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Structural analysis of botulinum neurotoxin type E catalytic domain and its mutant Glu212-->Gln reveals the pivotal role of the Glu212 carboxylate in the catalytic pathway Biochemistry 2004 43 6637 6644 1T3C Clostridium botulinum type E catalytic domain E212Q mutant 2004-04-26 2004-06-29 Agarwal, R.,Eswaramoorthy, S.,Kumaran, D.,Binz, T.,Swaminathan, S. Structural analysis of botulinum neurotoxin type E catalytic domain and its mutant Glu212-->Gln reveals the pivotal role of the Glu212 carboxylate in the catalytic pathway Biochemistry 2004 43 6637 6644 1PW1 Non-Covalent Complex Of Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin 2003-06-30 2004-07-13 Silvaggi, N.R.,Josephine, H.R.,Kuzin, A.P.,Nagarajan, R.,Pratt, R.F.,Kelly, J.A. 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Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin" J.Mol.Biol. 2005 345 521 533 1PWD Covalent acyl enzyme complex of the Streptomyces R61 DD-peptidase with cephalosporin C 2003-07-01 2004-07-13 Silvaggi, N.R.,Josephine, H.R.,Kuzin, A.P.,Nagarajan, R.,Pratt, R.F.,Kelly, J.A. Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin" J.Mol.Biol. 2005 345 521 533 1PWG Covalent Penicilloyl Acyl Enzyme Complex Of The Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin 2003-07-01 2004-07-13 Silvaggi, N.R.,Josephine, H.R.,Kuzin, A.P.,Nagarajan, R.,Pratt, R.F.,Kelly, J.A. Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin" J.Mol.Biol. 2005 345 521 533 1TXL Crystal structure of metal-binding protein yodA from E. coli, Pfam DUF149 2004-07-05 2004-07-20 Eswaramoorthy, S.,Swaminathan, S. Crystal structure of a hypothetical protein yodA To be Published 0 0 0 0 1Q2H Phenylalanine Zipper Mediates APS Dimerization 2003-07-24 2004-08-03 Dhe-Paganon, S.,Werner, E.D.,Nishi, M.,Hansen, L.,Chi, Y.-I.,Shoelson, S.E. A phenylalanine zipper mediates APS dimerization. Nat.Struct.Mol.Biol. 2004 11 968 974 1T5H 4-Chlorobenzoyl-CoA Ligase/Synthetase unliganded, selenomethionine 2004-05-04 2004-08-03 Gulick, A.M.,Lu, X.,Dunaway-Mariano, D. Crystal Structure of 4-Chlorobenzoate:CoA Ligase/Synthetase in the Unliganded and Aryl Substrate-Bound States Biochemistry 2004 43 8670 8679 1SD4 Crystal Structure of a SeMet derivative of BlaI at 2.0 A 2004-02-13 2004-08-10 Safo, M.K.,Zhao, Q.,Ko, T.-P.,Musayev, F.N.,Robinson, H.,Scarsdale, N.,Wang, A.H.-J.,Archer, G.L. Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol. 2005 187 1833 1844 1T6L Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44 2004-05-06 2004-08-10 Appleton, B.A.,Loregian, A.,Filman, D.J.,Coen, D.M.,Hogle, J.M. The Cytomegalovirus DNA Polymerase Subunit UL44 Forms a C Clamp-Shaped Dimer. Mol. Cell 2004 15 233 244 1T6L Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44 2004-05-06 2004-08-10 Appleton, B.A.,Loregian, A.,Filman, D.J.,Coen, D.M.,Hogle, J.M. The Cytomegalovirus DNA Polymerase Subunit UL44 Forms a C Clamp-Shaped Dimer. Mol. Cell 2004 15 233 244 1RQX Crystal structure of ACC Deaminase complexed with Inhibitor 2003-12-07 2004-08-17 Karthikeyan, S.,Zhao, Z.,Kao, C.L.,Zhou, Q.,Tao, Z.,Zhang, H.,Liu, H.W. Structural analysis of 1-aminocyclopropane-1-carboxylate deaminase: observation of an aminyl intermediate and identification of Tyr 294 as the active-site nucleophile. Angew.Chem.Int.Ed.Engl. 2004 43 3425 3429 1RR7 Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu 2003-12-08 2004-08-17 Kumaraswami, M.,Howe, M.M.,Park, H.W. Crystal structure of the Mor protein of bacteriophage Mu, a member of the Mor/C family of transcription activators. J.Biol.Chem. 2004 279 16581 16590 1RRM Crystal Structure of Lactaldehyde reductase 2003-12-08 2004-08-17 Kumaran, D.,Swaminathan, S. Crystal structure of Lactaldehyde reductase To be Published 0 0 0 0 1RTT Crystal structure determination of a putative NADH-dependent reductase using sulfur anomalous signal 2003-12-10 2004-08-17 Agarwal, R.,Bonanno, J.B.,Burley, S.K.,Swaminathan, S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. ACTA CRYSTALLOGR.,SECT.D 2006 62 383 391 1RTT Crystal structure determination of a putative NADH-dependent reductase using sulfur anomalous signal 2003-12-10 2004-08-17 Agarwal, R.,Bonanno, J.B.,Burley, S.K.,Swaminathan, S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. ACTA CRYSTALLOGR.,SECT.D 2006 62 383 391 1RV9 Crystal Structure of Neisseria meningitidis protein NMB0706, Pfam DUF152 2003-12-13 2004-08-17 Eswaramoorthy, S.,Swaminathan, S. Crystal Structure of a hypothetical protein, NMB0706 To be Published 0 0 0 0 1RV9 Crystal Structure of Neisseria meningitidis protein NMB0706, Pfam DUF152 2003-12-13 2004-08-17 Eswaramoorthy, S.,Swaminathan, S. Crystal Structure of a hypothetical protein, NMB0706 To be Published 0 0 0 0 1SGJ Crystal structure of citrate lyase beta subunit 2004-02-23 2004-08-17 Eswaramoorthy, S.,Swaminathan, S. Crystal structure of citrate lyase beta subunit To be Published 0 0 0 0 1SGJ Crystal structure of citrate lyase beta subunit 2004-02-23 2004-08-17 Eswaramoorthy, S.,Swaminathan, S. Crystal structure of citrate lyase beta subunit To be Published 0 0 0 0 1SGM Crystal Structure of Hypothetical Protein YXAF 2004-02-24 2004-08-17 Seetharaman, J.,Kumaran, D.,Bonanno, J.B.,Burley, S.K.,Swaminathan, S. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins 2006 63 1087 1091 1SNA An Oligomeric Domain-Swapped Beta-Beta-Alpha Mini-Protein 2004-03-10 2004-08-17 Ali, M.H.,Peisach, E.,Allen, K.N.,Imperiali, B. X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture. Proc.Natl.Acad.Sci.Usa 2004 101 12183 12188 1SNE An Oligomeric Domain-Swapped Beta-Beta-Alpha Mini-Protein 2004-03-10 2004-08-17 Ali, M.H.,Peisach, E.,Allen, K.N.,Imperiali, B. X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture. Proc.Natl.Acad.Sci.Usa 2004 101 12183 12188 1U05 Crystal structure of protein yfiH from Shigella flexneri, Pfam DUF152 2004-07-12 2004-08-17 Seetharaman, J.,Swaminathan, S. Crystal Structure of Conserved Hypothetical Protein To be Published 0 0 0 0 1U8S Crystal structure of putative glycine cleavage system transcriptional repressor 2004-08-06 2004-08-17 Kumaran, D.,Swaminathan, S. Crystal structure of putative glycine cleavage system transcriptional repressor To be Published 0 0 0 0 1U0J Crystal Structure of AAV2 Rep40-ADP complex 2004-07-13 2004-08-24 James, J.A.,Aggarwal, A.K.,Linden, R.M.,Escalante, C.R. Structure of adeno-associated virus type 2 Rep40-ADP complex: Insight into nucleotide recognition and catalysis by superfamily 3 helicases Proc.Natl.Acad.Sci.USA 2004 101 12455 12460 1Q78 Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride 2003-08-16 2004-09-07 Martin, G.,Moglich, A.,Keller, W.,Doublie, S. Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. J.Mol.Biol. 2004 341 911 925 1Q79 CRYSTAL STRUCTURE OF MAMMALIAN POLY(A) POLYMERASE 2003-08-16 2004-09-07 Martin, G.,Moglich, A.,Keller, W.,Doublie, S. Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. J.Mol.Biol. 2004 341 911 925 1SA3 An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site 2004-02-06 2004-09-07 Xu, Q.S.,Kucera, R.B.,Roberts, R.J.,Guo, H.C. An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site. STRUCTURE 2004 12 1741 1747 1T2T Crystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator site 2004-04-22 2004-09-07 Edgell, D.R.,Derbyshire, V.,Van Roey, P.,LaBonne, S.,Stanger, M.J.,Li, Z.,Boyd, T.M.,Shub, D.A.,Belfort, M. Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor. Nat.Struct.Mol.Biol. 2004 11 936 944 1X94 Crystal Structure of a Hypothetical protein 2004-08-19 2004-09-14 Seetharaman, J.,Rajashankar, K.R.,Solorzano, V.,Kniewel, R.,Lima, C.D.,Bonanno, J.B.,Burley, S.K.,Swaminathan, S. Crystal structures of two putative phosphoheptose isomerases. Proteins 2006 63 1092 1096 1XFJ Crystal structure of protein CC_0490 from Caulobacter crescentus, Pfam DUF152 2004-09-14 2004-09-21 Krishnamurthy, N.R.,Kumaran, D.,Swaminathan, S. Crystal structure of a conserved hypothetical protein from Caulobacter crescentus To be Published 0 0 0 0 1T6J Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides 2004-05-06 2004-10-12 Calabrese, J.C.,Jordan, D.B.,Boodhoo, A.,Sariaslani, S.,Vannelli, T. Crystal structure of phenylalanine ammonia lyase: multiple helix dipoles implicated in catalysis. Biochemistry 2004 43 11403 11416 1T0A Crystal Structure of 2C-Methyl-D-Erythritol-2,4-cyclodiphosphate Synthase from Shewanella Oneidensis 2004-04-08 2004-10-26 Ni, S.,Robinson, H.,Marsing, G.C.,Bussiere, D.E.,Kennedy, M.A. Structure of 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase from Shewanella oneidensis at 1.6 A: identification of farnesyl pyrophosphate trapped in a hydrophobic cavity. Acta Crystallogr.,Sect.D 2004 60 1949 1957 1TYZ Crystal structure of 1-Aminocyclopropane-1-carboyxlate Deaminase from Pseudomonas 2004-07-08 2004-11-02 Karthikeyan, S.,Zhou, Q.,Zhao, Z.,Kao, C.L.,Tao, Z.,Robinson, H.,Liu, H.W.,Zhang, H. Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes:Insight into the mechanism of unique pyrodoxial-5'-phosphate dependent cyclopropane ring opening reaction Biochemistry 2004 43 13328 13339 1TZ2 Crystal structure of 1-aminocyclopropane-1-carboyxlate deaminase complexed with ACC 2004-07-09 2004-11-02 Karthikeyan, S.,Zhou, Q.,Zhao, Z.,Kao, C.L.,Tao, Z.,Robinson, H.,Liu, H.W.,Zhang, H. Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction Biochemistry 2004 43 13328 13339 1TZJ Crystal Structure of 1-aminocyclopropane-1-carboxylate deaminase complexed with d-vinyl glycine 2004-07-10 2004-11-02 Karthikeyan, S.,Zhou, Q.,Zhao, Z.,Kao, C.L.,Tao, Z.,Robinson, H.,Liu, H.W.,Zhang, H. Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction Biochemistry 2004 43 13328 13339 1TZK Crystal structure of 1-aminocyclopropane-1-carboxylate-deaminase complexed with alpha-keto-butyrate 2004-07-10 2004-11-02 Karthikeyan, S.,Zhou, Q.,Zhao, Z.,Kao, C.L.,Tao, Z.,Robinson, H.,Liu, H.W.,Zhang, H. Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction Biochemistry 2004 43 13328 13339 1TZM Crystal structure of ACC deaminase complexed with substrate analog b-chloro-D-alanine 2004-07-10 2004-11-02 Karthikeyan, S.,Zhou, Q.,Zhao, Z.,Kao, C.L.,Tao, Z.,Robinson, H.,Liu, H.W.,Zhang, H. Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction Biochemistry 2004 43 13328 13339 1U7H Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida 2004-08-03 2004-11-09 Goodman, J.L.,Wang, S.,Alam, S.,Ruzicka, F.J.,Frey, P.A.,Wedekind, J.E. Ornithine Cyclodeaminase: Structure, Mechanism of Action, and Implications for the u-Crystallin Family; Biochemistry 2004 43 13883 13891 1XNF Crystal structure of E.coli TPR-protein NlpI 2004-10-04 2004-11-16 Wilson, C.G.,Kajander, T.,Regan, L. The crystal structure of NlpI. A prokaryotic tetratricopeptide repeat protein with a globular fold. FEBS J. 2005 272 166 179 1XX9 Crystal Structure of the FXIa Catalytic Domain in Complex with EcotinM84R 2004-11-04 2004-11-16 Jin, L.,Pandey, P.,Babine, R.E.,Gorga, J.C.,Seidl, K.J.,Gelfand, E.,Weaver, D.T.,Abdel-Meguid, S.S.,Strickler, J.E. Crystal Structures of the FXIa Catalytic Domain in Complex with Ecotin Mutants Reveal Substrate-like Interactions J.Biol.Chem. 2005 280 4704 4712 1PV1 Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST 2003-06-26 2004-11-30 Legler, P.M.,Kumaran, D.,Swaminathan, S.,Studier, F.W.,Millard, C.B. Structural characterization and reversal of the natural organophosphate resistance of a D-type esterase, Saccharomyces cerevisiae S-formylglutathione hydrolase. Biochemistry 2008 47 9592 9601 1RJL Structure of the complex between OspB-CT and bactericidal Fab-H6831 2003-11-19 2004-11-30 Becker, M.,Bunikis, J.,Lade, B.D.,Dunn, J.J.,Barbour, A.G.,Lawson, C.L. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. J.Biol.Chem. 2005 280 17363 17370 1TXN Crystal structure of coproporphyrinogen III oxidase 2004-07-05 2004-11-30 Kumaran, D.,Swaminathan, S. Crystal structure of coproporphyrinogen III oxidase To be Published 0 0 0 0 1TXZ Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase, complexed with ADP-ribose 2004-07-06 2004-11-30 Kumaran, D.,Eswaramoorthy, S.,Studier, F.W.,Swaminathan, S. Structure and mechanism of ADP-ribose-1''-monophosphatase (Appr-1''-pase), a ubiquitous cellular processing enzyme. Protein Sci. 2005 14 719 726 1TY8 Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase, complexed with ADP 2004-07-07 2004-11-30 Kumaran, D.,Swaminathan, S. CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YMX7 To be Published 0 0 0 0 1X9N Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA 2004-08-23 2004-11-30 Pascal, J.M.,O'Brien, P.J.,Tomkinson, A.E.,Ellenberger, T. Human DNA ligase I completely encircles and partially unwinds nicked DNA. Nature 2004 432 473 478 1VQ2 CRYSTAL STRUCTURE OF T4-BACTERIOPHAGE DEOXYCYTIDYLATE DEAMINASE, MUTANT R115E 2004-12-15 2004-12-21 Almog, R.,Maley, F.,Maley, G.F.,Maccoll, R.,Van Roey, P. Three-Dimensional Structure of the R115E Mutant of T4-Bacteriophage 2'-Deoxycytidylate Deaminase Biochemistry 2004 43 13715 0 1YAV Crystal structure of CBS domain-containing protein ykuL from Bacillus subtilis 2004-12-17 2004-12-28 Kumaran, D.,Swaminathan, S. Crystal Structure of a hypothetical protein (ykul) containing CBS domains from Bacillus subtilis. To be Published 0 0 0 0 1YBE Crystal Structure of a Nicotinate phosphoribosyltransferase 2004-12-20 2005-01-11 Seetharaman, J.,Swaminathan, S. Crystal Structure of a Nicotinate phosphoribosyltransferase To be Published 0 0 0 0 1Y97 The human TREX2 3' exonuclease structure suggests a mechanism for efficient non-processive DNA catalysis 2004-12-14 2005-01-25 Perrino, F.W.,Harvey, S.,McMillin, S.,Hollis, T. The Human TREX2 3' -> 5'-Exonuclease Structure Suggests a Mechanism for Efficient Nonprocessive DNA Catalysis. J.Biol.Chem. 2005 280 15212 15218 1YGR Crystal structure of the tandem phosphatase domain of RPTP CD45 2005-01-05 2005-02-22 Nam, H.J.,Poy, F.,Saito, H.,Frederick, C.A. Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45. J.Exp.Med. 2005 201 441 452 1YGU Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide 2005-01-05 2005-02-22 Nam, H.J.,Poy, F.,Saito, H.,Frederick, C.A. Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45. J.Exp.Med. 2005 201 441 452 1YXW A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus neurotoxin 2005-02-22 2005-03-15 Jayaraman, S.,Eswaramoorthy, S.,Kumaran, D.,Swaminathan, S. Common binding site for disialyllactose and tri-peptide in C-fragment of tetanus neurotoxin Proteins 2005 61 288 295 1YYN A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus neurotoxin 2005-02-25 2005-03-15 Jayaraman, S.,Eswaramoorthy, S.,Kumaran, D.,Swaminathan, S. Common binding site for disialyllactose and tri-peptide in C-fragment of tetanus neurotoxin Proteins 2005 61 288 295 1YVG Structural analysis of the catalytic domain of tetanus neurotoxin 2005-02-15 2005-03-22 Rao, K.N.,Kumaran, D.,Binz, T.,Swaminathan, S. Structural analysis of the catalytic domain of tetanus neurotoxin. Toxicon 2005 45 929 939 1XSD Crystal structure of the BlaI repressor in complex with DNA 2004-10-19 2005-03-29 Safo, M.K.,Zhao, Q.,Ko, T.-P.,Musayev, F.N.,Robinson, H.,Scarsdale, N.,Wang, A.H.-J.,Archer, G.L. Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol. 2005 187 1833 1844 1YYQ Y305F Trichodiene Synthase complexed with pyrophosphate 2005-02-25 2005-03-29 Vedula, L.S.,Rynkiewicz, M.J.,Pyun, H.J.,Coates, R.M.,Cane, D.E.,Christianson, D.W. Molecular Recognition of the Substrate Diphosphate Group Governs Product Diversity in Trichodiene Synthase Mutants. Biochemistry 2005 44 6153 6163 1Z7I 2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC 2005-03-24 2005-04-05 Jiang, J.,Sheng, J.,Carrasco, N.,Huang, Z. Selenium derivatization of nucleic acids for crystallography. Nucleic Acids Res. 2007 35 477 485 1XF2 Structure of Fab DNA-1 complexed with dT3 2004-09-13 2005-04-12 Schuermann, J.P.,Prewitt, S.P.,Davies, C.,Deutscher, S.L.,Tanner, J.J. Evidence for Structural Plasticity of Heavy Chain Complementarity-determining Region 3 in Antibody-ssDNA Recognition J.Mol.Biol. 2005 347 965 978 1ZCC Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58 2005-04-11 2005-05-03 Rao, K.N.,Bonanno, J.B.,Burley, S.K.,Swaminathan, S. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins 2006 65 514 518 1YIY Aedes aegypti kynurenine aminotransferase 2005-01-13 2005-05-10 Han, Q.,Gao, Y.G.,Robinson, H.,Ding, H.,Wilson, S.,Li, J. Crystal structures of Aedes aegypti kynurenine aminotransferase. FEBS J. 2005 272 2198 2206 1YIZ Aedes aegypti kynurenine aminotrasferase 2005-01-13 2005-05-10 Han, Q.,Gao, Y.G.,Robinson, H.,Ding, H.,Wilson, S.,Li, J. Crystal structures of Aedes aegypti kynurenine aminotransferase. FEBS J. 2005 272 2198 2206 1VRR Crystal structure of the restriction endonuclease BstYI complex with DNA 2005-06-02 2005-06-07 Townson, S.A.,Samuelson, J.C.,Xu, S.Y.,Aggarwal, A.K. Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence. Structure 2005 13 791 801 1S9K Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site 2004-02-04 2005-06-14 Wang, D.,Stroud, J.C.,Chen, L. Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site To be Published 0 0 0 0 1ZKW Crystal structure of Arg347Ala mutant of botulinum neurotoxin E catalytic domain 2005-05-04 2005-06-28 Agarwal, R.,Binz, T.,Swaminathan, S. Analysis of Active Site Residues of Botulinum Neurotoxin E by Mutational, Functional, and Structural Studies: Glu335Gln Is an Apoenzyme. Biochemistry 2005 44 8291 8302 1YT3 Crystal Structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing 2005-02-09 2005-08-09 Zuo, Y.,Wang, Y.,Malhotra, A. Crystal Structure of Escherichia coli RNase D, an Exoribonuclease Involved in Structured RNA Processing Structure 2005 13 973 984 1Z7N ATP Phosphoribosyl transferase (HisZG ATP-PRTase) from Lactococcus lactis with bound PRPP substrate 2005-03-25 2005-08-09 Champagne, K.S.,Sissler, M.,Larrabee, Y.,Doublie, S.,Francklyn, C.S. ATP Phosphoribosyl transferase (HisZG ATP-PRTase) from Lactococcus lactis with bound PRPP substrate To be Published 0 0 0 0 1XCV Crystal Structure Of (H79AC102D)Dtxr complexed with Nickel(II) 2004-09-03 2005-08-16 Daquino, J.A.,Ringe, D. Crystal Structure Of (H79AC102D)Dtxr complexed with Nickel(II) To be Published 0 0 0 0 1ZHM Crystal Structure of the Catalytic Domain of the Coagulation Factor XIa in Complex with Benzamidine (S434A-T475A-K437 Mutant) 2005-04-26 2005-09-20 Jin, L.,Pandey, P.,Babine, R.E.,Weaver, D.T.,Abdel-Meguid, S.S.,Strickler, J.E. Mutation of surface residues to promote crystallization of activated factor XI as a complex with benzamidine: an essential step for the iterative structure-based design of factor XI inhibitors. Acta Crystallogr.,Sect.D 2005 61 1418 1425 2B1B 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site 2005-09-15 2005-09-27 Berman, H.M.,Napoli, A.A. 5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site To be published 0 0 0 0 2B1C 5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site 2005-09-15 2005-09-27 Berman, H.M.,Napoli, A.A. 5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site To be published 0 0 0 0 2D45 Crystal structure of the MecI-mecA repressor-operator complex 2005-10-09 2005-10-25 Safo, M.K.,Ko, T.P.,Musayev, F.N.,Zhao, Q.,Wang, A.H.,Archer, G.L. Structure of the MecI repressor from Staphylococcus aureus in complex with the cognate DNA operator of mec. Acta Crystallogr.,Sect.F 2006 62 320 324 1YFI Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group 2005-01-02 2006-01-10 Xu, Q.S.,Roberts, R.J.,Guo, H.-C. Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure. Protein Sci. 2005 14 2590 2600 2FID Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin 2005-12-29 2006-02-07 Lee, S.,Tsai, Y.C.,Mattera, R.,Smith, W.J.,Kostelansky, M.S.,Weissman, A.M.,Bonifacino, J.S.,Hurley, J.H. Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5 Nat.Struct.Mol.Biol. 2006 13 264 271 2FIF Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin 2005-12-29 2006-02-07 Lee, S.,Tsai, Y.C.,Mattera, R.,Smith, W.J.,Kostelansky, M.S.,Weissman, A.M.,Bonifacino, J.S.,Hurley, J.H. Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5 Nat.Struct.Mol.Biol. 2006 13 264 271 2FD6 Structure of Human Urokinase Plasminogen Activator in Complex with Urokinase Receptor and an anti-upar antibody at 1.9 A 2005-12-13 2006-02-21 Huai, Q.,Mazar, A.P.,Kuo, A.,Parry, G.C.,Shaw, D.E.,Callahan, J.,Li, Y.,Yuan, C.,Bian, C.,Chen, L.,Furie, B.,Furie, B.C.,Cines, D.B.,Huang, M. Structure of human urokinase plasminogen activator in complex with its receptor Science 2006 311 656 659 2G59 Crystal Structure of the Catalytic Domain of Protein Tyrosine Phosphatase from Homo sapiens 2006-02-22 2006-03-14 Almo, S.C.,Bonanno, J.B.,Sauder, J.M.,Emtage, S.,Dilorenzo, T.P.,Malashkevich, V.,Wasserman, S.R.,Swaminathan, S.,Eswaramoorthy, S.,Agarwal, R.,Kumaran, D.,Madegowda, M.,Ragumani, S.,Patskovsky, Y.,Alvarado, J.,Ramagopal, U.A.,Faber-Barata, J.,Chance, M.R.,Sali, A.,Fiser, A.,Zhang, Z.Y.,Lawrence, D.S.,Burley, S.K. Structural genomics of protein phosphatases. J.Struct.Funct.Genom. 2007 8 121 140 2FUC Human alpha-Phosphomannomutase 1 with Mg2+ cofactor bound 2006-01-26 2006-03-21 Silvaggi, N.R.,Zhang, C.,Lu, Z.,Dai, J.,Dunaway-Mariano, D.,Allen, K.N. The X-ray crystal structures of human alpha-phosphomannomutase 1 reveal the structural basis of congenital disorder of glycosylation type 1a. J.Biol.Chem. 2006 281 14918 14926 2FUE Human alpha-Phosphomannomutase 1 with D-mannose 1-phosphate and Mg2+ cofactor bound 2006-01-26 2006-03-21 Silvaggi, N.R.,Zhang, C.,Lu, Z.,Dai, J.,Dunaway-Mariano, D.,Allen, K.N. The X-ray crystal structures of human alpha-phosphomannomutase 1 reveal the structural basis of congenital disorder of glycosylation type 1a. J.Biol.Chem. 2006 281 14918 14926 2F3H Mechanism of displacement of a catalytically essential loop from the active site of fructose-1,6-bisphosphatase 2005-11-21 2006-04-25 Iancu, C.V.,Mukund, S.,Choe, J.-Y.,Fromm, H.J.,Honzatko, R.B. Mechanism of displacement of a catalytically essential loop from the active site of fructose-1,6-bisphosphatase To be Published 0 0 0 0 2GI9 Backbone Conformational Constraints in a Microcrystalline U-15N-Labeled Protein by 3D Dipolar-Shift Solid-State NMR Spectroscopy 2006-03-28 2006-04-25 Franks, W.T.,Wylie, B.J.,Stellfox, S.A.,Rienstra, C.M. 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Proteins 2006 63 733 741 2A2Q Complex of Active-site Inhibited Human Coagulation Factor VIIa with Human Soluble Tissue Factor in the Presence of Ca2+, Mg2+, Na+, and Zn2+ 2005-06-22 2006-07-04 Bajaj, S.P.,Schmidt, A.E.,Agah, S.,Bajaj, M.S.,Padmanabhan, K. High resolution structures of p-aminobenzamidine- and benzamidine-VIIa/soluble tissue factor: unpredicted conformation of the 192-193 peptide bond and mapping of Ca2+, Mg2+, Na+, and Zn2+ sites in factor VIIa. J.Biol.Chem. 2006 281 24873 24888 2GU1 Crystal structure of a zinc containing peptidase from vibrio cholerae 2006-04-28 2006-07-04 Ragumani, S.,Kumaran, D.,Burley, S.K.,Swaminathan, S. Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae. Proteins 2008 72 1096 1103 2HC7 2'-selenium-T A-DNA [G(TSe)GTACAC] 2006-06-15 2006-07-04 Jiang, J.,Sheng, J.,Huang, Z. 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Biochemistry 2007 46 2842 2855 2HZG Crystal stucture of predicted Mandelate racemase from Rhodobacter sphaeroides 2006-08-08 2006-08-29 Ramagopal, U.A.,Toro, R.,Almo, S.C. Crystal structure of predicted Mandelate racemase from Rhodobacter sphaeroides To be Published 0 0 0 0 2I3O Crystal structure of gamma-glutamyl transferase related protein from Thermoplasma acidophilum 2006-08-19 20