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To be published 0 0 0 0 3D36 19101565 How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda 2008-05-09 2009-01-13 Bick, M.J.,Lamour, V.,Rajashankar, K.R.,Gordiyenko, Y.,Robinson, C.V.,Darst, S.A. How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda J.Mol.Biol. 2009 386 163 177 3F8U 19119025 Tapasin/ERp57 heterodimer 2008-11-13 2009-01-13 Dong, G.,Wearsch, P.A.,Peaper, D.R.,Cresswell, P.,Reinisch, K.M. Insights into MHC class I peptide loading from the structure of the tapasin-ERp57 thiol oxidoreductase heterodimer. Immunity 2009 30 21 32 3F2T 19169240 Crystal structure of the FMN riboswitch bound to FMN, iridium hexamine soak. 2008-10-30 2009-01-27 Serganov, A.,Huang, L.,Patel, D.J. Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch. 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The Antiviral Mechanism of an Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment. MBio 2016 7 0 0 5TU8 27872164 Crystal structure of Staphylococcus epidermidis Aap G58-spacer-G513* (variant G5-spacer-variant G5) 2016-11-05 2016-12-21 Shelton, C.L.,Conrady, D.G.,Herr, A.B. Functional consequences of B-repeat sequence variation in the staphylococcal biofilm protein Aap: deciphering the assembly code. Biochem. J. 2017 474 427 443 5SWW 27991903 Crystal Structure of Human APOBEC3A complexed with ssDNA 2016-08-09 2016-12-28 Shi, K.,Carpenter, M.A.,Banerjee, S.,Shaban, N.M.,Kurahashi, K.,Salamango, D.J.,McCann, J.L.,Starrett, G.J.,Duffy, J.V.,Demir, O.,Amaro, R.E.,Harki, D.A.,Harris, R.S.,Aihara, H. Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol. 2017 24 131 139 5T77 28024149 Crystal structure of the MOP flippase MurJ 2016-09-02 2016-12-28 Kuk, A.C.,Mashalidis, E.H.,Lee, S.Y. 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To Be Published 0 0 0 0 5HAT Structure function studies of R. palustris RubisCO (S59F/M331A mutant; CABP-bound) 2015-12-30 2017-01-04 Arbing, M.A.,Satagopan, S.,Varaljay, V.A.,Leong, J.G.,Tabita, F.R. Structure function studies of R. palustris RubisCO. To Be Published 0 0 0 0 5HBD Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group C2 2015-12-31 2017-01-04 Sawaya, M.R.,Hochschild, A.,Heller, D.M.,McPartland, L.,Eisenberg, D.S. Green Fluorescent Protein Fusion that Self Assembles as Polar Filaments to be published 0 0 0 0 5U1L 27935479 Crystal structure of the ATP-gated P2X7 ion channel in the closed, apo state 2016-11-28 2017-01-04 Karasawa, A.,Kawate, T. Structural basis for subtype-specific inhibition of the P2X7 receptor. Elife 2016 5 0 0 5U2H 27935479 Crystal structure of the ATP-gated P2X7 ion channel bound to ATP and allosteric antagonist A804598 2016-11-30 2017-01-04 Karasawa, A.,Kawate, T. Structural basis for subtype-specific inhibition of the P2X7 receptor. Elife 2016 5 0 0 5HGE Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121 2016-01-08 2017-01-11 Sawaya, M.R.,Hochschild, A.,Heller, D.M.,McPartland, L.,Eisenberg, D.S. Green Fluorescent Protein Fusion that Self Assembles as Polar Filaments to be published 0 0 0 0 5TF6 28045380 Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core 2016-09-24 2017-01-11 Montemayor, E.J.,Didychuk, A.L.,Liao, H.,Hu, P.,Brow, D.A.,Butcher, S.E. Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core. Acta Crystallogr D Struct Biol 2017 73 1 8 5UBF 28031373 Crystal structure of the RctB domains 2-3, RctB-155-483 2016-12-20 2017-01-11 Orlova, N.,Gerding, M.,Ivashkiv, O.,Olinares, P.D.B.,Chait, B.T.,Waldor, M.K.,Jeruzalmi, D. 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Protein Sci. 2020 29 2201 2212 6XPK 32885887 CutR Screw, form 1 with 41.9 angstrom pitch 2020-07-08 2020-07-22 Ochoa, J.M.,Nguyen, V.N.,Nie, M.,Sawaya, M.R.,Bobik, T.A.,Yeates, T.O. Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci. 2020 29 2201 2212 6PXK 33472065 3.65 Angstroms resolution structure of HslU with an axial-channel plug 2019-07-26 2020-07-29 Baytshtok, V.,Fei, X.,Shih, T.T.,Grant, R.A.,Santos, J.C.,Baker, T.A.,Sauer, R.T. Heat activates the AAA+ HslUV protease by melting an axial autoinhibitory plug. Cell Rep 2021 34 108639 108639 6PXL 33472065 3.74 Angstroms resolution structure of HlsU with an axial-channel plug 2019-07-26 2020-07-29 Baytshtok, V.,Fei, X.,Shih, T.T.,Grant, R.A.,Santos, J.C.,Baker, T.A.,Sauer, R.T. Heat activates the AAA+ HslUV protease by melting an axial autoinhibitory plug. Cell Rep 2021 34 108639 108639 6PYE 32803970 Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with NR160 2019-07-29 2020-07-29 Ressing, N.,Sonnichsen, M.,Osko, J.D.,Scholer, A.,Schliehe-Diecks, J.,Skerhut, A.,Borkhardt, A.,Hauer, J.,Kassack, M.U.,Christianson, D.W.,Bhatia, S.,Hansen, F.K. Multicomponent Synthesis, Binding Mode, and Structure-Activity Relationship of Selective Histone Deacetylase 6 (HDAC6) Inhibitors with Bifurcated Capping Groups. J.Med.Chem. 2020 63 10339 10351 6VWY 32655979 Crystal structure of C45G/T50C D. vulgaris carbon monoxide dehydrogenase (anaerobic) 2020-02-20 2020-07-29 Wittenborn, E.C.,Guendon, C.,Merrouch, M.,Benvenuti, M.,Fourmond, V.,Leger, C.,Drennan, C.L.,Dementin, S. The Solvent-Exposed Fe-S D-Cluster Contributes to Oxygen-Resistance inDesulfovibrio vulgarisNi-Fe Carbon Monoxide Dehydrogenase. 