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Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI. 2002 11 2184 2195 1IUP 12192074 meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with isobutyrates 2002-03-06 2002-09-18 Fushinobu, S.,Saku, T.,Hidaka, M.,Jun, S.-Y.,Nojiri, H.,Yamane, H.,Shoun, H.,Omori, T.,Wakagi, T. Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI. 2002 11 2184 2195 1KWK 12215416 Crystal structure of Thermus thermophilus A4 beta-galactosidase in complex with galactose 2002-01-29 2002-10-02 Hidaka, M.,Fushinobu, S.,Ohtsu, N.,Motoshima, H.,Matsuzawa, H.,Shoun, H.,Wakagi, T. Trimeric crystal structure of the glycoside hydrolase family 42 beta-galactosidase from Thermus thermophilus A4 and the structure of its complex with galactose. J.Mol.Biol. 2002 322 79 91 1IOC 12359083 CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME, EAEA-I56T 2001-02-27 2002-10-09 Goda, S.,Takano, K.,Yamagata, Y.,Maki, S.,Namba, K.,Yutani, K. Elongation in a beta-structure promotes amyloid-like fibril formation of human lysozyme. J.Biochem. 2002 132 655 661 1KEI Thermolysin (substrate-free) 2001-11-16 2002-11-16 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors To be Published 0 0 0 0 1KJP Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid) 2001-12-05 2002-12-05 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors To be Published 0 0 0 0 1KKK Thermolysin complexed with Z-L-Aspartic Acid (benzyloxycarbonyl-L-Aspartic Acid) 2001-12-10 2002-12-10 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1IXJ 12466550 Crystal Structure of d(GCGAAAGCT) Containing Parallel-stranded Duplex with Homo Base Pairs and Anti-Parallel Duplex with Watson-Crick Base pairs 2002-06-22 2002-12-11 Sunami, T.,Kondo, J.,Kobuna, T.,Hirao, I.,Watanabe, K.,Miura, K.,Takenaka, A. Crystal Structure of d(GCGAAAGCT) Containing a Parallel-stranded Duplex with Homo Base Pairs and an Anti-Parallel Duplex with Watson-Crick Base pairs Nucleic Acids Res. 2002 30 5253 5260 1NFF 12524453 Crystal structure of Rv2002 gene product from Mycobacterium tuberculosis 2002-12-14 2002-12-30 Yang, J.K.,Park, M.S.,Waldo, G.S.,Suh, S.W. Directed evolution approach to a structural genomics project: Rv2002 from Mycobacterium tuberculosis Proc.Natl.Acad.Sci.USA 2003 100 455 460 1NFR 12524453 Rv2002 gene product from Mycobacterium tuberculosis 2002-12-16 2002-12-30 Yang, J.K.,Park, M.S.,Waldo, G.S.,Suh, S.W. Directed evolution approach to a structural genomics project: Rv2002 from Mycobacterium tuberculosis Proc.Natl.Acad.Sci.USA 2003 100 455 460 1KR6 Thermolysin complexed with Z-D-Glutamic acid (benzyloxycarbonyl-D-Glutamic acid) 2002-01-09 2003-01-09 Senda, M.,Senda, T.,Kidokoro, S. Crystal structure analyses of thermolysin in complex with its inhibitors. To be Published 0 0 0 0 1GIQ 12498797 Crystal Structure of the Enzymatic Componet of Iota-Toxin from Clostridium Perfringens with NADH 2001-03-12 2003-01-14 Tsuge, H.,Nagahama, M.,Nishimura, H.,Hisatsune, J.,Sakaguchi, Y.,Itogawa, Y.,Katunuma, N.,Sakurai, J. Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin J.MOL.BIOL. 2003 325 471 483 1GIR 12498797 CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM CLOSTRIDIUM PERFRINGENS WITH NADPH 2001-03-12 2003-01-14 Tsuge, H.,Nagahama, M.,Nishimura, H.,Hisatsune, J.,Sakaguchi, Y.,Itogawa, Y.,Katunuma, N.,Sakurai, J. Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin J.MOL.BIOL. 2003 325 471 483 1JQN 12467579 Crystal structure of E.coli phosphoenolpyruvate carboxylase in complex with Mn2+ and DCDP 2001-08-07 2003-01-14 Matsumura, H.,Xie, Y.,Shirakata, S.,Inoue, T.,Yoshinaga, T.,Ueno, Y.,Izui, K.,Kai, Y. Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases. Structure 2002 10 1721 1730 1KWB 12206778 Crystal structure of the His145Ala mutant of 2,3-dihydroxybipheny dioxygenase (BphC) 2002-01-29 2003-01-29 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1KWC 12206778 The His145Ala mutant of 2,3-dihydroxybiphenyl dioxygenase in complex with 2,3-dihydroxybiphenyl 2002-01-29 2003-01-29 Sato, N.,Uragami, Y.,Nishizaki, T.,Takahashi, Y.,Sazaki, G.,Sugimoto, K.,Nonaka, T.,Masai, E.,Fukuda, M.,Senda, T. Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase J.Mol.Biol. 2002 321 621 636 1IQY 12537504 CRYSTAL STRUCTURE OF NICKEL-SUBSTITUTED AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS 2001-08-28 2003-02-04 Kishishita, S.,Okajima, T.,Kim, M.,Yamaguchi, H.,Hirota, S.,Suzuki, S.,Kuroda, S.,Tanizawa, K.,Mure, M. Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes J.AM.CHEM.SOC. 2003 125 1041 1055 1J3A Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii 2003-01-21 2003-02-04 Nakashima, T.,Tanaka, M.,Kazama, T.,Kawamura, S.,Kimura, M.,Yao, M.,Tanaka, I. Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii To be Published 0 0 0 0 1IV8 Crystal Structure of Maltooligosyl trehalose synthase 2002-03-15 2003-02-25 Kobayashi, M.,Kubota, M.,Matsuura, Y. Refined Structure and Functional Implications of Trehalose Synthase from Sulfolobus acidocaldarius J.APPL.Glyosci. 2003 50 1 8 1M7J 12454005 Crystal structure of D-aminoacylase defines a novel subset of amidohydrolases 2002-07-22 2003-02-25 Liaw, S.-H.,Chen, S.-J.,Ko, T.-P.,Hsu, C.-S.,Chen, C.J.,Wang, A.H.,Tsai, Y.-C. Crystal Structure of D-Aminoacylase from Alcaligenes faecalis DA1. A NOVEL SUBSET OF AMIDOHYDROLASES AND INSIGHTS INTO THE ENZYME MECHANISM. J.Biol.Chem. 2003 278 4957 4962 1NM3 12529327 Crystal structure of Heamophilus influenza hybrid-Prx5 2003-01-08 2003-03-25 Kim, S.J.,Woo, J.R.,Hwang, Y.S.,Jeong, D.G.,Shin, D.H.,Kim, K.,Ryu, S.E. The Tetrameric Structure of Haemophilus influenza Hybrid Prx5 Reveals Interactions between Electron Donor and Acceptor Proteins. J.Biol.Chem. 2003 278 10790 10798 1IZC 12634789 Crystal Structure Analysis of Macrophomate synthase 2002-10-01 2003-04-01 Ose, T.,Watanabe, K.,Mie, T.,Honma, M.,Watanabe, H.,Yao, M.,Oikawa, H.,Tanaka, I. Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase. Nature 2003 422 185 189 1UC3 Crystal Structure of hemoglobin I from river lamprey 2003-04-08 2003-04-29 Seki, M.,Yao, M.,Yazawa, Y.,Tanaka, I. Crystal structure analysis of river lamprey hemoglobin I To be Published 0 0 0 0 1IWA 12220629 RUBISCO FROM GALDIERIA PARTITA 2002-04-30 2003-04-30 Okano, Y.,Mizohata, E.,Xie, Y.,Matsumura, H.,Sugawara, H.,Inoue, T.,Yokota, A.,Kai, Y. X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site FEBS LETT. 2002 527 33 36 1J2J 12679809 Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form 2003-01-05 2003-05-06 Shiba, T.,Kawasaki, M.,Takatsu, H.,Nogi, T.,Matsugaki, N.,Igarashi, N.,Suzuki, M.,Kato, R.,Nakayama, K.,Wakatsuki, S. Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport NAT.STRUCT.BIOL. 2003 10 386 393 1J3U 12706722 Crystal structure of aspartase from Bacillus sp. YM55-1 2003-02-16 2003-05-06 Fujii, T.,Sakai, H.,Kawata, Y.,Hata, Y. Crystal Structure of Thermostable Aspartase from Bacillus sp. 