PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 7JR3 SARS-CoV-2 3CL protease crystallized under reducing conditions 2020-08-11 2020-08-26 de Oliveira, R.R.,Nascimento, A.F.Z.,Zeri, A.C.M.,Trivella, D.B.B. SARS-CoV-2 3CL protease crystallized under reducing conditions. To be Published 0 0 0 0 7JR4 SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues 2020-08-11 2020-08-26 Nascimento, A.F.Z.,de Oliveira, R.R.,Zeri, A.C.M.,Trivella, D.B.B. SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues To be Published 0 0 0 0 7KFI 34174328 SARS-CoV-2 Main protease immature form - apo structure 2020-10-14 2020-10-28 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7KPH 34174328 SARS-CoV-2 Main Protease in mature form 2020-11-11 2020-11-18 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7KEG 37115000 Crystal structure from SARS-COV2 NendoU NSP15 2020-10-10 2020-12-02 Godoy, A.S.,Nakamura, A.M.,Douangamath, A.,Song, Y.,Noske, G.D.,Gawriljuk, V.O.,Fernandes, R.S.,Pereira, H.D.M.,Oliveira, K.I.Z.,Fearon, D.,Dias, A.,Krojer, T.,Fairhead, M.,Powell, A.,Dunnet, L.,Brandao-Neto, J.,Skyner, R.,Chalk, R.,Bajusz, D.,Bege, M.,Borbas, A.,Keseru, G.M.,von Delft, F.,Oliva, G. Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease. Nucleic Acids Res. 2023 0 0 0 7KVL 34174328 SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment 2020-11-28 2020-12-09 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7KVR 34174328 SARS-CoV-2 Main protease immature form - FMAX Library E09 fragment 2020-11-28 2020-12-09 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7LDX 34174328 SARS-CoV-2 Main protease immature form - F2X Entry Library E06 fragment 2021-01-14 2021-01-20 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7LFE 34174328 SARS-CoV-2 Main protease immature form - F2X Entry Library E03 fragment 2021-01-16 2021-02-03 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7LFP 34174328 SARS-CoV-2 Main protease immature form - F2X Entry Library G05 fragment 2021-01-18 2021-02-03 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7N5Z 34174328 SARS-CoV-2 Main protease C145S mutant 2021-06-07 2021-06-16 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. J.Mol.Biol. 2021 433 167118 167118 7N6N 34174328 SARS-CoV-2 Main protease C145S mutant in complex with N and C-terminal residues 2021-06-08 2021-06-16 Noske, G.D.,Nakamura, A.M.,Gawriljuk, V.O.,Fernandes, R.S.,Lima, G.M.A.,Rosa, H.V.D.,Pereira, H.D.,Zeri, A.C.M.,Nascimento, A.F.Z.,Freire, M.C.L.C.,Fearon, D.,Douangamath, A.,von Delft, F.,Oliva, G.,Godoy, A.S. A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process. 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J.Biol.Chem. 2023 299 103004 103004 8E26 36775130 Crystal Structure of SARS-CoV-2 Main Protease N142S mutant in complex with Nirmatrelvir 2022-08-14 2022-10-12 Noske, G.D.,de Souza Silva, E.,de Godoy, M.O.,Dolci, I.,Fernandes, R.S.,Guido, R.V.C.,Sjo, P.,Oliva, G.,Godoy, A.S. Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease. J.Biol.Chem. 2023 299 103004 103004 7SML 38224521 Crystal Structure of L-GALACTONO-1,4-LACTONE DEHYDROGENASE de Myrciaria dubia 2021-10-26 2022-11-02 Vargas, J.A.,Sculaccio, S.A.,Pinto, A.P.A.,Pereira, H.D.,Mendes, L.F.S.,Flores, J.F.,Cobos, M.,Castro, J.C.,Garratt, R.C.,Leonardo, D.A. Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit Camu-Camu. J.Exp.Bot. 2024 0 0 0 8D89 36322419 Crystal structure of a novel GH5 enzyme retrieved from capybara gut metagenome 2022-06-08 2022-11-02 Martins, M.P.,Morais, M.A.B.,Persinoti, G.F.,Galinari, R.H.,Yu, L.,Yoshimi, Y.,Passos Nunes, F.B.,Lima, T.B.,Barbieri, S.F.,Silveira, J.L.M.,Lombard, V.,Terrapon, N.,Dupree, P.,Henrissat, B.,Murakami, M.T. Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-beta-mannans. Acta Crystallogr D Struct Biol 2022 78 1358 1372 8EYJ 36941262 Crystal Structure of uncleaved SARS-CoV-2 Main Protease C145S mutant in complex with Nirmatrelvir 2022-10-27 2022-11-16 Noske, G.D.,Song, Y.,Fernandes, R.S.,Chalk, R.,Elmassoudi, H.,Koekemoer, L.,Owen, C.D.,El-Baba, T.J.,Robinson, C.V.,Oliva, G.,Godoy, A.S. An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition. Nat Commun 2023 14 1545 1545 8G6P 36944394 Crystal structure of Mycobacterium thermoresistibile MurE in complex with ADP and 2,6-Diaminopimelic acid 2023-02-15 2023-04-05 Rossini, N.O.,Silva, C.,Dias, M.V.B. The crystal structure of Mycobacterium thermoresistibile MurE ligase reveals the binding mode of the substrate m-diaminopimelate. J.Struct.Biol. 2023 215 107957 107957 8D8P Crystal structure of a novel fatty acid decarboxylase from Rothia nasimurium 2022-06-08 2023-05-17 Vieira, P.S.,Murakami, M.T.,Zanphorlin, L.M. Crystal structure of a novel fatty acid decarboxylase from Rothia nasimurium Proc.Natl.Acad.Sci.USA 2023 0 0 0 8FWN Crystal structure of SARS-CoV-2 papain-like protease C111S mutant 2023-01-23 2023-05-17 Bezerra, E.H.S.,Soprano, A.S.,Tonoli, C.C.C.,Prado, P.F.V.,da Silva, J.C.,Franchini, K.G.,Trivella, D.B.B.,Benedetti, C.E. Crystal structure of SARS-CoV-2 papain-like protease C111S mutant To Be Published 0 0 0 0 8F5D 37186837 Architecture of the MurE-MurF ligase bacterial cell wall biosynthesis complex 2022-11-14 2023-06-07 Shirakawa, K.T.,Sala, F.A.,Miyachiro, M.M.,Job, V.,Trindade, D.M.,Dessen, A. Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8DE5 37709188 Structure of glyceraldehyde-3-phosphate dehydrogenase from Paracoccidioides lutzii 2022-06-19 2023-06-21 Hernandez-Prieto, J.H.,Martini, V.P.,Iulek, J. Structure of glyceraldehyde-3-phosphate dehydrogenase from Paracoccidioides lutzii in complex with an aldonic sugar acid. Biochimie 2023 218 20 33 8SGD 37315820 Crystal Structure of CDC3(G) - CDC10(Delta 1-10) heterocomplex from Saccharomyces cerevisiae 2023-04-12 2023-06-28 Marques da Silva, R.,Christe Dos Reis Saladino, G.,Antonio Leonardo, D.,D'Muniz Pereira, H.,Andrea Sculaccio, S.,Paula Ulian Araujo, A.,Charles Garratt, R. A key piece of the puzzle: The central tetramer of the Saccharomyces cerevisiae septin protofilament and its implications for self-assembly. J.Struct.Biol. 2023 215 107983 107983 8FWP 37315820 Crystal Structure of CDC10 - CDC3 heterocomplex from Saccharomyces cerevisiae 2023-01-23 2023-07-05 Marques da Silva, R.,Christe Dos Reis Saladino, G.,Antonio Leonardo, D.,D'Muniz Pereira, H.,Andrea Sculaccio, S.,Paula Ulian Araujo, A.,Charles Garratt, R. A key piece of the puzzle: The central tetramer of the Saccharomyces cerevisiae septin protofilament and its implications for self-assembly. J.Struct.Biol. 2023 215 107983 107983 8SPK 37574805 Crystal structure of Antarctic PET-degrading enzyme 2023-05-03 2023-08-23 Blazquez-Sanchez, P.,Vargas, J.A.,Furtado, A.A.,Grinen, A.,Leonardo, D.A.,Sculaccio, S.A.,Pereira, H.D.,Sonnendecker, C.,Zimmermann, W.,Diez, B.,Garratt, R.C.,Ramirez-Sarmiento, C.A. Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange. Protein Sci. 2023 32 0 0 8T3I 38287568 Crystal structure of mutant exfoliative toxin C (ExhC) from Mammaliicoccus sciuri 2023-06-07 2023-11-08 Gismene, C.,Gonzalez, J.E.H.,de Freitas Calmon, M.,Nascimento, A.F.Z.,Santisteban, A.R.N.,Calil, F.A.,da Silva, A.D.T.,Rahal, P.,Goes, R.M.,Arni, R.K.,Mariutti, R.B. Necrotic activity of ExhC from Mammaliicoccus sciuri is mediated by specific amino acid residues. Int.J.Biol.Macromol. 2024 254 127741 127741 8T3J 38287568 Crystal structure of native exfoliative toxin C (ExhC) from Mammaliicoccus sciuri 2023-06-07 2023-11-08 Gismene, C.,Gonzalez, J.E.H.,de Freitas Calmon, M.,Nascimento, A.F.Z.,Santisteban, A.R.N.,Calil, F.A.,da Silva, A.D.T.,Rahal, P.,Goes, R.M.,Arni, R.K.,Mariutti, R.B. Necrotic activity of ExhC from Mammaliicoccus sciuri is mediated by specific amino acid residues. Int.J.Biol.Macromol. 2024 254 127741 127741 8UWV Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21) 2023-11-08 2023-11-22 Sastre, D.E.,Navarro, M.V.A.S.,Sundberg, E.J. Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21) To Be Published 0 0 0 0 8FWO Crystal structure of SARS-CoV-2 papain-like protease 2023-01-23 2024-01-31 Bezerra, E.H.S.,Soprano, A.S.,Tonoli, C.C.C.,Prado, P.F.V.,da Silva, J.C.,Franchini, K.G.,Trivella, D.B.B.,Benedetti, C.E. Crystal structure of SARS-CoV-2 papain-like protease To Be Published 0 0 0 0 8G1H Ancestral protein AncTh of Phosphomethylpirimidine kinases family 2023-02-02 2024-02-07 Perez, M.,Munoz, S.,Cea, P.,Castro-Fernandez, V. Ancestral protein AncTh of Phosphomethylpyrimidine kinases To Be Published 0 0 0 0 8SCC 38224521 Crystal Structure of L-galactose 1-dehydrogenase de Myrciaria dubia 2023-04-05 2024-03-13 Vargas, J.A.,Sculaccio, S.A.,Pinto, A.P.A.,Pereira, H.D.,Mendes, L.F.S.,Flores, J.F.,Cobos, M.,Castro, J.C.,Garratt, R.C.,Leonardo, D.A. Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit camu-camu. J.Exp.Bot. 2024 75 2754 2771 8SKB 38224521 Crystal Structure of GDP-mannose 3,5 epimerase de Myrciaria dubia in complex with NAD 2023-04-19 2024-03-13 Vargas, J.A.,Sculaccio, S.A.,Pinto, A.P.A.,Pereira, H.D.,Mendes, L.F.S.,Flores, J.F.,Cobos, M.,Castro, J.C.,Garratt, R.C.,Leonardo, D.A. Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit camu-camu. J.Exp.Bot. 2024 75 2754 2771 8USU 38224521 Crystal Structure of L-galactose 1-dehydrogenase of Myrciaria dubia in complex with NAD 2023-10-30 2024-03-13 Vargas, J.A.,Sculaccio, S.A.,Pinto, A.P.A.,Pereira, H.D.,Mendes, L.F.S.,Flores, J.F.,Cobos, M.,Castro, J.C.,Garratt, R.C.,Leonardo, D.A. Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit camu-camu. J.Exp.Bot. 2024 75 2754 2771 8GIL L-threonine 3-Dehydrogenase from Trypanosoma cruzi (apo form) 2023-03-14 2024-03-20 Faria, J.N.,Mercaldi, G.F.,Fagundes, M.,Eufrasio, A.G.,Cordeiro, A.T. 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