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Acta Crystallogr.,Sect.F 2020 76 357 363 6VGS 32855421 Alpha-ketoisovalerate decarboxylase (KivD) from Lactococcus lactis, thermostable mutant 2020-01-08 2020-08-05 Sherkhanov, S.,Korman, T.P.,Chan, S.,Faham, S.,Liu, H.,Sawaya, M.R.,Hsu, W.T.,Vikram, E.,Cheng, T.,Bowie, J.U. Isobutanol production freed from biological limits using synthetic biochemistry. Nat Commun 2020 11 4292 4292 6VK6 32692178 Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase 2020-01-18 2020-08-05 Jones, J.C.,Banerjee, R.,Shi, K.,Aihara, H.,Lipscomb, J.D. Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. 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Chem Sci 2020 11 10638 10646 6TZL The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin 2019-08-12 2020-08-19 Schormann, N.,Deivanayagam, C. The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin To Be Published 0 0 0 0 6TZN 33131423 Structure of S. pombe telomerase accessory protein Pof8 C-terminal domain 2019-08-12 2020-08-19 Basu, R.,Eichhorn, C.D.,Cheng, R.,Peterson, R.D.,Feigon, J. Structure of S. pombe telomerase protein Pof8 C-terminal domain is an xRRM conserved among LARP7 proteins. Rna Biol. 2021 18 1181 1192 6UTV 32829286 E. coli sigma-S transcription initiation complex with a 6-nt RNA (""Fresh"" crystal soaked with CTP, UTP, GTP, and ddATP for 150 seconds) 2019-10-30 2020-08-26 Zuo, Y.,De, S.,Feng, Y.,Steitz, T.A. Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. Iscience 2020 23 101445 101445 6UTX 32829286 E. coli sigma-S transcription initiation complex with an empty bubble (""Old"" crystal) 2019-10-30 2020-08-26 Zuo, Y.,De, S.,Feng, Y.,Steitz, T.A. Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. Iscience 2020 23 101445 101445 6V0O 34358446 PRMT5 bound to the PBM peptide from pICln 2019-11-19 2020-08-26 Mulvaney, K.M.,Blomquist, C.,Acharya, N.,Li, R.,Ranaghan, M.J.,O'Keefe, M.,Rodriguez, D.J.,Young, M.J.,Kesar, D.,Pal, D.,Stokes, M.,Nelson, A.J.,Jain, S.S.,Yang, A.,Mullin-Bernstein, Z.,Columbus, J.,Bozal, F.K.,Skepner, A.,Raymond, D.,LaRussa, S.,McKinney, D.C.,Freyzon, Y.,Baidi, Y.,Porter, D.,Aguirre, A.J.,Ianari, A.,McMillan, B.,Sellers, W.R. Molecular basis for substrate recruitment to the PRMT5 methylosome. Mol.Cell 2021 81 3481 0 7JQM 32787108 Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution 2020-08-11 2020-08-26 Mardirossian, M.,Sola, R.,Beckert, B.,Valencic, E.,Collis, D.W.P.,Borisek, J.,Armas, F.,Di Stasi, A.,Buchmann, J.,Syroegin, E.A.,Polikanov, Y.S.,Magistrato, A.,Hilpert, K.,Wilson, D.N.,Scocchi, M. Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem. 2020 63 9590 9602 7JU0 RebH Variant 0S, Tryptamine 7-halogenase with bound tryptamine 2020-08-18 2020-08-26 Andorfer, M.A.,Yang, S.,He, C.Q.,Evans, D.,Girlich, A.M.,Vergara-Coll, J.,Sukumar, N.,Houk, K.N.,Lewis, J.C. Structural and Computational Analysis of Laboratory-Evolved Halogenases Reveals Molecular Details of Site-Selectivity To Be Published 0 0 0 0 6U6Z 33531504 Human SAMHD1 bound to deoxyribo(TG*TTCA)-oligonucleotide 2019-08-30 2020-09-02 Yu, C.H.,Bhattacharya, A.,Persaud, M.,Taylor, A.B.,Wang, Z.,Bulnes-Ramos, A.,Xu, J.,Selyutina, A.,Martinez-Lopez, A.,Cano, K.,Demeler, B.,Kim, B.,Hardies, S.C.,Diaz-Griffero, F.,Ivanov, D.N. Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification. Nat Commun 2021 12 731 731 6U6Z 33531504 Human SAMHD1 bound to deoxyribo(TG*TTCA)-oligonucleotide 2019-08-30 2020-09-02 Yu, C.H.,Bhattacharya, A.,Persaud, M.,Taylor, A.B.,Wang, Z.,Bulnes-Ramos, A.,Xu, J.,Selyutina, A.,Martinez-Lopez, A.,Cano, K.,Demeler, B.,Kim, B.,Hardies, S.C.,Diaz-Griffero, F.,Ivanov, D.N. Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification. Nat Commun 2021 12 731 731 6VJG 32826317 Csx3-I222 Crystal Form at 1.8 Angstrom Resolution 2020-01-15 2020-09-02 Brown, S.,Gauvin, C.C.,Charbonneau, A.A.,Burman, N.,Lawrence, C.M. Csx3 is a cyclic oligonucleotide phosphodiesterase associated with type III CRISPR-Cas that degrades the second messenger cA 4 . J.Biol.Chem. 2020 295 14963 14972 6WYO 32880591 Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) H82F F202Y double mutant complexed with Trichostatin A 2020-05-13 2020-09-02 Osko, J.D.,Christianson, D.W. Binding of inhibitors to active-site mutants of CD1, the enigmatic catalytic domain of histone deacetylase 6. Acta Crystallogr.,Sect.F 2020 76 428 437 6WT8 32877915 Structure of a STING-associated CdnE c-di-GMP synthase from Flavobacteriaceae sp. 2020-05-01 2020-09-09 Morehouse, B.R.,Govande, A.A.,Millman, A.,Keszei, A.F.A.,Lowey, B.,Ofir, G.,Shao, S.,Sorek, R.,Kranzusch, P.J. STING cyclic dinucleotide sensing originated in bacteria. Nature 2020 586 429 433 6XNV 32843560 CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES CBPB PROTEIN (LMO1009) IN COMPLEX WITH C-DI-AMP 2020-07-04 2020-09-09 Peterson, B.N.,Young, M.K.M.,Luo, S.,Wang, J.,Whiteley, A.T.,Woodward, J.J.,Tong, L.,Wang, J.D.,Portnoy, D.A. (p)ppGpp and c-di-AMP Homeostasis Is Controlled by CbpB in Listeria monocytogenes. Mbio 2020 11 0 0 6U9Q Crystal Structure Analysis of DNA-BCL11A Znf domain complex 2019-09-09 2020-09-16 Seo, H.