perry, J.,Harding, S.M.,Genois, M.M.,Maity, R.,van Rossum-Fikkert, S.,Kertokalio, A.,Romoli, F.,Ismail, A.,Ismalaj, E.,Petricci, E.,Neale, M.J.,Bristow, R.G.,Masson, J.Y.,Wyman, C.,Jeggo, P.A.,Tainer, J.A. DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell 2014 53 7 18 4O4K 24316220 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 2013-12-18 2014-01-08 Shibata, A.,Moiani, D.,Arvai, A.S.,Perry, J.,Harding, S.M.,Genois, M.M.,Maity, R.,van Rossum-Fikkert, S.,Kertokalio, A.,Romoli, F.,Ismail, A.,Ismalaj, E.,Petricci, E.,Neale, M.J.,Bristow, R.G.,Masson, J.Y.,Wyman, C.,Jeggo, P.A.,Tainer, J.A. DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell 2014 53 7 18 4O5G 24316220 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 2013-12-19 2014-01-08 Shibata, A.,Moiani, D.,Arvai, A.S.,Perry, J.,Harding, S.M.,Genois, M.M.,Maity, R.,van Rossum-Fikkert, S.,Kertokalio, A.,Romoli, F.,Ismail, A.,Ismalaj, E.,Petricci, E.,Neale, M.J.,Bristow, R.G.,Masson, J.Y.,Wyman, C.,Jeggo, P.A.,Tainer, J.A. DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell 2014 53 7 18 4KFG The DNA Gyrase B ATP binding domain of Escherichia coli in complex with a small molecule inhibitor. 2013-04-26 2014-01-15 Tari, L.W.,Bensen, D.C.,Finn, J. A new class of type IIA topoisomerase inhibitors with broad-spectrum antibacterial activity To be Published 0 0 0 0 4O24 24316220 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 2013-12-16 2014-01-15 Shibata, A.,Moiani, D.,Arvai, A.S.,Perry, J.,Harding, S.M.,Genois, M.M.,Maity, R.,van Rossum-Fikkert, S.,Kertokalio, A.,Romoli, F.,Ismail, A.,Ismalaj, E.,Petricci, E.,Neale, M.J.,Bristow, R.G.,Masson, J.Y.,Wyman, C.,Jeggo, P.A.,Tainer, J.A. DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell 2014 53 7 18 4ORH 22589545 Crystal structure of RNF8 bound to the UBC13/MMS2 heterodimer 2014-02-11 2014-02-26 Campbell, S.J.,Edwards, R.A.,Leung, C.C.,Neculai, D.,Hodge, C.D.,Dhe-Paganon, S.,Glover, J.N. Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation. J.Biol.Chem. 2012 287 23900 23910 4NCH 24493214 Crystal Structure of Pyrococcus furiosis Rad50 L802W mutation 2013-10-24 2014-03-05 Deshpande, R.A.,Williams, G.J.,Limbo, O.,Williams, R.S.,Kuhnlein, J.,Lee, J.H.,Classen, S.,Guenther, G.,Russell, P.,Tainer, J.A.,Paull, T.T. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J. 2014 33 482 500 4NCI 24493214 Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation 2013-10-24 2014-03-05 Deshpande, R.A.,Williams, G.J.,Limbo, O.,Williams, R.S.,Kuhnlein, J.,Lee, J.H.,Classen, S.,Guenther, G.,Russell, P.,Tainer, J.A.,Paull, T.T. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J. 2014 33 482 500 4NCJ 24493214 Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride 2013-10-24 2014-03-05 Deshpande, R.A.,Williams, G.J.,Limbo, O.,Williams, R.S.,Kuhnlein, J.,Lee, J.H.,Classen, S.,Guenther, G.,Russell, P.,Tainer, J.A.,Paull, T.T. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J. 2014 33 482 500 4NCK 24493214 Crystal Structure of Pyrococcus furiosis Rad50 R797G mutation 2013-10-24 2014-03-05 Deshpande, R.A.,Williams, G.J.,Limbo, O.,Williams, R.S.,Kuhnlein, J.,Lee, J.H.,Classen, S.,Guenther, G.,Russell, P.,Tainer, J.A.,Paull, T.T. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J. 2014 33 482 500 4OJ0 24633408 mCardinal V218E 2014-01-20 2014-03-19 Chu, J.,Haynes, R.D.,Corbel, S.Y.,Li, P.,Gonzalez-Gonzalez, E.,Burg, J.S.,Ataie, N.J.,Lam, A.J.,Cranfill, P.J.,Baird, M.A.,Davidson, M.W.,Ng, H.L.,Garcia, K.C.,Contag, C.H.,Shen, K.,Blau, H.M.,Lin, M.Z. Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein. Nat.Methods 2014 11 572 578 4PPE 24714598 human RNF4 RING domain 2014-02-26 2014-03-26 Groocock, L.M.,Nie, M.,Prudden, J.,Moiani, D.,Wang, T.,Cheltsov, A.,Rambo, R.P.,Arvai, A.S.,Hitomi, C.,Tainer, J.A.,Luger, K.,Perry, J.J.,Lazzerini-Denchi, E.,Boddy, M.N. RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response. Embo Rep. 2014 15 601 608 4ON1 24698179 Crystal Structure of metalloproteinase-II from Bacteroides fragilis 2014-01-28 2014-04-09 Shiryaev, S.A.,Aleshin, A.E.,Muranaka, N.,Kukreja, M.,Routenberg, D.A.,Remacle, A.G.,Liddington, R.C.,Cieplak, P.,Kozlov, I.A.,Strongin, A.Y. Structural and functional diversity of metalloproteinases encoded by the Bacteroides fragilis pathogenicity island. Febs J. 2014 281 2487 2502 4KQD The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ 2013-05-14 2014-07-02 Lu, J.,Glover, J.N.M. The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ To be Published 0 0 0 0 4PLC 24966208 Crystal structure of ancestral apicomplexan lactate dehydrogenase with malate. 2014-05-16 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLF 24966208 Crystal structure of ancestral apicomplexan lactate dehydrogenase with lactate. 2014-05-16 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLG 24966208 Crystal structure of ancestral apicomplexan lactate dehydrogenase with oxamate. 2014-05-16 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLH 24966208 Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate. 2014-05-16 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLT 24966208 Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate. 2014-05-19 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLV 24966208 Crystal structure of ancestral apicomplexan malate dehydrogenase with lactate. 2014-05-19 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLW 24966208 Crystal structure of ancestral apicomplexan malate dehydrogenase with lactate. 2014-05-19 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLY 24966208 Crystal structure of ancestral apicomplexan malate dehydrogenase with malate. 2014-05-19 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4PLZ 24966208 Crystal structure of Plasmodium falciparum lactate dehydrogenase mutant W107fA. 2014-05-20 2014-07-02 Boucher, J.I.,Jacobowitz, J.R.,Beckett, B.C.,Classen, S.,Theobald, D.L. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Elife 2014 3 0 0 4V4H 16998486 Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. 2006-08-04 2014-07-09 Schuwirth, B.S.,Day, J.M.,Hau, C.W.,Janssen, G.R.,Dahlberg, A.E.,Cate, J.H.D.,Vila-Sanjurjo, A. Structural analysis of kasugamycin inhibition of translation. Nat.Struct.Mol.Biol. 2006 13 879 886 4V4I 16962654 Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. 2007-02-15 2014-07-09 Korostelev, A.,Trakhanov, S.,Laurberg, M.,Noller, H.F. Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements Cell(Cambridge,Mass.) 2006 126 1065 1077 4V4J 17940016 Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. 2007-07-18 2014-07-09 Korostelev, A.,Trakhanov, S.,Asahara, H.,Laurberg, M.,Lancaster, L.,Noller, H.F. Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome. Proc.Natl.Acad.Sci.Usa 2007 104 16840 16843 4V4Q 16272117 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. 2005-08-30 2014-07-09 Schuwirth, B.S.,Borovinskaya, M.A.,Hau, C.W.,Zhang, W.,Vila-Sanjurjo, A.,Holton, J.M.,Cate, J.H. Structures of the bacterial ribosome at 3.5 A resolution. Science 2005 310 827 834 4V50 17038497 Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. 2006-08-16 2014-07-09 Berk, V.,Zhang, W.,Pai, R.D.,Cate, J.H.D. Structural basis for mRNA and tRNA positioning on the ribosome. Proc.Natl.Acad.Sci.Usa 2006 103 15830 15834 4V52 17660832 Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. 2007-06-15 2014-07-09 Borovinskaya, M.A.,Pai, R.D.,Zhang, W.,Schuwirth, B.S.,Holton, J.M.,Hirokawa, G.,Kaji, H.,Kaji, A.,Cate, J.H. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol. 2007 14 727 732 4V53 17660832 Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. 2007-06-16 2014-07-09 Borovinskaya, M.A.,Pai, R.D.,Zhang, W.,Schuwirth, B.S.,Holton, J.M.,Hirokawa, G.,Kaji, H.,Kaji, A.,Cate, J.H. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol. 2007 14 727 732 4V54 17660832 Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). 2007-06-16 2014-07-09 Borovinskaya, M.A.,Pai, R.D.,Zhang, W.,Schuwirth, B.S.,Holton, J.M.,Hirokawa, G.,Kaji, H.,Kaji, A.,Cate, J.H. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol. 2007 14 727 732 4V55 17660832 Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). 2007-06-17 2014-07-09 Borovinskaya, M.A.,Pai, R.D.,Zhang, W.,Schuwirth, B.S.,Holton, J.M.,Hirokawa, G.,Kaji, H.,Kaji, A.,Cate, J.H. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol. 2007 14 727 732 4V56 17696316 Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. 2007-07-21 2014-07-09 Borovinskaya, M.A.,Shoji, S.,Holton, J.M.,Fredrick, K.,Cate, J.H. A steric block in translation caused by the antibiotic spectinomycin. Acs Chem.Biol. 2007 2 545 552 4V57 17696316 Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. 2007-07-21 2014-07-09 Borovinskaya, M.A.,Shoji, S.,Holton, J.M.,Fredrick, K.,Cate, J.H. A steric block in translation caused by the antibiotic spectinomycin. Acs Chem.Biol. 2007 2 545 552 4V5Y 17660832 Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). 2007-06-19 2014-07-09 Borovinskaya, M.A.,Pai, R.D.,Zhang, W.,Schuwirth, B.S.,Holton, J.M.,Hirokawa, G.,Kaji, H.,Kaji, A.,Cate, J.H. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol. 2007 14 727 732 4V64 18567815 Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. 2008-06-11 2014-07-09 Borovinskaya, M.A.,Shoji, S.,Fredrick, K.,Cate, J.H.D. Structural basis for hygromycin B inhibition of protein biosynthesis Rna 2008 14 1590 1599 4V89 22187675 Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) 2011-11-17 2014-07-09 Zhou, J.,Lancaster, L.,Trakhanov, S.,Noller, H.F. Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome. Rna 2012 18 230 240 4V9C 22902368 Allosteric control of the ribosome by small-molecule antibiotics 2012-07-25 2014-07-09 Wang, L.,Pulk, A.,Wasserman, M.R.,Feldman, M.B.,Altman, R.B.,Doudna Cate, J.H.,Blanchard, S.C. Allosteric control of the ribosome by small-molecule antibiotics. Nat.Struct.Mol.Biol. 2012 19 957 963 4V9D 21596992 Structures of the bacterial ribosome in classical and hybrid states of tRNA binding 2012-07-31 2014-07-09 Dunkle, J.A.,Wang, L.,Feldman, M.B.,Pulk, A.,Chen, V.B.,Kapral, G.J.,Noeske, J.,Richardson, J.S.,Blanchard, S.C.,Cate, J.H. Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science 2011 332 981 984 4V9J 23812722 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. 2013-04-23 2014-07-09 Zhou, J.,Lancaster, L.,Donohue, J.P.,Noller, H.F. Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 2013 340 1236086 1236086 4V9K 23812722 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. 2013-04-24 2014-07-09 Zhou, J.,Lancaster, L.,Donohue, J.P.,Noller, H.F. Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 2013 340 1236086 1236086 4V9L 23812722 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. 2013-04-24 2014-07-09 Zhou, J.,Lancaster, L.,Donohue, J.P.,Noller, H.F. Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 2013 340 1236086 1236086 4V9M 23812722 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. 2013-04-25 2014-07-09 Zhou, J.,Lancaster, L.,Donohue, J.P.,Noller, H.F. Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 2013 340 1236086 1236086 4V9N 23769667 Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 2013-04-26 2014-07-09 Santos, N.,Zhu, J.,Donohue, J.P.,Korostelev, A.A.,Noller, H.F. Crystal Structure of the 70S Ribosome Bound with the Q253P Mutant Form of Release Factor RF2. Structure 2013 21 1258 1263 4V9O 23812721 Control of ribosomal subunit rotation by elongation factor G 2013-05-03 2014-07-09 Pulk, A.,Cate, J.H. Control of ribosomal subunit rotation by elongation factor G. Science 2013 340 1235970 1235970 4V9P 23812721 Control of ribosomal subunit rotation by elongation factor G 2013-05-03 2014-07-09 Pulk, A.,Cate, J.H. Control of ribosomal subunit rotation by elongation factor G. Science 2013 340 1235970 1235970 4TWS 25040949 Gadolinium Derivative of Tetragonal Hen Egg-White Lysozyme at 1.45 A Resolution 2014-07-01 2014-08-20 Holton, J.M.,Classen, S.,Frankel, K.A.,Tainer, J.A. The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures. Febs J. 2014 281 4046 4060 4QPO 25284757 Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM 2014-06-24 2014-09-03 Peng, Y.,Lu, J.,Wong, J.J.,Edwards, R.A.,Frost, L.S.,Mark Glover, J.N. Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM. J.Mol.Biol. 2014 426 3783 3795 4QPQ 25284757 Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM 2014-06-24 2014-09-24 Peng, Y.,Lu, J.,Wong, J.J.,Edwards, R.A.,Frost, L.S.,Mark Glover, J.N. Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM. J.Mol.Biol. 2014 426 3783 3795 4WNC 25451934 Crystal structure of human wild-type GAPDH at 1.99 angstroms resolution 2014-10-11 2014-12-03 White, M.R.,Khan, M.M.,Deredge, D.,Ross, C.R.,Quintyn, R.,Zucconi, B.E.,Wysocki, V.H.,Wintrode, P.L.,Wilson, G.M.,Garcin, E.D. A Dimer Interface Mutation in Glyceraldehyde-3-Phosphate Dehydrogenase Regulates Its Binding to AU-rich RNA. J.Biol.Chem. 2015 290 1770 1785 4WWW 20855725 Crystal structure of the E. coli ribosome bound to CEM-101 2014-11-12 2014-12-24 Llano-Sotelo, B.,Dunkle, J.,Klepacki, D.,Zhang, W.,Fernandes, P.,Cate, J.H.,Mankin, A.S. Binding and action of CEM-101, a new fluoroketolide antibiotic that inhibits protein synthesis. Antimicrob. Agents Chemother. 2010 54 4961 4970 4P94 25865246 The crystal structure of the soluble domain of Sulfolobus acidocaldarius FlaF (residues 35-164) 2014-04-02 2015-04-22 Banerjee, A.,Tsai, C.L.,Chaudhury, P.,Tripp, P.,Arvai, A.S.,Ishida, J.P.,Tainer, J.A.,Albers, S.V. FlaF Is a beta-Sandwich Protein that Anchors the Archaellum in the Archaeal Cell Envelope by Binding the S-Layer Protein. Structure 2015 23 863 872 4ZBH 25865246 THE CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF SULFOLOBUS ACIDOCALDARIUS FLAF 2015-04-14 2015-04-29 Banerjee, A.,Tsai, C.L.,Chaudhury, P.,Tripp, P.,Arvai, A.S.,Ishida, J.P.,Tainer, J.A.,Albers, S.V. FlaF Is a beta-Sandwich Protein that Anchors the Archaellum in the Archaeal Cell Envelope by Binding the S-Layer Protein. Structure 2015 23 863 872 5AGP 25874809 Structure of rat neuronal nitric oxide synthase heme domain in complex with (S)-2-Amino-5-(2-mercaptoacetimidamido)pentanoic acid 2015-02-02 2015-04-29 Tang, W.,Li, H.,Doud, E.H.,Chen, Y.,Choing, S.,Plaza, C.,Kelleher, N.L.,Poulos, T.L.,Silverman, R.B. Mechanism of Inactivation of Neuronal Nitric Oxide Synthase by (S)-2-Amino-5-(2-(Methylthio)Acetimidamido)Pentanoic Acid. J.Am.Chem.Soc. 2015 137 5980 0 4ONL 25909880 Crystal structure of human Mms2/Ubc13_D81N, R85S, A122V, N123P 2014-01-28 2015-05-06 Hodge, C.D.,Edwards, R.A.,Markin, C.J.,McDonald, D.,Pulvino, M.,Huen, M.S.,Zhao, J.,Spyracopoulos, L.,Hendzel, M.J.,Glover, J.N. Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting. Acs Chem.Biol. 2015 10 1718 1728 4WOI 26224058 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 2014-10-15 2015-08-05 Wasserman, M.R.,Pulk, A.,Zhou, Z.,Altman, R.B.,Zinder, J.C.,Green, K.D.,Garneau-Tsodikova, S.,Doudna Cate, J.H.,Blanchard, S.C. Chemically related 4,5-linked aminoglycoside antibiotics drive subunit rotation in opposite directions. Nat Commun 2015 6 7896 7896 4UUO 26889885 Apo Trichomonas vaginalis malate dehydrogenase 2014-07-29 2015-08-12 Steindel, P.A.,Chen, E.H.,Wirth, J.D.,Theobald, D.L. Gradual Neofunctionalization in the Convergent Evolution of Trichomonad Lactate and Malate Dehydrogenases. Protein Sci. 2016 25 1319 0 4UUP 26889885 Reconstructed ancestral trichomonad malate dehydrogenase in complex with NADH, SO4, and PO4 2014-07-29 2015-08-12 Steindel, P.A.,Chen, E.H.,Wirth, J.D.,Theobald, D.L. Gradual Neofunctionalization in the Convergent Evolution of Trichomonad Lactate and Malate Dehydrogenases. Protein Sci. 2016 25 1319 0 4WHV 26903517 E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B 2014-09-23 2015-09-30 Hodge, C.D.,Ismail, I.H.,Edwards, R.A.,Hura, G.L.,Xiao, A.T.,Tainer, J.A.,Hendzel, M.J.,Glover, J.N. RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. J.Biol.Chem. 2016 291 9396 9410 4YDS 26508112 FlaH from Sulfolobus acidocaldarius with ATP and Mg-Ion 2015-02-23 2015-11-11 Chaudhury, P.,Neiner, T.,D'Imprima, E.,Banerjee, A.,Reindl, S.,Ghosh, A.,Arvai, A.S.,Mills, D.J.,van der Does, C.,Tainer, J.A.,Vonck, J.,Albers, S.V. The nucleotide-dependent interaction of FlaH and FlaI is essential for assembly and function of the archaellum motor. Mol.Microbiol. 2016 99 674 685 5AMM 26598276 Structure of Leishmania major peroxidase D211N mutant 2015-03-11 2015-12-09 Fields, J.B.,Hollingsworth, S.A.,Chreifi, G.,Heyden, M.,Arce, A.P.,Magana-Garcia, H.I.,Poulos, T.L.,Tobias, D.J. ""Bind and Crawl"" Association Mechanism of Leishmania Major Peroxidase and Cytochrome C Revealed by Brownian and Molecular Dynamics Simulations. Biochemistry 2015 54 7272 0 4ZQC 26708480 Tryptophan Synthase from Salmonella typhimurium in complex with two molecules of N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor in the alpha-site and a single F6F molecule in the beta-site at 1.54 Angstrom resolution. 2015-05-08 2016-02-10 Hilario, E.,Caulkins, B.G.,Huang, Y.M.,You, W.,Chang, C.E.,Mueller, L.J.,Dunn, M.F.,Fan, L. Visualizing the tunnel in tryptophan synthase with crystallography: Insights into a selective filter for accommodating indole and rejecting water. Biochim.Biophys.Acta 2016 1864 268 279 4YDD 26940877 Crystal structure of the perchlorate reductase PcrAB from Azospira suillum PS 2015-02-21 2016-03-09 Youngblut, M.D.,Tsai, C.L.,Clark, I.C.,Carlson, H.K.,Maglaqui, A.P.,Gau-Pan, P.S.,Redford, S.A.,Wong, A.,Tainer, J.A.,Coates, J.D. Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. 2016 291 9190 9202 5CH7 26940877 Crystal structure of the perchlorate reductase PcrAB - Phe164 gate switch intermediate - from Azospira suillum PS 2015-07-10 2016-03-09 Youngblut, M.D.,Tsai, C.L.,Clark, I.C.,Carlson, H.K.,Maglaqui, A.P.,Gau-Pan, P.S.,Redford, S.A.,Wong, A.,Tainer, J.A.,Coates, J.D. Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. 2016 291 9190 9202 5CHC 26940877 Crystal structure of the perchlorate reductase PcrAB - substrate analog SeO3 bound - from Azospira suillum PS 2015-07-10 2016-03-09 Youngblut, M.D.,Tsai, C.L.,Clark, I.C.,Carlson, H.K.,Maglaqui, A.P.,Gau-Pan, P.S.,Redford, S.A.,Wong, A.,Tainer, J.A.,Coates, J.D. Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. 2016 291 9190 9202 5E7O 26940877 Crystal structure of the perchlorate reductase PcrAB mutant W461E of PcrA from Azospira suillum PS 2015-10-12 2016-03-09 Youngblut, M.D.,Tsai, C.L.,Clark, I.C.,Carlson, H.K.,Maglaqui, A.P.,Gau-Pan, P.S.,Redford, S.A.,Wong, A.,Tainer, J.A.,Coates, J.D. Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. 2016 291 9190 9202 5I9J 27487925 Structure of the cholesterol and lutein-binding domain of human STARD3 at 1.74A 2016-02-20 2016-03-16 Horvath, M.P.,George, E.W.,Tran, Q.T.,Baumgardner, K.,Zharov, G.,Lee, S.,Sharifzadeh, H.,Shihab, S.,Mattinson, T.,Li, B.,Bernstein, P.S. Structure of the lutein-binding domain of human StARD3 at 1.74 angstrom resolution and model of a complex with lutein. Acta Crystallogr.,Sect.F 2016 72 609 618 5E0U 26688547 Human PCNA variant (S228I) complexed with p21 at 1.9 Angstroms 2015-09-29 2016-04-20 Duffy, C.M.,Hilbert, B.J.,Kelch, B.A. A Disease-Causing Variant in PCNA Disrupts a Promiscuous Protein Binding Site. J.Mol.Biol. 2016 428 1023 1040 5BQL 27649177 Fluorescent protein cyOFP 2015-05-29 2016-06-01 Bajar, B.T.,Wang, E.S.,Zhang, S.,Lin, M.Z.,Chu, J. A Guide to Fluorescent Protein FRET Pairs. Sensors Basel Sensors 2016 16 0 0 4YEW 27482541 HUab-19bp 2015-02-24 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 4YEX 27482541 HUaa-19bp 2015-02-24 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 4YEY 27482541 HUaa-20bp 2015-02-24 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 4YF0 27482541 HU38-19bp 2015-02-24 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 4YFH 27482541 HU38-20bp 2015-02-25 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 4YFT 27482541 HUab-20bp 2015-02-25 2016-06-29 Hammel, M.,Amlanjyoti, D.,Reyes, F.E.,Chen, J.H.,Parpana, R.,Tang, H.Y.,Larabell, C.A.,Tainer, J.A.,Adhya, S. HU multimerization shift controls nucleoid compaction. Sci Adv 2016 2 0 0 5CGQ Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with F9 ligand in the alpha-site and the product L-Tryptophan in the beta-site. 2015-07-09 2016-07-13 Hilario, E.,Caulkins, B.G.,Young, R.P.,Dunn, M.F.,Mueller, L.J.,Fan, L. Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with F9 ligand and the product L-Tryptophan in the beta-site. To Be Published 0 0 0 0 5DS3 26626480 Crystal structure of constitutively active PARP-1 2015-09-16 2016-07-27 Dawicki-McKenna, J.M.,Langelier, M.F.,DeNizio, J.E.,Riccio, A.A.,Cao, C.D.,Karch, K.R.,McCauley, M.,Steffen, J.D.,Black, B.E.,Pascal, J.M. PARP-1 Activation Requires Local Unfolding of an Autoinhibitory Domain. Mol.Cell 2015 60 755 768 5DSY 26626480 Crystal structure of constitutively active PARP-2 2015-09-17 2016-07-27 Dawicki-McKenna, J.M.,Langelier, M.F.,DeNizio, J.E.,Riccio, A.A.,Cao, C.D.,Karch, K.R.,McCauley, M.,Steffen, J.D.,Black, B.E.,Pascal, J.M. PARP-1 Activation Requires Local Unfolding of an Autoinhibitory Domain. Mol.Cell 2015 60 755 768 5CZO 27491543 Structure of S. cerevisiae Hrr25:Mam1 complex, form 2 2015-07-31 2016-08-03 Ye, Q.,Ur, S.N.,Su, T.Y.,Corbett, K.D. Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator. Embo J. 2016 35 2139 2151 5KNI 27499439 Crystal Structure of the wild-type SAM domain of human Tankyrase-1 2016-06-28 2016-08-31 Riccio, A.A.,McCauley, M.,Langelier, M.F.,Pascal, J.M. Tankyrase Sterile alpha Motif Domain Polymerization Is Required for Its Role in Wnt Signaling. Structure 2016 24 1573 1581 5ENW 28179428 Structure of HLA-A2:01 with peptide G9L 2015-11-09 2016-11-09 Remesh, S.G.,Andreatta, M.,Ying, G.,Kaever, T.,Nielsen, M.,McMurtrey, C.,Hildebrand, W.,Peters, B.,Zajonc, D.M. Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT. J. Biol. Chem. 2017 292 5262 5270 5F9J 28179428 Structure of HLA-A2:01 with peptide Y9L 2015-12-09 2016-12-21 Remesh, S.G.,Andreatta, M.,Ying, G.,Kaever, T.,Nielsen, M.,McMurtrey, C.,Hildebrand, W.,Peters, B.,Zajonc, D.M. Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT. J. Biol. Chem. 2017 292 5262 5270 5FDW 28179428 Structure of HLA-A2:01 with peptide Y10L 2015-12-16 2016-12-21 Remesh, S.G.,Andreatta, M.,Ying, G.,Kaever, T.,Nielsen, M.,McMurtrey, C.,Hildebrand, W.,Peters, B.,Zajonc, D.M. Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT. J. Biol. Chem. 2017 292 5262 5270 5TGE 28082398 Thermus Phage P74-26 Large Terminase Nuclease Domain 2016-09-27 2017-01-25 Hilbert, B.J.,Hayes, J.A.,Stone, N.P.,Xu, R.G.,Kelch, B.A. The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain. Nucleic Acids Res. 2017 45 3591 3605 5MZH 28298440 Crystal structure of ODA16 from Chlamydomonas reinhardtii 2017-01-31 2017-03-22 Taschner, M.,Mourao, A.,Awasthi, M.,Basquin, J.,Lorentzen, E. Structural basis of outer dynein arm intraflagellar transport by the transport adaptor protein ODA16 and the intraflagellar transport protein IFT46. J. Biol. Chem. 2017 292 7462 7473 5JNS 28346406 Crystal structure of human low molecular weight protein tyrosine phosphatase (LMPTP) type A complexed with phosphate 2016-04-30 2017-03-29 Stanford, S.M.,Aleshin, A.E.,Zhang, V.,Ardecky, R.J.,Hedrick, M.P.,Zou, J.,Ganji, S.R.,Bliss, M.R.,Yamamoto, F.,Bobkov, A.A.,Kiselar, J.,Liu, Y.,Cadwell, G.W.,Khare, S.,Yu, J.,Barquilla, A.,Chung, T.D.Y.,Mustelin, T.,Schenk, S.,Bankston, L.A.,Liddington, R.C.,Pinkerton, A.B.,Bottini, N. Diabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase. Nat. Chem. Biol. 2017 13 624 632 5JNT 28346406 Crystal structure of human low molecular weight protein tyrosine phosphatase (LMPTP) type A complexed with MES 2016-04-30 2017-03-29 Stanford, S.M.,Aleshin, A.E.,Zhang, V.,Ardecky, R.J.,Hedrick, M.P.,Zou, J.,Ganji, S.R.,Bliss, M.R.,Yamamoto, F.,Bobkov, A.A.,Kiselar, J.,Liu, Y.,Cadwell, G.W.,Khare, S.,Yu, J.,Barquilla, A.,Chung, T.D.Y.,Mustelin, T.,Schenk, S.,Bankston, L.A.,Liddington, R.C.,Pinkerton, A.B.,Bottini, N. Diabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase. Nat. Chem. Biol. 2017 13 624 632 5H5O 23881098 A cyclic-GMP-dependent signalling pathway regulates bacterial phytopathogenesis 2016-11-08 2017-05-24 An, S.Q.,Chin, K.H.,Febrer, M.,McCarthy, Y.,Yang, J.G.,Liu, C.L.,Swarbreck, D.,Rogers, J.,Maxwell Dow, J.,Chou, S.