PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1IQV 11686933 Crystal Structure Analysis of the archaebacterial ribosomal protein S7 2001-08-07 2001-08-29 Hosaka, H.,Yao, M.,Kimura, M.,Tanaka, I. The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA. J.Biochem. 2001 130 695 701 1K9A 11884384 Crystal structure analysis of full-length carboxyl-terminal Src kinase at 2.5 A resolution 2001-10-28 2002-03-20 Ogawa, A.,Takayama, Y.,Sakai, H.,Chong, K.T.,Takeuchi, S.,Nakagawa, A.,Nada, S.,Okada, M.,Tsukihara, T. Structure of the carboxyl-terminal Src kinase, Csk. J.Biol.Chem. 2002 277 14351 14354 1IQ8 12054814 Crystal Structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii 2001-07-09 2002-05-22 Ishitani, R.,Nureki, O.,Fukai, S.,Kijimoto, T.,Nameki, N.,Watanabe, M.,Kondo, H.,Sekine, M.,Okada, N.,Nishimura, S.,Yokoyama, S. 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Nat.Struct.Biol. 2002 9 527 531 1IVU 12134140 Crystal structure of copper amine oxidase from Arthrobacter globiformis: Initial intermediate in topaquinone biogenesis 2002-03-29 2002-08-07 Kim, M.,Okajima, T.,Kishishita, S.,Yoshimura, M.,Kawamori, A.,Tanizawa, K.,Yamaguchi, H. X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase. Nat.Struct.Biol. 2002 9 591 596 1IWO 12167852 Crystal structure of the SR Ca2+-ATPase in the absence of Ca2+ 2002-05-26 2002-08-14 Toyoshima, C.,Nomura, H. Structural changes in the calcium pump accompanying the dissociation of calcium Nature 2002 418 605 611 1IWG 12374972 Crystal structure of Bacterial Multidrug Efflux transporter AcrB 2002-05-15 2002-10-23 Murakami, S.,Nakashima, R.,Yamashita, E.,Yamaguchi, A. Crystal structure of bacterial multidrug efflux transporter AcrB NATURE 2002 419 587 593 1IXJ 12466550 Crystal Structure of d(GCGAAAGCT) Containing Parallel-stranded Duplex with Homo Base Pairs and Anti-Parallel Duplex with Watson-Crick Base pairs 2002-06-22 2002-12-11 Sunami, T.,Kondo, J.,Kobuna, T.,Hirao, I.,Watanabe, K.,Miura, K.,Takenaka, A. Crystal Structure of d(GCGAAAGCT) Containing a Parallel-stranded Duplex with Homo Base Pairs and an Anti-Parallel Duplex with Watson-Crick Base pairs Nucleic Acids Res. 2002 30 5253 5260 1N4K 12442173 Crystal structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with IP3 2002-10-31 2002-12-25 Bosanac, I.,Alattia, J.R.,Mal, T.K.,Chan, J.,Talarico, S.,Tong, F.K.,Tong, K.I.,Yoshikawa, F.,Furuichi, T.,Iwai, M.,Michikawa, T.,Mikoshiba, K.,Ikura, M. Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand. Nature 2002 420 696 700 1J1G 12731868 Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP 2002-12-04 2003-05-20 Numata, T.,Suzuki, A.,Kakuta, Y.,Kimura, K.,Yao, M.,Tanaka, I.,Yoshida, Y.,Ueda, T.,Kimura, M. Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity Biochemistry 2003 42 5270 5278 1UEC 15147273 Crystal structure of autoinhibited form of tandem SH3 domain of p47phox 2003-05-11 2003-05-27 Yuzawa, S.,Suzuki, N.N.,Fujioka, Y.,Ogura, K.,Sumimoto, H.,Inagaki, F. A molecular mechanism for autoinhibition of the tandem SH3 domains of p47phox, the regulatory subunit of the phagocyte NADPH oxidase Genes Cells 2004 9 443 456 1J1N 12486124 Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide 2002-12-11 2003-06-10 Mishima, Y.,Momma, K.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution J.BIOL.CHEM. 2003 278 6552 6559 1IYW 12554880 Preliminary Structure of Thermus thermophilus Ligand-Free Valyl-tRNA Synthetase 2002-09-10 2003-06-17 Fukai, S.,Nureki, O.,Sekine, S.,Shimada, A.,Vassylyev, D.G.,Yokoyama, S. Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase RNA 2003 9 100 111 1UHG 12840013 Crystal Structure of S-Ovalbumin At 1.9 Angstrom Resolution 2003-07-03 2003-07-22 Yamasaki, M.,Takahashi, N.,Hirose, M. Crystal Structure of S-ovalbumin as a Non-loop-inserted Thermostabilized Serpin Form J.Biol.Chem. 2003 278 35524 35530 1IYB 12484757 Crystal Structure of the Nicotiana glutinosa Ribonuclease NW 2002-08-05 2003-08-05 Kawano, S.,Kakuta, Y.,Kimura, M. Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography Biochemistry 2002 41 15195 15202 1UIM 12952961 Crystal Structure of Threonine Synthase from Thermus Thermophilus HB8, Orthorhombic Crystal Form 2003-07-17 2003-11-18 Omi, R.,Masaru, G.,Miyahara, I.,Mizuguchi, H.,Hayashi, H.,Kagamiyama, H.,Hirotsu, K. Crystal Structures of Threonine Synthase from Thermus thermophilus HB8: Conformational change, substrate recognition, and mechanism. J.BIOL.CHEM. 2003 278 46035 46045 1J2F 14555995 X-ray crystal structure of IRF-3 and its functional implications 2003-01-04 2003-11-25 Takahasi, K.,Suzuki, N.N.,Horiuchi, M.,Mori, M.,Suhara, W.,Okabe, Y.,Fukuhara, Y.,Terasawa, H.,Akira, S.,Fujita, T.,Inagaki, F. X-ray crystal structure of IRF-3 and its functional implications. Nat.Struct.Biol. 2003 10 922 927 1UEV 14592988 Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure 2003-05-21 2003-12-02 Okabe, M.,Tomita, K.,Ishitani, R.,Ishii, R.,Takeuchi, N.,Arisaka, F.,Nureki, O.,Yokoyama, S. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J. 2003 22 5918 5927 1UKL 14645851 Crystal structure of Importin-beta and SREBP-2 complex 2003-08-26 2003-12-09 Lee, S.J.,Sekimoto, T.,Yamashita, E.,Nagoshi, E.,Nakagawa, A.,Imamoto, N.,Yoshimura, M.,Sakai, H.,Chong, K.T.,Tsukihara, T.,Yoneda, Y. The Structure of Importin-beta Bound to SREBP-2: Nuclear Import of a Transcription Factor Science 2003 302 1571 1575 1UKL 14645851 Crystal structure of Importin-beta and SREBP-2 complex 2003-08-26 2003-12-09 Lee, S.J.,Sekimoto, T.,Yamashita, E.,Nagoshi, E.,Nakagawa, A.,Imamoto, N.,Yoshimura, M.,Sakai, H.,Chong, K.T.,Tsukihara, T.,Yoneda, Y. The Structure of Importin-beta Bound to SREBP-2: Nuclear Import of a Transcription Factor Science 2003 302 1571 1575 1V54 14673090 Bovine heart cytochrome c oxidase at the fully oxidized state 2003-11-21 2003-12-23 Tsukihara, T.,Shimokata, K.,Katayama, Y.,Shimada, H.,Muramoto, K.,Aoyama, H.,Mochizuki, M.,Shinzawa-Itoh, K.,Yamashita, E.,Yao, M.,Ishimura, Y.,Yoshikawa, S. The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process. Proc.Natl.Acad.Sci.Usa 2003 100 15304 15309 1V55 14673090 Bovine heart cytochrome c oxidase at the fully reduced state 2003-11-21 2003-12-23 Tsukihara, T.,Shimokata, K.,Katayama, Y.,Shimada, H.,Muramoto, K.,Aoyama, H.,Mochizuki, M.,Shinzawa-Itoh, K.,Yamashita, E.,Yao, M.,Ishimura, Y.,Yoshikawa, S. The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process. Proc.Natl.Acad.Sci.Usa 2003 100 15304 15309 1UH2 14687576 Thermoactinomyces vulgaris R-47 alpha-amylase/malto-hexaose complex 2003-06-23 2004-01-13 Abe, A.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol. 2004 335 811 822 1UH4 14687576 Thermoactinomyces vulgaris R-47 alpha-amylase 1/malto-tridecaose complex 2003-06-24 2004-01-13 Abe, A.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol. 2004 335 811 822 1UHY 14646150 Crystal structure of d(GCGATAGC): the base-intercalated duplex 2003-07-13 2004-02-03 Kondo, J.,Umeda, S.I.,Fujita, K.,Sunami, T.,Takenaka, A. X-ray analyses of d(GCGAXAGC) containing G and T at X: the base-intercalated duplex is still stable even in point mutants at the fifth residue. J.Synchrotron Radiat. 2004 11 117 120 1UKP 14631070 Crystal structure of soybean beta-amylase mutant substituted at surface region 2003-08-31 2004-02-10 Kang, Y.N.,Adachi, M.,Mikami, B.,Utsumi, S. Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues Protein Eng. 2003 16 809 817 1UE0 14672940 Isoleucyl-tRNA synthetase editing domain complexed with L-Valine 2003-05-08 2004-03-23 Fukunaga, R.,Fukai, S.,Ishitani, R.,Nureki, O.,Yokoyama, S. Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine. J.Biol.Chem. 2004 279 8396 8402 1UDW 15130468 Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP 2003-05-07 2004-05-04 Suzuki, N.N.,Koizumi, K.,Fukushima, M.,Matsuda, A.,Inagaki, F. Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase STRUCTURE 2004 12 751 764 1UEI 15130468 Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, UTP 2003-05-16 2004-05-04 Suzuki, N.N.,Koizumi, K.,Fukushima, M.,Matsuda, A.,Inagaki, F. Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase STRUCTURE 2004 12 751 764 1UFQ 15130468 Crystal structure of ligand-free human uridine-cytidine kinase 2 2003-06-06 2004-05-04 Suzuki, N.N.,Koizumi, K.,Fukushima, M.,Matsuda, A.,Inagaki, F. Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase STRUCTURE 2004 12 751 764 1V9Z 14982921 Crystal Structure of the heme PAS sensor domain of Ec DOS (Ferrous Form) 2004-02-04 2004-05-25 Kurokawa, H.,Lee, D.S.,Watanabe, M.,Sagami, I.,Mikami, B.,Raman, C.S.,Shimizu, T. A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J.Biol.Chem. 2004 279 20186 20193 1VF7 15117957 Crystal structure of the membrane fusion protein, MexA of the multidrug transporter 2004-04-09 2004-05-25 Akama, H.,Matsuura, T.,Kashiwagi, S.,Yoneyama, H.,Narita, S.,Tsukihara, T.,Nakagawa, A.,Nakae, T. Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa J.Biol.Chem. 2004 279 25939 25942 1UF5 Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine 2003-05-23 2004-06-08 Hashimoto, H.,Aoki, M.,Shimizu, T.,Nakai, T.,Morikawa, H.,Ikenaka, Y.,Takahashi, S.,Sato, M. Crystal structure of C171A/V236A mutant of N-carbamyl-D-amino acid amidohydrolase To be published 0 0 0 0 1V3O 15133122 Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex 2003-11-03 2004-06-08 Kondo, J.,Adachi, W.,Umeda, S.,Sunami, T.,Takenaka, A. Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res. 2004 32 2541 2549 1UAX Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3 2003-03-24 2004-06-29 Hata, T.,Numata, T.,Kakuta, Y.,Kimura, M. Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3 To be published 0 0 0 0 1UIK 14747705 Crystal structure of soybean beta-conglycinin alpha prime homotrimer 2003-07-16 2004-07-16 Maruyama, Y.,Maruyama, N.,Mikami, B.,Utsumi, S. Structure of the core region of the soybean beta-conglycinin alpha' subunit. Acta Crystallogr.,Sect.D 2004 60 289 297 1V7H 15386273 Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.26 A 2003-12-17 2004-08-03 Okuyama, K.,Hongo, C.,Fukushima, R.,Wu, G.,Narita, H.,Noguchi, K.,Tanaka, Y.,Nishino, N. Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering Biopolymers 2004 76 367 377 1VGI 15312758 Crystal structure of xenon bound rat heme-heme oxygenase-1 complex 2004-04-26 2004-08-31 Sugishima, M.,Sakamoto, H.,Noguchi, M.,Fukuyama, K. CO-trapping site in heme oxygenase revealed by photolysis of its co-bound heme complex: mechanism of escaping from product inhibition J.Mol.Biol. 2004 341 7 13 1WOQ 15377666 Crystal Structure of Inorganic Polyphosphate/ATP-Glucomannokinase From Arthrobacter sp. strain KM At 1.8 A Resolution 2004-08-24 2004-09-28 Mukai, T.,Kawai, S.,Mori, S.,Mikami, B.,Murata, K. Crystal Structure of Bacterial Inorganic Polyphosphate/ATP-glucomannokinase: INSIGHTS INTO KINASE EVOLUTION J.Biol.Chem. 2004 279 50591 50600 1WPG 15448704 Crystal structure of the SR CA2+-ATPase with MGF4 2004-09-02 2004-10-05 Toyoshima, C.,Nomura, H.,Tsuda, T. Lumenal gating mechanism revealed in calcium pump crystal structures with phosphate analogues Nature 2004 432 361 368 1WP1 15507433 Crystal structure of the drug-discharge outer membrane protein, OprM 2004-08-28 2004-11-02 Akama, H.,Kanemaki, M.,Yoshimura, M.,Tsukihara, T.,Kashiwagi, T.,Yoneyama, H.,Narita, S.,Nakagawa, A.,Nakae, T. Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end J.Biol.Chem. 2004 279 52816 52819 1WRI 15513928 Crystal Structure of Ferredoxin isoform II from E. arvense 2004-10-18 2004-11-02 Kurisu, G.,Nishiyama, D.,Kusunoki, M.,Fujikawa, S.,Katoh, M.,Hanke, G.T.,Hase, T.,Teshima, K. A structural basis of Equisetum arvense ferredoxin isoform II producing an alternative electron transfer with ferredoxin-NADP+ reductase. J.Biol.Chem. 2005 280 2275 2281 1WD7 Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal) 2004-05-12 2004-11-12 Mizohata, E.,Matsuura, T.,Sakai, H.,Murayama, K.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal) to be published 0 0 0 0 1WDD 22609438 Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate 2004-05-13 2004-11-13 Matsumura, H.,Mizohata, E.,Ishida, H.,Kogami, A.,Ueno, T.,Makino, A.,Inoue, T.,Yokota, A.,Mae, T.,Kai, Y. Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate J.Mol.Biol. 2012 422 75 86 1WSH Crystal structure of E.coli RNase HI active site mutant (E48A/K87A) 2004-11-07 2004-11-23 0 0 0 0 1WSI Crystal structure of E.coli RNase HI active site mutant (E48A/K87A/D134N) 2004-11-07 2004-11-23 0 0 0 0 1WSJ Crystal structure of E.coli RNase HI active site mutant (K87A/H124A) 2004-11-07 2004-11-23 0 0 0 0 1V5C 15465062 The crystal structure of the inactive form chitosanase from Bacillus sp. K17 at pH3.7 2003-11-22 2004-12-07 Adachi, W.,Sakihama, Y.,Shimizu, S.,Sunami, T.,Fukazawa, T.,Suzuki, M.,Yatsunami, R.,Nakamura, S.,Takenaka, A. Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17 J.MOL.BIOL. 2004 343 785 795 1V5D 15465062 The crystal structure of the active form chitosanase from Bacillus sp. 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The crystal structures of semi-synthetic aequorins Protein Sci. 2005 14 409 416 1UHK 15632284 Crystal structure of n-aequorin 2003-07-03 2005-02-08 Toma, S.,Chong, K.T.,Nakagawa, A.,Teranishi, K.,Inouye, S.,Shimomura, O. The crystal structures of semi-synthetic aequorins Protein Sci. 2005 14 409 416 1VFM 15138257 Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/alpha-cyclodextrin complex 2004-04-16 2005-02-08 Ohtaki, A.,Mizuno, M.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM. 2004 279 31033 31040 1VFU 15138257 Crystal structure of Thermoactinomyces vulgaris R-47 amylase 2/gamma-cyclodextrin complex 2004-04-19 2005-02-08 Ohtaki, A.,Mizuno, M.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM. 2004 279 31033 31040 1WSF 15644213 Co-crystal structure of E.coli RNase HI active site mutant (D134A*) with Mn2+ 2004-11-05 2005-02-08 Tsunaka, Y.,Takano, K.,Matsumura, H.,Yamagata, Y.,Kanaya, S. Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography J.Mol.Biol. 2005 345 1171 1183 1V53 The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans 2003-11-20 2005-02-15 Fujita, K.,Minami, H.,Suzuki, K.,Tsunoda, M.,Sekiguchi, T.,Mizui, R.,Tsuzaki, S.,Nakamura, S.,Takenaka, A. The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans To be Published 0 0 0 0 1V59 Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ 2003-11-21 2005-02-15 Adachi, W.,Suzuki, K.,Tsunoda, M.,Sekiguchi, T.,Reed, L.J.,Takenaka, A. Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ To be Published 0 0 0 0 1V5B The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans 2003-11-22 2005-02-15 Fujita, K.,Tsuchiya, D.,Adachi, W.,Suzuki, K.,Tsunoda, M.,Minami, H.,Sekiguchi, T.,Kobayashi, N.,Mizui, R.,Tsuzaki, S.,Nakamura, S.,Takenaka, A. Crystal structure of a highly thermo-stabilized mutant of 3-isopropylmalate dehydrogenase from Bacillus coagulans: An evaluation of local packing density in the hydrophobic core To be Published 0 0 0 0 1WE5 Crystal Structure of Alpha-Xylosidase from Escherichia coli 2004-05-24 2005-02-15 Ose, T.,Kitamura, M.,Okuyama, M.,Mori, H.,Kimura, A.,Watanabe, N.,Yao, M.,Tanaka, I. Crystal Structure of Alpha-Xylosidase from Escherichia coli TO BE PUBLISHED 0 0 0 0 1WQ5 15667212 Crystal structure of tryptophan synthase alpha-subunit from Escherichia coli 2004-09-22 2005-02-15 Nishio, K.,Morimoto, Y.,Ishizuka, M.,Ogasahara, K.,Tsukihara, T.,Yutani, K. 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Crystal Structure of UbcH8 To be Published 0 0 0 0 1X0M 16138312 a Human Kynurenine Aminotransferase II Homologue from Pyrococcus horikoshii OT3 2005-03-24 2005-04-12 Chon, H.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3 at 2.20 A resolution Proteins 2005 61 685 688 1Y3N 15794643 Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide 2004-11-26 2005-04-12 Momma, K.,Mishima, Y.,Hashimoto, W.,Mikami, B.,Murata, K. Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry 2005 44 5053 5064 1Y3P 15794643 Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide 2004-11-26 2005-04-12 Momma, K.,Mishima, Y.,Hashimoto, W.,Mikami, B.,Murata, K. Direct Evidence for Sphingomonas sp. 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Structures of the thermophilic F1-ATPase {varepsilon} subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1 Proc.Natl.Acad.Sci.Usa 2007 104 11233 11238 2DZV Structure of mutant tryptophan synthase alpha-subunit (D146A) from a hyperthermophile, Pyrococcus furiosus 2006-09-30 2007-08-28 Ogasahara, K.,Yamagata, Y.,Yutani, K. Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus To be Published 0 0 0 0 2E3H 17563362 Crystal structure of the CLIP-170 CAP-Gly domain 2 2006-11-26 2007-08-28 Mishima, M.,Maesaki, R.,Kasa, M.,Watanabe, T.,Fukata, M.,Kaibuchi, K.,Hakoshima, T. Structural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition Proc.Natl.Acad.Sci.Usa 2007 104 10346 10351 2E5A 17570395 Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP 2006-12-19 2007-09-04 Fujiwara, K.,Hosaka, H.,Matsuda, M.,Okamura-Ikeda, K.,Motokawa, Y.,Suzuki, M.,Nakagawa, A.,Taniguchi, H. Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP J.Mol.Biol. 2007 371 222 234 2EK5 17766384 Crystal structure of the transcriptional factor from C.glutamicum at 2.2 angstrom resolution 2007-03-22 2007-09-18 Gao, Y.G.,Yao, M.,Itou, H.,Zhou, Y.,Tanaka, I. The structures of transcription factor CGL2947 from Corynebacterium glutamicum in two crystal forms: A novel homodimer assembling and the implication for effector-binding mode Protein Sci. 2007 16 1878 1886 2E7P 17460036 Crystal structure of the holo form of glutaredoxin C1 from populus tremula x tremuloides 2007-01-12 2007-09-25 Rouhier, N.,Unno, H.,Bandyopadhyay, S.,Masip, L.,Kim, S.K.,Hirasawa, M.,Gualberto, J.M.,Lattard, V.,Kusunoki, M.,Knaff, D.B.,Georgiou, G.,Hase, T.,Johnson, M.K.,Jacquot, J.P. Functional, structural, and spectroscopic characterization of a glutathione-ligated [2Fe-2S] cluster in poplar glutaredoxin C1 Proc.Natl.Acad.Sci.Usa 2007 104 7379 7384 2Z6O 17825256 Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 2007-08-06 2007-09-25 Mizushima, T.,Tatsumi, K.,Ozaki, Y.,Kawakami, T.,Suzuki, A.,Ogasahara, K.,Komatsu, M.,Kominami, E.,Tanaka, K.,Yamane, T. Crystal structure of Ufc1, the Ufm1-conjugating enzyme Biochem.Biophys.Res.Commun. 2007 362 1079 1084 2Z6P 17825256 Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 2007-08-06 2007-09-25 Mizushima, T.,Tatsumi, K.,Ozaki, Y.,Kawakami, T.,Suzuki, A.,Ogasahara, K.,Komatsu, M.,Kominami, E.,Tanaka, K.,Yamane, T. Crystal structure of Ufc1, the Ufm1-conjugating enzyme Biochem.Biophys.Res.Commun. 2007 362 1079 1084 2YXF 17646174 The high resolution crystal structure of beta2-microglobulin under physiological conditions 2007-04-26 2007-10-30 Iwata, K.,Matsuura, T.,Sakurai, K.,Nakagawa, A.,Goto, Y. High-resolution Crystal Structure of {beta}2-Microglobulin Formed at pH 7.0 J.Biochem.(Tokyo) 2007 142 413 419 2Z48 17977832 Crystal Structure of Hemolytic Lectin CEL-III Complexed with GalNac 2007-06-13 2007-10-30 Hatakeyama, T.,Unno, H.,Kouzuma, Y.,Uchida, T.,Eto, S.,Hidemura, H.,Kato, N.,Yonekura, M.,Kusunoki, M. C-type lectin-like carbohydrate-recognition of the hemolytic lectin CEL-III containing ricin-type beta-trefoil folds J.Biol.Chem. 2007 282 37826 37835 2Z49 17977832 Crystal Structure of Hemolytic Lectin CEL-III Complexed with methyl-alpha-D-galactopylanoside 2007-06-13 2007-10-30 Hatakeyama, T.,Unno, H.,Kouzuma, Y.,Uchida, T.,Eto, S.,Hidemura, H.,Kato, N.,Yonekura, M.,Kusunoki, M. 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Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo) 2007 142 507 516 2E2T Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with phenylhydrazine 2006-11-17 2007-11-20 Murakawa, T.,Okajima, T.,Taki, M.,Yamamoto, Y.,Kuroda, S.,Hayashi, H.,Tanizawa, K. Catalytic Regulation Conducted by the Substrate Schiff Base and Conserved Aspartic Acid Residue in Bacterial Copper Amine Oxidase Reaction To be Published 0 0 0 0 2E2U Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with 4-hydroxybenzylhydrazine 2006-11-17 2007-11-20 Murakawa, T.,Okajima, T.,Taki, M.,Yamamoto, Y.,Kuroda, S.,Hayashi, H.,Tanizawa, K. 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Structural insight into the specific interaction between murine SHPS-1/SIRP alpha and its ligand CD47 J.Mol.Biol. 2008 375 650 660 2Z56 17988685 Crystal structure of G56S-propeptide:S324A-subtilisin complex 2007-06-29 2008-01-01 Pulido, M.A.,Tanaka, S.,Sringiew, C.,You, D.J.