-S.,Dhe-Paganon, S. Crystal Structure Analysis of TAF1 Bromodomain To Be Published 0 0 0 0 6UA3 Human Mcl-1 in complex with a modified Bim BH3 peptide 2019-09-10 2020-09-16 Mandal, T.,Grant, R.A.,Keating, A.E. Inhibitor peptides against Mcl-1 containing non-natural amino acids show potent apoptotic response. To Be Published 0 0 0 0 6UAB Human Mcl-1 in complex with a modified unnatural Bim BH3 peptide 2019-09-10 2020-09-16 Mandal, T.,Grant, R.A.,Keating, A.E. 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Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife 2020 9 0 0 6NWY 33016876 Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate) 2019-02-07 2020-10-14 Hoffer, E.,Hong, S.,Sunita, S.,Maehigashi, T.,Gonzalez Jnr, R.L.,Whitford, P.,Dunham, C.M. Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife 2020 9 0 0 6O3M 33016876 Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 2019-02-26 2020-10-14 Hoffer, E.,Hong, S.,Sunita, S.,Maehigashi, T.,Gonzalez Jnr, R.L.,Whitford, P.,Dunham, C.M. Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife 2020 9 0 0 6OSI 33016876 Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate) 2019-05-01 2020-10-14 Hoffer, E.,Hong, S.,Sunita, S.,Maehigashi, T.,Gonzalez Jnr, R.L.,Whitford, P.,Dunham, C.M. Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife 2020 9 0 0 6XKC 33398170 Crystal structure of E3 ligase 2020-06-26 2020-10-14 Yan, X.,Wang, X.,Li, Y.,Zhou, M.,Li, Y.,Song, L.,Mi, W.,Min, J.,Dong, C. Molecular basis for ubiquitin ligase CRL2 FEM1C -mediated recognition of C-degron. Nat.Chem.Biol. 2021 17 263 271 6UP0 33376189 Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin 2019-10-16 2020-10-21 Jeng, S.C.Y.,Trachman III, R.J.,Weissenboeck, F.,Truong, L.,Link, K.A.,Jepsen, M.D.E.,Knutson, J.R.,Andersen, E.S.,Ferre-D'Amare, A.R.,Unrau, P.J. Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. 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Nature 2021 599 507 512 7RQ9 34707295 Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution 2021-08-06 2021-10-13 Mitcheltree, M.J.,Pisipati, A.,Syroegin, E.A.,Silvestre, K.J.,Klepacki, D.,Mason, J.D.,Terwilliger, D.W.,Testolin, G.,Pote, A.R.,Wu, K.J.Y.,Ladley, R.P.,Chatman, K.,Mankin, A.S.,Polikanov, Y.S.,Myers, A.G. A synthetic antibiotic class overcoming bacterial multidrug resistance. Nature 2021 599 507 512 7S0L 34609847 Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, S723F 2021-08-30 2021-10-13 Ronnebaum, T.A.,Eaton, S.A.,Brackhahn, E.A.E.,Christianson, D.W. Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase. Biochemistry 2021 60 3162 3172 7S0M 34609847 Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, S723T, bound with non-productive isopentenyl diphosphate 2021-08-30 2021-10-13 Ronnebaum, T.A.,Eaton, S.A.,Brackhahn, E.A.E.,Christianson, D.W. Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase. Biochemistry 2021 60 3162 3172 7KG4 Recombinant Beta-2-Glycoprotein I antibody recognition loop mutant 2020-10-15 2021-10-20 Klenotic, P.A.,Yu, E.W. Beta-2-Glycoprotein I and its role in APS To be published 0 0 0 0 7KH6 1.45 Angstrom resolution internal aldimine crystal structure of the beta-Q114A mutant of TryptophanSynthase in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site 2020-10-20 2021-10-27 Hilario, E.,Dunn, M.F.,Mueller, L.J. 1.45 Angstrom resolution internal aldimine crystal structure of the beta-Q114A mutant of Tryptophan Synthase in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site. To be Published 0 0 0 0 7KI7 The external aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.75 Angstrom resolution in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site 2020-10-23 2021-10-27 Hilario, E.,Dunn, M.F.,Mueller, L.J. The external aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.75 Angstrom resolution in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site. To be Published 0 0 0 0 7S7K 34638814 Crystal structure of the EphB2 extracellular domain 2021-09-16 2021-10-27 Xu, Y.,Robev, D.,Saha, N.,Wang, B.,Dalva, M.B.,Xu, K.,Himanen, J.P.,Nikolov, D.B. The Ephb2 Receptor Uses Homotypic, Head-to-Tail Interactions within Its Ectodomain as an Autoinhibitory Control Mechanism. Int J Mol Sci 2021 22 0 0 7KMC The internal aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site 2020-11-02 2021-11-03 Hilario, E.,Dunn, M.F.,Mueller, L.J. The internal aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site To be Published 0 0 0 0 7M2K 34705497 CDC34A-Ubiquitin-2ab inhibitor complex 2021-03-16 2021-11-03 St-Cyr, D.,Ceccarelli, D.F.,Orlicky, S.,van der Sloot, A.M.,Tang, X.,Kelso, S.,Moore, S.,James, C.,Posternak, G.,Coulombe-Huntington, J.,Bertomeu, T.,Marinier, A.,Sicheri, F.,Tyers, M. Identification and optimization of molecular glue compounds that inhibit a noncovalent E2 enzyme-ubiquitin complex. Sci Adv 2021 7 0 0 7K3X 35637421 SGMGCIT segment 58-64 from Keratin-8 with G62C mutation 2020-09-14 2021-11-10 Murray, K.A.,Hughes, M.P.,Hu, C.J.,Sawaya, M.R.,Salwinski, L.,Pan, H.,French, S.W.,Seidler, P.M.,Eisenberg, D.S. Identifying amyloid-related diseases by mapping mutations in low-complexity protein domains to pathologies. Nat.Struct.Mol.Biol. 2022 29 529 536 7KII Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+ 2020-10-23 2021-11-17 Tompkins, K. Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+ to be published 0 0 0 0 7KIJ Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site 2020-10-23 2021-11-17 Tompkins, K. Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site to be published 0 0 0 0 7KIK Wheat dwarf virus Rep domain circular permutation complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+ 2020-10-23 2021-11-17 Tompkins, K. Wheat dwarf virus Rep domain circular permutation complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+ to be published 0 0 0 0 7KQ9 The aminoacrylate form of the beta-Q114A mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site 2020-11-13 2021-11-17 Hilario, E.,Dunn, M.F.,Mueller, L.J. The aminoacrylate form of the beta-Q114A mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site To be Published 0 0 0 0 7N34 34784509 Structure of Yersinia aleksiciae Cap15 cyclic dinucleotide receptor, crystal form 1 2021-05-31 2021-11-17 Duncan-Lowey, B.,McNamara-Bordewick, N.K.,Tal, N.,Sorek, R.,Kranzusch, P.J. Effector-mediated membrane disruption controls cell death in CBASS antiphage defense. Mol.Cell 2021 81 5039 0 7N35 34784509 Structure of Yersinia aleksiciae Cap15 cyclic dinucleotide receptor, crystal form 2 2021-05-31 2021-11-17 Duncan-Lowey, B.,McNamara-Bordewick, N.K.,Tal, N.,Sorek, R.,Kranzusch, P.J. Effector-mediated membrane disruption controls cell death in CBASS antiphage defense. Mol.Cell 2021 81 5039 0 7LIR 34819665 Structure of the invertebrate ALK GRD 2021-01-27 2021-11-24 Li, T.,Stayrook, S.E.,Tsutsui, Y.,Zhang, J.,Wang, Y.,Li, H.,Proffitt, A.,Krimmer, S.G.,Ahmed, M.,Belliveau, O.,Walker, I.X.,Mudumbi, K.C.,Suzuki, Y.,Lax, I.,Alvarado, D.,Lemmon, M.A.,Schlessinger, J.,Klein, D.E. Structural basis for ligand reception by anaplastic lymphoma kinase. Nature 2021 600 148 152 7MK7 34819665 Augmentor domain of augmentor-beta 2021-04-21 2021-11-24 Li, T.,Stayrook, S.E.,Tsutsui, Y.,Zhang, J.,Wang, Y.,Li, H.,Proffitt, A.,Krimmer, S.G.,Ahmed, M.,Belliveau, O.,Walker, I.X.,Mudumbi, K.C.,Suzuki, Y.,Lax, I.,Alvarado, D.,Lemmon, M.A.,Schlessinger, J.,Klein, D.E. Structural basis for ligand reception by anaplastic lymphoma kinase. Nature 2021 600 148 152 7RSJ 34779204 Structure of the VPS34 kinase domain with compound 14 2021-08-11 2021-11-24 Hu, D.X.,Patel, S.,Chen, H.,Wang, S.,Staben, S.T.,Dimitrova, Y.N.,Wallweber, H.A.,Lee, J.Y.,Chan, G.K.Y.,Sneeringer, C.J.,Prangley, M.S.,Moffat, J.G.,Wu, K.C.,Schutt, L.K.,Salphati, L.,Pang, J.,McNamara, E.,Huang, H.,Chen, Y.,Wang, Y.,Zhao, W.,Lim, J.,Murthy, A.,Siu, M. Structure-Based Design of Potent, Selective, and Orally Bioavailable VPS34 Kinase Inhibitors. J.Med.Chem. 2022 65 11500 11512 6S5I Structure of the Lausanne variant of myxoma virus M062 protein 2019-07-01 2021-12-01 O'Byrne, P.,Khan, A.R. Structure of the Lausanne variant of myxoma virus M062 protein To Be Published 0 0 0 0 7D5G Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism 2020-09-25 2021-12-01 Yang, R.J.,Feng, Y.H.,Andrew, J.F. Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism To Be Published 0 0 0 0 7D5G Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism 2020-09-25 2021-12-01 Yang, R.J.,Feng, Y.H.,Andrew, J.F. Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism To Be Published 0 0 0 0 7STY Crystal structure of human CORO1C 2021-11-15 2021-12-01 Zeng, H.,Dong, A.,Hutchinson, A.,Seitova, A.,Loppnau, P.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L.,Structural Genomics Consortium (SGC) Crystal structure of human CORO1C To Be Published 0 0 0 0 7SUL Crystal structure of the WD-repeat domain of human SEC31A 2021-11-17 2021-12-01 Zeng, H.,Dong, A.,Loppnau, P.,Hutchinson, A.,Seitova, A.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L.,Structural Genomics Consortium (SGC) Crystal structure of the WD-repeat domain of human SEC31A To Be Published 0 0 0 0 7SN0 34855508 Crystal structure of spike protein receptor binding domain of escape mutant SARS-CoV-2 from immunocompromised patient (d146*) in complex with human receptor ACE2 2021-10-27 2021-12-08 Nabel, K.G.,Clark, S.A.,Shankar, S.,Pan, J.,Clark, L.E.,Yang, P.,Coscia, A.,McKay, L.G.A.,Varnum, H.H.,Brusic, V.,Tolan, N.V.,Zhou, G.,Desjardins, M.,Turbett, S.E.,Kanjilal, S.,Sherman, A.C.,Dighe, A.,LaRocque, R.C.,Ryan, E.T.,Tylek, C.,Cohen-Solal, J.F.,Darcy, A.T.,Tavella, D.,Clabbers, A.,Fan, Y.,Griffiths, A.,Correia, I.R.,Seagal, J.,Baden, L.R.,Charles, R.C.,Abraham, J. Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain. Science 2022 375 0 0 7SN1 34855508 Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab 2021-10-27 2021-12-08 Nabel, K.G.,Clark, S.A.,Shankar, S.,Pan, J.,Clark, L.E.,Yang, P.,Coscia, A.,McKay, L.G.A.,Varnum, H.H.,Brusic, V.,Tolan, N.V.,Zhou, G.,Desjardins, M.,Turbett, S.E.,Kanjilal, S.,Sherman, A.C.,Dighe, A.,LaRocque, R.C.,Ryan, E.T.,Tylek, C.,Cohen-Solal, J.F.,Darcy, A.T.,Tavella, D.,Clabbers, A.,Fan, Y.,Griffiths, A.,Correia, I.R.,Seagal, J.,Baden, L.R.,Charles, R.C.,Abraham, J. Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain. Science 2022 375 0 0 7KU9 The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site, two molecules of F6F inhibitor at the enzyme alpha-site and another F6F molecule at the enzyme beta-site at 1.40 Angstrom resolution 2020-11-24 2021-12-15 Hilario, E.,Dunn, M.F.,Mueller, L.J. The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site, two molecules of F6F inhibitor at the enzyme alpha-site and another F6F molecule at the enzyme beta-site at 1.40 Angstrom resolution. To be Published 0 0 0 0 7KUW 35286324 High-throughput design and refinement of stable proteins using sequence-only models 2020-11-25 2021-12-15 Singer, J.M.,Novotney, S.,Strickland, D.,Haddox, H.K.,Leiby, N.,Rocklin, G.J.,Chow, C.M.,Roy, A.,Bera, A.K.,Motta, F.C.,Cao, L.,Strauch, E.M.,Chidyausiku, T.M.,Ford, A.,Ho, E.,Zaitzeff, A.,Mackenzie, C.O.,Eramian, H.,DiMaio, F.,Grigoryan, G.,Vaughn, M.,Stewart, L.J.,Baker, D.,Klavins, E. Large-scale design and refinement of stable proteins using sequence-only models. Plos One 2022 17 0 0 7KWV The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.30 Angstrom resolution 2020-12-02 2021-12-15 Hilario, E.,Dunn, M.F.,Mueller, L.J. The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.30 Angstrom resolution. To be Published 0 0 0 0 7KXC The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, sodium ion at the metal coordination site and benzimidazole (BZI) at the enzyme beta-site at 1.30 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring 2020-12-03 2021-12-15 Hilario, E.,Dunn, M.F.,Mueller, L.J. The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, sodium ion at the metal coordination site and benzimidazole (BZI) at the enzyme beta-site at 1.30 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring. To be Published 0 0 0 0 7SSE 37350740 Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70 2021-11-10 2021-12-15 Kimani, S.W.,Owen, J.,Green, S.R.,Li, F.,Li, Y.,Dong, A.,Brown, P.J.,Ackloo, S.,Kuter, D.,Yang, C.,MacAskill, M.,MacKinnon, S.S.,Arrowsmith, C.H.,Schapira, M.,Shahani, V.,Halabelian, L. Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets. 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The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, cesium ion at the metal coordination site and benzimidazole (BZI) at the enzyme beta-site at 1.35 Angstrom resolution. To be Published 0 0 0 0 7L6V 34990480 Crystal structure of BoNT/A-LC-JPU-A5-JPU-C1-JPU-H7-JPU-D12-ciA-F12 2020-12-24 2021-12-22 Lam, K.H.,Tremblay, J.M.,Perry, K.,Ichtchenko, K.,Shoemaker, C.B.,Jin, R. Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies. 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Biochemistry 2022 61 21 33 7SPO 34916516 Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 3B4 2021-11-02 2022-01-05 Ubah, O.C.,Lake, E.W.,Gunaratne, G.S.,Gallant, J.P.,Fernie, M.,Robertson, A.J.,Marchant, J.S.,Bold, T.D.,Langlois, R.A.,Matchett, W.E.,Thiede, J.M.,Shi, K.,Yin, L.,Moeller, N.H.,Banerjee, S.,Ferguson, L.,Kovaleva, M.,Porter, A.J.,Aihara, H.,LeBeau, A.M.,Barelle, C.J. Mechanisms of SARS-CoV-2 neutralization by shark variable new antigen receptors elucidated through X-ray crystallography. Nat Commun 2021 12 7325 7325 7SPP 34916516 Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 2C02 2021-11-02 2022-01-05 Ubah, O.C.,Lake, E.W.,Gunaratne, G.S.,Gallant, J.P.,Fernie, M.,Robertson, A.J.,Marchant, J.S.,Bold, T.D.,Langlois, R.A.,Matchett, W.E.,Thiede, J.M.,Shi, K.,Yin, L.,Moeller, N.H.,Banerjee, S.,Ferguson, L.,Kovaleva, M.,Porter, A.J.,Aihara, H.,LeBeau, A.M.,Barelle, C.J. 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J.Med.Chem. 2022 65 2342 2360 7RLM 34813955 Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein 2021-07-25 2022-01-19 Adams, M.C.,Schiltz, C.J.,Heck, M.L.,Chappie, J.S. Crystal structure of the potato leafroll virus coat protein and implications for viral assembly. J.Struct.Biol. 2021 214 107811 107811 7SLZ CRYSTAL STRUCTURE OF GID4 IN COMPLEX WITH BPF023596 2021-10-25 2022-01-19 Song, X.,Dong, A.,Calabrese, M.,Wang, F.,Owen, D.,Arrowsmith, C.H.,Edwards, A.M.,Min, J.,Structural Genomics Consortium (SGC) CRYSTAL STRUCTURE OF GID4 IN COMPLEX WITH BPF023596 To Be Published 0 0 0 0 7LGX The aminoacrylate form of mutant beta-K167T Salmonella typhimurium Tryptophan Synthase in complex with with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, benzimidazole (BZI) at the enzyme beta site and cesium ion at the metal coordination site at 1.80 Angstrom resolution 2021-01-21 2022-01-26 Hilario, E.,Dunn, M.F.,Mueller, L.J. 