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Crystal Structure of a Catalytic Site Mutant of beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltopentaose BIOCHEMISTRY 2003 42 5574 5581 1J11 12761294 beta-amylase from Bacillus cereus var. mycoides in complex with alpha-EPG 2002-11-25 2003-06-17 Oyama, T.,Miyake, H.,Kusunoki, M.,Nitta, Y. Crystal Structures of beta-Amylase from Bacillus cereus var. mycoides in Complexes with Substrate Analogs and Affinity-Labeling Reagents J.BIOCHEM.(TOKYO) 2003 133 467 474 1K1Y 12618437 Crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose 2001-09-26 2003-06-17 Imamura, H.,Fushinobu, S.,Yamamoto, M.,Kumasaka, T.,Jeon, B.S.,Wakagi, T.,Matsuzawa, H. Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor J.BIOL.CHEM. 2003 278 19378 19386 1UAJ 12773376 Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition 2003-03-11 2003-06-17 Ahn, H.J.,Kim, H.-W.,Yoon, H.-J.,Lee, B.I.,Suh, S.W.,Yang, J.K. Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition EMBO J. 2003 22 2593 2603 1UAK 12773376 Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition 2003-03-11 2003-06-17 Ahn, H.J.,Kim, H.-W.,Yoon, H.-J.,Lee, B.I.,Suh, S.W.,Yang, J.K. Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition EMBO J. 2003 22 2593 2603 1UAL 12773376 Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition 2003-03-11 2003-06-17 Ahn, H.J.,Kim, H.-W.,Yoon, H.-J.,Lee, B.I.,Suh, S.W.,Yang, J.K. Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition EMBO J. 2003 22 2593 2603 1MVE 12842475 Crystal structure of a natural circularly-permutated jellyroll protein: 1,3-1,4-beta-D-glucanase from Fibrobacter succinogenes 2002-09-25 2003-07-15 Tsai, L.C.,Shyur, L.F.,Lee, S.H.,Lin, S.S.,Yuan, H.S. Crystal Structure of a Natural Circularly Permuted Jellyroll Protein: 1,3-1,4-beta-D-Glucanase from Fibrobacter succinogenes. J.Mol.Biol. 2003 330 607 620 1IZK 12860426 Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v 2002-10-03 2003-07-29 Ohtaki, A.,Iguchi, A.,Mizuno, M.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES. 2003 338 1553 1558 1OUO 12881435 Crystal structure of the periplasmic endonuclease Vvn 2003-03-25 2003-08-05 Li, C.-L.,Hor, L.-I.,Chang, Z.-F.,Tsai, L.-C.,Yang, W.-Z.,Yuan, H.S. DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site. Embo J. 2003 22 4014 4025 1G6K Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+ 2000-11-06 2003-08-12 Yamamoto, K.,Kurisu, G.,Kusunoki, M.,Tabata, S.,Urabe, I.,Osaki, S. Structural analysis of stability-increasing mutants of glucose dehydrogenase To be Published 0 0 0 0 1GEE Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+ 2000-11-07 2003-08-12 Yamamoto, K.,Kurisu, G.,Kusunoki, M.,Tabata, S.,Urabe, I.,Osaki, S. Structural analysis of stability-increasing mutants of glucose dehydrogenase To be Published 0 0 0 0 1N7F 12493751 Crystal structure of the sixth PDZ domain of GRIP1 in complex with liprin C-terminal peptide 2002-11-14 2003-08-12 Im, Y.J.,Park, S.H.,Rho, S.H.,Lee, J.H.,Kang, G.B.,Sheng, M.,Kim, E.,Eom, S.H. Crystal structure of GRIP1 PDZ6-peptide complex reveals the structural basis for class II PDZ target recognition and PDZ domain-mediated multimerization J.BIOL.CHEM. 2003 278 8501 8507 1IYN 12966073 Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights for its instability 2002-09-03 2003-09-03 Wada, K.,Tada, T.,Nakamura, Y.,Ishikawa, T.,Yabuta, Y.,Yoshimura, K.,Shigeoka, S.,Nishimura, K. Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights into its instability J.BIOCHEM.