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol. 2007 374 1359 1373 2Z58 17988685 Crystal structure of G56W-propeptide:S324A-subtilisin complex 2007-06-29 2008-01-01 Pulido, M.A.,Tanaka, S.,Sringiew, C.,You, D.J.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol. 2007 374 1359 1373 2ZAW 18088124 Crystal Structure of Ferric Cytochrome P450cam Reconstituted with 6-Methyl-6-depropionated Hemin 2007-10-11 2008-01-01 Harada, K.,Sakurai, K.,Ikemura, K.,Ogura, T.,Hirota, S.,Shimada, H.,Hayashi, T. Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam J.Am.Chem.Soc. 2008 130 432 433 2ZAX 18088124 Crystal Structure of Ferric Cytochrome P450cam 2007-10-11 2008-01-01 Harada, K.,Sakurai, K.,Ikemura, K.,Ogura, T.,Hirota, S.,Shimada, H.,Hayashi, T. Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam J.Am.Chem.Soc. 2008 130 432 433 2E6A Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with orotate 2006-12-26 2008-01-15 Inaoka, D.K.,Shimizu, H.,Sakamoto, K.,Shiba, T.,Kurisu, G.,Nara, T.,Aoki, T.,Harada, S.,Kita, K. Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with orotate To be Published 0 0 0 0 2E6D 18808149 Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with fumarate 2006-12-26 2008-01-15 Inaoka, D.K.,Sakamoto, K.,Shimizu, H.,Shiba, T.,Kurisu, G.,Nara, T.,Aoki, T.,Kita, K.,Harada, S. 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Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol. 2008 15 228 236 2Z5B 18278057 Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly 2007-07-03 2008-01-22 Yashiroda, H.,Mizushima, T.,Okamoto, K.,Kameyama, T.,Hayashi, H.,Kishimoto, T.,Niwa, S.,Kasahara, M.,Kurimoto, E.,Sakata, E.,Takagi, K.,Suzuki, A.,Hirano, Y.,Murata, S.,Kato, K.,Yamane, T.,Tanaka, K. Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol. 2008 15 228 236 2Z5C 18278057 Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly 2007-07-03 2008-01-22 Yashiroda, H.,Mizushima, T.,Okamoto, K.,Kameyama, T.,Hayashi, H.,Kishimoto, T.,Niwa, S.,Kasahara, M.,Kurimoto, E.,Sakata, E.,Takagi, K.,Suzuki, A.,Hirano, Y.,Murata, S.,Kato, K.,Yamane, T.,Tanaka, K. Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol. 2008 15 228 236 2E9B Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with maltose 2007-01-24 2008-02-19 Malle, D.,Iwamoto, H.,Katsuya, Y.,Utsumi, S.,Mikami, B. Crystal structure of pullulanase type I from Bacillus subtilis str. 168 in complex with maltose and alpha-cyclodextrin To be Published 0 0 0 0 2E9Q 20215054 Recombinant pro-11S globulin of pumpkin 2007-01-26 2008-02-26 Tandang-Silvas, M.R.,Fukuda, T.,Fukuda, C.,Prak, K.,Cabanos, C.,Kimura, A.,Itoh, T.,Mikami, B.,Utsumi, S.,Maruyama, N. Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta 2010 0 0 0 2Z83 Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8 2007-08-30 2008-03-04 Yamashita, T.,Unno, H.,Mori, Y.,Tani, H.,Moriishi, K.,Takamizawa, A.,Agoh, M.,Tsukihara, T.,Matsuura, Y. Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8 To be Published 0 0 0 0 2EMS 18614175 Crystal Structure Analysis of the radixin FERM domain complexed with adhesion molecule CD43 2007-03-28 2008-04-01 Takai, Y.,Kitano, K.,Terawaki, S.,Maesaki, R.,Hakoshima, T. Structural basis of the cytoplasmic tail of adhesion molecule CD43 and its binding to ERM proteins J.Mol.Biol. 2008 381 634 644 2Z5X 18391214 Crystal Structure of Human Monoamine Oxidase A with Harmine 2007-07-20 2008-04-01 Son, S.Y.,Ma, J.,Kondou, Y.,Yoshimura, M.,Yamashita, E.,Tsukihara, T. 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Crystal structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon in a dimeric form Febs J. 2008 275 2632 2643 2ZJD 18524774 Crystal Structure of LC3-p62 complex 2008-03-05 2008-06-03 Ichimura, Y.,Kumanomidou, T.,Sou, Y.-S.,Mizushima, T.,Ezaki, J.,Ueno, T.,Kominami, E.,Yamane, T.,Tanaka, K.,Komatsu, M. Structural Basis for Sorting Mechanism of p62 in Selective Autophagy J.Biol.Chem. 2008 283 22847 22857 2Z51 18585737 Crystal structure of Arabidopsis CnfU involved in iron-sulfur cluster biosynthesis 2007-06-26 2008-07-15 Yabe, T.,Yamashita, E.,Kikuchi, A.,Morimoto, K.,Nakagawa, A.,Tsukihara, T.,Nakai, M. Structural Analysis of Arabidopsis CnfU Protein: An Iron-Sulfur Cluster Biosynthetic Scaffold in Chloroplasts. J.Mol.Biol. 2008 0 0 0 2ZL8 18627131 Crystal structure of copper amine oxidase from Arthrobacter globiformis: Substrate Schiff-base intermediate formed with ethylamine 2008-04-03 2008-08-05 Taki, M.,Murakawa, T.,Nakamoto, T.,Uchida, M.,Hayashi, H.,Tanizawa, K.,Yamamoto, Y.,Okajima, T. Further insight into the mechanism of stereoselective proton abstraction by bacterial copper amine oxidase Biochemistry 2008 47 7726 7733 2Z97 19133773 Crystal Structure of Ferric Cytochrome P450cam Reconstituted with 7-Methyl-7-depropionated Hemin 2007-09-18 2008-09-23 Hayashi, T.,Harada, K.,Sakurai, K.,Shimada, H.,Hirota, S. A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site J.Am.Chem.Soc. 2009 131 1398 1400 2ZAH 18097092 X-ray structure of Melon necrotic spot virus 2007-10-05 2008-10-07 Wada, Y.,Tanaka, H.,Yamashita, E.,Kubo, C.,Ichiki-Uehara, T.,Nakazono-Nagaoka, E.,Omura, T.,Tsukihara, T. X-ray structure of Melon necrotic spot virus Acta Crystallogr.,Sect.F 2008 64 8 13 2ZPM Crystal structure analysis of PDZ domain B 2008-07-17 2008-10-21 Inaba, K.,Suzuki, M.,Maegawa, K.,Akiyama, Y. Crystal Structure analysis of PDZ-domain B To be Published 0 0 0 0 2VFD 19622869 Crystal structure of the F96S mutant of Plasmodium falciparum triosephosphate isomerase 2007-11-03 2008-12-09 Gayathri, P.,Banerjee, M.,Vijayalakshmi, A.,Balaram, H.,Balaram, P.,Murthy, M.R.N. Biochemical and Structural Characterization of Residue 96 Mutants of Plasmodium Falciparum Triosephosphate Isomerase: Active-Site Loop Conformation, Hydration and Identification of a Dimer-Interface Ligand-Binding Site. Acta Crystallogr.,Sect.D 2009 65 847 0 2ZPK 18787202 Crystal structure of P20.1 Fab fragment in complex with its antigen peptide 2008-07-16 2008-12-23 Nogi, T.,Sangawa, T.,Tabata, S.,Nagae, M.,Tamura-Kawakami, K.,Beppu, A.,Hattori, M.,Yasui, N.,Takagi, J. Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification Protein Sci. 2008 17 2120 2126 3EF4 19153470 Crystal structure of native pseudoazurin from Hyphomicrobium denitrificans 2008-09-08 2008-12-30 Hira, D.,Nojiri, M.,Suzuki, S. Atomic resolution structure of pseudoazurin from the methylotrophic denitrifying bacterium Hyphomicrobium denitrificans: structural insights into its spectroscopic properties Acta Crystallogr.,Sect.D 2009 65 85 92 2ZXJ Crystal structure of YycF DNA-binding domain from Staphylococcus aureus 2008-12-26 2009-01-20 Doi, A.,Okajima, T.,Gotoh, Y.,Tanizawa, K.,Utsumi, R. Novel Antibiotics Target Protein of Gram-positive Pathogens: X-ray Crystal Structures and Search of Potential Drug-Binding Sites To be Published 0 0 0 0 2ZUK 19146406 The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam (different binding mode) 2008-10-18 2009-02-17 Okazaki, S.,Suzuki, A.,Mizushima, T.,Kawano, T.,Komeda, H.,Asano, Y.,Yamane, T. The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae Biochemistry 2009 48 941 950 2ZWU 19193991 Crystal Structure of Camphor Soaked Ferric Cytochrome P450cam 2008-12-18 2009-02-17 Sakurai, K.,Shimada, H.,Hayashi, T.,Tsukihara, T. Substrate binding induces structural changes in cytochrome P450cam Acta Crystallogr.,Sect.F 2009 65 80 83 2ZYP X-ray structure of hen egg-white lysozyme with poly(allyl amine) 2009-01-27 2009-02-17 Ito, L.,Tomita, S.,Yamaguchi, H.,Shiraki, K. 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Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB Embo J. 2009 28 779 791 2ZUQ 19214188 Crystal structure of DsbB-Fab complex 2008-10-28 2009-04-14 Inaba, K.,Murakami, S.,Nakagawa, A.,Iida, H.,Kinjo, M.,Ito, K.,Suzuki, M. Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB Embo J. 2009 28 779 791 2ZON 19890332 Crystal structure of electron transfer complex of nitrite reductase with cytochrome c 2008-05-27 2009-06-09 Nojiri, M.,Koteishi, H.,Nakagami, T.,Kobayashi, K.,Inoue, T.,Yamaguchi, K.,Suzuki, S. Structural basis of inter-protein electron transfer for nitrite reduction in denitrification Nature 2009 462 117 120 2ZOO Crystal structure of nitrite reductase from Pseudoalteromonas haloplanktis TAC125 2008-05-27 2009-06-09 Nojiri, M.,Koteishi, H.,Tsuda, A.,Nakagami, T.,Kobayashi, K.,Inoue, T.,Yamaguchi, K.,Suzuki, S. Electron transfer processes within and between proteins containing the HEME C and blue Cu To be Published 0 0 0 0 2ZQB 19120449 Crystal structure of a psychrotrophic RNaseHI variant with sextuple thermostabilizing mutations 2008-08-07 2009-06-23 Rohman, M.S.,Tadokoro, T.,Angkawidjaja, C.,Abe, Y.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Destabilization of psychrotrophic RNase HI in a localized fashion as revealed by mutational and X-ray crystallographic analyses Febs J. 2009 276 603 613 2ZWM Crystal structure of YycF receiver domain from Bacillus subtilis 2008-12-16 2009-07-14 Doi, A.,Okajima, T.,Gotoh, Y.,Tanizawa, K.,Utsumi, R. Novel Antibiotics Target Protein of Gram-positive Pathogens: X-ray Crystal Structures and Search of Potential Drug-Binding sites To be Published 0 0 0 0 3DXW 19146406 The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam 2008-07-25 2009-07-28 Okazaki, S.,Suzuki, A.,Mizushima, T.,Kawano, T.,Komeda, H.,Asano, Y.,Yamane, T. The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae Biochemistry 2009 48 941 950 3A3O 19766655 Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the five C-terminal residues 2009-06-15 2009-08-18 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin J.Mol.Biol. 2009 394 306 319 2ZVI 19690372 Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis 2008-11-07 2009-09-01 Tamura, H.,Saito, Y.,Ashida, H.,Kai, Y.,Inoue, T.,Yokota, A.,Matsumura, H. Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis Acta Crystallogr.,Sect.D 2009 65 942 951 2ZUJ Crystal Structure of Camphor-soaked Ferric Cytochrome P450cam Mutant(D297L) 2008-10-18 2009-10-20 Sakurai, K.,Harada, K.,Shimada, H.,Shimokata, K.,Hayashi, T.,Tsukihara, T. Crystal Structure of Camphor-soaked Ferric Cytochrome P450cam Mutant to be published 0 0 0 0 3A2W 19819903 Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form) 2009-06-04 2009-10-27 Nakamura, T.,Kado, Y.,Yamaguchi, T.,Matsumura, H.,Ishikawa, K.,Inoue, T. Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem. 2010 147 109 115 3A5W 19819903 Peroxiredoxin (wild type) from Aeropyrum pernix K1 (reduced form) 2009-08-12 2009-10-27 Nakamura, T.,Kado, Y.,Yamaguchi, T.,Matsumura, H.,Ishikawa, K.,Inoue, T. Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem. 2010 147 109 115 3A6S 19864691 Crystal structure of the MutT protein 2009-09-09 2009-10-27 Nakamura, T.,Meshitsuka, S.,Kitagawa, S.,Abe, N.,Yamada, J.,Ishino, T.,Nakano, H.,Tsuzuki, T.,Doi, T.,Kobayashi, Y.,Fujii, S.,Sekiguchi, M.,Yamagata, Y. Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem. 2010 285 444 452 2ZUN Functional Analysis of Hyperthermophilic Endocellulase from the Archaeon Pyrococcus horikoshii 2008-10-21 2009-11-03 Kim, H.-W.,Ishikawa, K. Functional Analysis of Hyperthermophilic Endocellulase from the Archaeon Pyrococcus horikoshii To be Published 0 0 0 0 3A7S 19836345 Catalytic domain of UCH37 2009-10-04 2009-11-03 Nishio, K.,Kim, S.W.,Kawai, K.,Mizushima, T.,Yamane, T.,Hamazaki, J.,Murata, S.,Tanaka, K.,Morimoto, Y. Crystal structure of the de-ubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain Biochem.Biophys.Res.Commun. 2009 0 0 0 3A7S 19836345 Catalytic domain of UCH37 2009-10-04 2009-11-03 Nishio, K.,Kim, S.W.,Kawai, K.,Mizushima, T.,Yamane, T.,Hamazaki, J.,Murata, S.,Tanaka, K.,Morimoto, Y. Crystal structure of the de-ubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain Biochem.Biophys.Res.Commun. 2009 0 0 0 2ZVD 20438738 Crystal structure of Pseudomonas sp. MIS38 lipase in an open conformation 2008-11-05 2009-11-10 Angkawidjaja, C.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids J.Mol.Biol. 2010 0 0 0 3A68 20007325 Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin 2009-08-26 2009-12-08 Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem. 2010 285 4049 4059 3A6P 19965479 Crystal structure of Exportin-5:RanGTP:pre-miRNA complex 2009-09-07 2009-12-08 Okada, C.,Yamashita, E.,Lee, S.J.,Shibata, S.,Katahira, J.,Nakagawa, A.,Yoneda, Y.,Tsukihara, T. A high-resolution structure of the pre-microRNA nuclear export machinery Science 2009 326 1275 1279 3A9Q 20007325 Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4 2009-11-05 2009-12-08 Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem. 2010 285 4049 4059 3AAG 20007322 Crystal structure of C. jejuni pglb C-terminal domain 2009-11-16 2009-12-08 Maita, N.,Nyirenda, J.,Igura, M.,Kamishikiryo, J.,Kohda, D. Comparative structural biology of Eubacterial and Archaeal oligosaccharyltransferases. J.Biol.Chem. 2010 285 4941 4950 3A7A 20089862 Crystal structure of E. coli lipoate-protein ligase A in complex with octyl-amp and apoH-protein 2009-09-20 2010-01-19 Fujiwara, K.,Maita, N.,Hosaka, H.,Okamura-Ikeda, K.,Nakagawa, A.,Taniguchi, H. Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A. J.Biol.Chem. 2010 285 9971 9980 3A7L 20089862 Crystal structure of E. coli apoH-protein 2009-09-28 2010-01-19 Fujiwara, K.,Maita, N.,Hosaka, H.,Okamura-Ikeda, K.,Nakagawa, A.,Taniguchi, H. Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A. J.Biol.Chem. 2010 285 9971 9980 3A7U 20089862 Crystal structure of the bovine lipoyltransferase in its unliganded form 2009-10-05 2010-01-19 Fujiwara, K.,Maita, N.,Hosaka, H.,Okamura-Ikeda, K.,Nakagawa, A.,Taniguchi, H. Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A. J.Biol.Chem. 2010 285 9971 9980 3ABL 19164527 Bovine heart cytochrome c oxidase at the fully oxidized state (15-s X-ray exposure dataset) 2009-12-16 2010-01-19 Aoyama, H.,Muramoto, K.,Shinzawa-Itoh, K.,Hirata, K.,Yamashita, E.,Tsukihara, T.,Ogura, T.,Yoshikawa, S. A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump Proc.Natl.Acad.Sci.USA 2009 106 2165 2169 3ABM 19164527 Bovine heart cytochrome c oxidase at the fully oxidized state (200-s X-ray exposure dataset) 2009-12-16 2010-01-19 Aoyama, H.,Muramoto, K.,Shinzawa-Itoh, K.,Hirata, K.,Yamashita, E.,Tsukihara, T.,Ogura, T.,Yoshikawa, S. A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump Proc.Natl.Acad.Sci.USA 2009 106 2165 2169 3AAF 20159463 Structure of WRN RQC domain bound to double-stranded DNA 2009-11-16 2010-02-16 Kitano, K.,Kim, S.Y.,Hakoshima, T. Structural basis for DNA strand separation by the unconventional winged-helix domain of RecQ helicase WRN Structure 2010 18 177 187 3A0M 21442606 Structure of (PPG)4-OVG-(PPG)4, monoclinic, twinned crystal 2009-03-21 2010-03-02 Okuyama, K.,Miyama, K.,Morimoto, T.,Masakiyo, K.,Mizuno, K.,Bachinger, H.P. Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence. Biopolymers 2011 95 628 640 2ZZQ Crystal structure analysis of the HEV capsid protein, PORF2 2009-02-23 2010-03-09 Miyazaki, N.,Xing, L.,Wang, C.-Y.,Li, T.-C.,Takeda, N.,Higashiura, A.,Nakagawa, A.,Tsukihara, T.,Miyamura, T.,Cheng, R.H. Role of protein domain-modularity in designating capsid assembly and antigenicity To be Published 0 0 0 0 3ABK 20208153 Bovine heart cytochrome c oxidase at the NO-bound fully reduced state (50K) 2009-12-16 2010-03-09 Ohta, K.,Muramoto, K.,Shinzawa-Itoh, K.,Yamashita, E.,Yoshikawa, S.,Tsukihara, T. X-ray structure of the NO-bound Cu(B) in bovine cytochrome c oxidase Acta Crystallogr.,Sect.F 2010 66 251 253 3ACP 20236927 Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome 2010-01-08 2010-03-16 Kim, S.,Saeki, Y.,Fukunaga, K.,Suzuki, A.,Takagi, K.,Yamane, T.,Tanaka, K.,Mizushima, T.,Kato, K. Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome J.Biol.Chem. 2010 285 15159 15166 3ACP 20236927 Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome 2010-01-08 2010-03-16 Kim, S.,Saeki, Y.,Fukunaga, K.,Suzuki, A.,Takagi, K.,Yamane, T.,Tanaka, K.,Mizushima, T.,Kato, K. Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome J.Biol.Chem. 2010 285 15159 15166 3A7Q 20223215 Structural basis for specific recognition of reelin by its receptors 2009-10-01 2010-03-23 Yasui, N.,Nogi, T.,Takagi, J. Structural Basis for Specific Recognition of Reelin by Its Receptors Structure 2010 18 320 331 3A8I 20375021 Crystal Structure of ET-EHred-5-CH3-THF complex 2009-10-06 2010-04-07 Okamura-Ikeda, K.,Hosaka, H.,Maita, N.,Fujiwara, K.,Yoshizawa, A.C.,Nakagawa, A.,Taniguchi, H. Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism J.Biol.Chem. 2010 285 18684 18692 3A8J 20375021 Crystal Structure of ET-EHred complex 2009-10-06 2010-04-07 Okamura-Ikeda, K.,Hosaka, H.,Maita, N.,Fujiwara, K.,Yoshizawa, A.C.,Nakagawa, A.,Taniguchi, H. Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism J.Biol.Chem. 2010 285 18684 18692 3A8K 20375021 Crystal Structure of ETD97N-EHred complex 2009-10-06 2010-04-07 Okamura-Ikeda, K.,Hosaka, H.,Maita, N.,Fujiwara, K.,Yoshizawa, A.C.,Nakagawa, A.,Taniguchi, H. Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism J.Biol.Chem. 2010 285 18684 18692 3AB9 20375021 Crystal Structure of lipoylated E. coli H-protein (reduced form) 2009-12-04 2010-04-07 Okamura-Ikeda, K.,Hosaka, H.,Maita, N.,Fujiwara, K.,Yoshizawa, A.C.,Nakagawa, A.,Taniguchi, H. Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism J.Biol.Chem. 2010 285 18684 18692 3AG1 20385840 Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 280 K 2010-03-19 2010-04-28 Muramoto, K.,Ohta, K.,Shinzawa-Itoh, K.,Kanda, K.,Taniguchi, M.,Nabekura, H.,Yamashita, E.,Tsukihara, T.,Yoshikawa, S. Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate Proc.Natl.Acad.Sci.USA 2010 107 7740 7745 3AG2 20385840 Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 100 K 2010-03-19 2010-04-28 Muramoto, K.,Ohta, K.,Shinzawa-Itoh, K.,Kanda, K.,Taniguchi, M.,Nabekura, H.,Yamashita, E.,Tsukihara, T.,Yoshikawa, S. Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate Proc.Natl.Acad.Sci.USA 2010 107 7740 7745 3AG3 20385840 Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-bound Fully Reduced State at 100 K 2010-03-19 2010-04-28 Muramoto, K.,Ohta, K.,Shinzawa-Itoh, K.,Kanda, K.,Taniguchi, M.,Nabekura, H.,Yamashita, E.,Tsukihara, T.,Yoshikawa, S. Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate Proc.Natl.Acad.Sci.USA 2010 107 7740 7745 3AG4 20385840 Bovine Heart Cytochrome c Oxidase in the Cyanide Ion-bound Fully Reduced State at 100 K 2010-03-19 2010-04-28 Muramoto, K.,Ohta, K.,Shinzawa-Itoh, K.,Kanda, K.,Taniguchi, M.,Nabekura, H.,Yamashita, E.,Tsukihara, T.,Yoshikawa, S. Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate Proc.Natl.Acad.Sci.USA 2010 107 7740 7745 3A6Z 20438738 Crystal structure of Pseudomonas sp. MIS38 lipase (PML) in the open conformation following dialysis against Ca-free buffer 2009-09-10 2010-05-26 Angkawidjaja, C.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids J.Mol.Biol. 2010 0 0 0 3A4W 20553502 Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides 2009-07-22 2010-06-09 Tsuji, H.,Nishimura, S.,Inui, T.,Kado, Y.,Ishikawa, K.,Nakamura, T.,Uegaki, K. Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus- the role of conserved residues in the active site Febs J. 2010 277 2683 2695 3A4X 20553502 Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides 2009-07-22 2010-06-09 Tsuji, H.,Nishimura, S.,Inui, T.,Kado, Y.,Ishikawa, K.,Nakamura, T.,Uegaki, K. Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus- the role of conserved residues in the active site Febs J. 2010 277 2683 2695 3AFB 20553502 Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus 2010-02-25 2010-06-09 Tsuji, H.,Nishimura, S.,Inui, T.,Kado, Y.,Ishikawa, K.,Nakamura, T.,Uegaki, K. Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus- the role of conserved residues in the active site Febs J. 2010 277 2683 2695 3A4A 20812985 Crystal structure of isomaltase from Saccharomyces cerevisiae 2009-07-01 2010-07-14 Yamamoto, K.,Miyake, H.,Kusunoki, M.,Osaki, S. Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose Febs J. 2010 277 4205 4214 3AG5 20568730 Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus 2010-03-19 2010-07-21 Satoh, A.,Konishi, S.,Tamura, H.,Stickland, H.G.,Whitney, H.M.,Smith, A.G.,Matsumura, H.,Inoue, T. Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus. Biochemistry 2010 49 6400 6410 3A5E 20198681 Crystal structure of 5K RNase Sa 2009-08-06 2010-08-04 Nick Pace, C.,Huyghues-Despointes, B.M.,Fu, H.,Takano, K.,Scholtz, J.M.,Grimsley, G.R. Urea denatured state ensembles contain extensive secondary structure that is increased in hydrophobic proteins Protein Sci. 2010 19 929 943 3AFG 20595040 Crystal structure of ProN-Tk-SP from Thermococcus kodakaraensis 2010-03-01 2010-08-04 Foophow, T.,Tanaka, S.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of a subtilisin homologue, Tk-SP, from Thermococcus kodakaraensis: requirement of a C-terminal beta-jelly roll domain for hyperstability. J.Mol.Biol. 2010 400 865 877 3AA2 20423323 A52I E. coli RNase HI 2009-11-11 2010-10-06 Tanaka, M.,Chon, H.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI Protein Pept.Lett. 2010 17 1163 1169 3AA3 20423323 A52L E. coli RNase HI 2009-11-11 2010-10-06 Tanaka, M.,Chon, H.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI Protein Pept.Lett. 2010 17 1163 1169 3AA4 20423323 A52V E.coli RNase HI 2009-11-11 2010-10-06 Tanaka, M.,Chon, H.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI Protein Pept.Lett. 2010 17 1163 1169 3AA5 20423323 A52F E.coli RNase HI 2009-11-11 2010-10-06 Tanaka, M.,Chon, H.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI Protein Pept.Lett. 2010 17 1163 1169 3AB5 Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae 2009-12-01 2010-11-17 Morimoto, Y.,Imai, T.,Ozawa, Y. Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae at 1.18A resolution. To be Published 0 0 0 0 3AEX 21084312 Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8 2010-02-13 2010-11-17 Murakawa, T.,Machida, Y.,Hayashi, H. Product-assisted catalysis as the basis of the reaction specificity of threonine synthase. J.Biol.Chem. 2011 286 2774 2784 3AEY 21084312 Apo form of threonine synthase from Thermus thermophilus HB8 2010-02-17 2010-11-17 Murakawa, T.,Machida, Y.,Hayashi, H. Product-assisted catalysis as the basis of the reaction specificity of threonine synthase. J.Biol.Chem. 2011 286 2774 2784 3AHQ 20834232 hyperactive human Ero1 2010-04-26 2010-12-22 Inaba, K.,Masui, S.,Iida, H.,Vavassori, S.,Sitia, R.,Suzuki, M. Crystal structures of human Ero1-alpha reveal the mechanisms of regulated and targeted oxidation of PDI Embo J. 2010 29 3330 3343 3AHR 20834232 Inactive human Ero1 2010-04-26 2010-12-22 Inaba, K.,Masui, S.,Iida, H.,Vavassori, S.,Sitia, R.,Suzuki, M. Crystal structures of human Ero1-alpha reveal the mechanisms of regulated and targeted oxidation of PDI Embo J. 2010 29 3330 3343 3L85 21768126 Crystal structure of human NUDT5 complexed with 8-oxo-dGMP 2009-12-29 2011-01-12 Arimori, T.,Tamaoki, H.,Nakamura, T.,Kamiya, H.,Ikemizu, S.,Takagi, Y.,Ishibashi, T.,Harashima, H.,Sekiguchi, M.,Yamagata, Y. Diverse substrate recognition and hydrolysis mechanisms of human NUDT5 Nucleic Acids Res. 2011 39 8972 8983 3ADM 21442606 Crystal structure of (Pro-Pro-Gly)4-Hyp-Ser-Gly-(Pro-Pro-Gly)4 2010-01-22 2011-01-19 Okuyama, K.,Miyama, K.,Morimoto, T.,Masakiyo, K.,Mizuno, K.,Bachinger, H.P. Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence. Biopolymers 2011 95 628 640 3AK1 21182595 Superoxide dismutase from Aeropyrum pernix K1, apo-form 2010-06-30 2011-02-02 Nakamura, T.,Torikai, K.,Uegaki, K.,Morita, J.,Machida, K.,Suzuki, A.,Kawata, Y. Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability Febs J. 2011 278 598 609 3AK2 21182595 Superoxide dismutase from Aeropyrum pernix K1, Mn-bound form 2010-06-30 2011-02-02 Nakamura, T.,Torikai, K.,Uegaki, K.,Morita, J.,Machida, K.,Suzuki, A.,Kawata, Y. Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability Febs J. 2011 278 598 609 3AK3 21182595 Superoxide dismutase from Aeropyrum pernix K1, Fe-bound form 2010-06-30 2011-02-02 Nakamura, T.,Torikai, K.,Uegaki, K.,Morita, J.,Machida, K.,Suzuki, A.,Kawata, Y. Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability Febs J. 2011 278 598 609 3AE8 Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Isopropoxy-phenyl)-2-trifluoromethylbenzamide 2010-02-04 2011-02-09 Harada, S.,Sasaki, T.,Shindo, M.,Kido, Y.,Inaoka, D.K.,Omori, J.,Osanai, A.,Sakamoto, K.,Mao, J.,Matsuoka, S.,Inoue, M.,Honma, T.,Tanaka, A.,Kita, K. Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Isopropoxy-phenyl)-2-trifluoromethylbenzamide To be Published 0 0 0 0 3AEG Crystal structure of porcine heart mitochondrial complex II bound with N-Biphenyl-3-yl-2-iodo-benzamide 2010-02-04 2011-02-09 Harada, S.,Sasaki, T.,Shindo, M.,Kido, Y.,Inaoka, D.K.,Omori, J.,Osanai, A.,Sakamoto, K.,Mao, J.,Matsuoka, S.,Inoue, M.,Honma, T.,Tanaka, A.,Kita, K. Crystal structure of porcine heart mitochondrial complex II bound with N-Biphenyl-3-yl-2-iodo-benzamide To be Published 0 0 0 0 3AEP Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing alpha-amino-alpha, beta-butenoic acid-pyridoxal-5'-phosphate 2010-02-10 2011-02-09 Karaki, T.,Sato, D.,Shimizu, A.,Nozaki, T.,Harada, S. Crystal structure of Entamoeba histolytica methionine gamma-lyase 1 To be Published 0 0 0 0 3ALP 21325282 Cell adhesion protein 2010-08-05 2011-02-16 Narita, H.,Yamamoto, Y.,Suzuki, M.,Miyazaki, N.,Yoshida, A.,Kawai, K.,Iwasaki, K.,Nakagawa, A.,Takai, Y.,Sakisaka, T. Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions J.Biol.Chem. 2011 286 12659 12669 3ALP 21325282 Cell adhesion protein 2010-08-05 2011-02-16 Narita, H.,Yamamoto, Y.,Suzuki, M.,Miyazaki, N.,Yoshida, A.,Kawai, K.,Iwasaki, K.,Nakagawa, A.,Takai, Y.,Sakisaka, T. 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Binding modes of zaragozic acid A to human squalene synthase and staphylococcal dehydrosqualene synthase J.Biol.Chem. 2012 287 18750 18757 3VJE 22474324 Crystal structure of the Y248A mutant of C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus in complex with zaragozic acid A 2011-10-14 2012-04-11 Liu, C.I.,Jeng, W.Y.,Chang, W.J.,Ko, T.P.,Wang, A.H.J. Binding modes of zaragozic acid A to human squalene synthase and staphylococcal dehydrosqualene synthase J.Biol.Chem. 2012 287 18750 18757 3VMM 22407814 Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis 2011-12-14 2012-04-11 Shomura, Y.,Hinokuchi, E.,Ikeda, H.,Senoo, A.,Takahashi, Y.,Saito, J.,Komori, H.,Shibata, N.,Yonetani, Y.,Higuchi, Y. Structural and enzymatic characterization of BacD, an l-amino acid dipeptide ligase from Bacillus subtilis Protein Sci. 2012 0 0 0 3VI5 22418579 Human hematopoietic prostaglandin D synthase inhibitor complex structures 2011-09-21 2012-04-18 Kado, Y.,Aritake, K.,Uodome, N.,Okano, Y.,Okazaki, N.,Matsumura, H.,Urade, Y.,Inoue, T. Human hematopoietic prostaglandin D synthase inhibitor complex structures J.Biochem. 2012 151 447 455 3VMT 22493270 Crystal structure of Staphylococcus aureus membrane-bound transglycosylase in complex with a Lipid II analog 2011-12-15 2012-04-18 Huang, C.Y.,Shih, H.W.,Lin, L.Y.,Tien, Y.W.,Cheng, T.J.R.,Cheng, W.C.,Wong, C.H.,Ma, C. 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Biopolymers 2012 97 607 616 3VMX 22569364 Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel 2011-12-19 2012-05-30 Fujiwara, Y.,Kurokawa, T.,Takeshita, K.,Kobayashi, M.,Okochi, Y.,Nakagawa, A.,Okamura, Y. The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1 Nat Commun 2012 3 816 816 3B2F 22427434 Maize Ferredoxin 1 2011-08-01 2012-06-13 Sakakibara, Y.,Kimura, H.,Iwamura, A.,Saitoh, T.,Ikegami, T.,Kurisu, G.,Hase, T. A new structural insight into differential interaction of cyanobacterial and plant ferredoxins with nitrite reductase as revealed by NMR and X-ray crystallographic studies J.Biochem. 2012 151 483 492 3B0Z 23633590 Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium 2011-06-17 2012-06-20 Meshcheryakov, V.A.,Kitao, A.,Matsunami, H.,Samatey, F.A. Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins Acta Crystallogr.,Sect.D 2013 69 812 820 3B0Z 23633590 Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium 2011-06-17 2012-06-20 Meshcheryakov, V.A.,Kitao, A.,Matsunami, H.,Samatey, F.A. Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins Acta Crystallogr.,Sect.D 2013 69 812 820 3RED 3.0 A structure of the Prunus mume hydroxynitrile lyase isozyme-1 2011-04-04 2012-06-20 Cielo, C.B.C.,Yamane, T.,Asano, Y.,Watanabe, N.,Suzuki, A.,Fukuta, Y. Crystal Structure of a native FAD-dependent Hydroxynitrile Lyase derived from the Japanese apricot, Prunus mume To be Published 0 0 0 0 3VGP 22559858 Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from Archaeoglobus fulgidus 2011-08-18 2012-07-04 Matsumoto, S.,Igura, M.,Nyirenda, J.,Matsumoto, M.,Yuzawa, S.,Noda, N.N.,Inagaki, F.,Kohda, D. Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 A Resolution Biochemistry 2012 51 4157 4166 3VIJ 22751668 Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with glucose 2011-10-03 2012-07-04 Jeng, W.Y.,Wang, N.C.,Lin, C.T.,Chang, W.J.,Liu, C.I.,Wang, A.H.J. High-resolution structures of Neotermes koshunensis beta-glucosidase mutants provide insights into the catalytic mechanism and the synthesis of glucoconjugates Acta Crystallogr.,Sect.D 2012 68 829 838 3VIO 22751668 Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with a new glucopyranosidic product 2011-10-03 2012-07-04 Jeng, W.Y.,Wang, N.C.,Lin, C.T.,Chang, W.J.,Liu, C.I.,Wang, A.H.J. High-resolution structures of Neotermes koshunensis beta-glucosidase mutants provide insights into the catalytic mechanism and the synthesis of glucoconjugates Acta Crystallogr.,Sect.D 2012 68 829 838 3VTH 22740694 Crystal structure of full-length HypF in the phosphate- and nucleotide-bound form 2012-05-30 2012-07-04 Shomura, Y.,Higuchi, Y. Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases J.Biol.Chem. 2012 287 28409 28419 3VTI 22740694 Crystal structure of HypE-HypF complex 2012-05-30 2012-07-04 Shomura, Y.,Higuchi, Y. Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases J.Biol.Chem. 2012 287 28409 28419 3B1S 23633590 Crystal structure of the cytoplasmic domain of FlhB from Aquifex aeolicus 2011-07-08 2012-07-11 Meshcheryakov, V.A.,Kitao, A.,Matsunami, H.,Samatey, F.A. Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins Acta Crystallogr.,Sect.D 2013 69 812 820 3B1S 23633590 Crystal structure of the cytoplasmic domain of FlhB from Aquifex aeolicus 2011-07-08 2012-07-11 Meshcheryakov, V.A.,Kitao, A.,Matsunami, H.,Samatey, F.A. Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins Acta Crystallogr.,Sect.D 2013 69 812 820 3V9Z 22718982 Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site 2011-12-28 2012-07-11 Hsiao, Y.-Y.,Duh, Y.,Chen, Y.P.,Wang, Y.T.,Yuan, H.S. How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res. 2012 40 8144 8154 3VR8 22577165 Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum 2012-04-07 2012-07-11 Shimizu, H.,Osanai, A.,Sakamoto, K.,Inaoka, D.K.,Shiba, T.,Harada, S.,Kita, K. Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum J.Biochem. 2012 151 589 592 4E1O 22767596 Human histidine decarboxylase complex with Histidine methyl ester (HME) 2012-03-06 2012-07-18 Komori, H.,Nitta, Y.,Ueno, H.,Higuchi, Y. Structural study reveals that Ser-354 determines substrate specificity on human histidine decarboxylase J.Biol.Chem. 2012 287 29175 29183 3VHG Recombinant thaumatin I at PH 8.0 2011-08-24 2012-08-29 Masuda, T.,Mikami, B.,Tani, F.,Kitabatake, N. Recombinat thaumatin I at pH 8.0 To be Published 0 0 0 0 3VGI 22569255 The crystal structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus 2011-08-11 2012-09-12 Kim, H.-W.,Kataoka, M.,Ishikawa, K. Atomic resolution of the crystal structure of the hyperthermophilic family 12 endocellulase and stabilizing role of the DxDxDG calcium-binding motif in Pyrococcus furiosus. Febs Lett. 2012 586 1009 1013 3VM9 22885714 Dimeric horse myoglobin 2011-12-09 2012-09-12 Nagao, S.,Osuka, H.,Yamada, T.,Uni, T.,Shomura, Y.,Imai, K.,Higuchi, Y.,Hirota, S. Structural and oxygen binding properties of dimeric horse myoglobin Dalton Trans 2012 41 11378 11385 3VK4 22785484 Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant complexed with L-homocysteine 2011-11-07 2012-09-19 Fukumoto, M.,Kudou, D.,Murano, S.,Shiba, T.,Sato, D.,Tamura, T.,Harada, S.,Inagaki, K. The role of amino acid residues in the active site of L-methionine gamma-lyase from Pseudomonas putida. Biosci.Biotechnol.Biochem. 2012 76 1275 1284 3VSK 22846910 Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the apo form. 2012-04-25 2012-10-31 Yoshida, H.,Kawai, F.,Obayashi, E.,Akashi, S.,Roper, D.I.,Tame, J.R.,Park, S.Y. Crystal Structures of Penicillin-Binding Protein 3 (PBP3) from Methicillin-Resistant Staphylococcus aureus in the Apo and Cefotaxime-Bound Forms. J.Mol.Biol. 2012 423 351 364 3VN5 22686566 Crystal structure of Aquifex aeolicus RNase H3 2011-12-22 2012-12-26 Jongruja, N.,You, D.J.,Angkawidjaja, C.,Kanaya, E.,Koga, Y.,Kanaya, S. Structure and characterization of RNase H3 from Aquifex aeolicus Febs J. 2012 279 2737 2753 3VND 24163283 Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2 2012-01-12 2013-01-16 Mitsuya, D.,Tanaka, S.,Matsumura, H.,Urano, N.,Takano, K.,Ogasahara, K.,Takehira, M.,Yutani, K.,Ishida, M. Strategy for cold adaptation of the tryptophan synthase alpha subunit from the psychrophile Shewanella frigidimarina K14-2: crystal structure and physicochemical properties J.Biochem. 2014 155 73 82 4G8D 23275166 Crystal structures of N-acyl homoserine lactonase AidH S102G mutant 2012-07-23 2013-01-16 Gao, A.,Mei, G.Y.,Liu, S.,Wang, P.,Tang, Q.,Liu, Y.P.,Wen, H.,An, X.M.,Zhang, L.Q.,Yan, X.X.,Liang, D.C. High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism for N-acyl homoserine lactonase Acta Crystallogr.,Sect.D 2013 69 82 91 4G9G 23275166 Crystal structures of N-acyl homoserine lactonase AidH E219G mutant 2012-07-23 2013-01-16 Gao, A.,Mei, G.Y.,Liu, S.,Wang, P.,Tang, Q.,Liu, Y.P.,Wen, H.,An, X.M.,Zhang, L.Q.,Yan, X.X.,Liang, D.C. High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism for N-acyl homoserine lactonase Acta Crystallogr.,Sect.D 2013 69 82 91 3VMY Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT) 2011-12-19 2013-01-30 Fujiwara, Y.,Takeshita, K.,Kobayashi, M.,Okamura, Y.,Nakagawa, A. Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Reduction/Dtt) To be Published 0 0 0 0 3VMZ Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (oxidation/H2O2) 2011-12-19 2013-01-30 Fujiwara, Y.,Takeshita, K.,Kobayashi, M.,Okamura, Y.,Nakagawa, A. Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Oxidation/H2O2) To be Published 0 0 0 0 3VN0 Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (mutation/C245S) 2011-12-19 2013-01-30 Fujiwara, Y.,Takeshita, K.,Kobayashi, M.,Okamura, Y.,Nakagawa, A. Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Mutation/C245S) To be Published 0 0 0 0 3VTN 22922659 The crystal structure of the C-terminal domain of Mu phage central spike - Pt derivative for MAD 2012-06-01 2013-02-06 Harada, K.,Yamashita, E.,Nakagawa, A.,Miyafusa, T.,Tsumoto, K.,Ueno, T.,Toyama, Y.,Takeda, S. Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion Biochim.Biophys.Acta 2013 1834 284 291 3VTO 22922659 The crystal structure of the C-terminal domain of Mu phage central spike 2012-06-01 2013-02-06 Harada, K.,Yamashita, E.,Nakagawa, A.,Miyafusa, T.,Tsumoto, K.,Ueno, T.,Toyama, Y.,Takeda, S. Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion Biochim.Biophys.Acta 2013 1834 284 291 4DM1 Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase 2012-02-06 2013-02-13 Kim, H.-W.,Ishikawa, K. Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase To be Published 0 0 0 0 4DM2 Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase 2012-02-06 2013-02-13 Kim, H.-W.,Ishikawa, K. Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase To be Published 0 0 0 0 3VYI 23165764 Crystal Structure of a trimeric coiled-coil (I/I-type) assembly domain from the voltage-gated proton channel mutant 2012-09-25 2013-02-27 Fujiwara, Y.,Kurokawa, T.,Takeshita, K.,Nakagawa, A.,Larsson, H.P.,Okamura, Y. Gating of the designed trimeric/tetrameric voltage-gated H+ channel. J.Physiol.(Paris) 2013 591 627 640 3VPQ 23458683 Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathione 2012-03-08 2013-03-06 Yamamoto, K.,Higashiura, A.,Suzuki, M.,Aritake, K.,Urade, Y.,Uodome, N.,Nakagawa, A. Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity Biochim.Biophys.Acta 2013 1830 3711 3718 3VPT 23458683 Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form 2012-03-13 2013-03-06 Yamamoto, K.,Higashiura, A.,Suzuki, M.,Aritake, K.,Urade, Y.,Uodome, N.,Nakagawa, A. Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity Biochim.Biophys.Acta 2013 1830 3711 3718 3VRN 22888118 Crystal structure of the tyrosine kinase binding domain of Cbl-c 2012-04-13 2013-03-06 Takeshita, K.,Tezuka, T.,Isozaki, Y.,Yamashita, E.,Suzuki, M.,Kim, M.,Yamanashi, Y.,Yamamoto, T.,Nakagawa, A. Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c J.Biochem. 2012 152 487 495 3VRO 22888118 Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-Src peptide 2012-04-13 2013-03-06 Takeshita, K.,Tezuka, T.,Isozaki, Y.,Yamashita, E.,Suzuki, M.,Kim, M.,Yamanashi, Y.,Yamamoto, T.,Nakagawa, A. Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c. J.Biochem. 2012 152 487 495 3VRP 22888118 Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-EGFR peptide 2012-04-13 2013-03-06 Takeshita, K.,Tezuka, T.,Isozaki, Y.,Yamashita, E.,Suzuki, M.,Kim, M.,Yamanashi, Y.,Yamamoto, T.,Nakagawa, A. Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c. 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Accelerated maturation of Tk-subtilisin by a Leu Pro mutation at the C-terminus of the propeptide, which reduces the binding of the propeptide to Tk-subtilisin Febs J. 2013 280 994 1006 4DZA 23118975 Crystal structure of a lysine racemase within internal aldimine linkage 2012-03-01 2013-03-06 Wu, H.M.,Kuan, Y.C.,Chu, C.H.,Hsu, W.H.,Wang, W.C. Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants Plos One 2012 7 0 0 4E19 Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 2012-03-06 2013-03-06 You, D.J.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 To be Published 0 0 0 0 4IL6 23426624 Structure of Sr-substituted photosystem II 2012-12-29 2013-03-06 Koua, F.H.,Umena, Y.,Kawakami, K.,Shen, J.R. Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation Proc.Natl.Acad.Sci.USA 2013 110 3889 3894 3VVA 23487766 Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ascofuranone derivative 2012-07-17 2013-03-13 Shiba, T.,Kido, Y.,Sakamoto, K.,Inaoka, D.K.,Tsuge, C.,Tatsumi, R.,Takahashi, G.,Balogun, E.O.,Nara, T.,Aoki, T.,Honma, T.,Tanaka, A.,Inoue, M.,Matsuoka, S.,Saimoto, H.,Moore, A.L.,Harada, S.,Kita, K. Structure of the trypanosome cyanide-insensitive alternative oxidase Proc.Natl.Acad.Sci.USA 2013 110 4580 4585 3W54 23487766 Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with colletochlorin B 2013-01-21 2013-03-13 Shiba, T.,Kido, Y.,Sakamoto, K.,Inaoka, D.K.,Tsuge, C.,Tatsumi, R.,Takahashi, G.,Balogun, E.O.,Nara, T.,Aoki, T.,Honma, T.,Tanaka, A.,Inoue, M.,Matsuoka, S.,Saimoto, H.,Moore, A.L.,Harada, S.,Kita, K. Structure of the trypanosome cyanide-insensitive alternative oxidase Proc.Natl.Acad.Sci.USA 2013 110 4580 4585 4IBN 23523920 Crystal structure of LC9-RNase H1, a type 1 RNase H with the type 2 active-site motif 2012-12-09 2013-03-20 Nguyen, T.-N.,You, D.-J.,Kanaya, E.,Koga, Y.,Kanaya, S. Crystal structure of metagenome-derived LC9-RNase H1 with atypical DEDN active site motif Febs Lett. 2013 587 1418 1423 4IBN 23523920 Crystal structure of LC9-RNase H1, a type 1 RNase H with the type 2 active-site motif 2012-12-09 2013-03-20 Nguyen, T.-N.,You, D.-J.,Kanaya, E.,Koga, Y.,Kanaya, S. Crystal structure of metagenome-derived LC9-RNase H1 with atypical DEDN active site motif Febs Lett. 2013 587 1418 1423 3W30 23542009 Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI 2012-12-07 2013-03-27 Nishide, A.,Kim, M.,Takagi, K.,Himeno, A.,Sanada, T.,Sasakawa, C.,Mizushima, T. Structural Basis for the Recognition of Ubc13 by the Shigella flexneri Effector OspI. 