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Nat Commun 2022 13 1891 1891 7TIU 35393402 Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB46 2022-01-14 2022-05-04 Liu, H.,Iketani, S.,Zask, A.,Khanizeman, N.,Bednarova, E.,Forouhar, F.,Fowler, B.,Hong, S.J.,Mohri, H.,Nair, M.S.,Huang, Y.,Tay, N.E.S.,Lee, S.,Karan, C.,Resnick, S.J.,Quinn, C.,Li, W.,Shion, H.,Xia, X.,Daniels, J.D.,Bartolo-Cruz, M.,Farina, M.,Rajbhandari, P.,Jurtschenko, C.,Lauber, M.A.,McDonald, T.,Stokes, M.E.,Hurst, B.L.,Rovis, T.,Chavez, A.,Ho, D.D.,Stockwell, B.R. Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19. Nat Commun 2022 13 1891 1891 7TIV 35393402 Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB48 2022-01-14 2022-05-04 Liu, H.,Iketani, S.,Zask, A.,Khanizeman, N.,Bednarova, E.,Forouhar, F.,Fowler, B.,Hong, S.J.,Mohri, H.,Nair, M.S.,Huang, Y.,Tay, N.E.S.,Lee, S.,Karan, C.,Resnick, S.J.,Quinn, C.,Li, W.,Shion, H.,Xia, X.,Daniels, J.D.,Bartolo-Cruz, M.,Farina, M.,Rajbhandari, P.,Jurtschenko, C.,Lauber, M.A.,McDonald, T.,Stokes, M.E.,Hurst, B.L.,Rovis, T.,Chavez, A.,Ho, D.D.,Stockwell, B.R. Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19. Nat Commun 2022 13 1891 1891 7TIW 35393402 Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB54 2022-01-14 2022-05-04 Liu, H.,Iketani, S.,Zask, A.,Khanizeman, N.,Bednarova, E.,Forouhar, F.,Fowler, B.,Hong, S.J.,Mohri, H.,Nair, M.S.,Huang, Y.,Tay, N.E.S.,Lee, S.,Karan, C.,Resnick, S.J.,Quinn, C.,Li, W.,Shion, H.,Xia, X.,Daniels, J.D.,Bartolo-Cruz, M.,Farina, M.,Rajbhandari, P.,Jurtschenko, C.,Lauber, M.A.,McDonald, T.,Stokes, M.E.,Hurst, B.L.,Rovis, T.,Chavez, A.,Ho, D.D.,Stockwell, B.R. Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19. Nat Commun 2022 13 1891 1891 7TIX 35393402 Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB56 2022-01-14 2022-05-04 Liu, H.,Iketani, S.,Zask, A.,Khanizeman, N.,Bednarova, E.,Forouhar, F.,Fowler, B.,Hong, S.J.,Mohri, H.,Nair, M.S.,Huang, Y.,Tay, N.E.S.,Lee, S.,Karan, C.,Resnick, S.J.,Quinn, C.,Li, W.,Shion, H.,Xia, X.,Daniels, J.D.,Bartolo-Cruz, M.,Farina, M.,Rajbhandari, P.,Jurtschenko, C.,Lauber, M.A.,McDonald, T.,Stokes, M.E.,Hurst, B.L.,Rovis, T.,Chavez, A.,Ho, D.D.,Stockwell, B.R. Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19. 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J.Med.Chem. 2022 65 16589 16621 7U20 36599985 Crystal structure of human METTL1 and WDR4 complex 2022-02-22 2022-12-07 Li, J.,Wang, L.,Hahn, Q.,Nowak, R.P.,Viennet, T.,Orellana, E.A.,Roy Burman, S.S.,Yue, H.,Hunkeler, M.,Fontana, P.,Wu, H.,Arthanari, H.,Fischer, E.S.,Gregory, R.I. Structural basis of regulated m 7 G tRNA modification by METTL1-WDR4. Nature 2023 613 391 397 7U4I 36423641 Crystal structure of human GPX4-U46C-R152H in complex with CDS9 2022-02-28 2022-12-07 Liu, H.,Forouhar, F.,Lin, A.J.,Wang, Q.,Polychronidou, V.,Soni, R.K.,Xia, X.,Stockwell, B.R. Small-molecule allosteric inhibitors of GPX4. Cell Chem Biol 2022 29 1680 0 7U4J 36423641 Crystal structure of human GPX4-U46C-R152H in complex with TMT10 2022-02-28 2022-12-07 Liu, H.,Forouhar, F.,Lin, A.J.,Wang, Q.,Polychronidou, V.,Soni, R.K.,Xia, X.,Stockwell, B.R. Small-molecule allosteric inhibitors of GPX4. 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Chembiochem 2022 23 0 0 8CZF 36706751 Human BAK in complex with the dF2 peptide 2022-05-24 2023-01-11 Aguilar, F.,Yu, S.,Grant, R.A.,Swanson, S.,Ghose, D.,Su, B.G.,Sarosiek, K.A.,Keating, A.E. Peptides from human BNIP5 and PXT1 and non-native binders of pro-apoptotic BAK can directly activate or inhibit BAK-mediated membrane permeabilization. Structure 2023 31 265 0 8CZG 36706751 Human BAK in complex with the dF3 peptide 2022-05-24 2023-01-11 Aguilar, F.,Yu, S.,Grant, R.A.,Swanson, S.,Ghose, D.,Su, B.G.,Sarosiek, K.A.,Keating, A.E. Peptides from human BNIP5 and PXT1 and non-native binders of pro-apoptotic BAK can directly activate or inhibit BAK-mediated membrane permeabilization. Structure 2023 31 265 0 8CZH 36706751 Human BAK in complex with the dM2 peptide 2022-05-24 2023-01-11 Aguilar, F.,Yu, S.,Grant, R.A.,Swanson, S.,Ghose, D.,Su, B.G.,Sarosiek, K.A.,Keating, A.E. Peptides from human BNIP5 and PXT1 and non-native binders of pro-apoptotic BAK can directly activate or inhibit BAK-mediated membrane permeabilization. Structure 2023 31 265 0 8DQO 36737607 Crystal structure of Arabidopsis thaliana COSY 2022-07-19 2023-01-11 Kim, C.Y.,Mitchell, A.J.,Kastner, D.W.,Albright, C.E.,Gutierrez, M.A.,Glinkerman, C.M.,Kulik, H.J.,Weng, J.K. Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY. Nat Commun 2023 14 597 597 8DQP 36737607 Crystal structure of Arabidopsis thaliana COSY in complex with scopoletin 2022-07-19 2023-01-11 Kim, C.Y.,Mitchell, A.J.,Kastner, D.W.,Albright, C.E.,Gutierrez, M.A.,Glinkerman, C.M.,Kulik, H.J.,Weng, J.K. Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY. 