-H.,Ryan, R.P. A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis EMBO J. 2013 32 2430 2438 5UZV 28533382 Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (rI) 2017-02-27 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5V05 28533382 Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (rIII) 2017-02-28 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5V09 28533382 Crystal structure of human exonuclease 1 Exo1 (D225A) in complex with 5' recessed-end DNA (rVII) 2017-02-28 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5V0A 28533382 Crystal structure of human exonuclease 1 Exo1 (D225A) in complex with 5' recessed-end DNA (rVIII) 2017-02-28 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5V0B 28533382 Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (rIX) 2017-02-28 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5V0C 28533382 Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (f2I) 2017-02-28 2017-05-24 Shi, Y.,Hellinga, H.W.,Beese, L.S. Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I. Proc. Natl. Acad. Sci. U.S.A. 2017 114 6010 6015 5K97 28653660 Flap endonuclease 1 (FEN1) D233N with cleaved product fragment and Sm3+ 2016-05-31 2017-06-28 Tsutakawa, S.E.,Thompson, M.J.,Arvai, A.S.,Neil, A.J.,Shaw, S.J.,Algasaier, S.I.,Kim, J.C.,Finger, L.D.,Jardine, E.,Gotham, V.J.B.,Sarker, A.H.,Her, M.Z.,Rashid, F.,Hamdan, S.M.,Mirkin, S.M.,Grasby, J.A.,Tainer, J.A. Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability. Nat Commun 2017 8 15855 15855 5GZ2 luciferase complex with 7-cy-L 2016-09-26 2017-09-27 Su, J.,Wang, F. luciferase complex with 7-cy-L To Be Published 0 0 0 0 5VHV 29054852 Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an oxocarbenium-intermediate analog 2017-04-13 2017-10-25 Shi, R.,Mullins, E.A.,Shen, X.X.,Lay, K.T.,Yuen, P.K.,David, S.S.,Rokas, A.,Eichman, B.F. Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC. EMBO J. 2018 37 63 74 5TNU 29285929 S. tokodaii XPB II crystal structure at 3.0 Angstrom resolution 2016-10-14 2017-11-01 Kahanda, D.,DuPrez, K.T.,Hilario, E.,McWilliams, M.A.,Wohlgamuth, C.H.,Fan, L.,Slinker, J.D. Application of Electrochemical Devices to Characterize the Dynamic Actions of Helicases on DNA. Anal.Chem. 2018 90 2178 2185 5TUG 31844299 Archaellum periplasmic stator protein complex FlaF and FlaG from Sulfolobus acidocaldarius 2016-11-06 2018-01-10 Tsai, C.L.,Tripp, P.,Sivabalasarma, S.,Zhang, C.,Rodriguez-Franco, M.,Wipfler, R.L.,Chaudhury, P.,Banerjee, A.,Beeby, M.,Whitaker, R.J.,Tainer, J.A.,Albers, S.V. The structure of the periplasmic FlaG-FlaF complex and its essential role for archaellar swimming motility. Nat Microbiol 2020 5 216 225 5TUH 31844299 Archaellum periplasmic stator protein FlaG from Sulfolobus acidocaldarius 2016-11-06 2018-01-10 Tsai, C.L.,Tripp, P.,Sivabalasarma, S.,Zhang, C.,Rodriguez-Franco, M.,Wipfler, R.L.,Chaudhury, P.,Banerjee, A.,Beeby, M.,Whitaker, R.J.,Tainer, J.A.,Albers, S.V. The structure of the periplasmic FlaG-FlaF complex and its essential role for archaellar swimming motility. Nat Microbiol 2020 5 216 225 6BHV 29487285 Human PARP-1 bound to NAD+ analog benzamide adenine dinucleotide (BAD) 2017-10-31 2018-02-28 Langelier, M.F.,Zandarashvili, L.,Aguiar, P.M.,Black, B.E.,Pascal, J.M. NAD+analog reveals PARP-1 substrate-blocking mechanism and allosteric communication from catalytic center to DNA-binding domains. Nat Commun 2018 9 844 844 6ASC 29523233 Mre11 dimer in complex with Endonuclease inhibitor PFM04 2017-08-24 2018-03-07 Moiani, D.,Ronato, D.A.,Brosey, C.A.,Arvai, A.S.,Syed, A.,Masson, J.Y.,Petricci, E.,Tainer, J.A. Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities. Meth. Enzymol. 2018 601 205 241 5NQD Arsenite oxidase AioAB from Rhizobium sp. str. NT-26 mutant AioBF108A 2017-04-20 2018-05-30 Santos-Silva, T.,Romao, M.,Vieira, M.,Marques, A.T. Arsenite oxidase AioAB from Rhizobium sp. str. NT-26 mutant AioBF108A To Be Published 0 0 0 0 6ASI 30376300 E. coli phosphoenolpyruvate carboxykinase G209S mutant bound to methanesulfonate 2017-08-24 2018-08-29 Tang, H.Y.H.,Shin, D.S.,Hura, G.L.,Yang, Y.,Hu, X.,Lightstone, F.C.,McGee, M.D.,Padgett, H.S.,Yannone, S.M.,Tainer, J.A. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry 2018 57 6688 6700 6ASM 30376300 E. coli phosphoenolpyruvate carboxykinase G209S K212C mutant bound to thiosulfate 2017-08-25 2018-08-29 Tang, H.Y.H.,Shin, D.S.,Hura, G.L.,Yang, Y.,Hu, X.,Lightstone, F.C.,McGee, M.D.,Padgett, H.S.,Yannone, S.M.,Tainer, J.A. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry 2018 57 6688 6700 6ASN 30376300 E. coli phosphoenolpyruvate carboxykinase K212I F216V mutant bound to methanesulfonate 2017-08-25 2018-08-29 Tang, H.Y.H.,Shin, D.S.,Hura, G.L.,Yang, Y.,Hu, X.,Lightstone, F.C.,McGee, M.D.,Padgett, H.S.,Yannone, S.M.,Tainer, J.A. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry 2018 57 6688 6700 6AT2 30376300 E. coli phosphoenolpyruvate carboxykinase G209N mutant bound to thiosulfate 2017-08-27 2018-08-29 Tang, H.Y.H.,Shin, D.S.,Hura, G.L.,Yang, Y.,Hu, X.,Lightstone, F.C.,McGee, M.D.,Padgett, H.S.,Yannone, S.M.,Tainer, J.A. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry 2018 57 6688 6700 6AT3 30376300 E. coli phosphoenolpyruvate carboxykinase Y207F mutant bound to thiosulfate and oxaloacetate 2017-08-27 2018-08-29 Tang, H.Y.H.,Shin, D.S.,Hura, G.L.,Yang, Y.,Hu, X.,Lightstone, F.C.,McGee, M.D.,Padgett, H.S.,Yannone, S.M.,Tainer, J.A. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry 2018 57 6688 6700 6I7V 30359641 Ribosomal protein paralogs bL31 and bL36 2018-11-19 2018-12-05 Lilleorg, S.,Reier, K.,Pulk, A.,Liiv, A.,Tammsalu, T.,Peil, L.,Cate, J.D.,Remme, J. Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase. Biochimie 2018 156 169 180 6BY1 30552154 E. coli pH03H9 complex 2017-12-19 2019-02-27 Amiri, H.,Noller, H.F. Structural evidence for product stabilization by the ribosomal mRNA helicase. Rna 2019 25 364 375 6MUJ 30824597 Formylglycine generating enzyme bound to copper 2018-10-23 2019-02-27 Appel, M.J.,Meier, K.K.,Lafrance-Vanasse, J.,Lim, H.,Tsai, C.L.,Hedman, B.,Hodgson, K.O.,Tainer, J.A.,Solomon, E.I.,Bertozzi, C.R. Formylglycine-generating enzyme binds substrate directly at a mononuclear Cu(I) center to initiate O2activation. Proc. Natl. Acad. Sci. U.S.A. 2019 116 5370 5375 6CT6 Crystal structure of lactate dehydrogenase from Eimeria maxima with NADH and oxamate 2018-03-22 2019-03-27 Wirth, J.D.,Xu, C.,Boucher, J.I.,Theobald, D.L. The Mechanistic, Structural, and Evolutionary Origin of Lactate Dehydrogenase Substrate Specificity in Apicomplexa To Be Published 0 0 0 0 6BYZ 31086331 Structure of Cysteine-free Human Insulin-Degrading Enzyme in complex with Substrate-selective Macrocyclic Inhibitor 37 2017-12-21 2019-04-03 Maianti, J.P.,Tan, G.A.,Vetere, A.,Welsh, A.J.,Wagner, B.K.,Seeliger, M.A.,Liu, D.R. Substrate-selective inhibitors that reprogram the activity of insulin-degrading enzyme. Nat.Chem.Biol. 2019 15 565 574 6GZ6 30481397 Structure of a left-handed G-quadruplex 2018-07-03 2019-04-24 Bakalar, B.,Heddi, B.,Schmitt, E.,Mechulam, Y.,Phan, A.T. A Minimal Sequence for Left-Handed G-Quadruplex Formation. Angew.Chem.Int.Ed.Engl. 2019 58 2331 2335 6DCX 31402222 iASPP-PP-1c structure and targeting of p53 2018-05-08 2019-05-15 Zhou, Y.,Millott, R.,Kim, H.J.,Peng, S.,Edwards, R.A.,Skene-Arnold, T.,Hammel, M.,Lees-Miller, S.P.,Tainer, J.A.,Holmes, C.F.B.,Glover, J.N.M. Flexible Tethering of ASPP Proteins Facilitates PP-1c Catalysis. Structure 2019 27 1485 0 6DZ4 Crystal structure of Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta-site 2018-07-02 2019-07-10 Hilario, E.,Dunn, M.F.,Mueller, L.J.,Fan, L. Crystal structure of Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta site To be Published 0 0 0 0 6Q0C 31829624 MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with undamaged dG 2019-08-01 2019-08-28 Russelburg, L.P.,O'Shea Murray, V.L.,Demir, M.,Knutsen, K.R.,Sehgal, S.L.,Cao, S.,David, S.S.,Horvath, M.P. Structural Basis for Finding OG Lesions and Avoiding Undamaged G by the DNA Glycosylase MutY. Acs Chem.Biol. 2020 15 93 102 6MF0 31454152 Crystal Structure Determination of Human/Porcine Chimera Coagulation Factor VIII 2018-09-07 2019-09-11 Smith, I.W.,d'Aquino, A.E.,Coyle, C.W.,Fedanov, A.,Parker, E.T.,Denning, G.,Spencer, H.T.,Lollar, P.,Doering, C.B.,Spiegel Jr., P.C. The 3.2 angstrom structure of a bioengineered variant of blood coagulation factor VIII indicates two conformations of the C2 domain. J.Thromb.Haemost. 2020 18 57 69 6U7T 31829624 MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G) 2019-09-03 2019-10-02 Russelburg, L.P.,O'Shea Murray, V.L.,Demir, M.,Knutsen, K.R.,Sehgal, S.L.,Cao, S.,David, S.S.,Horvath, M.P. Structural Basis for Finding OG Lesions and Avoiding Undamaged G by the DNA Glycosylase MutY. Acs Chem.Biol. 2020 15 93 102 6PBK 31844299 Archaellum periplasmic stator protein complex FlaF and FlaG from Sulfolobus acidocaldarius 2019-06-14 2019-11-20 Tsai, C.L.,Tripp, P.,Sivabalasarma, S.,Zhang, C.,Rodriguez-Franco, M.,Wipfler, R.L.,Chaudhury, P.,Banerjee, A.,Beeby, M.,Whitaker, R.J.,Tainer, J.A.,Albers, S.V. The structure of the periplasmic FlaG-FlaF complex and its essential role for archaellar swimming motility. Nat Microbiol 2020 5 216 225 6VDH Crystal structure of ancestral apicomplexan lactate dehydrogenase in alternate dimer configuration with sulfate. 2019-12-27 2020-01-29 Theobald, D.L.,Wirth, J.D.,Classen, S.,Perlmutter, N. Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase To Be Published 0 0 0 0 6VDI Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate. 2019-12-27 2020-01-29 Theobald, D.L.,Wirth, J.D.,Classen, S.,Perlmutter, N. Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase To Be Published 0 0 0 0 6VDJ Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate and NADH4. 2019-12-27 2020-01-29 Theobald, D.L.,Wirth, J.D.,Classen, S.,Perlmutter, N. Mechanism of Bifunctionality in an Ancestral Apicomplexan Malate/Lactate Dehydrogenase To Be Published 0 0 0 0 6TXZ 32313722 FAB PART OF M6903 IN COMPLEX WITH HUMAN TIM3 2020-01-15 2020-04-08 Zhang, D.,Jiang, F.,Zaynagetdinov, R.,Huang, H.,Sood, V.D.,Wang, H.,Zhao, X.,Jenkins, M.H.,Ji, Q.,Wang, Y.,Nannemann, D.P.,Musil, D.,Wesolowski, J.,Paoletti, A.,Bartholomew, T.,Derner, M.G.,An, Q.,Iffland, C.,Halle, J.P. Identification and characterization of M6903, an antagonistic anti-TIM-3 monoclonal antibody. Oncoimmunology 2020 9 1744921 1744921 6TXZ 32313722 FAB PART OF M6903 IN COMPLEX WITH HUMAN TIM3 2020-01-15 2020-04-08 Zhang, D.,Jiang, F.,Zaynagetdinov, R.,Huang, H.,Sood, V.D.,Wang, H.,Zhao, X.,Jenkins, M.H.,Ji, Q.,Wang, Y.,Nannemann, D.P.,Musil, D.,Wesolowski, J.,Paoletti, A.,Bartholomew, T.,Derner, M.G.,An, Q.,Iffland, C.,Halle, J.P. Identification and characterization of M6903, an antagonistic anti-TIM-3 monoclonal antibody. Oncoimmunology 2020 9 1744921 1744921 6P4O Complex of XPB helicase with Bax1 endonuclease from Sulfurisphaera tokodaii at 3.15 Angstroms resolution 2019-05-28 2020-06-03 Fan, L.,DuPrez, K.T. Complex of XPB helicase with Bax1 endonuclease from Sulfurisphaera tokodaii at 3.15 Angstroms resolution To Be Published 0 0 0 0 6X1Y 33115610 Mre11 dimer in complex with small molecule modulator PFMI 2020-05-19 2020-06-10 Wilson 3rd, D.M.,Deacon, A.M.,Duncton, M.A.J.,Pellicena, P.,Georgiadis, M.M.,Yeh, A.P.,Arvai, A.S.,Moiani, D.,Tainer, J.A.,Das, D. Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog.Biophys.Mol.Biol. 2021 163 130 142 6X1Z 33115610 Mre11 dimer in complex with small molecule modulator PFMJ 2020-05-19 2020-06-10 Wilson 3rd, D.M.,Deacon, A.M.,Duncton, M.A.J.,Pellicena, P.,Georgiadis, M.M.,Yeh, A.P.,Arvai, A.S.,Moiani, D.,Tainer, J.A.,Das, D. Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog.Biophys.Mol.Biol. 2021 163 130 142 6P66 32374860 The crystal structure of the XPB complex with Bax1 from Archaeoglobus fulgidus at 3.0 Angstrom resolution 2019-06-03 2020-06-17 DuPrez, K.,He, F.,Chen, Z.,Hilario, E.,Fan, L. Structural basis of the XPB-Bax1 complex as a dynamic helicase-nuclease machinery for DNA repair. Nucleic Acids Res. 2020 48 6326 6339 6VBH 32522879 Human XPG endonuclease catalytic domain 2019-12-18 2020-06-17 Tsutakawa, S.E.,Sarker, A.H.,Ng, C.,Arvai, A.S.,Shin, D.S.,Shih, B.,Jiang, S.,Thwin, A.C.,Tsai, M.S.,Willcox, A.,Her, M.Z.,Trego, K.S.,Raetz, A.G.,Rosenberg, D.,Bacolla, A.,Hammel, M.,Griffith, J.D.,Cooper, P.K.,Tainer, J.A. Human XPG nuclease structure, assembly, and activities with insights for neurodegeneration and cancer from pathogenic mutations. Proc.Natl.Acad.Sci.USA 2020 117 14127 14138 6VKK 32241924 Crystal Structure of human PARP-1 CAT domain bound to inhibitor rucaparib 2020-01-21 2020-06-17 Zandarashvili, L.,Langelier, M.F.,Velagapudi, U.K.,Hancock, M.A.,Steffen, J.D.,Billur, R.,Hannan, Z.M.,Wicks, A.J.,Krastev, D.B.,Pettitt, S.J.,Lord, C.J.,Talele, T.T.,Pascal, J.M.,Black, B.E. Structural basis for allosteric PARP-1 retention on DNA breaks. Science 2020 368 0 0 6VKQ 32241924 Crystal Structure of human PARP-1 CAT domain bound to inhibitor EB-47 2020-01-21 2020-06-17 Zandarashvili, L.,Langelier, M.F.,Velagapudi, U.K.,Hancock, M.A.,Steffen, J.D.,Billur, R.,Hannan, Z.M.,Wicks, A.J.,Krastev, D.B.,Pettitt, S.J.,Lord, C.J.,Talele, T.T.,Pascal, J.M.,Black, B.E. Structural basis for allosteric PARP-1 retention on DNA breaks. Science 2020 368 0 0 6UMQ 32682077 Structure of DUF89 2019-10-10 2020-07-29 Dennis, T.N.,Kenjic, N.,Kang, A.S.,Lowenson, J.D.,Kirkwood, J.S.,Clarke, S.G.,Perry, J.J.P. Human ARMT1 structure and substrate specificity indicates that it is a DUF89 family damage-control phosphatase. J.Struct.Biol. 2020 212 107576 107576 6UMR 32682077 Structure of DUF89 - D291A mutant 2019-10-10 2020-07-29 Dennis, T.N.,Kenjic, N.,Kang, A.S.,Lowenson, J.D.,Kirkwood, J.S.,Clarke, S.G.,Perry, J.J.P. Human ARMT1 structure and substrate specificity indicates that it is a DUF89 family damage-control phosphatase. J.Struct.Biol. 2020 212 107576 107576 7CJQ Structure of DLA-88*001:04 2020-07-12 2020-08-26 Sun, Y.J.,Ma, L.Z.,Li, S. Structure of canine MHC class I at 2.7 Angstroms resolution To Be Published 0 0 0 0 6WH1 33330937 Structure of the complex of human DNA ligase III-alpha and XRCC1 BRCT domains 2020-04-07 2020-12-02 Hammel, M.,Rashid, I.,Sverzhinsky, A.,Pourfarjam, Y.,Tsai, M.S.,Ellenberger, T.,Pascal, J.M.,Kim, I.K.,Tainer, J.A.,Tomkinson, A.E. An atypical BRCT-BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase III alpha within a flexible DNA repair complex. Nucleic Acids Res. 2021 49 306 321 6WH2 33330937 Structure of the C-terminal BRCT domain of human XRCC1 2020-04-07 2020-12-02 Hammel, M.,Rashid, I.,Sverzhinsky, A.,Pourfarjam, Y.,Tsai, M.S.,Ellenberger, T.,Pascal, J.M.,Kim, I.K.,Tainer, J.A.,Tomkinson, A.E. An atypical BRCT-BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase III alpha within a flexible DNA repair complex. Nucleic Acids Res. 2021 49 306 321 6VJR Oxygen tolerant Archeal 4hydroxybutyrylCoA dehydratase (4HBD) from N. maritimus 2020-01-17 2021-01-27 Demirci, H.,Wakatsuki, S. Structural adaptation of oxygen tolerance in a key archaeal carbon fixation enzyme To Be Published 0 0 0 0 6VNT Tryptophan synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the alpha-site, aminoacrylate at the beta site, and sodium ion at the metal coordination site at 1.25 Angstrom resolution 2020-01-29 2021-02-03 Hilario, E.,Fan, L.,Dunn, M.F.,Mueller, L.J. Tryptophan synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the alpha-site, aminoacrylate at the beta site, and sodium ion at the metal coordination site at 1.25 Angstrom resolution. To be Published 0 0 0 0 6WDU The external aldimine form of the Salmonella thypi wild-type tryptophan synthase in open conformation showing multiple side chain conformations for the residue beta Q114 and sodium ion at the metal coordination site. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring. 2020-04-01 2021-03-10 Hilario, E.,Fan, L.,Dunn, M.F.,Mueller, L.J. The external aldimine form of the Salmonella thypi wild-type tryptophan synthase in open conformation showing multiple side chain conformations for the residue beta Q114 and sodium ion at the metal coordination site. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring. To be Published 0 0 0 0 6WX3 High resolution Tryptophan Synthase crystal structure from Salmonella typhimurium in complex with F9 inhibitor in the alpha-site, Cesium ion at the metal coordination site and internal aldimine form. 2020-05-09 2021-03-10 Hilario, E.,Fan, L.,Dunn, M.F.,Mueller, L.J. High resolution Tryptophan Synthase crystal structure from Salmonella typhimurium in complex with F9 inhibitor in the alpha-site, Cesium ion at the metal coordination site and internal aldimine form. To be Published 0 0 0 0 6WNN Bacillus subtilis BioA in complex with amino donor L-Lys 2020-04-22 2021-04-28 Cramer, J.,Kubota, C.,Souza, S.A.,Morris, J.,Ng, H.L.,Sun, R.,Jarrett, J.T. Substrate divergence in 7,8-diaminopelargonic acid synthesis: mutagenesis and computational studies of L-lysine dependent Bacillus subtilis BioA To Be Published 0 0 0 0 6XQ7 34156100 Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 5 2020-07-09 2021-07-14 Kozlyuk, N.,Gilston, B.A.,Salay, L.E.,Gogliotti, R.D.,Christov, P.P.,Kim, K.,Ovee, M.,Waterson, A.G.,Chazin, W.J. A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors. Proteins 2021 89 1399 1412 7LW7 34197737 Human Exonuclease 5 crystal structure 2021-02-27 2021-07-14 Hambarde, S.,Tsai, C.L.,Pandita, R.K.,Bacolla, A.,Maitra, A.,Charaka, V.,Hunt, C.R.,Kumar, R.,Limbo, O.,Le Meur, R.,Chazin, W.J.,Tsutakawa, S.E.,Russell, P.,Schlacher, K.,Pandita, T.K.,Tainer, J.A. EXO5-DNA structure and BLM interactions direct DNA resection critical for ATR-dependent replication restart. Mol.Cell 2021 81 2989 0 7KC3 X-ray structure of Lfa-1 I domain collected at 273 K 2020-10-05 2021-10-06 Woldeyes, R.A.,Hallenbeck, K.K.,Pfaff, S.J.,Lee, G.,Cortez, S.V.,Kelly, M.J.,Akassoglou, K.,Arkin, M.R.,Fraser, J.S. Divergent conformational dynamics controls allosteric ligand accessibility across evolutionarily related I-domain-containing integrins To Be Published 0 0 0 0 7LML 34156100 Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid 2021-02-05 2021-12-15 Kozlyuk, N.,Gilston, B.A.,Salay, L.E.,Gogliotti, R.D.,Christov, P.P.,Kim, K.,Ovee, M.,Waterson, A.G.,Chazin, W.J. A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors. Proteins 2021 89 1399 1412 7MT4 34996869 Crystal structure of tryptophan Synthase in complex with F9, NH4+, pH7.8 - alpha aminoacrylate form - E(A-A) 2021-05-12 2021-12-29 Holmes, J.B.,Liu, V.,Caulkins, B.G.,Hilario, E.,Ghosh, R.K.,Drago, V.N.,Young, R.P.,Romero, J.A.,Gill, A.D.,Bogie, P.M.,Paulino, J.,Wang, X.,Riviere, G.,Bosken, Y.K.,Struppe, J.,Hassan, A.,Guidoulianov, J.,Perrone, B.,Mentink-Vigier, F.,Chang, C.A.,Long, J.R.,Hooley, R.J.,Mueser, T.C.,Dunn, M.F.,Mueller, L.J. Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase alpha-aminoacrylate intermediate. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7MT5 34996869 Crystal structure of tryptophan synthase in complex with F9, Cs+, pH7.8 - alpha aminoacrylate form - E(A-A) 2021-05-12 2021-12-29 Holmes, J.B.,Liu, V.,Caulkins, B.G.,Hilario, E.,Ghosh, R.K.,Drago, V.N.,Young, R.P.,Romero, J.A.,Gill, A.D.,Bogie, P.M.,Paulino, J.,Wang, X.,Riviere, G.,Bosken, Y.K.,Struppe, J.,Hassan, A.,Guidoulianov, J.,Perrone, B.,Mentink-Vigier, F.,Chang, C.A.,Long, J.R.,Hooley, R.J.,Mueser, T.C.,Dunn, M.F.,Mueller, L.J. Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase alpha-aminoacrylate intermediate. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7LEV The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with ammonium ion at the metal coordination site at 1.70 Angstrom resolution 2021-01-15 2022-01-19 Hilario, E.,Dunn, M.F.,Mueller, L.J. The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with ammonium ion at the metal coordination site at 1.70 Angstrom resolution. To be Published 0 0 0 0 7LKL The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, cesium ion at the metal coordination site and the product L-tryptophan at the enzyme beta-site at 1.05 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring 2021-02-02 2022-02-02 Hilario, E.,Dunn, M.F.,Mueller, L.J. The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, cesium ion at the metal coordination site and the product L-tryptophan at the enzyme beta-site at 1.05 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring. To be Published 0 0 0 0 7LQO Crystal structure of a genetically encoded red fluorescent peroxynitrite biosensor, pnRFP 2021-02-14 2022-03-16 Pang, Y.,Huang, M.,Zhang, S.,Fan, Y.,Yeh, H.,Xiong, Y.,Li, X.,Ng, H.L.,Ai, H. Development, Characterization, and Structural Analysis of a Genetically Encoded Red Fluorescent Peroxynitrite Biosensor To Be Published 0 0 0 0 7N8V Crystal structure of free ERI2 nuclease 2021-06-15 2022-07-06 Thapar, R.,Arvai, A.S.,Tainer, J.A. Crystal structure of free ERI2 nuclease To Be Published 0 0 0 0 7N8W Crystal structure of ERI2 nuclease bound to rAMP 2021-06-15 2022-07-06 Thapar, R.,Arvai, A.S.,Tainer, J.A. Crystal structure of ERI2 nuclease bound to rAMP To Be Published 0 0 0 0 7RHB A new fluorescent protein darkmRuby at pH 8.0 2021-07-16 2022-07-27 Huang, M.,Zhang, S.,Deng, M.,Zou, Y.,Lin, M.Z.,Ng, H.L.,Chu, J. A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein To Be Published 0 0 0 0 7RHC A new fluorescent protein darkmRuby at pH 9.0 2021-07-16 2022-07-27 Huang, M.,Zhang, S.,Deng, M.,Zou, Y.,Lin, M.Z.,Ng, H.L.,Chu, J. A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein To Be Published 0 0 0 0 7WQ5 36001661 Crystal structure of Arabidopsis transcriptional factor WRINKLED1 with dsDNA 2022-01-24 2022-08-31 Qiao, Z.,Kong, Q.,Tee, W.T.,Lim, A.R.Q.,Teo, M.X.,Olieric, V.,Low, P.M.,Yang, Y.,Qian, G.,Ma, W.,Gao, Y.G. Molecular basis of the key regulator WRINKLED1 in plant oil biosynthesis. Sci Adv 2022 8 0 0 7UBA Structure of fungal Hop1 CBR domain 2022-03-14 2023-03-29 Ur, S.N.,Corbett, K.D. Structure of fungal Hop1 CBR domain To Be Published 0 0 0 0 7MXQ Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (r-1) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXR Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (r-2) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXT Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cmr) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 7MXU Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (cf2) 2021-05-19 2023-05-10 Shi, Y.,Hellinga, H.W.,Beese, L.S. Structures of reaction intermediates reveal transient Mg2+-binding events that dynamically coordinate Human Exonuclease I activities To Be Published 0 0 0 0 8UK7 Periplasmic domain of Escherichia coli CpxA 2023-10-12 2023-10-25 Cho, T.H.S.,Murray, C.R.A.,Malpica, R.,Margain-Quevedo, R.,Thede, G.L.,Edwards, R.A.,Glover, M.J.N.,Raivio, T.L. The sensor of the bacterial histidine kinase CpxA is a novel dimer of extracytoplasmic Per-ARNT-Sim (PAS) domains To Be Published 0 0 0 0