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An archaeal homolog of proteasome assembly factor functions as a proteasome activator Plos One 2013 8 0 0 3VZ9 23334297 Crystal structure of the chicken Spc24-Spc25 globular domain 2012-10-09 2013-04-03 Nishino, T.,Rago, F.,Hori, T.,Tomii, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T provides a structural platform for outer kinetochore assembly Embo J. 2013 32 424 436 3VX4 23534432 Crystal Structure of the Nucleotide-Binding Domain of S. mutans ComA, a Bifunctional ATP-binding Cassette Transporter Involved in the Quorum-sensing Pathway 2012-09-11 2013-04-17 Ishii, S.,Yano, T.,Okamoto, A.,Murakawa, T.,Hayashi, H. Boundary of the Nucleotide-Binding Domain of Streptococcus ComA Based on Functional and Structural Analysis Biochemistry 2013 52 2545 2555 4EU2 23593271 Crystal structure of 20s proteasome with novel inhibitor K-7174 2012-04-25 2013-05-01 Kikuchi, J.,Shibayama, N.,Yamada, S.,Wada, T.,Nobuyoshi, M.,Izumi, T.,Akutsu, M.,Kano, Y.,Sugiyama, K.,Ohki, M.,Park, S.Y.,Furukawa, Y. Homopiperazine derivatives as a novel class of proteasome inhibitors with a unique mode of proteasome binding. Plos One 2013 8 0 0 3VSQ Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 E236R Mutant in the presence of ethanol 2012-05-02 2013-05-08 Inanobe, A.,Kurachi, Y. Coupling of G Protein Binding to Channel Gating in Mammalian Inward Rectifier K+ channels To be Published 0 0 0 0 3W6L 23624891 Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase 2013-02-15 2013-05-29 Kim, H.-W.,Ishikawa, K. The role of disulfide bond in hyperthermophilic endocellulase Extremophiles 2013 17 593 599 3W6M 23624891 Contribution of disulfide bond toward thermostability in hyperthermostable endocellulase 2013-02-15 2013-05-29 Kim, H.-W.,Ishikawa, K. 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The crystal structure of multidrug-resistance regulator RamR with multiple drugs Nat Commun 2013 4 2078 2078 3VVY 23800819 Crystal Strucuture of The Ethidium-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium 2012-07-30 2013-07-03 Yamasaki, S.,Nikaido, E.,Nakashima, R.,Sakurai, K.,Fujiwara, D.,Fujii, I.,Nishino, K. The crystal structure of multidrug-resistance regulator RamR with multiple drugs Nat Commun 2013 4 2078 2078 3VVZ 23800819 Crystal Strucuture of The Rhodamine 6G-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium 2012-07-30 2013-07-03 Yamasaki, S.,Nikaido, E.,Nakashima, R.,Sakurai, K.,Fujiwara, D.,Fujii, I.,Nishino, K. 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The crystal structure of multidrug-resistance regulator RamR with multiple drugs Nat Commun 2013 4 2078 2078 3VW2 23800819 Crystal Strucuture of The Berberine-bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium 2012-07-30 2013-07-03 Yamasaki, S.,Nikaido, E.,Nakashima, R.,Sakurai, K.,Fujiwara, D.,Fujii, I.,Nishino, K. The crystal structure of multidrug-resistance regulator RamR with multiple drugs Nat Commun 2013 4 2078 2078 3W9I 23812586 Structural basis for the inhibition of bacterial multidrug exporters 2013-04-04 2013-07-03 Nakashima, R.,Sakurai, K.,Yamasaki, S.,Hayashi, K.,Nagata, C.,Hoshino, K.,Onodera, Y.,Nishino, K.,Yamaguchi, A. Structural basis for the inhibition of bacterial multidrug exporters Nature 2013 500 102 106 3W9J 23812586 Structural basis for the inhibition of bacterial multidrug exporters 2013-04-04 2013-07-03 Nakashima, R.,Sakurai, K.,Yamasaki, S.,Hayashi, K.,Nagata, C.,Hoshino, K.,Onodera, Y.,Nishino, K.,Yamaguchi, A. Structural basis for the inhibition of bacterial multidrug exporters Nature 2013 500 102 106 3W6G 23832195 Structure of peroxiredoxin from anaerobic hyperthermophilic archaeon Pyrococcus horikoshii 2013-02-14 2013-07-10 Nakamura, T.,Mori, A.,Niiyama, M.,Matsumura, H.,Tokuyama, C.,Morita, J.,Uegaki, K.,Inoue, T. Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii Acta Crystallogr.,Sect.F 2013 69 719 722 4HNZ 23818520 Crystal structure of eukaryotic HslV from Trypanosoma brucei 2012-10-22 2013-07-10 Sung, K.H.,Lee, S.Y.,Song, H.K. Structural and Biochemical Analyses of the Eukaryotic Heat Shock Locus V (HslV) from Trypanosoma brucei. J.Biol.Chem. 2013 288 23234 23243 3WAI 23815857 Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-L, O29867_ARCFU) from Archaeoglobus fulgidus as a MBP fusion 2013-05-03 2013-07-17 Matsumoto, S.,Shimada, A.,Kohda, D. Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases Bmc Struct.Biol. 2013 13 11 11 4FMP Crystal structure of thermostable, organic-solvent tolerant lipase from Geobacillus sp. strain ARM 2012-06-18 2013-07-31 Nisbar, N.D.,Rahman, R.N.Z.R.A.,Ali, M.S.M.,Leow, A.T.C. Crystallization of novel ARM lipase and elucidation of its space-grown crystal structure Thesis 2013 0 0 0 4GF7 Crystal structure of 2-Methyl-3-hydroxypyridine-5-carboxylic acid oxygenase (MHPCO), unliganded form 2012-08-03 2013-08-07 Kobayashi, J.,Yoshida, H.,Mikami, B.,Hayashi, H.,Kamitori, S.,Sawa, Y.,Yagi, T. Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase To be Published 0 0 0 0 3W9C 23856620 Crystal structure of the electron transfer complex of cytochrome p450cam with putidaredoxin 2013-04-03 2013-08-21 Hiruma, Y.,Hass, M.A.,Kikui, Y.,Liu, W.M.,Olmez, B.,Skinner, S.P.,Blok, A.,Kloosterman, A.,Koteishi, H.,Lohr, F.,Schwalbe, H.,Nojiri, M.,Ubbink, M. The structure of the cytochrome p450cam-putidaredoxin complex determined by paramagnetic NMR spectroscopy and crystallography. J.Mol.Biol. 2013 425 4353 4365 3VWU 23949117 Crystal structure of peroxiredoxin 4 from M. musculus 2012-09-03 2013-09-04 Sato, Y.,Kojima, R.,Okumura, M.,Hagiwara, M.,Masui, S.,Maegawa, K.,Saiki, M.,Horibe, T.,Suzuki, M.,Inaba, K. Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding Sci Rep 2013 3 2456 2456 3VWV 23949117 crystal structure of N-terminally truncated peroxiredoxin 4 from M. musculus 2012-09-03 2013-09-04 Sato, Y.,Kojima, R.,Okumura, M.,Hagiwara, M.,Masui, S.,Maegawa, K.,Saiki, M.,Horibe, T.,Suzuki, M.,Inaba, K. Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding Sci Rep 2013 3 2456 2456 3VWW 23949117 Crystal structure of a0-domain of P5 from H. sapiens 2012-09-03 2013-09-04 Sato, Y.,Kojima, R.,Okumura, M.,Hagiwara, M.,Masui, S.,Maegawa, K.,Saiki, M.,Horibe, T.,Suzuki, M.,Inaba, K. Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding Sci Rep 2013 3 2456 2456 3WDZ 24011591 Crystal Structure of Keap1 in Complex with phosphorylated p62 2013-06-26 2013-09-04 Ichimura, Y.,Waguri, S.,Sou, Y.S.,Kageyama, S.,Hasegawa, J.,Ishimura, R.,Saito, T.,Yang, Y.,Kouno, T.,Fukutomi, T.,Hoshii, T.,Hirao, A.,Takagi, K.,Mizushima, T.,Motohashi, H.,Lee, M.S.,Yoshimori, T.,Tanaka, K.,Yamamoto, M.,Komatsu, M. Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy. Mol.Cell 2013 51 618 631 3WA2 24311589 High resolution crystal structure of copper amine oxidase from arthrobacter globiformis 2013-04-22 2013-09-11 Murakawa, T.,Hayashi, H.,Sunami, T.,Kurihara, K.,Tamada, T.,Kuroki, R.,Suzuki, M.,Tanizawa, K.,Okajima, T. High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2 Acta Crystallogr.,Sect.D 2013 69 2483 2494 4H2P Tetrameric form of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase (MHPCO) 2012-09-13 2013-09-18 Kobayashi, J.,Yoshida, H.,Mikami, B.,Hayashi, H.,Kamitori, S.,Yagi, T. Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase To be Published 0 0 0 0 4H2Q structure of MHPCO-5HN complex 2012-09-13 2013-09-18 Kobayashi, J.,Yoshida, H.,Mikami, B.,Hayashi, H.,Kamitori, S.,Yagi, T. Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase To be Published 0 0 0 0 4H2R Structure of MHPCO Y270F mutant, 5-hydroxynicotinic acid complex 2012-09-13 2013-09-18 Kobayashi, J.,Yoshida, H.,Mikami, B.,Hayashi, H.,Kamitori, S.,Yagi, T. Crystal structure of 2-Methyl-3-hydroxypyridine-5-carboxylic acid oxygenase To be Published 0 0 0 0 4H8K 23500886 Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid 2012-09-23 2013-09-25 Nguyen, T.N.,You, D.J.,Matsumoto, H.,Kanaya, E.,Koga, Y.,Kanaya, S. Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid J.Struct.Biol. 2013 182 144 154 4H8K 23500886 Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid 2012-09-23 2013-09-25 Nguyen, T.N.,You, D.J.,Matsumoto, H.,Kanaya, E.,Koga, Y.,Kanaya, S. Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid J.Struct.Biol. 2013 182 144 154 3ZDM 24100326 Crystal structure of the Sgt2 N domain and the Get5 UBL domain complex 2012-11-29 2013-10-02 Tung, J.-Y.,Li, Y.-C.,Lin, T.-W.,Hsiao, C.-D. Structure of the Sgt2 Dimerization Domain Complexed with the Get5 Ubl Domain Involved in the Targeting of Tail-Anchored Membrane Proteins to the Endoplasmic Reticulum. Acta Crystallogr.,Sect.D 2013 69 2081 0 3WAJ 24127570 Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) complex with Zn and sulfate 2013-05-03 2013-10-30 Matsumoto, S.,Shimada, A.,Nyirenda, J.,Igura, M.,Kawano, Y.,Kohda, D. Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation Proc.Natl.Acad.Sci.USA 2013 110 17868 17873 3WBG 24121341 Structure of the human heart fatty acid-binding protein in complex with 1-anilinonaphtalene-8-sulphonic acid 2013-05-16 2013-10-30 Hirose, M.,Sugiyama, S.,Ishida, H.,Niiyama, M.,Matsuoka, D.,Hara, T.,Mizohata, E.,Murakami, S.,Inoue, T.,Matsuoka, S.,Murata, M. Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid J.SYNCHROTRON RADIAT. 2013 20 923 928 3WDN 24121354 High-resolution X-ray crystal structure of bovine H-protein using a high-pressure cryocooling method 2013-06-19 2013-10-30 Higashiura, A.,Ohta, K.,Masaki, M.,Sato, M.,Inaka, K.,Tanaka, H.,Nakagawa, A. High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method J.SYNCHROTRON RADIAT. 2013 20 989 993 3WIN 24165130 Clostridium botulinum Hemagglutinin 2013-09-19 2013-11-06 Amatsu, S.,Sugawara, Y.,Matsumura, T.,Kitadokoro, K.,Fujinaga, Y. Crystal Structure of Clostridium botulinum Whole Hemagglutinin Reveals a Huge Triskelion-shaped Molecular Complex J.Biol.Chem. 2013 288 35617 35625 3WE2 24257077 Structure of BLM RQC domain bound to a phosphate ion 2013-06-28 2013-11-13 Kim, S.Y.,Hakoshima, T.,Kitano, K. Structure of the RecQ C-terminal Domain of Human Bloom Syndrome Protein Sci Rep 2013 3 3294 3294 3WE2 24257077 Structure of BLM RQC domain bound to a phosphate ion 2013-06-28 2013-11-13 Kim, S.Y.,Hakoshima, T.,Kitano, K. Structure of the RecQ C-terminal Domain of Human Bloom Syndrome Protein Sci Rep 2013 3 3294 3294 3WC8 24206001 Dimeric horse cytochrome c obtained by refolding with desalting method 2013-05-25 2013-12-11 Parui, P.P.,Deshpande, M.S.,Nagao, S.,Kamikubo, H.,Komori, H.,Higuchi, Y.,Kataoka, M.,Hirota, S. Formation of Oligomeric Cytochrome c during Folding by Intermolecular Hydrophobic Interaction between N- and C-Terminal alpha-Helices Biochemistry 2013 52 8732 8744 3WHI 24279884 Crystal structure of unautoprocessed form of IS1-inserted Pro-subtilisin E 2013-08-26 2013-12-25 Uehara, R.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Formation of the High-Affinity Calcium Binding Site in Pro-subtilisin E with the Insertion Sequence IS1 of Pro-Tk-subtilisin Biochemistry 2013 52 9080 9088 3WN7 24366543 Crystal Structure of Keap1 in Complex with the N-terminal region of the Nrf2 transcription factor 2013-12-05 2013-12-25 Fukutomi, T.,Takagi, K.,Mizushima, T.,Ohuchi, N.,Yamamoto, M. Kinetic, thermodynamic, and structural characterizations of the association between Nrf2-DLGex degron and Keap1 Mol.Cell.Biol. 2014 34 832 846 3W3O Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-053 2012-12-27 2014-01-01 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Matsuoka, S.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Rocha, J.R.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-053 To be Published 0 0 0 0 3WOV Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi 2014-01-05 2014-01-22 Matsuoka, R.,Nyirenda, J.,Maita, N.,Kohda, D. Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi To be Published 0 0 0 0 3WKT 24550278 Complex structure of an open form of NADPH-cytochrome P450 reductase and heme oxygenase-1 2013-10-31 2014-01-29 Sugishima, M.,Sato, H.,Higashimoto, Y.,Harada, J.,Wada, K.,Fukuyama, K.,Noguchi, M. Structural basis for the electron transfer from an open form of NADPH-cytochrome P450 oxidoreductase to heme oxygenase. Proc.Natl.Acad.Sci.USA 2014 111 2524 2529 4JP8 24115021 Crystal structure of Pro-F17H/S324A 2013-03-19 2014-01-29 Yuzaki, K.,Sanda, Y.,You, D.J.,Uehara, R.,Koga, Y.,Kanaya, S. Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain Protein Sci. 2013 22 1711 1721 4LTT 24060809 Crystal structure of native apo toxin from Helicobacter pylori 2013-07-23 2014-02-05 Pathak, C.,Im, H.,Yang, Y.J.,Yoon, H.J.,Kim, H.M.,Kwon, A.R.,Lee, B.J. Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity Biochim.Biophys.Acta 2013 1834 2579 2590 3WEI 24531458 Crystal structure of the human squalene synthase Y73A mutant in complex with presqualene pyrophosphate 2013-07-07 2014-02-12 Liu, C.I.,Jeng, W.Y.,Chang, W.J.,Shih, M.F.,Ko, T.P.,Wang, A.H.J. Structural insights into the catalytic mechanism of human squalene synthase. Acta Crystallogr.,Sect.D 2014 70 231 241 4NYN Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 2013-12-11 2014-02-12 You, D.J.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 To be Published 0 0 0 0 4NYN Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 2013-12-11 2014-02-12 You, D.J.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 To be Published 0 0 0 0 3W5K 24699649 Crystal structure of Snail1 and importin beta complex 2013-01-30 2014-03-05 Choi, S.,Yamashita, E.,Yasuhara, N.,Song, J.,Son, S.Y.,Won, Y.H.,Hong, H.R.,Shin, Y.S.,Sekimoto, T.,Park, I.Y.,Yoneda, Y.,Lee, S.J. Structural basis for the selective nuclear import of the C2H2 zinc-finger protein Snail by importin beta. Acta Crystallogr.,Sect.D 2014 70 1050 1060 3W7C Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-077 2013-02-28 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-077 To be Published 0 0 0 0 3W7J Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-6-040 2013-02-28 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-6-040 To be Published 0 0 0 0 3W7L Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-075 2013-03-02 2014-03-05 Inaoka, D.K.,Iida, M.,Tabuchi, T.,Lee, N.,Hashimoto, S.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Sakamoto, K.,Suzuki, S.,Balogun, E.O.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-075 To be Published 0 0 0 0 3WKV 24584463 Voltage-gated proton channel: VSOP/Hv1 chimeric channel 2013-10-31 2014-03-05 Takeshita, K.,Sakata, S.,Yamashita, E.,Fujiwara, Y.,Kawanabe, A.,Kurokawa, T.,Okochi, Y.,Matsuda, M.,Narita, H.,Okamura, Y.,Nakagawa, A. X-ray crystal structure of voltage-gated proton channel. Nat.Struct.Mol.Biol. 2014 21 352 357 4KAZ 24594808 Crystal structure of RNase T in complex with a Y structured DNA 2013-04-23 2014-03-05 Hsiao, Y.Y.,Fang, W.H.,Lee, C.C.,Chen, Y.P.,Yuan, H.S. Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol. 2014 12 0 0 4KB0 24594808 Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC ) 2013-04-23 2014-03-05 Hsiao, Y.Y.,Fang, W.H.,Lee, C.C.,Chen, Y.P.,Yuan, H.S. Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol. 2014 12 0 0 4KB1 24594808 Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) 2013-04-23 2014-03-05 Hsiao, Y.Y.,Fang, W.H.,Lee, C.C.,Chen, Y.P.,Yuan, H.S. Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol. 2014 12 0 0 3W88 Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-200 2013-03-12 2014-03-12 Inaoka, D.K.,Hashimoto, S.,Rocha, J.R.,Iida, M.,Tabuchi, T.,Lee, N.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Balogun, E.O.,Sakamoto, K.,Suzuki, S.,Montanari, C.A.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-200 To be Published 0 0 0 0 3W88 Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-200 2013-03-12 2014-03-12 Inaoka, D.K.,Hashimoto, S.,Rocha, J.R.,Iida, M.,Tabuchi, T.,Lee, N.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Balogun, E.O.,Sakamoto, K.,Suzuki, S.,Montanari, C.A.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-200 To be Published 0 0 0 0 3WDP 24598756 Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure 2013-06-19 2014-03-12 Nakabayashi, M.,Kataoka, M.,Mishima, Y.,Maeno, Y.,Ishikawa, K. Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure. Acta Crystallogr.,Sect.D 2014 70 877 888 3WIM GABARAP-LIR peptide complex 2013-09-19 2014-03-12 Lystad, A.,Ichimura, Y.,Takagi, K.,Yang, Y.,Pankiv, S.,Mizushima, T.,Komatsu, M.,Simonsen, A. GABARAP-LIR peptide complex To be Published 2014 0 0 0 4KDP 24531929 TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins 2013-04-25 2014-03-19 Chang, Y.M.,Ho, C.H.,Chen, C.K.,Maestre-Reyna, M.,Chang-Chien, M.W.,Wang, A.H. TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins. Nucleic Acids Res. 2014 42 5314 5321 3WHL 24685148 Crystal structure of Nas2 N-terminal domain complexed with PAN-Rpt5C chimera 2013-08-26 2014-03-26 Satoh, T.,Saeki, Y.,Hiromoto, T.,Wang, Y.H.,Uekusa, Y.,Yagi, H.,Yoshihara, H.,Yagi-Utsumi, M.,Mizushima, T.,Tanaka, K.,Kato, K. Structural basis for proteasome formation controlled by an assembly chaperone nas2. Structure 2014 22 731 743 3WI8 24191678 Crystal structure of horse heart myoglobin reconstituted with manganese porphycene 2013-09-09 2014-03-26 Oohora, K.,Kihira, Y.,Mizohata, E.,Inoue, T.,Hayashi, T. C(sp3)-H bond hydroxylation catalyzed by myoglobin reconstituted with manganese porphycene. J.Am.Chem.Soc. 2013 135 17282 17285 3WJD Crystal structure of mutant nitrobindin F44W/M75L/H76L/Q96C/M148L/H158L (NB5) from Arabidopsis thaliana 2013-10-08 2014-04-02 Fukumoto, K.,Onoda, A.,Mizohata, E.,Bocola, M.,Inoue, T.,Schwaneberg, U.,Hayashi, T. A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity CHEMCATCHEM 2014 0 0 0 3WJE Crystal structure of mutant nitrobindin M75W/H76L/Q96C/M148L/H158L (NB6) from Arabidopsis thaliana 2013-10-08 2014-04-02 Fukumoto, K.,Onoda, A.,Mizohata, E.,Bocola, M.,Inoue, T.,Schwaneberg, U.,Hayashi, T. A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity CHEMCATCHEM 2014 0 0 0 3WJF Crystal structure of mutant nitrobindin M75L/H76L/Q96C/V128W/M148L/H158L (NB9) from Arabidopsis thaliana 2013-10-08 2014-04-02 Fukumoto, K.,Onoda, A.,Mizohata, E.,Bocola, M.,Inoue, T.,Schwaneberg, U.,Hayashi, T. A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity CHEMCATCHEM 2014 0 0 0 3WJG Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148W/H158L (NB10) from Arabidopsis thaliana 2013-10-08 2014-04-02 Fukumoto, K.,Onoda, A.,Mizohata, E.,Bocola, M.,Inoue, T.,Schwaneberg, U.,Hayashi, T. A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity CHEMCATCHEM 2014 0 0 0 3W87 Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-103 2013-03-12 2014-04-09 Inaoka, D.K.,Hashimoto, S.,Rocha, J.R.,Iida, M.,Tabuchi, T.,Lee, N.,Matsuoka, S.,Kuranaga, T.,Shiba, T.,Balogun, E.O.,Sakamoto, K.,Suzuki, S.,Montanari, C.A.,Nara, T.,Aoki, T.,Inoue, M.,Honma, T.,Tanaka, A.,Harada, S.,Kita, K. Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-103 To be Published 0 0 0 0 3WMM 24670637 Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form 2013-11-22 2014-04-09 Niwa, S.,Yu, L.J.,Takeda, K.,Hirano, Y.,Kawakami, T.,Wang-Otomo, Z.Y.,Miki, K. Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature 2014 508 228 232 4KEQ 24699732 Crystal structure of 4-pyridoxolactonase, 5-pyridoxolactone bound 2013-04-26 2014-04-09 Kobayashi, J.,Yoshikane, Y.,Yagi, T.,Baba, S.,Mizutani, K.,Takahashi, N.,Mikami, B. Structure of 4-pyridoxolactonase from Mesorhizobium loti. Acta Crystallogr.,Sect.F 2014 70 424 432 3WL3 24702737 N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii 2013-11-07 2014-05-07 Mine, S.,Niiyama, M.,Hashimoto, W.,Ikegami, T.,Koma, D.,Ohmoto, T.,Fukuda, Y.,Inoue, T.,Abe, Y.,Ueda, T.,Morita, J.,Uegaki, K.,Nakamura, T. Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase Febs J. 2014 281 2584 2596 4KIF 24914966 Crystal structure of methyltransferase from Streptomyces hygroscopicus complexed with phenylpyruvic acid 2013-05-02 2014-05-07 Zou, X.W.,Liu, Y.C.,Hsu, N.S.,Huang, C.J.,Lyu, S.Y.,Chan, H.C.,Chang, C.Y.,Yeh, H.W.,Lin, K.H.,Wu, C.J.,Tsai, M.D.,Li, T.L. Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase Acta Crystallogr.,Sect.D 2014 70 1549 1560 4L8W 24028568 Crystal structure of gamma glutamyl hydrolase (H218N) from zebrafish complex with MTX polyglutamate 2013-06-18 2014-05-14 Chuankhayan, P.,Kao, T.-T.,Lin, C.-C.,Guan, H.-H.,Nakagawa, A.,Fu, T.-F.,Chen, C.-J. Structural insights into the hydrolysis and polymorphism of methotrexate polyglutamate by zebrafish gamma-glutamyl hydrolase J.Med.Chem. 2013 56 7625 7635 4L95 24028568 Crystal structure of gamma glutamyl hydrolase (H218N) from zebrafish 2013-06-18 2014-05-14 Chuankhayan, P.,Kao, T.-T.,Lin, C.-C.,Guan, H.-H.,Nakagawa, A.,Fu, T.-F.,Chen, C.