(TOKYO) 2003 134 239 244 1OMY 12925796 Crystal Structure of a Recombinant alpha-insect Toxin BmKaIT1 from the scorpion Buthus martensii Karsch 2003-02-26 2003-09-09 Huang, Y.,Huang, Q.,Chen, H.,Tang, Y.,Miyake, H.,Kusunoki, M. Crystallization and preliminary crystallographic study of rBmKalphaIT1, a recombinant alpha-insect toxin from the scorpion Buthus martensii Karsch. Acta Crystallogr.,Sect.D 2003 59 1635 1636 1KV0 15321715 Cis/trans Isomerization of Non-prolyl Peptide Bond Observed in Crystal Structure of an Scorpion Toxin 2002-01-23 2003-09-16 Guan, R.J.,Xiang, Y.,He, X.L.,Wang, C.G.,Wang, M.,Zhang, Y.,Sundberg, E.J.,Wang, D.C. Structural mechanism governing cis and trans isomeric states and an intramolecular switch for cis/trans isomerization of a non-proline peptide bond observed in crystal structures of scorpion toxins. J.Mol.Biol. 2004 341 1189 1204 1OS1 12837799 Structure of Phosphoenolpyruvate Carboxykinase complexed with ATP,Mg, Ca and pyruvate. 2003-03-18 2003-09-23 Sudom, A.,Walters, R.,Pastushok, L.,Goldie, D.,Prasad, L.,Delbaere, L.T.,Goldie, H. Mechanisms of activation of phosphoenolpyruvate carboxykinase from Escherichia coli by Ca2+ and of desensitization by trypsin. J.BACTERIOL. 2003 185 4233 4242 1IUC 14503859 Fucose-specific lectin from Aleuria aurantia with three ligands 2002-03-01 2003-09-30 Fujihashi, M.,Peapus, D.H.,Kamiya, N.,Nagata, Y.,Miki, K. Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites Biochemistry 2003 42 11093 11099 1IYS 12962487 Crystal Structure of Class A beta-Lactamase Toho-1 2002-09-06 2003-10-14 Ibuka, A.S.,Ishii, Y.,Galleni, M.,Ishiguro, M.,Yamaguchi, K.,Frere, J.M.,Matsuzawa, H.,Sakai, H. Crystal Structure of Extended-Spectrum beta-Lactamase Toho-1: Insights into the Molecular Mechanism for Catalytic Reaction and Substrate Specificity Expansion Biochemistry 2003 42 10634 10643 1UIX 12954645 Coiled-coil structure of the RhoA-binding domain in Rho-kinase 2003-07-23 2003-10-21 Shimizu, T.,Ihara, K.,Maesaki, R.,Amano, M.,Kaibuchi, K.,Hakoshima, T. Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase J.Biol.Chem. 2003 278 46046 46051 1UDY 12966080 Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA 2003-05-07 2003-12-09 Satoh, A.,Nakajima, Y.,Miyahara, I.,Hirotsu, K.,Tanaka, T.,Nishina, Y.,Shiga, K.,Tamaoki, H.,Setoyama, C.,Miura, R. Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA J.BIOCHEM.(TOKYO) 2003 134 297 304 1IXV 14583612 Crystal Structure Analysis of homolog of oncoprotein gankyrin, an interactor of Rb and CDK4/6 2002-07-09 2003-12-16 Padmanabhan, B.,Adachi, N.,Kataoka, K.,Horikoshi, M. Crystal structure of the homolog of the oncoprotein gankyrin, an interactor of Rb and CDK4/6 J.BIOL.CHEM. 2004 279 1546 1552 1ULK 14623194 Crystal Structure of Pokeweed Lectin-C 2003-09-12 2003-12-23 Hayashida, M.,Fujii, T.,Hamasu, M.,Ishiguro, M.,Hata, Y. Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed. J.Mol.Biol. 2003 334 551 565 1ULM 14623194 Crystal Structure of Pokeweed Lectin-D2 complexed with tri-N-acetylchitotriose 2003-09-12 2003-12-23 Hayashida, M.,Fujii, T.,Hamasu, M.,Ishiguro, M.,Hata, Y. Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed. J.Mol.Biol. 2003 334 551 565 1UE3 14684897 Crystal structure of d(GCGAAAGC) containing hexaamminecobalt 2003-05-08 2004-01-13 Sunami, T.,Kondo, J.,Hirao, I.,Watanabe, K.,Miura, K.I.,Takenaka, A. Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure. Acta Crystallogr.,Sect.D 2004 60 90 96 1UH3 14687576 Thermoactinomyces vulgaris R-47 alpha-amylase/acarbose complex 2003-06-23 2004-01-13 Abe, A.