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J.Biol.Chem. 2023 299 104634 104634 8FGY 36995121 Crystal structure of mutant Androgen Receptor ligand binding domain L702H/H875Y/F877L/T878A with DHT 2022-12-13 2023-04-12 Doamekpor, S.K.,Peng, P.,Xu, R.,Ma, L.,Tong, Y.,Tong, L. A partially open conformation of an androgen receptor ligand-binding domain with drug-resistance mutations. Acta Crystallogr.,Sect.F 2023 79 95 104 8FH0 36995121 Crystal structure of mutant Androgen Receptor ligand binding domain H875Y/F877L/T878A with DHT 2022-12-13 2023-04-12 Doamekpor, S.K.,Peng, P.,Xu, R.,Ma, L.,Tong, Y.,Tong, L. A partially open conformation of an androgen receptor ligand-binding domain with drug-resistance mutations. Acta Crystallogr.,Sect.F 2023 79 95 104 8FH1 36995121 Crystal structure of mutant Androgen Receptor ligand binding domain F877L/T878A with DHT 2022-12-13 2023-04-12 Doamekpor, S.K.,Peng, P.,Xu, R.,Ma, L.,Tong, Y.,Tong, L. 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Nat Commun 2023 14 1955 1955 8EQ5 37149146 Crystal structure of the N-terminal kinase domain of RSK2 in complex with SPRED2 (131-160) 2022-10-07 2023-04-26 Lopez, J.,Bonsor, D.A.,Sale, M.J.,Urisman, A.,Mehalko, J.L.,Cabanski-Dunning, M.,Castel, P.,Simanshu, D.K.,McCormick, F. The ribosomal S6 kinase 2 (RSK2)-SPRED2 complex regulates the phosphorylation of RSK substrates and MAPK signaling. J.Biol.Chem. 2023 299 104789 104789 7UQU Crystal Structure of Mouse Cadherin-23 EC9 2022-04-20 2023-05-03 Sandhu, J.S.,De La Torre, P.,Sotomayor, M. Crystal Structure of Mouse Cadherin-23 EC9 To be published 0 0 0 0 8E5S 37039477 X-ray structure of the Deinococcus radiodurans Nramp/MntH divalent transition metal transporter WT in an occluded state 2022-08-22 2023-05-03 Ray, S.,Berry, S.P.,Wilson, E.A.,Zhang, C.H.,Shekhar, M.,Singharoy, A.,Gaudet, R. High-resolution structures with bound Mn 2+ and Cd 2+ map the metal import pathway in an Nramp transporter. Elife 2023 12 0 0 8E6H 37039477 X-ray structure of the Deinococcus radiodurans Nramp/MntH divalent transition metal transporter A47W mutant in an occluded, manganese-bound state 2022-08-22 2023-05-03 Ray, S.,Berry, S.P.,Wilson, E.A.,Zhang, C.H.,Shekhar, M.,Singharoy, A.,Gaudet, R. High-resolution structures with bound Mn 2+ and Cd 2+ map the metal import pathway in an Nramp transporter. Elife 2023 12 0 0 8E6M 37039477 X-ray structure of the Deinococcus radiodurans Nramp/MntH divalent transition metal transporter WT in an inward-open, cadmium-bound state 2022-08-22 2023-05-03 Ray, S.,Berry, S.P.,Wilson, E.A.,Zhang, C.H.,Shekhar, M.,Singharoy, A.,Gaudet, R. High-resolution structures with bound Mn 2+ and Cd 2+ map the metal import pathway in an Nramp transporter. Elife 2023 12 0 0 8E6N 37039477 X-ray structure of the Deinococcus radiodurans Nramp/MntH divalent transition metal transporter G223W mutant in an outward-open, manganese-bound state 2022-08-22 2023-05-03 Ray, S.,Berry, S.P.,Wilson, E.A.,Zhang, C.H.,Shekhar, M.,Singharoy, A.,Gaudet, R. High-resolution structures with bound Mn 2+ and Cd 2+ map the metal import pathway in an Nramp transporter. Elife 2023 12 0 0 7SPQ Crystal structure of Burkholderia glumae toxoflavin biosynthesis protein ToxD 2021-11-03 2023-05-10 Fenwick, M.K.,Begley, T.P.,Ealick, S.E.,Philmus, B. Crystal structure of Burkholderia glumae toxoflavin biosynthesis protein ToxD To Be Published 0 0 0 0 7UYX 37667030 Structure of bacteriophage PA1c gp2 2022-05-07 2023-05-10 Enustun, E.,Deep, A.,Gu, Y.,Nguyen, K.T.,Chaikeeratisak, V.,Armbruster, E.,Ghassemian, M.,Villa, E.,Pogliano, J.,Corbett, K.D. Identification of the bacteriophage nucleus protein interaction network. Nat.Struct.Mol.Biol. 2023 30 1653 1662 8CXF 36995904 Crystal structure of an i-motif from the HRAS promoter region 2022-05-20 2023-05-10 Li, K.S.,Jordan, D.,Lin, L.Y.,McCarthy, S.E.,Schneekloth Jr., J.S.,Yatsunyk, L.A. Crystal Structure of an i-Motif from the HRAS Oncogene Promoter. Angew.Chem.Int.Ed.Engl. 2023 62 0 0 8DHC 36995904 Crystal structure of an i-motif from the HRAS promoter region 2022-06-27 2023-05-10 Li, K.S.,Jordan, D.,Lin, L.Y.,McCarthy, S.E.,Schneekloth Jr., J.S.,Yatsunyk, L.A. Crystal Structure of an i-Motif from the HRAS Oncogene Promoter. Angew.Chem.Int.Ed.Engl. 2023 62 0 0 8FHV 37344591 Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions 2022-12-15 2023-05-10 Passalacqua, L.F.M.,Banco, M.T.,Moon, J.D.,Li, X.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Intricate 3D architecture of a DNA mimic of GFP. Nature 2023 618 1078 1084 8FI1 37344591 Structure of Lettuce C20G bound to DFHO 2022-12-15 2023-05-10 Passalacqua, L.F.M.,Banco, M.T.,Moon, J.D.,Li, X.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Intricate 3D architecture of a DNA mimic of GFP. Nature 2023 618 1078 1084 8FI2 37344591 Structure of Lettuce C20T bound to DFHBI-1T 2022-12-15 2023-05-10 Passalacqua, L.F.M.,Banco, M.T.,Moon, J.D.,Li, X.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Intricate 3D architecture of a DNA mimic of GFP. Nature 2023 618 1078 1084 8FI7 37344591 Structure of Lettuce C20T bound to DFHO 2022-12-15 2023-05-10 Passalacqua, L.F.M.,Banco, M.T.,Moon, J.D.,Li, X.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Intricate 3D architecture of a DNA mimic of GFP. Nature 2023 618 1078 1084 8FI8 37344591 Structure of Lettuce C20T bound to DFAME 2022-12-15 2023-05-10 Passalacqua, L.F.M.,Banco, M.T.,Moon, J.D.,Li, X.