-J. Structural insights into the hydrolysis and polymorphism of methotrexate polyglutamate by zebrafish gamma-glutamyl hydrolase J.Med.Chem. 2013 56 7625 7635 4OCV 24816108 N-acetylhexosamine 1-phosphate kinase_ATCC15697 in complex with GlcNAc and AMPPNP 2014-01-09 2014-05-14 Wang, K.C.,Lyu, S.Y.,Liu, Y.C.,Chang, C.Y.,Wu, C.J.,Li, T.L. Insights into the binding specificity and catalytic mechanism of N-acetylhexosamine 1-phosphate kinases through multiple reaction complexes. Acta Crystallogr.,Sect.D 2014 70 1401 1410 4K89 Crystal structure of Pseudomonas aeruginosa strain K solvent tolerant elastase 2013-04-18 2014-05-21 Ali, M.S.M.,Said, Z.S.A.M.,Rahman, R.N.Z.R.A.,Basri, M.,Salleh, A.B. Crystal structure analysia of solvent tolerant elastase strain K To be Published 0 0 0 0 3WCT 25004960 The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Oxygenated form 2013-06-01 2014-06-04 Numoto, N.,Nakagawa, T.,Ohara, R.,Hasegawa, T.,Kita, A.,Yoshida, T.,Maruyama, T.,Imai, K.,Fukumori, Y.,Miki, K. The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins Acta Crystallogr.,Sect.D 2014 70 1823 1831 3WCU 25004960 The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Deoxygenated form 2013-06-01 2014-06-04 Numoto, N.,Nakagawa, T.,Ohara, R.,Hasegawa, T.,Kita, A.,Yoshida, T.,Maruyama, T.,Imai, K.,Fukumori, Y.,Miki, K. The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins Acta Crystallogr.,Sect.D 2014 70 1823 1831 3WGD 24462249 Crystal structure of ERp46 Trx1 2013-08-04 2014-06-25 Kojima, R.,Okumura, M.,Masui, S.,Kanemura, S.,Inoue, M.,Saiki, M.,Yamaguchi, H.,Hikima, T.,Suzuki, M.,Akiyama, S.,Inaba, K. Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family Structure 2014 22 431 443 3WGE 24462249 Crystal structure of ERp46 Trx2 2013-08-04 2014-06-25 Kojima, R.,Okumura, M.,Masui, S.,Kanemura, S.,Inoue, M.,Saiki, M.,Yamaguchi, H.,Hikima, T.,Suzuki, M.,Akiyama, S.,Inaba, K. Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family Structure 2014 22 431 443 3WGX 24462249 Crystal structure of ERp46 Trx2 in a complex with Prx4 C-term 2013-08-13 2014-06-25 Kojima, R.,Okumura, M.,Masui, S.,Kanemura, S.,Inoue, M.,Saiki, M.,Yamaguchi, H.,Hikima, T.,Suzuki, M.,Akiyama, S.,Inaba, K. 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J.Biol.Chem. 2014 289 24499 24510 4U5X 25128531 Structure of plant small GTPase OsRac1 complexed with the non-hydrolyzable GTP analog GMPPNP 2014-07-25 2014-08-20 Kosami, K.,Ohki, I.,Nagano, M.,Furuita, K.,Sugiki, T.,Kawano, Y.,Kawasaki, T.,Fujiwara, T.,Nakagawa, A.,Shimamoto, K.,Kojima, C. The Crystal Structure of the Plant Small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase J.Biol.Chem. 2014 289 28569 28578 4MAD 25034434 Crystal structure of beta-galactosidase C (BgaC) from Bacillus circulans ATCC 31382 2013-08-16 2014-08-27 Henze, M.,You, D.J.,Kamerke, C.,Hoffmann, N.,Angkawidjaja, C.,Ernst, S.,Pietruszka, J.,Kanaya, S.,Elling, L. Rational design of a glycosynthase by the crystal structure of beta-galactosidase from Bacillus circulans (BgaC) and its use for the synthesis of N-acetyllactosamine type 1 glycan structures. 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J.Biotechnol. 2014 191 78 85 3WU2 21499260 Crystal structure analysis of Photosystem II complex 2014-04-21 2014-09-03 Umena, Y.,Kawakami, K.,Shen, J.-R.,Kamiya, N. Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 A Nature 2011 473 55 60 4P7W 25171735 L-proline-bound L-proline cis-4-hydroxylase 2014-03-28 2014-09-17 Koketsu, K.,Shomura, Y.,Moriwaki, K.,Hayashi, M.,Mitsuhashi, S.,Hara, R.,Kino, K.,Higuchi, Y. Refined Regio- and Stereoselective Hydroxylation of l-Pipecolic Acid by Protein Engineering of l-Proline cis-4-Hydroxylase Based on the X-ray Crystal Structure. Acs Synth Biol 2015 4 383 392 4P7X 25171735 L-pipecolic acid-bound L-proline cis-4-hydroxylase 2014-03-28 2014-09-17 Koketsu, K.,Shomura, Y.,Moriwaki, K.,Hayashi, M.,Mitsuhashi, S.,Hara, R.,Kino, K.,Higuchi, Y. Refined Regio- and Stereoselective Hydroxylation of l-Pipecolic Acid by Protein Engineering of l-Proline cis-4-Hydroxylase Based on the X-ray Crystal Structure. 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Identification of protein kinase CK2 inhibitors using solvent dipole ordering virtual screening To be Published 0 0 0 0 3WX5 25426413 Crystal structure of metagenome-derived glycoside hydrolase family 12 endoglucanase 2014-07-17 2014-11-12 Okano, H.,Ozaki, M.,Kanaya, E.,Kim, J.J.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Structure and stability of metagenome-derived glycoside hydrolase family 12 cellulase (LC-CelA) a homolog of Cel12A from Rhodothermus marinus FEBS Open Bio 2014 4 936 946 3WYD 25348365 C-terminal esterase domain of LC-Est1 2014-08-26 2014-11-12 Okano, H.,Hong, X.,Kanaya, E.,Angkawidjaja, C.,Kanaya, S. Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension. Protein Sci. 2015 24 93 104 3WYD 25348365 C-terminal esterase domain of LC-Est1 2014-08-26 2014-11-12 Okano, H.,Hong, X.,Kanaya, E.,Angkawidjaja, C.,Kanaya, S. 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Crystal structure of laccase from Lentinus sp. at 1.8 A resolution To be Published 0 0 0 0 3WO3 25500532 Crystal structure of IL-18 in complex with IL-18 receptor alpha 2013-12-19 2014-12-17 Tsutsumi, N.,Kimura, T.,Arita, K.,Ariyoshi, M.,Ohnishi, H.,Yamamoto, T.,Zuo, X.,Maenaka, K.,Park, E.Y.,Kondo, N.,Shirakawa, M.,Tochio, H.,Kato, Z. The structural basis for receptor recognition of human interleukin-18 Nat Commun 2014 5 5340 5340 3WYP 25434833 Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution 2014-09-05 2014-12-24 Kawato, T.,Mizohata, E.,Meshizuka, T.,Doi, H.,Kawamura, T.,Matsumura, H.,Yumura, K.,Tsumoto, K.,Kodama, T.,Inoue, T.,Sugiyama, A. Crystal structure of streptavidin mutant with low immunogenicity. 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Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA 2015 112 382 387 3WYW 25497345 Structural characterization of catalytic site of a Nilaparvata lugens delta-class glutathione transferase 2014-09-09 2015-01-14 Yamamoto, K.,Higashiura, A.,Hossain, M.T.,Yamada, N.,Shiotsuki, T.,Nakagawa, A. Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase. Arch.Biochem.Biophys. 2014 0 36 42 4OEC Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 2014-01-13 2015-01-14 Atsuta, Y.,You, D.J.,Takano, K.,Koga, Y.,Kanaya, S. Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 To be Published 0 0 0 0 4OEC Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 2014-01-13 2015-01-14 Atsuta, Y.,You, D.J.,Takano, K.,Koga, Y.,Kanaya, S. Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 To be Published 0 0 0 0 4PAE 25479089 Crystal structure of catalase-peroxidase (KatG) W78F mutant from Synechococcus elongatus PCC7942 2014-04-08 2015-01-14 Kamachi, S.,Hirabayashi, K.,Tamoi, M.,Shigeoka, S.,Tada, T.,Wada, K. Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942 in complex with the antitubercular pro-drug isoniazid. Febs Lett. 2015 589 131 137 3WIH 25492858 Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A. 2013-09-12 2015-01-21 Nakayama, T.,Mizohata, E.,Yamashita, T.,Nagatoishi, S.,Nakakido, M.,Iwanari, H.,Mochizuki, Y.,Kado, Y.,Yokota, Y.,Satoh, R.,Tsumoto, K.,Fujitani, H.,Kodama, T.,Hamakubo, T.,Inoue, T. Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses Protein Sci. 2015 24 328 340 3X00 25560769 Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with bis iminobiotin long tail (Bis-IMNtail) at 1.3 A resolution 2014-10-09 2015-01-21 Kawato, T.,Mizohata, E.,Shimizu, Y.,Meshizuka, T.,Yamamoto, T.,Takasu, N.,Matsuoka, M.,Matsumura, H.,Kodama, T.,Kanai, M.,Doi, H.,Inoue, T.,Sugiyama, A. Structure-based design and synthesis of a bivalent iminobiotin analog showing strong affinity toward a low immunogenic streptavidin mutant. Biosci.Biotechnol.Biochem. 2015 79 640 642 3X17 25545469 Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase 2014-10-30 2015-01-21 Okano, H.,Kanaya, E.,Ozaki, M.,Angkawidjaja, C.,Kanaya, S. Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain. Protein Sci. 2015 24 408 419 3WVM 25491543 The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with stearic acid 2014-05-25 2015-01-28 Matsuoka, S.,Sugiyama, S.,Matsuoka, D.,Hirose, M.,Lethu, S.,Ano, H.,Hara, T.,Ichihara, O.,Kimura, S.R.,Murakami, S.,Ishida, H.,Mizohata, E.,Inoue, T.,Murata, M. Water-mediated recognition of simple alkyl chains by heart-type fatty-acid-binding protein. Angew.Chem.Int.Ed.Engl. 2015 54 1508 1511 4TJZ 25491543 The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with capric acid 2014-05-25 2015-01-28 Matsuoka, S.,Sugiyama, S.,Matsuoka, D.,Hirose, M.,Lethu, S.,Ano, H.,Hara, T.,Ichihara, O.,Kimura, S.R.,Murakami, S.,Ishida, H.,Mizohata, E.,Inoue, T.,Murata, M. Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein Angew.Chem.Int.Ed.Engl. 2015 54 1508 1511 4TKB 25491543 The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with lauric acid 2014-05-26 2015-01-28 Matsuoka, S.,Sugiyama, S.,Matsuoka, D.,Hirose, M.,Lethu, S.,Ano, H.,Hara, T.,Ichihara, O.,Kimura, S.R.,Murakami, S.,Ishida, H.,Mizohata, E.,Inoue, T.,Murata, M. Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein Angew.Chem.Int.Ed.Engl. 2015 54 1508 1511 4TKH 25491543 The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with myristic acid 2014-05-26 2015-01-28 Matsuoka, S.,Sugiyama, S.,Matsuoka, D.,Hirose, M.,Lethu, S.,Ano, H.,Hara, T.,Ichihara, O.,Kimura, S.R.,Murakami, S.,Ishida, H.,Mizohata, E.,Inoue, T.,Murata, M. Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein Angew.Chem.Int.Ed.Engl. 2015 54 1508 1511 4TKJ 25491543 The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitic acid 2014-05-26 2015-01-28 Matsuoka, S.,Sugiyama, S.,Matsuoka, D.,Hirose, M.,Lethu, S.,Ano, H.,Hara, T.,Ichihara, O.,Kimura, S.R.,Murakami, S.,Ishida, H.,Mizohata, E.,Inoue, T.,Murata, M. Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein Angew.Chem.Int.Ed.Engl. 2015 54 1508 1511 3WOW Crystal structure of human CK2a with AMPPNP 2014-01-06 2015-02-04 Kinoshita, T.,Nakaniwa, T.,Sekiguchi, Y.,Sogabe, Y.,Sakurai, A.,Nakamura, S.,Nakanishi, I.,Shimada, K.,Tanaka, M. A hydrophobic residue divergence of CK2a contribute to a species-dependent variation for apigenin binding mode but not for an ATP analogue To be Published 0 0 0 0 3WTH 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Imidacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WTI 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Clothianidin 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WTK 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Thiacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WTM 25267717 Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Nitromethylene Analogue of Imidacloprid 2014-04-11 2015-02-04 Ihara, M.,Okajima, T.,Yamashita, A.,Oda, T.,Asano, T.,Matsui, M.,Sattelle, D.B.,Matsuda, K. Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions Mol.Pharmacol. 2014 86 736 746 3WZP 25645976 Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.2 A resolution 2014-10-01 2015-02-18 Kawato, T.,Mizohata, E.,Shimizu, Y.,Meshizuka, T.,Yamamoto, T.,Takasu, N.,Matsuoka, M.,Matsumura, H.,Kodama, T.,Kanai, M.,Doi, H.,Inoue, T.,Sugiyama, A. Structure-based design of a streptavidin mutant specific for an artificial biotin analogue. J.Biochem. 2015 157 467 475 3WZQ 25645976 Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.7 A resolution 2014-10-01 2015-02-18 Kawato, T.,Mizohata, E.,Shimizu, Y.,Meshizuka, T.,Yamamoto, T.,Takasu, N.,Matsuoka, M.,Matsumura, H.,Kodama, T.,Kanai, M.,Doi, H.,Inoue, T.,Sugiyama, A. Structure-based design of a streptavidin mutant specific for an artificial biotin analogue. J.Biochem. 2015 157 467 475 4TWY 25614110 Structure of SARS-3CL protease complex with a phenylbenzoyl (S,R)-N-decalin type inhibitor 2014-07-02 2015-02-18 Shimamoto, Y.,Hattori, Y.,Kobayashi, K.,Teruya, K.,Sanjoh, A.,Nakagawa, A.,Yamashita, E.,Akaji, K. Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors Bioorg.Med.Chem. 2015 23 876 890 4WY3 25614110 Structure of SARS-3CL protease complex with a phenylbenzoyl (R,S)-N-decalin type inhibitor 2014-11-15 2015-02-18 Shimamoto, Y.,Hattori, Y.,Kobayashi, K.,Teruya, K.,Sanjoh, A.,Nakagawa, A.,Yamashita, E.,Akaji, K. Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors. Bioorg.Med.Chem. 2015 23 876 890 3WQ0 Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide 2014-01-21 2015-02-25 Kataoka, M.,Ishikawa, K. Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide To be Published 0 0 0 0 3WQ1 Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with cello-oligosaccharide 2014-01-21 2015-02-25 Kataoka, M.,Ishikawa, K. Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with cello-oligosaccharide To be Published 0 0 0 0 3WR0 Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus 2014-02-06 2015-03-11 Kataoka, M.,Ishikawa, K. Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus To be Published 0 0 0 0 4RNZ 25760614 Structure of Helicobacter pylori Csd3 from the hexagonal crystal 2014-10-27 2015-03-11 An, D.R.,Kim, H.S.,Kim, J.,Im, H.N.,Yoon, H.J.,Yoon, J.Y.,Jang, J.Y.,Hesek, D.,Lee, M.,Mobashery, S.,Kim, S.J.,Lee, B.I.,Suh, S.W. Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase. Acta Crystallogr.,Sect.D 2015 71 675 686 4S0G 25728925 Crystal structure of PTPN3 (PTPH1) in complex with Eps15 pTyr849 P850V peptide 2014-12-31 2015-03-11 Chen, K.E.,Li, M.Y.,Chou, C.C.,Ho, M.R.,Chen, G.C.,Meng, T.C.,Wang, A.H. Substrate specificity and plasticity of FERM-containing protein tyrosine phosphatases. Structure 2015 23 653 664 3WRH Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermedite To be Published 0 0 0 0 3WRI Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermediate To be Published 0 0 0 0 3WRJ Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermedite to be published 0 0 0 0 3WRK Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermedite To be Published 0 0 0 0 3WRL Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermedite To be published 0 0 0 0 3WRM Crystal structure of P450cam 2014-02-25 2015-03-18 Kishimoto, A.,Takagi, K.,Amano, A.,Sakurai, K.,Katayama, Y.,Aminaka, R.,Ito, M.,Mizushima, T.,Shimada, H. Structure of P450cam intermedite To be published 0 0 0 0 3WSO 26460611 Crystal structure of the Skp1-FBG3 complex 2014-03-18 2015-03-25 Kumanomidou, T.,Nishio, K.,Takagi, K.,Nakagawa, T.,Suzuki, A.,Yamane, T.,Tokunaga, F.,Iwai, K.,Murakami, A.,Yoshida, Y.,Tanaka, K.,Mizushima, T. The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3 Plos One 2015 10 0 0 3WVZ 25760597 Crystal structure of Hikeshi, a new nuclear transport receptor of Hsp70 2014-06-12 2015-03-25 Song, J.,Kose, S.,Watanabe, A.,Son, S.Y.,Choi, S.,Hong, H.,Yamashita, E.,Park, I.Y.,Imamoto, N.,Lee, S.J. Structural and functional analysis of Hikeshi, a new nuclear transport receptor of Hsp70s Acta Crystallogr.,Sect.D 2015 71 473 483 3WVZ 25760597 Crystal structure of Hikeshi, a new nuclear transport receptor of Hsp70 2014-06-12 2015-03-25 Song, J.,Kose, S.,Watanabe, A.,Son, S.Y.,Choi, S.,Hong, H.,Yamashita, E.,Park, I.Y.,Imamoto, N.,Lee, S.J. 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Acta Crystallogr F Struct Biol 2015 71 726 730 4XM1 26057790 N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the presence of cadmium 2015-01-14 2015-06-10 Nakamura, T.,Niiyama, M.,Hashimoto, W.,Ida, K.,Abe, M.,Morita, J.,Uegaki, K. Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F 2015 71 657 662 4XM2 26057790 N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the absence of cadmium 2015-01-14 2015-06-10 Nakamura, T.,Niiyama, M.,Hashimoto, W.,Ida, K.,Abe, M.,Morita, J.,Uegaki, K. Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F 2015 71 657 662 3WWS Crystal structure of Serine/threonine-protein kinase 3 2014-06-27 2015-07-01 Lee, S.J.,Song, J.,Yamashita, E. Crystal structure of Serine/threonine-protein kinase 3 To be Published 0 0 0 0 4TL6 26113637 Crystal structure of N-terminal domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science 2015 349 312 316 4TL7 26113637 Crystal structure of N-terminal C1 domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science 2015 349 312 316 4TL8 26113637 Crystal structure of N-terminal C1 domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Atomic-scale origins of slowness in the cyanobacterial circadian clock Science 2015 349 312 316 4TL9 26113637 Crystal structure of N-terminal C1 domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science 2015 349 312 316 4TLA 26113637 Crystal structure of N-terminal C1 domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science 2015 349 312 316 4TLB 26113637 Crystal structure of N-terminal C1 domain of KaiC 2014-05-29 2015-07-01 Abe, J.,Hiyama, T.B.,Mukaiyama, A.,Son, S.,Mori, T.,Saito, S.,Osako, M.,Wolanin, J.,Yamashita, E.,Kondo, T.,Akiyama, S. Circadian rhythms. 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Atomic-scale origins of slowness in the cyanobacterial circadian clock Science 2015 349 312 316 4TRW 26264846 Structure of BACE1 complex with a syn-HEA-type inhibitor 2014-06-18 2015-07-01 Hattori, Y.,Kobayashi, K.,Deguchi, A.,Nohara, Y.,Akiyama, T.,Teruya, K.,Sanjoh, A.,Nakagawa, A.,Yamashita, E.,Akaji, K. Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors Bioorg.Med.Chem. 2015 23 5626 5640 4TRZ 26264846 Structure of BACE1 complex with 2-thiophenyl HEA-type inhibitor 2014-06-18 2015-07-01 Hattori, Y.,Kobayashi, K.,Deguchi, A.,Nohara, Y.,Akiyama, T.,Teruya, K.,Sanjoh, A.,Nakagawa, A.,Yamashita, E.,Akaji, K. Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors Bioorg.Med.Chem. 2015 23 5626 5640 5AVG 22435400 The 0.95 angstrom structure of thaumatin crystallized in high-strength agarose hydrogel 2015-06-16 2015-07-08 Sugiyama, S.,Maruyama, M.,Sazaki, G.,Hirose, M.,Adachi, H.,Takano, K.,Murakami, S.,Inoue, T.,Mori, Y.,Matsumura, H. Growth of protein crystals in hydrogels prevents osmotic shock J.Am.Chem.Soc. 2012 134 5786 5789 5AVN 22435400 The 1.03 angstrom structure (P212121) of glucose isomerase crystallized in high-strength agarose hydrogel 2015-06-23 2015-07-08 Sugiyama, S.,Maruyama, M.,Sazaki, G.,Hirose, M.,Adachi, H.,Takano, K.,Murakami, S.,Inoue, T.,Mori, Y.,Matsumura, H. Growth of protein crystals in hydrogels prevents osmotic shock J.Am.Chem.Soc. 2012 134 5786 5789 4QID Crystal structure of Haloquadratum walsbyi bacteriorhodopsin 2014-05-30 2015-07-29 Wang, A.H.J.,Hsu, M.F.,Yang, C.S.,Fu, H.Y.,Cai, C.J.,Yi, H.P. An acid-tolerant light-driven proton pump To be Published 0 0 0 0 4TRY Structure of BACE1 complex with a HEA-type inhibitor 2014-06-18 2015-07-29 Akaji, K.,Teruya, K.,Akiyama, T.,Sanjho, A.,Yamashita, E.,Nakagawa, A. Structure of BACE1 complex with an anti-HMC-type inhibitor to be published 0 0 0 0 4YSX 26198225 Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with the specific inhibitor NN23 2015-03-17 2015-08-05 Inaoka, D.K.,Shiba, T.,Sato, D.,Balogun, E.O.,Sasaki, T.,Nagahama, M.,Oda, M.,Matsuoka, S.,Ohmori, J.,Honma, T.,Inoue, M.,Kita, K.,Harada, S. Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria Int J Mol Sci 2015 16 15287 15308 4YSY 26198225 Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-[(2,4-dichlorophenyl)methyl]-2-(trifluoromethyl)benzamide 2015-03-17 2015-08-05 Inaoka, D.K.,Shiba, T.,Sato, D.,Balogun, E.O.,Sasaki, T.,Nagahama, M.,Oda, M.,Matsuoka, S.,Ohmori, J.,Honma, T.,Inoue, M.,Kita, K.,Harada, S. Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria Int J Mol Sci 2015 16 15287 15308 4YTM 26198225 Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-biphenyl-3-yl-2-(trifluoromethyl)benzamide 2015-03-18 2015-08-05 Inaoka, D.K.,Shiba, T.,Sato, D.,Balogun, E.O.,Sasaki, T.,Nagahama, M.,Oda, M.,Matsuoka, S.,Ohmori, J.,Honma, T.,Inoue, M.,Kita, K.,Harada, S. 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Bioorg.Med.Chem.Lett. 2015 25 4441 4446 5AUR 26451671 Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region 2015-06-08 2015-10-21 Ren, C.,Nagao, S.,Yamanaka, M.,Komori, H.,Shomura, Y.,Higuchi, Y.,Hirota, S. Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop. Mol Biosyst 2015 11 3218 3221 5D94 26468287 Crystal structure of LC3-LIR peptide complex 2015-08-18 2015-10-21 Olsvik, H.L.,Lamark, T.,Takagi, K.,Larsen, K.B.,Evjen, G.,vervatn, A.,Mizushima, T.,Johansen, T. 