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol. 2004 335 811 822 1J2Z 14579368 Crystal structure of UDP-N-acetylglucosamine acyltransferase 2003-01-15 2004-01-27 Lee, B.I.,Suh, S.W. Crystal structure of UDP-N-acetylglucosamine acyltransferase from Helicobacter pylori Proteins 2003 53 772 774 1Q3O 12954649 Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization 2003-07-31 2004-01-27 Im, Y.J.,Lee, J.H.,Park, S.H.,Park, S.J.,Rho, S.-H.,Kang, G.B.,Kim, E.,Eom, S.H. Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization J.Biol.Chem. 2003 278 48099 48104 1Q3O 12954649 Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization 2003-07-31 2004-01-27 Im, Y.J.,Lee, J.H.,Park, S.H.,Park, S.J.,Rho, S.-H.,Kang, G.B.,Kim, E.,Eom, S.H. Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization J.Biol.Chem. 2003 278 48099 48104 1Q3O 12954649 Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization 2003-07-31 2004-01-27 Im, Y.J.,Lee, J.H.,Park, S.H.,Park, S.J.,Rho, S.-H.,Kang, G.B.,Kim, E.,Eom, S.H. Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization J.Biol.Chem. 2003 278 48099 48104 1UHX 14646150 Crystal structure of d(GCGAGAGC): the base-intercalated duplex 2003-07-13 2004-02-03 Kondo, J.,Umeda, S.I.,Fujita, K.,Sunami, T.,Takenaka, A. X-ray analyses of d(GCGAXAGC) containing G and T at X: the base-intercalated duplex is still stable even in point mutants at the fifth residue. J.Synchrotron Radiat. 2004 11 117 120 1QY6 14747701 Structue of V8 Protease from Staphylococcus aureus 2003-09-09 2004-02-17 Prasad, L.,Leduc, Y.,Hayakawa, K.,Delbaere, L.T. The structure of a universally employed enzyme: V8 protease from Staphylococcus aureus. Acta Crystallogr.,Sect.D 2004 60 256 259 1J31 15390259 Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii 2003-01-16 2004-03-09 Sakai, N.,Tajika, Y.,Yao, M.,Watanabe, N.,Tanaka, I. Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution. Proteins 2004 57 869 873 1RI7 14976242 crystal structure of a protein in the LRP/ASNC family from the hyperthermophilic archaeon Pyrococcus sp. OT3 2003-11-16 2004-03-09 Koike, H.,Ishijima, S.A.,Clowney, L.,Suzuki, M. The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription Proc.Natl.Acad.Sci.USA 2004 101 2840 2845 1UB8 14993665 Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue 2003-03-31 2004-03-09 Sunami, T.,Kondo, J.,Hirao, I.,Watanabe, K.,Miura, K.,Takenaka, A. Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing. Acta Crystallogr.,Sect.D 2004 60 422 431 1UE4 14993665 Crystal structure of d(GCGAAAGC) 2003-05-09 2004-03-09 Sunami, T.,Kondo, J.,Hirao, I.,Watanabe, K.,Miura, K.,Takenaka, A. 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Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Eucommia ulmoides Oliver at an atomic resolution. J.Struct.Biol. 2004 148 86 97 1V3N 15133122 Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex 2003-11-03 2004-06-08 Kondo, J.,Adachi, W.,Umeda, S.,Sunami, T.,Takenaka, A. Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res. 2004 32 2541 2549 1V3P 15133122 Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet 2003-11-03 2004-06-08 Kondo, J.,Adachi, W.,Umeda, S.,Sunami, T.,Takenaka, A. Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res. 2004 32 2541 2549 1V2E 14761974 Crystal Structure of T.th HB8 Glutamine Aminotransferase complex with a-keto-g-methylthiobutyrate 2003-10-15 2004-07-06 Goto, M.,Omi, R.,Miyahara, I.,Hosono, A.,Mizuguchi, H.,Hayashi, H.,Kagamiyama, H.,Hirotsu, K. Crystal structures of glutamine:phenylpyruvate aminotransferase from Thermus thermophilus HB8: induced fit and substrate recognition J.BIOL.CHEM. 2004 279 16518 16525 1V2F 14761974 Crystal Structure of T.th HB8 Glutamine Aminotransferase complex with 3-phenylpropionate 2003-10-15 2004-07-06 Goto, M.,Omi, R.,Miyahara, I.,Hosono, A.,Mizuguchi, H.,Hayashi, H.,Kagamiyama, H.,Hirotsu, K. 