PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1FVP 15299728 FLAVOPROTEIN 390 1995-07-07 1995-10-15 Kita, A.,Kasai, S.,Miyata, M.,Miki, K. Structure of flavoprotein FP390 from a luminescent bacterium Photobacterium phosphoreum refined at 2.7 A resolution. Acta Crystallogr.,Sect.D 1996 52 77 86 1AYL PHOSPHOENOLPYRUVATE CARBOXYKINASE 1995-12-07 1997-01-11 Tari, L.W.,Matte, A.,Pugazhenthi, U.,Goldie, H.,Delbaere, L.T. Snapshot of an enzyme reaction intermediate in the structure of the ATP-Mg2+-oxalate ternary complex of Escherichia coli PEP carboxykinase. Nat.Struct.Biol. 1996 3 355 363 2HEB CONTRIBUTION OF WATER MOLECULES IN THE INTERIOR OF A PROTEIN TO THE CONFORMATIONAL STABILITY 1997-09-16 1998-01-28 Takano, K.,Funahashi, J.,Yamagata, Y.,Fujii, S.,Yutani, K. Contribution of water molecules in the interior of a protein to the conformational stability. J.Mol.Biol. 1997 274 132 142 1HJP HOLLIDAY JUNCTION BINDING PROTEIN RUVA FROM E. COLI 1997-08-21 1998-02-25 Nishino, T.,Ariyoshi, M.,Iwasaki, H.,Shinagawa, H.,Morikawa, K. Functional Analyses of the Domain Structure in the Holliday Junction Binding Protein Ruva Structure 1998 6 11 21 2OCC BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE 1998-05-26 1999-01-13 Yoshikawa, S.,Shinzawa-Itoh, K.,Nakashima, R.,Yaono, R.,Yamashita, E.,Inoue, N.,Yao, M.,Fei, M.J.,Libeu, C.P.,Mizushima, T.,Yamaguchi, H.,Tomizaki, T.,Tsukihara, T. Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. Science 1998 280 1723 1729 1B5Y 10350481 CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS 1999-01-11 1999-01-20 Takano, K.,Yamagata, Y.,Kubota, M.,Funahashi, J.,Fujii, S.,Yutani, K. Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser --> Ala mutants. Biochemistry 1999 38 6623 6629 1B7M 10469827 VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES 1999-01-24 1999-01-27 Takano, K.,Ota, M.,Ogasahara, K.,Yamagata, Y.,Nishikawa, K.,Yutani, K. Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng. 1999 12 663 672 1VFR THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI 1998-01-09 1999-02-16 Koike, H.,Sasaki, H.,Kobori, T.,Zenno, S.,Saigo, K.,Murphy, M.E.,Adman, E.T.,Tanokura, M. 1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins. J.Mol.Biol. 1998 280 259 273 1DPT 10079069 D-DOPACHROME TAUTOMERASE 1998-05-11 1999-03-30 Sugimoto, H.,Taniguchi, M.,Nakagawa, A.,Tanaka, I.,Suzuki, M.,Nishihira, J. Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution. Biochemistry 1999 38 3268 3279 1KDJ 10206999 OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA 1998-05-08 1999-05-11 Kohzuma, T.,Inoue, T.,Yoshizaki, F.,Sasakawa, Y.,Onodera, K.,Nagatomo, S.,Kitagawa, T.,Uzawa, S.,Isobe, Y.,Sugimura, Y.,Gotowda, M.,Kai, Y. The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions. J.Biol.Chem. 1999 274 11817 11823 7CEI 10368275 THE ENDONUCLEASE DOMAIN OF COLICIN E7 IN COMPLEX WITH ITS INHIBITOR IM7 PROTEIN 1998-09-17 1999-09-17 Ko, T.P.,Liao, C.C.,Ku, W.Y.,Chak, K.F.,Yuan, H.S. The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. Structure Fold.Des. 1999 7 91 102 1VSR 10360178 VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI 1999-02-13 1999-10-27 Tsutakawa, S.E.,Muto, T.,Kawate, T.,Jingami, H.,Kunishima, N.,Ariyoshi, M.,Kohda, D.,Nakagawa, M.,Morikawa, K. Crystallographic and functional studies of very short patch repair endonuclease. Mol.Cell 1999 3 621 628 1QUV 10574802 CRYSTAL STRUCTURE OF THE RNA DIRECTED RNA POLYMERASE OF HEPATITIS C VIRUS 1999-07-04 1999-11-05 Ago, H.,Adachi, T.,Yoshida, A.,Yamamoto, M.,Habuka, N.,Yatsunami, K.,Miyano, M. Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus. Structure Fold.Des. 1999 7 1417 1426 456D 10600379 MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA 1999-03-06 2000-01-01 Chatake, T.,Ono, A.,Ueno, Y.,Matsuda, A.,Takenaka, A. 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Biochemistry 2000 39 1915 1923 1PGR 10537111 2:2 COMPLEX OF G-CSF WITH ITS RECEPTOR 1999-03-08 2000-03-08 Aritomi, M.,Kunishima, N.,Okamoto, T.,Kuroki, R.,Ota, Y.,Morikawa, K. Atomic structure of the GCSF-receptor complex showing a new cytokine-receptor recognition scheme. Nature 1999 401 713 717 1POO 10655618 THERMOSTABLE PHYTASE FROM BACILLUS SP 1999-04-16 2000-04-19 Ha, N.C.,Oh, B.C.,Shin, S.,Kim, H.J.,Oh, T.K.,Kim, Y.O.,Choi, K.Y.,Oh, B.H. Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states. Nat.Struct.Biol. 2000 7 147 153 1SMA 10473583 CRYSTAL STRUCTURE OF A MALTOGENIC AMYLASE 1999-04-21 2000-04-26 Kim, J.S.,Cha, S.S.,Kim, H.J.,Kim, T.J.,Ha, N.C.,Oh, S.T.,Cho, H.S.,Cho, M.J.,Kim, M.J.,Lee, H.S.,Kim, J.W.,Choi, K.Y.,Park, K.H.,Oh, B.H. Crystal structure of a maltogenic amylase provides insights into a catalytic versatility. 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Crystal structure of brain pyridoxal kinase, a novel member of the ribokinase superfamily J.BIOL.CHEM. 2002 277 46385 46390 1IT9 12499636 CRYSTAL STRUCTURE OF AN ANTIGEN-BINDING FRAGMENT FROM A HUMANIZED VERSION OF THE ANTI-HUMAN FAS ANTIBODY HFE7A 2002-01-11 2003-02-25 Haruyama, H.,Ito, S.,Miyadai, K.,Takahashi, T.,Kawaida, R.,Takayama, T.,Hanzawa, H.,Hata, T.,Yamaguchi, J.,Yoshida-Kato, H.,Ichikawa, K.,Ohsumi, J.,Yonehara, S.,Serizawa, N. Humanization of the Mouse Anti-Fas Antibody HFE7A and Crystal Structure of the Humanized HFE7A Fab Fragment BIOL.PHARM.BULL. 2002 25 1537 1545 1NP2 12837801 Crystal structure of thermostable beta-glycosidase from thermophilic eubacterium Thermus nonproteolyticus HG102 2003-01-16 2003-07-15 Wang, X.,He, X.,Yang, S.,An, X.,Chang, W.,Liang, D. Structural Basis for Thermostability of beta-Glycosidase from the Thermophilic Eubacterium Thermus nonproteolyticus HG102. J.Bacteriol. 2003 185 4248 4255 1UEX 12851390 Crystal structure of von Willebrand Factor A1 domain complexed with snake venom bitiscetin 2003-05-22 2003-09-30 Maita, N.,Nishio, K.,Nishimoto, E.,Matsui, T.,Shikamoto, Y.,Morita, T.,Sadler, J.E.,Mizuno, H. Crystal structure of von Willebrand factor A1 domain complexed with snake venom, bitiscetin. Insight into glycoprotein Ibalpha binding mechanism induced by snake venom proteins. J.Biol.Chem. 2003 278 37777 37781 1UF2 14527391 The Atomic Structure of Rice dwarf Virus (RDV) 2003-05-23 2003-10-14 Nakagawa, A.,Miyazaki, N.,Taka, J.,Naitow, H.,Ogawa, A.,Fujimoto, Z.,Mizuno, H.,Higashi, T.,Watanabe, Y.,Omura, T.,Cheng, R.H.,Tsukihara, T. The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure 2003 11 1227 1238 1KCB 12615072 Crystal Structure of a NO-forming Nitrite Reductase Mutant: an Analog of a Transition State in Enzymatic Reaction 2001-11-07 2003-11-04 Liu, S.Q.,Chang, T.,Liu, M.Y.,LeGall, J.,Chang, W.C.,Zhang, J.P.,Liang, D.C.,Chang, W.R. Crystal structure of a NO-forming nitrite reductase mutant: an analog of a transition state in enzymatic reaction Biochem.Biophys.Res.Commun. 2003 302 568 574 1JUV Crystal structure analysis of Dihydrofolate reductase from Bacteriophage T4 2001-08-28 2003-12-23 Moon, J.H.,Oh, Y.K.,Lee, J.Y.,Suh, S.W. Crystal structure analysis of Dihydrofolate reductase from Bacteriophage T4 To be Published 0 0 0 0 1J2T 15003455 Creatininase Mn 2003-01-11 2004-01-27 Yoshimoto, T.,Tanaka, N.,Kanada, N.,Inoue, T.,Nakajima, Y.,Haratake, M.,Nakamura, K.T.,Xu, Y.,Ito, K. Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism J.Mol.Biol. 2004 337 399 416 1J2U 15003455 Creatininase Zn 2003-01-11 2004-01-27 Yoshimoto, T.,Tanaka, N.,Kanada, N.,Inoue, T.,Nakajima, Y.,Haratake, M.,Nakamura, K.T.,Xu, Y.,Ito, K. Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism J.Mol.Biol. 2004 337 399 416 1UK0 14706823 Crystal structure of catalytic domain of human poly(ADP-ribose) polymerase with a novel inhibitor 2003-08-13 2004-01-27 Kinoshita, T.,Nakanishi, I.,Warizaya, M.,Iwashita, A.,Kido, Y.,Hattori, K.,Fujii, T. Inhibitor-induced structural change of the active site of human poly(ADP-ribose) polymerase. Febs Lett. 2004 556 43 46 1J1Q Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) 2002-12-14 2004-02-03 Watanabe, K.,Sato, E.,Honjo, E.,Motoshima, H.,Kurokawa, H.,Mikami, B.,Monzingo, A.F.,Robertus, J.D.,Fujii, H.,Hidaka, A. 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