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Structural Basis for Heme Recognition by HmuT Responsible for Heme Transport to the Heme Transporter in Corynebacterium glutamicum Chem Lett. 2015 0 0 0 4WLE Crystal structure of citrate bound MDH2 2014-10-07 2015-11-25 Eo, Y.M.,Han, B.G.,Ahn, H.C. Crystal structure of citrate bound MDH2 To Be Published 0 0 0 0 5E8D 26627827 Crystal structure of human epiregulin in complex with the Fab fragment of murine monoclonal antibody 9E5 2015-10-14 2015-12-09 Kado, Y.,Mizohata, E.,Nagatoishi, S.,Iijima, M.,Shinoda, K.,Miyafusa, T.,Nakayama, T.,Yoshizumi, T.,Sugiyama, A.,Kawamura, T.,Lee, Y.H.,Matsumura, H.,Doi, H.,Fujitani, H.,Kodama, T.,Shibasaki, Y.,Tsumoto, K.,Inoue, T. Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES J.Biol.Chem. 2016 291 2319 2330 5AYH 26585405 Structure of the entire dynein stalk region 2015-08-21 2015-12-16 Nishikawa, Y.,Inatomi, M.,Iwasaki, H.,Kurisu, G. 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Crystal structure of an antigenic outer-membrane protein from Salmonella Typhi suggests a potential antigenic loop and an efflux mechanism. Sci Rep 2015 5 16441 16441 5EK2 26642377 Crystal structure of the indoleamine 2,3-dioxygenagse 1 (IDO1) complexed with NLG919 analogue 2015-11-03 2015-12-23 Peng, Y.H.,Ueng, S.H.,Tseng, C.T.,Hung, M.S.,Song, J.S.,Wu, J.S.,Liao, F.Y.,Fan, Y.S.,Wu, M.H.,Hsiao, W.C.,Hsueh, C.C.,Lin, S.Y.,Cheng, C.Y.,Tu, C.H.,Lee, L.C.,Cheng, M.F.,Shia, K.S.,Shih, C.,Wu, S.Y. 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Crystal structures of spleen tyrosine kinase in complex with novel inhibitors: structural insights for design of anticancer drugs Febs J. 2016 283 3613 3625 4YMY Crystal structure of mutant nitrobindin M75A/H76L/Q96C/M148L/H158A (NB11) from Arabidopsis thaliana 2015-03-08 2015-12-30 Sauer, D.F.,Himiyama, T.,Tachikawa, K.,Fukumoto, K.,Onoda, A.,Mizohata, E.,Inoue, T.,Bocola, M.,Schwaneberg, U.,Hayashi, T.,Okuda, J. A Highly Active Biohybrid Catalyst for Olefin Metathesis in Water: Impact of a Hydrophobic Cavity in a beta-Barrel Protein Acs Catalysis 2015 5 7519 7522 5AZ9 26694222 Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond 2015-09-27 2016-01-13 Matsuoka, R.,Shimada, A.,Komuro, Y.,Sugita, Y.,Kohda, D. Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci. 2016 25 754 768 5COK 26581995 X-ray crystal structure of wild type HIV-1 protease in complex with GRL-0476 2015-07-20 2016-01-13 Aoki, M.,Hayashi, H.,Yedidi, R.S.,Martyr, C.D.,Takamatsu, Y.,Aoki-Ogata, H.,Nakamura, T.,Nakata, H.,Das, D.,Yamagata, Y.,Ghosh, A.K.,Mitsuya, H. C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir. J.Virol. 2015 90 2180 2194 5CON 26581995 X-ray crystal structure of wild type HIV-1 protease in complex with GRL-015 2015-07-20 2016-01-13 Aoki, M.,Hayashi, H.,Yedidi, R.S.,Martyr, C.D.,Takamatsu, Y.,Aoki-Ogata, H.,Nakamura, T.,Nakata, H.,Das, D.,Yamagata, Y.,Ghosh, A.K.,Mitsuya, H. C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir. 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Structure of CO-bound fully reduced state of bovine heart cytochrome c oxidase To Be Published 0 0 0 0 7CP5 34274318 Bovine heart cytochrome c oxidase in a catalytic intermediate of E at 1.76 angstrom resolution 2020-08-06 2021-07-21 Shimada, A.,Hara, F.,Shinzawa-Itoh, K.,Kanehisa, N.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates. J.Biol.Chem. 2021 297 100967 100967 7D5W 34274318 Bovine heart cytochrome c oxidase in a catalytic intermediate of O at 1.84 angstrom resolution 2020-09-28 2021-07-21 Shimada, A.,Hara, F.,Shinzawa-Itoh, K.,Kanehisa, N.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates. J.Biol.Chem. 2021 297 100967 100967 7D5X 34274318 Bovine heart cytochrome c oxidase in a catalytic intermediate, IO10, at 1.74 angstrom resolution 2020-09-28 2021-07-21 Shimada, A.,Hara, F.,Shinzawa-Itoh, K.,Kanehisa, N.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates. J.Biol.Chem. 2021 297 100967 100967 7F3G 34445192 Crystal structure of DCLK1 kinase domain in complex with ruxolitinib 2021-06-16 2021-08-18 Jang, D.M.,Lim, H.J.,Hahn, H.,Lee, Y.,Kim, H.K.,Kim, H.S. Structural Basis of Inhibition of DCLK1 by Ruxolitinib. Int J Mol Sci 2021 22 0 0 7CZ9 34518546 Crystal structure of multidrug efflux transporter OqxB from Klebsiella pneumoniae 2020-09-07 2021-09-22 Bharatham, N.,Bhowmik, P.,Aoki, M.,Okada, U.,Sharma, S.,Yamashita, E.,Shanbhag, A.P.,Rajagopal, S.,Thomas, T.,Sarma, M.,Narjari, R.,Nagaraj, S.,Ramachandran, V.,Katagihallimath, N.,Datta, S.,Murakami, S. Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae. Nat Commun 2021 12 5400 5400 7DVS 33850260 Crystal structure of Apo (heme-free) PefR 2021-01-15 2021-09-29 Nishinaga, M.,Sugimoto, H.,Nishitani, Y.,Nagai, S.,Nagatoishi, S.,Muraki, N.,Tosha, T.,Tsumoto, K.,Aono, S.,Shiro, Y.,Sawai, H. Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol 2021 4 467 467 7DBT 35643424 Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Mn2+-bound form) 2020-10-21 2021-10-06 Yoshida, Y.,Satoh, T.,Ota, C.,Tanaka, S.,Horikawa, D.D.,Tomita, M.,Kato, K.,Arakawa, K. Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades. Bmc Genomics 2022 23 405 405 7AKT CrPetF variant - A39G_A41V 2020-10-02 2021-10-13 Engelbrecht, V.,Hemschemeier, A.,Heghmanns, M.,Thomsen, J.,Rutz, A.,Yadav, S.,Ohnishi, Y.,Apfel, U.-P.,Kasanmascheff, M.,Kurisu, G.,Happe, T. Ferredoxin 2.0: an electron transfer protein designed into a photosystem I-driven hydrogenase To Be Published 0 0 0 0 7FBW 34726178 Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis 2021-07-13 2021-10-27 Sasamoto, K.,Himiyama, T.,Moriyoshi, K.,Ohmoto, T.,Uegaki, K.,Nishiya, Y.,Nakamura, T. Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis. Acta Crystallogr.,Sect.F 2021 77 399 406 7DKB 33846449 Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr 2020-11-23 2021-11-03 Nakamura, A.,Suzuki, Y.,Sakamoto, Y.,Roppongi, S.,Kushibiki, C.,Yonezawa, N.,Takahashi, M.,Shida, Y.,Gouda, H.,Nonaka, T.,Tanaka, N.,Ogasawara, W. Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep 2021 11 7929 7929 7DKC 33846449 Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr 2020-11-23 2021-11-03 Nakamura, A.,Suzuki, Y.,Sakamoto, Y.,Roppongi, S.,Kushibiki, C.,Yonezawa, N.,Takahashi, M.,Shida, Y.,Gouda, H.,Nonaka, T.,Tanaka, N.,Ogasawara, W. Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep 2021 11 7929 7929 7DKD 33846449 Stenotrophomonas maltophilia DPP7 in complex with Asn-Tyr 2020-11-23 2021-11-03 Nakamura, A.,Suzuki, Y.,Sakamoto, Y.,Roppongi, S.,Kushibiki, C.,Yonezawa, N.,Takahashi, M.,Shida, Y.,Gouda, H.,Nonaka, T.,Tanaka, N.,Ogasawara, W. Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep 2021 11 7929 7929 7DKE 33846449 Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr 2020-11-23 2021-11-03 Nakamura, A.,Suzuki, Y.,Sakamoto, Y.,Roppongi, S.,Kushibiki, C.,Yonezawa, N.,Takahashi, M.,Shida, Y.,Gouda, H.,Nonaka, T.,Tanaka, N.,Ogasawara, W. Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep 2021 11 7929 7929 7EVT 34726182 Crystal structure of the N-terminal degron-truncated human glutamine synthetase 2021-05-22 2021-11-10 Chek, M.F.,Kim, S.Y.,Mori, T.,Kojima, H.,Hakoshima, T. Crystal structure of N-terminal degron-truncated human glutamine synthetase. Acta Crystallogr.,Sect.F 2021 77 427 434 7EUX 34757797 Crystal structure of the Lon-like protease MtaLonC with D581A mutation in complex with substrate polypeptide 2021-05-19 2021-11-24 Li, S.,Hsieh, K.Y.,Kuo, C.I.,Su, S.C.,Huang, K.F.,Zhang, K.,Chang, C.I. Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex. Sci Adv 2021 7 0 0 7EUY 34757797 Crystal structure of the Lon-like protease MtaLonC with D582A mutation in complex with substrate polypeptide 2021-05-19 2021-11-24 Li, S.,Hsieh, K.Y.,Kuo, C.I.,Su, S.C.,Huang, K.F.,Zhang, K.,Chang, C.I. Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex. Sci Adv 2021 7 0 0 7EV4 34757797 Crystal structure of the Lon-like protease MtaLonC with S582A mutation in complex with F-b20-Q 2021-05-20 2021-11-24 Li, S.,Hsieh, K.Y.,Kuo, C.I.,Su, S.C.,Huang, K.F.,Zhang, K.,Chang, C.I. Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex. Sci Adv 2021 7 0 0 7EV6 34757797 Crystal structure of the Lon-like protease MtaLonC with D581A mutation in complex with F-b20-Q 2021-05-20 2021-11-24 Li, S.,Hsieh, K.Y.,Kuo, C.I.,Su, S.C.,Huang, K.F.,Zhang, K.,Chang, C.I. Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex. Sci Adv 2021 7 0 0 7DMM Structure of a glucose isomerase crystal grown in an aqueous glycerol solution without any precipitants 2020-12-04 2021-12-08 Suzuki, Y.,Ikemitsu, N.,Maita, N. Extraordinarily fast growth of high-quality glucose isomerase crystals simply by concentration in a precipitant-free solution with a cryoprotectant To be published 0 0 0 0 7W3W 34884815 X-ray structure of apo-VmFbpA, a ferric ion-binding protein from Vibrio metschnikovii 2021-11-26 2021-12-15 Lu, P.,Sui, M.,Zhang, M.,Wang, M.,Kamiya, T.,Okamoto, K.,Itoh, H.,Okuda, S.,Suzuki, M.,Asakura, T.,Fujiwara, T.,Nagata, K. Rosmarinic Acid and Sodium Citrate Have a Synergistic Bacteriostatic Effect against Vibrio Species by Inhibiting Iron Uptake. Int J Mol Sci 2021 22 0 0 7EOX 34967474 Protease structure from Euphorbia resinifera 2021-04-24 2022-01-12 Siritapetawee, J.,Attarataya, J.,Charoenwattanasatien, R. Sequence analysis and crystal structure of a glycosylated protease from Euphorbia resinifera latex for its proteolytic activity aspect. Biotechnol Appl Biochem 2022 69 2580 2591 7VXQ 35102895 The Carbon Monoxide Complex of [NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 2021-11-13 2022-02-09 Imanishi, T.,Nishikawa, K.,Taketa, M.,Higuchi, K.,Tai, H.,Hirota, S.,Hojo, H.,Kawakami, T.,Hataguchi, K.,Matsumoto, K.,Ogata, H.,Higuchi, Y. Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77. Acta Crystallogr.,Sect.F 2022 78 66 74 7E3N Crystal structure of Isocitrate dehydrogenase D252N mutant from Trypanosoma brucei in complexed with NADP+, alpha-ketoglutarate, and ca2+ 2021-02-09 2022-02-16 Arai, N.,Shiba, T.,Inaoka, D.K.,Kita, K.,Wang, X.,Otani, M.,Matsushiro, S.,Kojima, C. Crystal structure of Isocitrate dehydrogenase from Trypanosoma brucei. To Be Published 0 0 0 0 7E3Y Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with cysteine 2021-02-09 2022-02-16 Momitani, K.,Shiba, T.,Sawa, T.,Ono, K.,Hurukawa, S. Crystal structure of serine acetyltransferase from Salmonella typhimurium To Be Published 0 0 0 0 7EWJ 35141752 Toxin-antitoxin complex from Staphylococcus aureus 2021-05-25 2022-02-16 Kim, D.H.,Kang, S.M.,Baek, S.M.,Yoon, H.J.,Jang, D.M.,Kim, H.S.,Lee, S.J.,Lee, B.J. Role of PemI in the Staphylococcus aureus PemIK toxin-antitoxin complex: PemI controls PemK by acting as a PemK loop mimic. Nucleic Acids Res. 2022 50 2319 2333 7WB3 35163512 Crystal structure of T. maritima Rex in ternary complex 2021-12-15 2022-02-16 Jeong, K.H.,Lee, H.J.,Park, Y.W.,Lee, J.Y. Structural Basis of Redox-Sensing Transcriptional Repressor Rex with Cofactor NAD + and Operator DNA. Int J Mol Sci 2022 23 0 0 7W5O 35063772 Crystal structure of ERK2 with an allosteric inhibitor 2021-11-30 2022-02-23 Yoshida, M.,Nagao, H.,Sugiyama, H.,Sawa, M.,Kinoshita, T. Identification of a novel target site for ATP-independent ERK2 inhibitors. Biochem.Biophys.Res.Commun. 2022 593 73 78 7VEJ 35234151 Crystal structure of Phytolacca americana UGT3 with kaempferol and UDP-2fluoroglucose 2021-09-09 2022-03-02 Maharjan, R.,Fukuda, Y.,Nakayama, T.,Nakayama, T.,Hamada, H.,Ozaki, S.I.,Inoue, T. Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. Acta Crystallogr D Struct Biol 2022 78 379 389 7VEK 35234151 Crystal structure of Phytolacca americana UGT3 with capsaicin and UDP-2fluoroglucose 2021-09-09 2022-03-02 Maharjan, R.,Fukuda, Y.,Nakayama, T.,Nakayama, T.,Hamada, H.,Ozaki, S.I.,Inoue, T. Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. Acta Crystallogr D Struct Biol 2022 78 379 389 7VEL 35234151 Crystal structure of Phytolacca americana UGT3 with UDP-2fluoroglucose 2021-09-09 2022-03-02 Maharjan, R.,Fukuda, Y.,Nakayama, T.,Nakayama, T.,Hamada, H.,Ozaki, S.I.,Inoue, T. Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. Acta Crystallogr D Struct Biol 2022 78 379 389 7EAP 35717558 Crystal structure of IpeA-XXXG complex 2021-03-08 2022-03-16 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Structural basis for the catalytic mechanism of the glycoside hydrolase family 3 isoprimeverose-producing oligoxyloglucan hydrolase from Aspergillus oryzae. Febs Lett. 2022 596 1944 1954 7EDB EcoT38I restriction endonuclease complexed with DNA 2021-03-15 2022-03-16 Kita, K.,Mikami, B. Structural analysis of EcoT38I restriction endonuclease To Be Published 0 0 0 0 7F20 34214876 L-lactate oxidase with L-lactate 2021-06-10 2022-03-23 Furubayashi, N.,Inaka, K.,Kamo, M.,Umena, Y.,Matsuoka, T.,Morimoto, Y. Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun. 2021 568 131 135 7F21 34214876 L-lactate oxidase with D-lactate 2021-06-10 2022-03-23 Furubayashi, N.,Inaka, K.,Kamo, M.,Umena, Y.,Matsuoka, T.,Morimoto, Y. Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun. 2021 568 131 135 7F22 34214876 L-lactate oxidase with pyruvate 2021-06-10 2022-03-23 Furubayashi, N.,Inaka, K.,Kamo, M.,Umena, Y.,Matsuoka, T.,Morimoto, Y. Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun. 2021 568 131 135 7X8V 35577789 Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity 2022-03-15 2022-04-06 Ichimaru, K.,Yamaguchi, K.,Harada, K.,Nishio, Y.,Hori, M.,Ishikawa, K.,Inoue, H.,Shigeta, S.,Inoue, K.,Shimada, K.,Yoshimura, S.,Takeda, T.,Yamashita, E.,Fujiwara, T.,Nakagawa, A.,Kojima, C.,Kawasaki, T. Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity. Nat Commun 2022 13 2397 2397 7CAO 35481635 Crystal structure of red chromoprotein from Olindias formosa 2020-06-09 2022-04-20 Zhai, L.,Nakashima, R.,Shinoda, H.,Ike, Y.,Matsuda, T.,Nagai, T. Structure-based analysis and evolution of a monomerized red-colored chromoprotein from the Olindias formosa jellyfish. Protein Sci. 2022 31 0 0 7F1U 34953671 Crystal structure of Pseudomonas putida methionine gamma-lyase Q349S mutant with L-methionine intermediates 2021-06-09 2022-04-20 Okawa, A.,Handa, H.,Yasuda, E.,Murota, M.,Kudo, D.,Tamura, T.,Shiba, T.,Inagaki, K. Characterization and application of l-methionine gamma-lyase Q349S mutant enzyme with an enhanced activity toward l-homocysteine. J.Biosci.Bioeng. 2022 133 213 221 7F1V 34953671 Crystal structure of Pseudomonas putida methionine gamma-lyase Q349S mutant with L-homocysteine intermediates 2021-06-09 2022-04-20 Okawa, A.,Handa, H.,Yasuda, E.,Murota, M.,Kudo, D.,Tamura, T.,Shiba, T.,Inagaki, K. Characterization and application of l-methionine gamma-lyase Q349S mutant enzyme with an enhanced activity toward l-homocysteine. J.Biosci.Bioeng. 2022 133 213 221 7DXQ 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-20 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7DY2 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-20 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7DYI 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-21 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7DYJ 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-22 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7DYK 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-22 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7F2Y 35272237 Crystal structure of OxdB E85A mutant (form I) 2021-06-15 2022-04-27 Matsui, D.,Muraki, N.,Chen, K.,Mori, T.,Ingram, A.A.,Oike, K.,Groger, H.,Aono, S.,Asano, Y. Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization. J.Inorg.Biochem. 2022 230 111770 111770 7F2Z 35272237 Crystal structure of OxdB E85A mutant (form II) 2021-06-15 2022-04-27 Matsui, D.,Muraki, N.,Chen, K.,Mori, T.,Ingram, A.A.,Oike, K.,Groger, H.,Aono, S.,Asano, Y. Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization. J.Inorg.Biochem. 2022 230 111770 111770 7F30 35272237 Crystal structure of OxdB E85A in complex with Z-2- (3-bromophenyl) propanal oxime 2021-06-15 2022-04-27 Matsui, D.,Muraki, N.,Chen, K.,Mori, T.,Ingram, A.A.,Oike, K.,Groger, H.,Aono, S.,Asano, Y. Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization. J.Inorg.Biochem. 2022 230 111770 111770 7V3X 35427168 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-08-11 2022-04-27 Furuike, Y.,Mukaiyama, A.,Ouyang, D.,Ito-Miwa, K.,Simon, D.,Yamashita, E.,Kondo, T.,Akiyama, S. Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria. Sci Adv 2022 8 0 0 7W1R 35481630 Crystal structure of human Suv3 monomer 2021-11-20 2022-05-11 Jain, M.,Golzarroshan, B.,Lin, C.L.,Agrawal, S.,Tang, W.H.,Wu, C.J.,Yuan, H.S. Dimeric assembly of human Suv3 helicase promotes its RNA unwinding function in mitochondrial RNA degradosome for RNA decay. Protein Sci. 2022 31 0 0 7DY1 35507871 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-20 2022-05-18 Furuike, Y.,Mukaiyama, A.,Koda, S.I.,Simon, D.,Ouyang, D.,Ito-Miwa, K.,Saito, S.,Yamashita, E.,Nishiwaki-Ohkawa, T.,Terauchi, K.,Kondo, T.,Akiyama, S. Regulation mechanisms of the dual ATPase in KaiC. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7DYE 35507871 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-01-21 2022-05-18 Furuike, Y.,Mukaiyama, A.,Koda, S.I.,Simon, D.,Ouyang, D.,Ito-Miwa, K.,Saito, S.,Yamashita, E.,Nishiwaki-Ohkawa, T.,Terauchi, K.,Kondo, T.,Akiyama, S. Regulation mechanisms of the dual ATPase in KaiC. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7ETP Crystal structure of Pro-Phe-Leu-Phe 2021-05-13 2022-05-18 Kurumida, Y.,Ikeda, K.,Nakamichi, Y.,Hirano, A.,Kobayashi, K.,Saito, Y.,Kameda, T. Crystal structure of Pro-Phe-Leu-Phe To Be Published 0 0 0 0 7ETQ Crystal structure of Pro-Met-Leu-Leu 2021-05-13 2022-05-18 Kurumida, Y.,Ikeda, K.,Nakamichi, Y.,Hirano, A.,Kobayashi, K.,Saito, Y.,Kameda, T. Crystal structure of Pro-Met-Leu-Leu To Be Published 0 0 0 0 7EUL 35634777 Crystal structure of C86H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase 2021-05-18 2022-05-18 Oda, K.,Sakaguchi, T.,Matoba, Y. Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor. Protein Sci. 2022 31 0 0 7EUN 35634777 Crystal structure of N(omega)-hydroxy-L-arginine hydrolase in complex with ABH 2021-05-18 2022-05-18 Oda, K.,Sakaguchi, T.,Matoba, Y. Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor. Protein Sci. 2022 31 0 0 7EUQ 35634777 Crystal structure of C86H-Y124N-G126H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase 2021-05-18 2022-05-18 Oda, K.,Sakaguchi, T.,Matoba, Y. Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor. Protein Sci. 2022 31 0 0 7W1D 35130876 Crystal structure of Klebsiella pneumoniae K1 capsule-specific polysaccharide lyase in a C2 crystal form 2021-11-19 2022-05-18 Tu, I.F.,Lin, T.L.,Yang, F.L.,Lee, I.M.,Tu, W.L.,Liao, J.H.,Ko, T.P.,Wu, W.J.,Jan, J.T.,Ho, M.R.,Chou, C.Y.,Wang, A.H.,Wu, C.Y.,Wang, J.T.,Huang, K.F.,Wu, S.H. Structural and biological insights into Klebsiella pneumoniae surface polysaccharide degradation by a bacteriophage K1 lyase: implications for clinical use. J.Biomed.Sci. 2022 29 9 9 7ETN Crystal structure of Pro-Phe-Leu-Ile 2021-05-13 2022-05-25 Kurumida, Y.,Ikeda, K.,Nakamichi, Y.,Hirano, A.,Kobayashi, K.,Saito, Y.,Kameda, T. Crystal structure of Pro-Phe-Leu-Ile To Be Published 0 0 0 0 7EUW X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing 4-[2-[1-(4-bromophenyl)-5-phenyl-1H-pyrazol-3-yl]phenoxy] (HA174) 2021-05-19 2022-05-25 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of the human heart fatty acid-binding protein complexed with 4-[2-[1-(4-bromophenyl)-5-phenyl-1H-pyrazol-3-yl]phenoxy] (HA176) To Be Published 0 0 0 0 7WW7 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1 hr in 5 mM Mn2+ 2022-02-12 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7X9H 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 9 hr using 5 mM Mn2+ 2022-03-15 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7F1Y 34214876 L-lactate oxidase without substrate 2021-06-10 2022-06-15 Furubayashi, N.,Inaka, K.,Kamo, M.,Umena, Y.,Matsuoka, T.,Morimoto, Y. Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun. 2021 568 131 135 7XIF Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) alone or together with spermidine or thermospermine 2022-04-13 2022-06-15 Fukuda, W.,Osaki, M.,Yasuda, Y.,Hidese, R.,Higuchi, T.,Umezawa, N.,Fujiwara, S.,Mizohata, E. Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts 2022 12 0 0 7XIG Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) and spermine 2022-04-13 2022-06-15 Fukuda, W.,Osaki, M.,Yasuda, Y.,Hidese, R.,Higuchi, T.,Umezawa, N.,Fujiwara, S.,Mizohata, E. Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts 2022 12 0 0 7XIH Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) and spermidine 2022-04-13 2022-06-15 Fukuda, W.,Osaki, M.,Yasuda, Y.,Hidese, R.,Higuchi, T.,Umezawa, N.,Fujiwara, S.,Mizohata, E. Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts 2022 12 0 0 7XII Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) & aminopropylagmatine 2022-04-13 2022-06-15 Fukuda, W.,Osaki, M.,Yasuda, Y.,Hidese, R.,Higuchi, T.,Umezawa, N.,Fujiwara, S.,Mizohata, E. Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts 2022 12 0 0 7FBF The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with octanoic acid 2021-07-09 2022-07-13 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with octanoic acid To Be Published 0 0 0 0 7FC4 X-ray structure of the human heart fatty acid-binding protein complexed with S-Ibuprofen 2021-07-13 2022-07-13 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing dibutylhydroxytoluene (BHT) To Be Published 0 0 0 0 7FCG X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing Indometacin 2021-07-14 2022-07-20 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing Indometacin To Be Published 0 0 0 0 7FDT The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with elaidic acid 2021-07-17 2022-07-20 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with octanoic acid To Be Published 0 0 0 0 7FDU The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heptadecanoic acid 2021-07-18 2022-07-20 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heptadecanoic acid To Be Published 0 0 0 0 7FDX X-ray structure of the human heart fatty acid-binding protein complexed with the fluorescent probe 8-Anilino-1-naphthalenesulfonic acid (ANS) 2021-07-18 2022-07-20 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of the human heart fatty acid-binding protein complexed with the fluorescent probe 8-Anilino-1-naphthalenesulfonic acid (ANS) To Be Published 0 0 0 0 7VPY 35794202 Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2 2021-10-18 2022-07-20 Maeda, R.,Fujita, J.,Konishi, Y.,Kazuma, Y.,Yamazaki, H.,Anzai, I.,Watanabe, T.,Yamaguchi, K.,Kasai, K.,Nagata, K.,Yamaoka, Y.,Miyakawa, K.,Ryo, A.,Shirakawa, K.,Sato, K.,Makino, F.,Matsuura, Y.,Inoue, T.,Imura, A.,Namba, K.,Takaori-Kondo, A. A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol 2022 5 669 669 7WDC 35771042 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2021-12-21 2022-07-20 Mukaiyama, A.,Furuike, Y.,Yamashita, E.,Akiyama, S. Highly sensitive tryptophan fluorescence probe for detecting rhythmic conformational changes of KaiC in the cyanobacterial circadian clock system. Biochem.J. 2022 479 1505 1515 7XBQ 35804047 Crystal structure of potato 14-3-3 protein St14f 2022-03-21 2022-07-20 Harada, K.I.,Furuita, K.,Yamashita, E.,Taoka, K.I.,Tsuji, H.,Fujiwara, T.,Nakagawa, A.,Kojima, C. Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition. Sci Rep 2022 12 11596 11596 7FEZ The 0.76 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with petroselinic acid 2021-07-22 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.76 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with petroselinic acid To Be Published 0 0 0 0 7FF6 The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with cis-vaccenic acid 2021-07-22 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with cis-vaccenic acid To Be Published 0 0 0 0 7FFK The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitoleic acid 2021-07-23 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitoleic acid To Be Published 0 0 0 0 7FG1 The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with tridecanoic acid 2021-07-25 2022-07-27 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with tridecanoic acid To Be Published 0 0 0 0 7VF3 35981535 Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide 2021-09-10 2022-08-17 Sugano-Nakamura, N.,Matoba, K.,Hirose, M.,Bashiruddin, N.K.,Matsunaga, Y.,Yamashita, K.,Hirata, K.,Yamamoto, M.,Arimori, T.,Suga, H.,Takagi, J. De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure 2022 30 1411 0 7V5U The 0.92 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with 2-cyclohexadecylacetic acid (CYC16AA) 2021-08-18 2022-08-24 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.92 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with 2-cyclohexadecylacetic acid (CYC16AA) To Be Published 0 0 0 0 7FGP Crystal structure of Aureimonas altamirenisis flavin-containing opine dehydrogenase (FAD-bound form) 2021-07-27 2022-08-31 Yoshiwara, K.,Watanabe, S.,Watanabe, Y. Structural basis for Flavin-containing opine dehydrogenase from Aureimonas altamirensis To Be Published 0 0 0 0 7VB1 The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with trans-vaccenic acid 2021-08-30 2022-09-07 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with trans-vaccenic acid To Be Published 0 0 0 0 7X7X 36061730 Human serum albumin complex with deschloro-aripiprazole 2022-03-10 2022-09-07 Kawai, A.,Kobashigawa, Y.,Hirata, K.,Morioka, H.,Imoto, S.,Nishi, K.,Chuang, V.T.G.,Yamasaki, K.,Otagiri, M. Chlorine Atoms of an Aripiprazole Molecule Control the Geometry and Motion of Aripiprazole and Deschloro-aripiprazole in Subdomain IIIA of Human Serum Albumin. Acs Omega 2022 7 29944 29951 7YPY 27605664 Bovine heart cytochrome c oxidase in fully oxidized state at 1.5 angstrom resolution 2022-08-05 2022-09-21 Yano, N.,Muramoto, K.,Shimada, A.,Shinzawa-Itoh, K.,Tsukihara, T.,Yoshikawa, S. The Mg2+-containing water cluster of mammalian cytochrome c oxidase collects four pumping proton equivalents in each catalytic cycle. J. Biol. Chem. 2016 291 23882 23894 7X1L 36208218 Malate dehydrogenase from Geobacillus stearothermophilus (gs-MDH) delta E311 mutant complexed with Nicotinamide Adenine Dinucleotide (NAD+) 2022-02-24 2022-10-19 Shimozawa, Y.,Matsuhisa, H.,Nakamura, T.,Himiyama, T.,Nishiya, Y. Reducing substrate inhibition of malate dehydrogenase from Geobacillus stearothermophilus by C-terminal truncation. Protein Eng.Des.Sel. 2022 35 0 0 7Y5Y 36173179 X-ray Structure of Stay-Green (SGR) from Anaerolineae bacterium. 2022-06-18 2022-10-19 Dey, D.,Nishijima, M.,Tanaka, R.,Kurisu, G.,Tanaka, H.,Ito, H. Crystal structure and reaction mechanism of a bacterial Mg-dechelatase homolog from the Chloroflexi Anaerolineae. Protein Sci. 2022 31 0 0 8GVM 30077971 The structure of azide-bound cytochrome C oxidase determined using the crystals exposed to 20 mm azide solution for 4 days 2022-09-15 2022-10-19 Shimada, A.,Hatano, K.,Tadehara, H.,Yano, N.,Sinzawa-Itoh, K.,Yamashita, E.,Mutamoto, K.,Tsukihara, T.,Yoshikawa, S. X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity J. Biol. Chem. 2018 293 14868 14879 7WJT 35574701 Crystal structure of coiled-coil region of mouse TMEM266 2022-01-07 2022-10-26 Kawai, T.,Narita, H.,Konno, K.,Akter, S.,Andriani, R.T.,Iwasaki, H.,Nishikawa, S.,Yokoi, N.,Fukata, Y.,Fukata, M.,Wiriyasermkul, P.,Kongpracha, P.,Nagamori, S.,Takao, K.,Miyakawa, T.,Abe, M.,Sakimura, K.,Watanabe, M.,Nakagawa, A.,Okamura, Y. Insight into the function of a unique voltage-sensor protein (TMEM266) and its short form in mouse cerebellum. Biochem.J. 2022 479 1127 1145 7WDO Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2022-11-02 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7WDP Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2022-11-02 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7WDR Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2022-11-02 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7WDS Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2022-11-02 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7WDV Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2022-11-02 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7VUW 37742916 Bovine heart cytochrome c oxidase in the cyanide-bound fully oxidized state at 50 K 2021-11-04 2022-11-16 Shimada, A.,Baba, J.,Nagao, S.,Shinzawa-Itoh, K.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons. J.Biol.Chem. 2023 299 105277 105277 7VVR 37742916 Bovine cytochrome c oxidese in CN-bound mixed valence state at 50 K 2021-11-08 2022-11-16 Shimada, A.,Baba, J.,Nagao, S.,Shinzawa-Itoh, K.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons. J.Biol.Chem. 2023 299 105277 105277 7VWO TA complex from Mycobacterium tuberculosis 2021-11-11 2022-11-16 Eun, H.-J.,Lee, B.-J.,Lee, J.-Y. TA complex from Mycobacterium tuberculosis To Be Published 0 0 0 0 7WIR 36320691 Holo form of N381A mutant of copper amine oxidase from Arthrobacter globiformis 2022-01-04 2022-11-16 Shoji, M.,Murakawa, T.,Nakanishi, S.,Boero, M.,Shigeta, Y.,Hayashi, H.,Okajima, T. Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase. Chem Sci 2022 13 10923 10938 7WIS 36320691 Catalytic intermediate structure of N381A mutant of copper amine oxidase from Arthrobacter globiformis 2022-01-04 2022-11-16 Shoji, M.,Murakawa, T.,Nakanishi, S.,Boero, M.,Shigeta, Y.,Hayashi, H.,Okajima, T. Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase. Chem Sci 2022 13 10923 10938 7EXH 36762861 Crystal structure of D383A mutant from Arabidopsis thaliana complexed with Galactinol. 2021-05-27 2022-11-30 Chuankhayan, P.,Lee, R.H.,Guan, H.H.,Lin, C.C.,Chen, N.C.,Huang, Y.C.,Yoshimura, M.,Nakagawa, A.,Chen, C.J. Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product. Acta Crystallogr D Struct Biol 2023 79 154 167 7EXJ 36762861 Crystal structure of alkaline alpha-galctosidase D383A mutant from Arabidopsis thaliana complexed with Raffinose 2021-05-27 2022-11-30 Chuankhayan, P.,Lee, R.H.,Guan, H.H.,Lin, C.C.,Chen, N.C.,Huang, Y.C.,Yoshimura, M.,Nakagawa, A.,Chen, C.J. Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product. Acta Crystallogr D Struct Biol 2023 79 154 167 7W3E 37742916 Bovine cytochrome c oxidese in CN-bound fully reduced state at 50 K 2021-11-25 2022-12-07 Shimada, A.,Baba, J.,Nagao, S.,Shinzawa-Itoh, K.,Yamashita, E.,Muramoto, K.,Tsukihara, T.,Yoshikawa, S. Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons. J.Biol.Chem. 2023 299 105277 105277 8GZ6 36413757 Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain 2022-09-25 2022-12-07 Yamaguchi, K.,Anzai, I.,Maeda, R.,Moriguchi, M.,Watanabe, T.,Imura, A.,Takaori-Kondo, A.,Inoue, T. Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant. J.Biochem. 2023 173 115 127 7WC3 X-ray structure of the human adipocyte fatty acid-binding protein complexed with the fluorescent probe HA728 2021-12-18 2022-12-21 Takahashi, J.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M.,Sugiyama, S. X-ray structure of the human adipocyte fatty acid-binding protein complexed with the fluorescent probe HA728 To Be Published 0 0 0 0 7WCI The 0.85 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with two molecules of pelargonic acid 2021-12-20 2022-12-21 Sugiyama, S.,Kakinouchi, K.,Takahashi, J.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.85 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with two molecules of pelargonic acid To Be Published 0 0 0 0 7WD6 The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with hexanoic acid 2021-12-21 2022-12-21 Sugiyama, S.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with hexanoic acid To Be Published 0 0 0 0 7WDJ The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with linoleic acid 2021-12-21 2022-12-21 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with linoleic acid To Be Published 0 0 0 0 7WE5 The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with oleic acid 2021-12-22 2022-12-28 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with linoleic acid To Be Published 0 0 0 0 7WDN 35723691 Crystal structures of MeBglD2 in complex with various saccharides 2021-12-22 2023-01-04 Matsuzawa, T.,Watanabe, M.,Nakamichi, Y.,Akita, H.,Yaoi, K. Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides. Appl.Microbiol.Biotechnol. 2022 106 4539 4551 7X4H 36130444 Crystal structure of CK2a1 complexed with AG1112 2022-03-02 2023-01-18 Ikeda, A.,Tsuyuguchi, M.,Kitagawa, D.,Sawa, M.,Nakamura, S.,Nakanishi, I.,Kinoshita, T. Bivalent binding mode of an amino-pyrazole inhibitor indicates the potentials for CK2 alpha 1-selective inhibitors. Biochem.Biophys.Res.Commun. 2022 630 30 35 7XYH 36130444 Crystal structure of CK2a2 complexed with AG1112 2022-06-01 2023-01-18 Ikeda, A.,Tsuyuguchi, M.,Kitagawa, D.,Sawa, M.,Nakamura, S.,Nakanishi, I.,Kinoshita, T. Bivalent binding mode of an amino-pyrazole inhibitor indicates the potentials for CK2 alpha 1-selective inhibitors. Biochem.Biophys.Res.Commun. 2022 630 30 35 7WJ1 The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with arachidonic acid 2022-01-05 2023-01-25 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with arachidonic acid To Be Published 0 0 0 0 7WKB The 0.81 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with docosahexaenoic acid 2022-01-08 2023-01-25 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.81 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with docosahexaenoic acid To Be Published 0 0 0 0 7WOM The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with eicosapentaenoic acid 2022-01-21 2023-01-25 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with eicosapentaenoic acid To Be Published 0 0 0 0 7WPG The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heptanoic acid 2022-01-23 2023-01-25 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heptanoic acid To Be Published 0 0 0 0 7WQ7 The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nonadecanoic acid 2022-01-24 2023-01-25 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nonadecanoic acid To Be Published 0 0 0 0 7YA7 36610722 The crystal structure of IpaH1.4 LRR domain 2022-06-27 2023-02-08 Hiragi, K.,Nishide, A.,Takagi, K.,Iwai, K.,Kim, M.,Mizushima, T. Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5. J.Biochem. 2023 173 317 326 7YA8 36610722 The crystal structure of IpaH2.5 LRR domain 2022-06-27 2023-02-08 Hiragi, K.,Nishide, A.,Takagi, K.,Iwai, K.,Kim, M.,Mizushima, T. Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5. J.Biochem. 2023 173 317 326 8H8R 36708913 Bovine Heart Cytochrome c Oxidase in the Calcium-bound Fully Oxidized State 2022-10-24 2023-02-08 Muramoto, K.,Shinzawa-Itoh, K. Calcium-bound structure of bovine cytochrome c oxidase. Biochim Biophys Acta Bioenerg 2023 1864 148956 148956 8H8S 36708913 Bovine Heart Cytochrome c Oxidase in the Calcium-bound Fully Reduced State 2022-10-24 2023-02-08 Muramoto, K.,Shinzawa-Itoh, K. Calcium-bound structure of bovine cytochrome c oxidase. Biochim Biophys Acta Bioenerg 2023 1864 148956 148956 7XHW 36174533 Crystal structure of metallo-beta-lactamase IMP-1 2022-04-11 2023-02-15 Yamamoto, K.,Tanaka, H.,Kurisu, G.,Nakano, R.,Yano, H.,Sakai, H. Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases. J.Biochem. 2022 173 21 30 7XHX 36174533 Crystal structure of metallo-beta-lactamase IMP-6 2022-04-11 2023-02-15 Yamamoto, K.,Tanaka, H.,Kurisu, G.,Nakano, R.,Yano, H.,Sakai, H. Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases. J.Biochem. 2022 173 21 30 7X48 The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pelargonic acid 2022-03-02 2023-03-08 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pelargonic acid To Be Published 0 0 0 0 7X4J The 0.96 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with arachidic acid 2022-03-02 2023-03-08 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.96 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with arachidic acid To Be Published 0 0 0 0 7X4U Crystal structure of ERK2 with an allosteric inhibitor 2 2022-03-03 2023-03-08 Kinoshita, T.,Yoshida, M.,Sugiyama, H. Structural basis for producing allosteric ERK2 inhibitors To Be Published 0 0 0 0 7X50 The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heneicosanoic acid 2022-03-03 2023-03-08 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heneicosanoic acid To Be Published 0 0 0 0 7X6F 37877621 Outer membrane lipoprotein QseG of Escherichia coli O157:H7 2022-03-07 2023-03-15 Matsumoto, K.,Fukuda, Y.,Inoue, T. Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli. Acta Crystallogr.,Sect.F 2023 79 285 293 7X6G 37877621 Outer membrane lipoprotein QseG of Escherichia coli O157:H7 2022-03-07 2023-03-15 Matsumoto, K.,Fukuda, Y.,Inoue, T. Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli. Acta Crystallogr.,Sect.F 2023 79 285 293 7X6H 37877621 Outer membrane lipoprotein QseG of Escherichia coli O157:H7 2022-03-07 2023-03-15 Matsumoto, K.,Fukuda, Y.,Inoue, T. Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli. Acta Crystallogr.,Sect.F 2023 79 285 293 7XC1 Crystal structure of ERK2 with an allosteric inhibitor 3 2022-03-22 2023-03-22 Yoshida, M.,Kinoshita, T. Structural basis for ERK2 allosteric inhibitors. To Be Published 0 0 0 0 8I19 36914375 Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.0 2023-01-13 2023-03-22 Nakamura, T.,Koga-Ogawa, Y.,Fujimiya, K.,Chirifu, M.,Goto, M.,Ikemizu, S.,Nakabeppu, Y.,Yamagata, Y. Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett. 2023 597 1770 1778 7XBC The 0.92 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with lignoceric acid 2022-03-21 2023-03-29 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.92 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with lignoceric acid To Be Published 0 0 0 0 7XRK 35974426 Diol dehydratase complexed with AdoMeCbl 2022-05-10 2023-03-29 Shibata, N.,Higuchi, Y.,Krautler, B.,Toraya, T. Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry 2022 28 0 0 7XRL 35974426 Diol dehydratase complexed with AdoMeCbl and 1,2-propanediol 2022-05-10 2023-03-29 Shibata, N.,Higuchi, Y.,Krautler, B.,Toraya, T. Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry 2022 28 0 0 7XRM 35974426 Ethanolamine ammonia-lyase complexed with AdoMeCbl 2022-05-10 2023-03-29 Shibata, N.,Higuchi, Y.,Krautler, B.,Toraya, T. Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry 2022 28 0 0 7YU2 36799721 Structure of 6-aminohexanoate-oligomer hydrolase NylC, D122G/H130Y/T267C mutant, hydroxylamine-treated 2022-08-16 2023-03-29 Negoro, S.,Shibata, N.,Kato, D.I.,Tanaka, Y.,Yasuhira, K.,Nagai, K.,Oshima, S.,Furuno, Y.,Yokoyama, R.,Miyazaki, K.,Takeo, M.,Hengphasatporn, K.,Shigeta, Y.,Lee, Y.H.,Higuchi, Y. X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase. Febs J. 2023 290 3400 3421 7XEL SufS soaked with D-penicillamine 2022-03-31 2023-04-05 Nakamura, R.,Takahashi, Y.,Fujishiro, T. X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published 0 0 0 0 7XEN SufS with L-penicillamine 2022-03-31 2023-04-05 Nakamura, R.,Takahashi, Y.,Fujishiro, T. X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published 0 0 0 0 7XHM The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with behenic acid 2022-04-08 2023-04-12 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with behenic acid To Be Published 0 0 0 0 7XHU The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with tricosanoic acid 2022-04-10 2023-04-12 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with tricosanoic acid To Be Published 0 0 0 0 8IJN 20385840 Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K 2023-02-27 2023-04-12 Muramoto, K.,Ohta, K.,Shinzawa-Itoh, K.,Kanda, K.,Taniguchi, M.,Nabekura, H.,Yamashita, E.,Tsukihara, T.,Yoshikawa, S. Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate. Proc.Natl.Acad.Sci.USA 2010 107 7740 7745 7WN2 37041231 Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab 2022-01-17 2023-04-19 Shitaoka, K.,Higashiura, A.,Kawano, Y.,Yamamoto, A.,Mizoguchi, Y.,Hashiguchi, T.,Nishimichi, N.,Huang, S.,Ito, A.,Ohki, S.,Kanda, M.,Taniguchi, T.,Yoshizato, R.,Azuma, H.,Kitajima, Y.,Yokosaki, Y.,Okada, S.,Sakaguchi, T.,Yasuda, T. Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol 2023 6 395 395 7WNB 37041231 Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab 2022-01-18 2023-04-19 Shitaoka, K.,Higashiura, A.,Kawano, Y.,Yamamoto, A.,Mizoguchi, Y.,Hashiguchi, T.,Nishimichi, N.,Huang, S.,Ito, A.,Ohki, S.,Kanda, M.,Taniguchi, T.,Yoshizato, R.,Azuma, H.,Kitajima, Y.,Yokosaki, Y.,Okada, S.,Sakaguchi, T.,Yasuda, T. Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol 2023 6 395 395 7YOW 37041231 Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab 2022-08-02 2023-04-19 Shitaoka, K.,Higashiura, A.,Kawano, Y.,Yamamoto, A.,Mizoguchi, Y.,Hashiguchi, T.,Nishimichi, N.,Huang, S.,Ito, A.,Ohki, S.,Kanda, M.,Taniguchi, T.,Yoshizato, R.,Azuma, H.,Kitajima, Y.,Yokosaki, Y.,Okada, S.,Sakaguchi, T.,Yasuda, T. Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol 2023 6 395 395 8I5H 37041231 Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab 2023-01-25 2023-04-19 Shitaoka, K.,Higashiura, A.,Kawano, Y.,Yamamoto, A.,Mizoguchi, Y.,Hashiguchi, T.,Nishimichi, N.,Huang, S.,Ito, A.,Ohki, S.,Kanda, M.,Taniguchi, T.,Yoshizato, R.,Azuma, H.,Kitajima, Y.,Yokosaki, Y.,Okada, S.,Sakaguchi, T.,Yasuda, T. Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol 2023 6 395 395 8I5I 37041231 Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab 2023-01-25 2023-04-19 Shitaoka, K.,Higashiura, A.,Kawano, Y.,Yamamoto, A.,Mizoguchi, Y.,Hashiguchi, T.,Nishimichi, N.,Huang, S.,Ito, A.,Ohki, S.,Kanda, M.,Taniguchi, T.,Yoshizato, R.,Azuma, H.,Kitajima, Y.,Yokosaki, Y.,Okada, S.,Sakaguchi, T.,Yasuda, T. Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol 2023 6 395 395 8GQZ 37058555 Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae 2022-08-31 2023-04-26 Nishio, K.,Kawarasaki, T.,Sugiura, Y.,Matsumoto, S.,Konoshima, A.,Takano, Y.,Hayashi, M.,Okumura, F.,Kamura, T.,Mizushima, T.,Nakatsukasa, K. Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv 2023 9 0 0 8GR8 37058555 Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae 2022-09-01 2023-04-26 Nishio, K.,Kawarasaki, T.,Sugiura, Y.,Matsumoto, S.,Konoshima, A.,Takano, Y.,Hayashi, M.,Okumura, F.,Kamura, T.,Mizushima, T.,Nakatsukasa, K. Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv 2023 9 0 0 8GR9 37058555 Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A 2022-09-01 2023-04-26 Nishio, K.,Kawarasaki, T.,Sugiura, Y.,Matsumoto, S.,Konoshima, A.,Takano, Y.,Hayashi, M.,Okumura, F.,Kamura, T.,Mizushima, T.,Nakatsukasa, K. Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv 2023 9 0 0 8GRE 37058555 F-box protein in complex with skp1(FL) and substrate 2022-09-01 2023-04-26 Nishio, K.,Kawarasaki, T.,Sugiura, Y.,Matsumoto, S.,Konoshima, A.,Takano, Y.,Hayashi, M.,Okumura, F.,Kamura, T.,Mizushima, T.,Nakatsukasa, K. Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv 2023 9 0 0 8GRF 37058555 Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate 2022-09-01 2023-04-26 Nishio, K.,Kawarasaki, T.,Sugiura, Y.,Matsumoto, S.,Konoshima, A.,Takano, Y.,Hayashi, M.,Okumura, F.,Kamura, T.,Mizushima, T.,Nakatsukasa, K. Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv 2023 9 0 0 8IC9 37047047 Lys48-linked K48C-diubiquitin 2023-02-11 2023-04-26 Hiranyakorn, M.,Yagi-Utsumi, M.,Yanaka, S.,Ohtsuka, N.,Momiyama, N.,Satoh, T.,Kato, K. Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains. Int J Mol Sci 2023 24 0 0 8IDP 37144255 Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus 2023-02-14 2023-05-17 Nakamichi, Y.,Watanabe, M.,Fujii, T.,Inoue, H.,Morita, T. Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30. Proteins 2023 91 1341 1350 8IDQ 37144255 Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose 2023-02-14 2023-05-17 Nakamichi, Y.,Watanabe, M.,Fujii, T.,Inoue, H.,Morita, T. Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30. Proteins 2023 91 1341 1350 8J79 Bovine Xanthine Oxidoreductase Crystallized with oxypurinol 2023-04-27 2023-05-24 Okamoto, K.,Sekine, M. Bovine Xanthine Oxidoreductase Crystallized with oxypurinol To Be Published 0 0 0 0 7XJV Crystal Structure of Alpha-1,3-mannosyltransferase MNT2 from Saccharomyces cerevisiae, Mn/GDP-mannose form 2022-04-18 2023-05-31 Hira, D.,Kadooka, C.,Oka, T. Crystal Structure of Alpha-1,3-mannosyltransferase MNT2 from Saccharomyces cerevisiae, Mn/GDP-mannose form To Be Published 0 0 0 0 7XWD Apo-AtPRT6 UBR box 2022-05-26 2023-05-31 Kim, L.,Lin, C.C.,Lin, T.J.,Cao, Y.C.,Chen, M.C.,Chou, M.Y.,Lin, W.H.,Kim, M.,Wu, J.L.,Shih, M.C.,Song, H.K.,Ho, M.C. Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published 0 0 0 0 8HAP 37227376 Crystal structure of thermostable acetaldehyde dehydrogenase from hyperthermophilic archaeon Sulfolobus tokodaii 2022-10-26 2023-06-07 Mine, S.,Nakabayashi, M.,Ishikawa, K. Crystal structure of thermostable acetaldehyde dehydrogenase from the hyperthermophilic archaeon Sulfolobus tokodaii. Acta Crystallogr.,Sect.F 2023 79 159 165 8H2U 37270022 X-ray Structure of photosystem I-LHCI super complex from Chlamydomonas reinhardtii. 2022-10-07 2023-06-14 Gerle, C.,Misumi, Y.,Kawamoto, A.,Tanaka, H.,Kubota-Kawai, H.,Tokutsu, R.,Kim, E.,Chorev, D.,Abe, K.,Robinson, C.V.,Mitsuoka, K.,Minagawa, J.,Kurisu, G. Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin. Biochim Biophys Acta Bioenerg 2023 1864 148986 148986 8HJX 37035687 Crystal structure of a cupin protein (tm1459, H52A/H58E mutant) in copper (Cu) substituted form 2022-11-24 2023-06-14 Matsumoto, R.,Yoshioka, S.,Yuasa, M.,Morita, Y.,Kurisu, G.,Fujieda, N. An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition. Chem Sci 2023 14 3932 3937 8HJY 37035687 Crystal structure of a cupin protein (tm1459, H52A/H58E/F104W mutant) in copper (Cu) substituted form 2022-11-24 2023-06-14 Matsumoto, R.,Yoshioka, S.,Yuasa, M.,Morita, Y.,Kurisu, G.,Fujieda, N. An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition. Chem Sci 2023 14 3932 3937 8HJZ 37035687 Crystal structure of a cupin protein (tm1459, H52A/H58Q mutant) in copper (Cu) substituted form 2022-11-24 2023-06-14 Matsumoto, R.,Yoshioka, S.,Yuasa, M.,Morita, Y.,Kurisu, G.,Fujieda, N. An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition. Chem Sci 2023 14 3932 3937 8IAS 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8IAT 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8IAU 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8IAV 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with fructose 1,6-bisphosphate 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8IAW 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8IAX 37286036 Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate and fructose 1,6-bisphosphate 2023-02-09 2023-06-14 Taguchi, A.,Nakashima, R.,Nishino, K. Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. 2023 299 104892 104892 8HN2 37180033 Selenomethionine-labelled soluble domain of Rieske iron-sulfur protein from chlorobaculum tepidum 2022-12-07 2023-07-05 Kishimoto, H.,Azai, C.,Yamamoto, T.,Mutoh, R.,Nakaniwa, T.,Tanaka, H.,Miyanoiri, Y.,Kurisu, G.,Oh-Oka, H. Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis. Curr Res Struct Biol 2023 5 100101 100101 8HN3 37180033 Soluble domain of cytochrome c-556 from Chlorobaculum tepidum 2022-12-07 2023-07-05 Kishimoto, H.,Azai, C.,Yamamoto, T.,Mutoh, R.,Nakaniwa, T.,Tanaka, H.,Miyanoiri, Y.,Kurisu, G.,Oh-Oka, H. Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis. Curr Res Struct Biol 2023 5 100101 100101 7WLS 37428905 Crystal structure of the multidrug efflux transporter BpeB from Burkholderia pseudomallei 2022-01-13 2023-07-19 Kato, T.,Okada, U.,Hung, L.W.,Yamashita, E.,Kim, H.B.,Kim, C.Y.,Terwilliger, T.C.,Schweizer, H.P.,Murakami, S. Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proc.Natl.Acad.Sci.USA 2023 120 0 0 7WLV 37428905 Crystal Structure of the Multidrug effulx transporter BpeF from Burkholderia pseudomallei. 2022-01-13 2023-07-19 Kato, T.,Okada, U.,Hung, L.W.,Yamashita, E.,Kim, H.B.,Kim, C.Y.,Terwilliger, T.C.,Schweizer, H.P.,Murakami, S. Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8GZV 37429870 Klebsiella pneumoniae FtsZ complexed with monobody (P212121) 2022-09-27 2023-07-19 Fujita, J.,Amesaka, H.,Yoshizawa, T.,Hibino, K.,Kamimura, N.,Kuroda, N.,Konishi, T.,Kato, Y.,Hara, M.,Inoue, T.,Namba, K.,Tanaka, S.I.,Matsumura, H. Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun 2023 14 4073 4073 8GZW 37429870 Klebsiella pneumoniae FtsZ complexed with monobody (P21) 2022-09-27 2023-07-19 Fujita, J.,Amesaka, H.,Yoshizawa, T.,Hibino, K.,Kamimura, N.,Kuroda, N.,Konishi, T.,Kato, Y.,Hara, M.,Inoue, T.,Namba, K.,Tanaka, S.I.,Matsumura, H. Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun 2023 14 4073 4073 8GZX 37429870 Escherichia coli FtsZ complexed with monobody (P212121) 2022-09-27 2023-07-19 Fujita, J.,Amesaka, H.,Yoshizawa, T.,Hibino, K.,Kamimura, N.,Kuroda, N.,Konishi, T.,Kato, Y.,Hara, M.,Inoue, T.,Namba, K.,Tanaka, S.I.,Matsumura, H. Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun 2023 14 4073 4073 8GZY 37429870 Escherichia coli FtsZ complexed with monobody (P21) 2022-09-27 2023-07-19 Fujita, J.,Amesaka, H.,Yoshizawa, T.,Hibino, K.,Kamimura, N.,Kuroda, N.,Konishi, T.,Kato, Y.,Hara, M.,Inoue, T.,Namba, K.,Tanaka, S.I.,Matsumura, H. Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun 2023 14 4073 4073 7YPP 37358501 Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1. 2022-08-04 2023-07-26 Sim, K.S.,Inoue, T. Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1. Acta Crystallogr.,Sect.F 2023 79 169 179 8HU5 37462081 Crystal structure of DNA octamer containing GuNA[Me,tBu] 2022-12-22 2023-08-09 Yamaguchi, T.,Horie, N.,Aoyama, H.,Kumagai, S.,Obika, S. Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids. Nucleic Acids Res. 2023 51 7749 7761 8I3J 37400274 Crystal structure of human inner-arm dynein heavy chain d stalk and microtubule binding domain 2023-01-17 2023-08-09 Ko, S.,Toda, A.,Tanaka, H.,Yu, J.,Kurisu, G. Crystal structure of the stalk region of axonemal inner-arm dynein-d reveals unique features in the coiled-coil and microtubule-binding domain. Febs Lett. 2023 597 2149 2160 8I50 37462081 Crystal structure of DNA octamer containing GuNA[Me,Me] 2023-01-21 2023-08-09 Yamaguchi, T.,Horie, N.,Aoyama, H.,Kumagai, S.,Obika, S. Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids. Nucleic Acids Res. 2023 51 7749 7761 8H25 Lacticaseibacillus casei GH35 beta-galactosidase LBCZ_0230 2022-10-04 2023-08-16 Saburi, W.,Ota, T.,Kato, K.,Tagami, T.,Yamashita, K.,Yao, M.,Mori, H. Function and structure of Lacticaseibacillus cases GH35 beta-galactosidase LBCZ_0230 with high hydrolytic activity to lactose-N-biose I and galactic-N-biose. J.Appl.Glycosci. 2023 70 43 52 8GRT Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7 2022-09-02 2023-09-06 Koushi, H.,Yasumitsu, S.,Akihiro, N.,Suzuki, Y.,Wataru, O.,Mizuki, S.,Chisato, K.,Saori, R.,Nobutada, T.,Anna, M.,Keiko, H.,Yuko, Y. Small Dipeptide Analogues Generated by Co-crystal Structure of Bacterial Dipeptidyl Peptidase 7 to Defeat Stenotrophomonas maltophilia To Be Published 0 0 0 0 8HTB 36854145 Staphylococcus aureus FtsZ 12-316 complexed with TXH9179 2022-12-21 2023-09-20 Bryan, E.,Ferrer-Gonzalez, E.,Sagong, H.Y.,Fujita, J.,Mark, L.,Kaul, M.,LaVoie, E.J.,Matsumura, H.,Pilch, D.S. Structural and Antibacterial Characterization of a New Benzamide FtsZ Inhibitor with Superior Bactericidal Activity and In Vivo Efficacy Against Multidrug-Resistant Staphylococcus aureus. Acs Chem.Biol. 2023 18 629 642 8HTB 36854145 Staphylococcus aureus FtsZ 12-316 complexed with TXH9179 2022-12-21 2023-09-20 Bryan, E.,Ferrer-Gonzalez, E.,Sagong, H.Y.,Fujita, J.,Mark, L.,Kaul, M.,LaVoie, E.J.,Matsumura, H.,Pilch, D.S. Structural and Antibacterial Characterization of a New Benzamide FtsZ Inhibitor with Superior Bactericidal Activity and In Vivo Efficacy Against Multidrug-Resistant Staphylococcus aureus. Acs Chem.Biol. 2023 18 629 642 8J83 37668215 Crystal structure of formate dehydrogenase from Methylorubrum extorquens AM1 2023-04-29 2023-10-11 Kobayashi, A.,Taketa, M.,Sowa, K.,Kano, K.,Higuchi, Y.,Ogata, H. Structure and function relationship of formate dehydrogenases: an overview of recent progress. Iucrj 2023 10 544 554 8JBO 37726065 Crystal structure of TxGH116 from Thermoanaerobacterium xylanolyticum with isofagomine 2023-05-09 2023-10-11 Meelua, W.,Thinkumrob, N.,Saparpakorn, P.,Pengthaisong, S.,Hannongbua, S.,Ketudat Cairns, J.R.,Jitonnom, J. Structural basis for inhibition of a GH116 beta-glucosidase and its missense mutants by GBA2 inhibitors: Crystallographic and quantum chemical study. Chem.Biol.Interact. 2023 384 110717 110717 8HX6 37712435 Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae 2023-01-04 2023-10-18 Nakamichi, Y.,Kobayashi, J.,Toyoda, K.,Suda, M.,Hiraga, K.,Inui, M.,Watanabe, M. Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase. Acta Crystallogr D Struct Biol 2023 79 895 908 8HX7 37712435 Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with L-glutamine 2023-01-04 2023-10-18 Nakamichi, Y.,Kobayashi, J.,Toyoda, K.,Suda, M.,Hiraga, K.,Inui, M.,Watanabe, M. Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase. Acta Crystallogr D Struct Biol 2023 79 895 908 8HX8 37712435 Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with chorismate 2023-01-04 2023-10-18 Nakamichi, Y.,Kobayashi, J.,Toyoda, K.,Suda, M.,Hiraga, K.,Inui, M.,Watanabe, M. Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase. Acta Crystallogr D Struct Biol 2023 79 895 908 8HX9 37712435 Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae with chorismate 2023-01-04 2023-10-18 Nakamichi, Y.,Kobayashi, J.,Toyoda, K.,Suda, M.,Hiraga, K.,Inui, M.,Watanabe, M. Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase. Acta Crystallogr D Struct Biol 2023 79 895 908 8HCD 37870446 Crystal structure of mTREX1-DNA product complex (dNMP) 2022-11-01 2023-11-08 Huang, K.W.,Wu, C.Y.,Toh, S.I.,Liu, T.C.,Tu, C.I.,Lin, Y.H.,Cheng, A.J.,Kao, Y.T.,Chu, J.W.,Hsiao, Y.Y. Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids. Nucleic Acids Res. 2023 51 11927 11940 8I04 37965540 Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with serine 2023-01-10 2023-11-22 Toyomoto, T.,Ono, K.,Shiba, T.,Momitani, K.,Zhang, T.,Tsutsuki, H.,Ishikawa, T.,Hoso, K.,Hamada, K.,Rahman, A.,Wen, L.,Maeda, Y.,Yamamoto, K.,Matsuoka, M.,Hanaoka, K.,Niidome, T.,Akaike, T.,Sawa, T. Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics. Front Microbiol 2023 14 1276447 1276447 8I06 37965540 Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with CoA 2023-01-10 2023-11-22 Toyomoto, T.,Ono, K.,Shiba, T.,Momitani, K.,Zhang, T.,Tsutsuki, H.,Ishikawa, T.,Hoso, K.,Hamada, K.,Rahman, A.,Wen, L.,Maeda, Y.,Yamamoto, K.,Matsuoka, M.,Hanaoka, K.,Niidome, T.,Akaike, T.,Sawa, T. Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics. Front Microbiol 2023 14 1276447 1276447 8I09 37965540 Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with butyl gallate 2023-01-10 2023-11-22 Toyomoto, T.,Ono, K.,Shiba, T.,Momitani, K.,Zhang, T.,Tsutsuki, H.,Ishikawa, T.,Hoso, K.,Hamada, K.,Rahman, A.,Wen, L.,Maeda, Y.,Yamamoto, K.,Matsuoka, M.,Hanaoka, K.,Niidome, T.,Akaike, T.,Sawa, T. Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics. Front Microbiol 2023 14 1276447 1276447 7YPR 37358501 Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1. 2022-08-04 2023-12-06 Sim, K.S.,Inoue, T. Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1. Acta Crystallogr.,Sect.F 2023 79 169 179 8WV8 Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2023-10-23 2023-12-27 Furuike, Y.,Yamashita, E.,Akiyama, S. Structure-function relationship of KaiC around dawn Biophys Physicobio. 2023 20 0 0 8WVE Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC 2023-10-23 2023-12-27 Furuike, Y.,Yamashita, E.,Akiyama, S. Structure-function relationship of KaiC around dawn Biophys Physicobio. 2023 20 0 0 8J4J 38143427 X-ray structure of a ferric ion-binding protein A (FbpA) from Vibrio metschnikovii in complex with ferric ion 2023-04-20 2024-01-10 Lu, P.,Jiang, J.,Liu, C.,Okuda, S.,Itoh, H.,Okamoto, K.,Suzuki, M.,Nagata, K. Molecular mechanism of Fe 3+ binding inhibition to Vibrio metschnikovii ferric ion-binding protein, FbpA, by rosmarinic acid and its hydrolysate, danshensu. Protein Sci. 2024 33 0 0 8WAF 38134410 Crystal structure of the C-terminal fragment (residues 756-982 with the C864S mutation) of Arabidopsis thaliana CHUP1 2023-09-07 2024-01-17 Kong, S.G.,Yamazaki, Y.,Shimada, A.,Kijima, S.T.,Hirose, K.,Katoh, K.,Ahn, J.,Song, H.G.,Han, J.W.,Higa, T.,Takano, A.,Nakamura, Y.,Suetsugu, N.,Kohda, D.,Uyeda, T.Q.P.,Wada, M. CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement. Plant Cell 2024 36 1159 1181 8WAG 38134410 Crystal structure of the C-terminal fragment (residues 716-982) of Arabidopsis thaliana CHUP1 2023-09-07 2024-01-17 Kong, S.G.,Yamazaki, Y.,Shimada, A.,Kijima, S.T.,Hirose, K.,Katoh, K.,Ahn, J.,Song, H.G.,Han, J.W.,Higa, T.,Takano, A.,Nakamura, Y.,Suetsugu, N.,Kohda, D.,Uyeda, T.Q.P.,Wada, M. CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement. Plant Cell 2024 36 1159 1181 8I3Y Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA. 2023-01-18 2024-01-31 Mochizuki, K.,Inaoka, D.K.,Fukuda, K.,Kurasawa, H.,Iyoda, K.,Nakai, U.,Harada, S.,Balogun, E.O.,Mazet, M.,Millerioux, Y.,Bringaud, F.,Boshart, M.,Hirayama, K.,Kita, K.,Shiba, T. Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA. To Be Published 0 0 0 0 8I40 Crystal structure of ASCT from Trypanosoma brucei in complex with CoA. 2023-01-18 2024-01-31 Mochizuki, K.,Inaoka, D.K.,Fukuda, K.,Kurasawa, H.,Iyoda, K.,Nakai, U.,Harada, S.,Balogun, E.O.,Mazet, M.,Millerioux, Y.,Bringaud, F.,Boshart, M.,Hirayama, K.,Kita, K.,Shiba, T. Crystal structure of ligand complexes of ASCT from Trypanosoma brucei and molecular mechanism in comparison with mammalian SCOT. To Be Published 0 0 0 0 8HYL Crystal structure of DO1 Fv-clasp fragment 2023-01-06 2024-02-14 Anan, Y.,Itakura, M.,Shimoda, T.,Yamaguchi, K.,Lu, P.,Nagata, K.,Dong, J.,Ueda, H.,Uchida, K. Molecular and structural basis of anti-DNA antibody specificity for pyrrolated proteins Commun Biol 2024 7 149 0 8J6N 37777556 Crystal structure of Cystathionine gamma-lyase in complex with compound 1 2023-04-26 2024-02-14 Echizen, H.,Hanaoka, K.,Shimamoto, K.,Hibi, R.,Toma-Fukai, S.,Ohno, H.,Sasaki, E.,Komatsu, T.,Ueno, T.,Tsuchiya, Y.,Watanabe, Y.,Otsuka, T.,Saito, H.,Nagatoishi, S.,Tsumoto, K.,Kojima, H.,Okabe, T.,Shimizu, T.,Urano, Y. Discovery of a cystathionine gamma-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5'-phosphate (PLP) via Schiff base formation. Sci Rep 2023 13 16456 16456 8IQE 38349137 Crystal structure of tetrameric K2-2 TSP 2023-03-16 2024-02-21 Ye, T.J.,Fung, K.M.,Lee, I.M.,Ko, T.P.,Lin, C.Y.,Wong, C.L.,Tu, I.F.,Huang, T.Y.,Yang, F.L.,Chang, Y.P.,Wang, J.T.,Lin, T.L.,Huang, K.F.,Wu, S.H. Klebsiella pneumoniae K2 capsular polysaccharide degradation by a bacteriophage depolymerase does not require trimer formation. Mbio 2024 15 0 0 8JU3 Mu phage tail fiber 2023-06-24 2024-02-28 Mori, Y.,Yamashita, E.,Nakagawa, A.,Matsuzawa, T.,Inagaki, M.,Cui, L.,Tanaka, S.,Hatori, S.,Takeda, S. Determination of three-dimensional structure of bacteriophase Mu tail fiber To Be Published 0 0 0 0 8JYQ 38460519 Crystal structure of cancer-specific anti-HER2 antibody H2Mab-214 in complex with epitope peptide 2023-07-03 2024-03-13 Arimori, T.,Mihara, E.,Suzuki, H.,Ohishi, T.,Tanaka, T.,Kaneko, M.K.,Takagi, J.,Kato, Y. Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies. Structure 2024 0 0 0 8JYR 38460519 Crystal structure of anti-HER2 antibody H2Mab-119 in complex with HER2 domain I 2023-07-03 2024-03-13 Arimori, T.,Mihara, E.,Suzuki, H.,Ohishi, T.,Tanaka, T.,Kaneko, M.K.,Takagi, J.,Kato, Y. Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies. Structure 2024 0 0 0 8IUS Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86 2023-03-25 2024-03-27 Oda, K.,Komaguchi, K.,Matoba, Y. Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published 0 0 0 0 8IUT Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86 2023-03-25 2024-03-27 Oda, K.,Komaguchi, K.,Matoba, Y. Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published 0 0 0 0 8IUU Crystal structure of Manganese-rebound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86 2023-03-25 2024-03-27 Oda, K.,Komaguchi, K.,Matoba, Y. Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published 0 0 0 0 8IUV Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86 2023-03-25 2024-03-27 Oda, K.,Komaguchi, K.,Matoba, Y. Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published 0 0 0 0 8IUW Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86 2023-03-25 2024-03-27 Oda, K.,Komaguchi, K.,Matoba, Y. Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published 0 0 0 0 8IYU CfbA S11T variant with Ni(II) ions 2023-04-06 2024-04-10 Ogawa, S.,Hikita, M.,Fujishiro, T. Substrate selectivity of CfbA To be published 0 0 0 0 8JOR 37920243 Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal 2023-06-08 2024-04-17 Nakamichi, Y.,Saika, A.,Watanabe, M.,Fujii, T.,Morita, T. Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation. Front Bioeng Biotechnol 2023 11 1243595 1243595 8JOS 37920243 Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal 2023-06-08 2024-04-17 Nakamichi, Y.,Saika, A.,Watanabe, M.,Fujii, T.,Morita, T. Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation. Front Bioeng Biotechnol 2023 11 1243595 1243595