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Crystal Structure of DNA Polymerase from Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 J.Mol.Biol. 2001 306 469 477 1T7A 15321715 Crystal structure of mutant Lys8Asp of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch 2004-05-08 2004-09-07 Guan, R.J.,Xiang, Y.,He, X.L.,Wang, C.G.,Wang, M.,Zhang, Y.,Sundberg, E.J.,Wang, D.C. Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins J.Mol.Biol. 2004 341 1189 1204 1T7E 15321715 Crystal structure of mutant Pro9Ser of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch 2004-05-09 2004-09-07 Guan, R.J.,Xiang, Y.,He, X.L.,Wang, C.G.,Wang, M.,Zhang, Y.,Sundberg, E.J.,Wang, D.C. 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Crystal Structure of T-protein of the Glycine Cleavage System: Cofactor binding, insights into H-protein recognition, and molecular basis for understanding nonketotic hyperglycinemia J.Biol.Chem. 2004 279 50514 50523 1UK9 15784976 Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with isovalerate 2003-08-19 2004-09-14 Fushinobu, S.,Jun, S.-Y.,Hidaka, M.,Nojiri, H.,Yamane, H.,Shoun, H.,Omori, T.,Wakagi, T. A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM. 2005 69 491 498 1UKB 15784976 Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with benzoate 2003-08-19 2004-09-14 Fushinobu, S.,Jun, S.-Y.,Hidaka, M.,Nojiri, H.,Yamane, H.,Shoun, H.,Omori, T.,Wakagi, T. 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Acta Crystallogr.,Sect.D 2005 61 207 217 1WTN 15735330 The structure of HEW Lysozyme Orthorhombic Crystal Growth under a High Magnetic Field 2004-11-25 2004-12-14 Saijo, S.,Yamada, Y.,Sato, T.,Tanaka, N.,Matsui, T.,Sazaki, G.,Nakajima, K.,Matsuura, Y. Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity. Acta Crystallogr.,Sect.D 2005 61 207 217 1T0Z 15608371 Structure of an Excitatory Insect-specific Toxin with an Analgesic Effect on Mammalian from Scorpion Buthus martensii Karsch 2004-04-14 2004-12-28 Li, C.,Guan, R.J.,Xiang, Y.,Zhang, Y.,Wang, D.C. Structure of an excitatory insect-specific toxin with an analgesic effect on mammals from the scorpion Buthus martensii Karsch. Acta Crystallogr.,Sect.D 2005 61 14 21 1V4N Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase homologue from Sulfolobus tokodaii 2003-11-14 2005-01-04 Kitago, Y.,Yasutake, Y.,Sakai, N.,Tsujimura, M.,Yao, M.,Watanabe, N.,Kawarabayasi, Y.,Tanaka, I. Crystal structure of Sulfolobus tokodaii MTAP To be Published 0 0 0 0 1XD5 15649901 Crystal structures of novel monomeric monocot mannose-binding lectins from Gastrodia elata 2004-09-04 2005-01-11 Liu, W.,Yang, N.,Ding, J.,Huang, R.H.,Hu, Z.,Wang, D.C. Structural Mechanism Governing the Quaternary Organization of Monocot Mannose-binding Lectin Revealed by the Novel Monomeric Structure of an Orchid Lectin J.Biol.Chem. 2005 280 14865 14876 1WTO 15653643 Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC 2004-11-29 2005-02-22 Chen, C.-Y.,Ko, T.-P.,Lin, T.-W.,Chou, C.-C.,Chen, C.-J.,Wang, A.H.-J. Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES. 2005 33 430 438 1VB9 15182368 Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product 2004-02-25 2005-03-08 Mizuno, M.,Tonozuka, T.,Uechi, A.,Ohtaki, A.,Ichikawa, K.,Kamitori, S.,Nishikawa, A.,Sakano, Y. The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product EUR.J.BIOCHEM. 2004 271 2530 2538 1WZK Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N 2005-03-06 2005-03-22 Mizuno, M.,Ichikawa, K.,Tonozuka, T.,Ohtaki, A.,Shimura, Y.,Kamitori, S.,Nishikawa, A.,Sakano, Y. Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published 0 0 0 0 1WZL Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469L 2005-03-06 2005-03-22 Mizuno, M.,Ichikawa, K.,Tonozuka, T.,Ohtaki, A.,Shimura, Y.,Kamitori, S.,Nishikawa, A.,Sakano, Y. Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published 0 0 0 0 1WZM Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469K 2005-03-06 2005-03-22 Mizuno, M.,Ichikawa, K.,Tonozuka, T.,Ohtaki, A.,Shimura, Y.,Kamitori, S.,Nishikawa, A.,Sakano, Y. Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published 0 0 0 0 1WE0 15770647 Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus 2004-05-21 2005-03-29 Kitano, K.,Kita, A.,Hakoshima, T.,Niimura, Y.,Miki, K. Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus Proteins 2005 59 644 647 1XNH 15645437 Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori 2004-10-05 2005-04-05 Kang, G.B.,Kim, Y.S.,Im, Y.J.,Rho, S.H.,Lee, J.H.,Eom, S.H. Crystal structure of NH3-dependent NAD+ synthetase from Helicobacter pylori Proteins 2005 58 985 988 1XNH 15645437 Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori 2004-10-05 2005-04-05 Kang, G.B.,Kim, Y.S.,Im, Y.J.,Rho, S.H.,Lee, J.H.,Eom, S.H. Crystal structure of NH3-dependent NAD+ synthetase from Helicobacter pylori Proteins 2005 58 985 988 1WG3 16428312 Structural analysis of yeast nucleosome-assembly factor CIA1p 2004-05-27 2005-06-14 Padmanabhan, B.,Kataoka, K.,Umehara, T.,Adachi, N.,Yokoyama, S.,Horikoshi, M. Structural Similarity between Histone Chaperone Cia1p/Asf1p and DNA-Binding Protein NF-{kappa}B J.Biochem.(Tokyo) 2005 138 821 829 1VDZ Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3 2004-03-26 2005-06-21 Maegawa, Y.,Morita, H.,Yao, M.,Watanabe, N.,Tanaka, I. Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3 To be Published 0 0 0 0 1V5G 18007037 Crystal Structure of the Reaction Intermediate between Pyruvate oxidase containing FAD and TPP, and Substrate Pyruvate 2003-11-22 2005-06-28 Juan, E.C.,Hoque, M.M.,Hossain, M.T.,Yamamoto, T.,Imamura, S.,Suzuki, K.,Sekiguchi, T.,Takenaka, A. The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis. Acta Crystallogr.,Sect.F 2007 63 900 907 1YYF 15983416 Correction of X-ray Intensities from an HslV-HslU co-crystal containing lattice translocation defects 2005-02-24 2005-07-12 Wang, J.,Rho, S.H.,Park, H.H.,Eom, S.H. Correction of X-ray intensities from an HslV-HslU co-crystal containing lattice-translocation defects. Acta Crystallogr.,Sect.D 2005 61 932 941 1WMR 18155243 Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 2004-07-15 2005-07-19 Mizuno, M.,Koide, A.,Yamamura, A.,Akeboshi, H.,Yoshida, H.,Kamitori, S.,Sakano, Y.,Nishikawa, A.,Tonozuka, T. Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol. 2008 376 210 220 2COI 16141215 Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with gabapentin 2005-05-17 2005-08-30 Goto, M.,Miyahara, I.,Hirotsu, K.,Conway, M.,Yennawar, N.,Islam, M.M.,Hutson, S.M. 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Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation J.Mol.Biol. 2005 351 258 265 2A6V 16439369 Crystal structure of Emp46p carbohydrate recognition domain (CRD), potassium-bound form 2005-07-04 2006-01-31 Satoh, T.,Sato, K.,Kanoh, A.,Yamashita, K.,Yamada, Y.,Igarashi, N.,Kato, R.,Nakano, A.,Wakatsuki, S. Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem. 2006 281 10410 10419 2D0K 16510443 Methionine-free mutant of Escherichia coli dihydrofolate reductase 2005-08-04 2006-02-28 Iwakura, M.,Maki, K.,Takahashi, H.,Takenawa, T.,Yokota, A.,Katayanagi, K.,Kamiyama, T.,Gekko, K. Evolutional Design of a Hyperactive Cysteine- and Methionine-free Mutant of Escherichia coli Dihydrofolate Reductase J.Biol.Chem. 2006 281 13234 13246 2D3L 16452622 Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltopentaose. 2005-09-29 2006-03-14 Kanai, R.,Haga, K.,Akiba, T.,Yamane, K.,Harata, K. Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707 Protein Sci. 2006 15 468 477 2CWT 16566584 Catalytic base deletion in copper amine oxidase from arthrobacter globiformis 2005-06-26 2006-05-02 Chiu, Y.C.,Okajima, T.,Murakawa, T.,Uchida, M.,Taki, M.,Hirota, S.,Kim, M.,Yamaguchi, H.,Kawano, Y.,Kamiya, N.,Kuroda, S.,Hayashi, H.,Yamamoto, Y.,Tanizawa, K. Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,) Biochemistry 2006 45 4105 4120 1X2E 16452443 The crystal structure of prolyl aminopeptidase complexed with Ala-TBODA 2005-04-22 2006-05-09 Nakajima, Y.,Ito, K.,Sakata, M.,Xu, Y.,Nakashima, K.,Matsubara, F.,Hatakeyama, S.,Yoshimoto, T. Unusual extra space at the active site and high activity for acetylated hydroxyproline of prolyl aminopeptidase from Serratia marcescens J.Bacteriol. 2006 188 1599 1606 1X3X 16288599 Crystal Structure of Cytochrome b5 from Ascaris suum 2005-05-11 2006-06-06 Yokota, T.,Nakajima, Y.,Yamakura, F.,Sugio, S.,Hashimoto, M.,Takamiya, S. Unique structure of Ascaris suum b5-type cytochrome: an additional alpha-helix and positively charged residues on the surface domain interact with redox partners Biochem.J. 2006 394 437 447 1ZVG 16209876 Crystal Structure Of Mutant K8DP9S Of Scorpion alpha-Like Neurotoxin Bmk M1 From Buthus Martensii Karsch 2005-06-02 2006-06-20 Ye, X.,Bosmans, F.,Li, C.,Zhang, Y.,Wang, D.C.,Tytgat, J. Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1 J.Mol.Biol. 2005 353 788 803 2D0G 16302977 Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide 2005-08-02 2006-07-11 Abe, A.,Yoshida, H.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J. 2005 272 6145 6153 2D0H 16302977 Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide 2005-08-02 2006-07-11 Abe, A.,Yoshida, H.,Tonozuka, T.,Sakano, Y.,Kamitori, S. Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J. 2005 272 6145 6153 2DFB 16790934 Xylanase II from Tricoderma reesei at 100K 2006-02-28 2006-07-11 Watanabe, N.,Akiba, T.,Kanai, R.,Harata, K. Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement. 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Stereoselectivity of fructose-1,6-bisphosphate aldolase in Thermus caldophilus Biochem.Biophys.Res.Commun. 2006 347 616 625 2D3Q 21569205 Crystal Structure of a Decolorizing Peroxidase (DyP) That Catalyses the Biological Oxidation of Anthraquinone Derivatives 2005-09-30 2006-09-30 Yoshida, T.,Tsuge, H.,Konno, H.,Hisabori, T.,Sugano, Y. The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue Febs J. 2011 278 2387 2394 2DKI 17045293 Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni, under pressure of xenon gas (12 atm) 2006-04-11 2006-10-24 Hiromoto, T.,Fujiwara, S.,Hosokawa, K.,Yamaguchi, H. 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