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Intricate 3D architecture of a DNA mimic of GFP. Nature 2023 618 1078 1084 8G2F 38045046 Crystal Structure of PRMT3 with Compound II710 2023-02-03 2023-05-10 Deng, Y.,Song, X.,Iyamu, I.D.,Dong, A.,Min, J.,Huang, R. A unique binding pocket induced by a noncanonical SAH mimic to develop potent and selective PRMT inhibitors. Acta Pharm Sin B 2023 13 4893 4905 8CUC Crystal structure analysis of SALL4 zinc finger domain in complex with DNA 2022-05-17 2023-05-24 Seo, H.S.,Dhe-Paganon, S. Crystal Structure Analysis of SALL4 Zinc Finger domain in complex with DNA To Be Published 0 0 0 0 8E5D 37460895 Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine parked in the major groove 2022-08-21 2023-05-24 Yin, L.,Shi, K.,Aihara, H. Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA. 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Sci Adv 2023 9 0 0 8EYV 37221204 Structure of Beetroot dimer bound to DFHO 2022-10-28 2023-05-31 Passalacqua, L.F.M.,Starich, M.R.,Link, K.A.,Wu, J.,Knutson, J.R.,Tjandra, N.,Jaffrey, S.R.,Ferre-D'Amare, A.R. Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun 2023 14 2969 2969 8G1N 37096962 Structure of Campylobacter concisus PglC I57M/Q175M Variant with modeled C-terminus 2023-02-02 2023-05-31 Anderson, A.J.,Dodge, G.J.,Allen, K.N.,Imperiali, B. Co-conserved sequence motifs are predictive of substrate specificity in a family of monotopic phosphoglycosyl transferases. Protein Sci. 2023 32 0 0 8SRZ 37398489 Structure of a bacterial death-like domain from Lysobacter enzymogenes 2023-05-08 2023-06-07 Wein, T.,Johnson, A.G.,Millman, A.,Lange, K.,Yirmiya, E.,Hadary, R.,Garb, J.,Steinruecke, F.,Hill, A.B.,Kranzusch, P.J.,Sorek, R. CARD-like domains mediate anti-phage defense in bacterial gasdermin systems. 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Direct visualization of electric field-stimulated ion conduction in a potassium channel To Be Published 0 0 0 0 8FZB 37209825 Crystal structure of human FAM86A 2023-01-28 2023-06-21 Francis, J.W.,Shao, Z.,Narkhede, P.,Trinh, A.T.,Lu, J.,Song, J.,Gozani, O. The FAM86 domain of FAM86A confers substrate specificity to promote EEF2-Lys525 methylation. J.Biol.Chem. 2023 299 104842 104842 8FHL Structure of pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd 2022-12-14 2023-06-28 Custodio, J.M.F.,Baker, B.M. Structure of Pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd To Be Published 0 0 0 0 8FHU Structure of Pyruvate dehydrogenase phosphatase regulatory subunit epitope presented by H2-Dd 2022-12-15 2023-06-28 Custodio, J.M.F.,Baker, B.M. 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Biophysical and structural characterization of telomeric G-quadruplexes from Tetrahymena thermophila in complex with N-Methyl Mesoporphyrin IX To Be Published 0 0 0 0 8D79 Crystal structure of a four-tetrad, parallel, and Na+ stabilized Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX 2022-06-07 2023-07-05 Beseiso, D.,Chen, E.V.,Yatsunyk, L.A. Biophysical and structural characterization of telomeric G-quadruplexes from Tetrahymena thermophila in complex with N-Methyl Mesoporphyrin IX To Be Published 0 0 0 0 8EFM 37379839 Structure of coral STING receptor from Stylophora pistillata in complex with 2',3'-cGAMP 2022-09-08 2023-07-05 Li, Y.,Slavik, K.M.,Toyoda, H.C.,Morehouse, B.R.,de Oliveira Mann, C.C.,Elek, A.,Levy, S.,Wang, Z.,Mears, K.S.,Liu, J.,Kashin, D.,Guo, X.,Mass, T.,Sebe-Pedros, A.,Schwede, F.,Kranzusch, P.J. cGLRs are a diverse family of pattern recognition receptors in innate immunity. Cell 2023 186 3261 0 8EFN 37379839 Structure of Sp-STING3 from Stylophora pistillata coral in complex with 3',3'-cGAMP 2022-09-08 2023-07-05 Li, Y.,Slavik, K.M.,Toyoda, H.C.,Morehouse, B.R.,de Oliveira Mann, C.C.,Elek, A.,Levy, S.,Wang, Z.,Mears, K.S.,Liu, J.,Kashin, D.,Guo, X.,Mass, T.,Sebe-Pedros, A.,Schwede, F.,Kranzusch, P.J. cGLRs are a diverse family of pattern recognition receptors in innate immunity. Cell 2023 186 3261 0 8GJW 37379839 Structure of a cGAS-like receptor Cv-cGLR1 from C. virginica 2023-03-16 2023-07-05 Li, Y.,Slavik, K.M.,Toyoda, H.C.,Morehouse, B.R.,de Oliveira Mann, C.C.,Elek, A.,Levy, S.,Wang, Z.,Mears, K.S.,Liu, J.,Kashin, D.,Guo, X.,Mass, T.,Sebe-Pedros, A.,Schwede, F.,Kranzusch, P.J. cGLRs are a diverse family of pattern recognition receptors in innate immunity. Cell 2023 186 3261 0 8GJZ 37379839 Structure of a STING receptor from S. pistillata Sp-STING1 bound to 2'3'-cUA 2023-03-16 2023-07-05 Li, Y.,Slavik, K.M.,Toyoda, H.C.,Morehouse, B.R.,de Oliveira Mann, C.C.,Elek, A.,Levy, S.,Wang, Z.,Mears, K.S.,Liu, J.,Kashin, D.,Guo, X.,Mass, T.,Sebe-Pedros, A.,Schwede, F.,Kranzusch, P.J. cGLRs are a diverse family of pattern recognition receptors in innate immunity. Cell 2023 186 3261 0 8EK4 37364125 De novo designed ice-binding proteins from twist-constrained helices 2022-09-19 2023-07-12 de Haas, R.J.,Tas, R.P.,van den Broek, D.,Zheng, C.,Nguyen, H.,Kang, A.,Bera, A.K.,King, N.P.,Voets, I.K.,de Vries, R. De novo designed ice-binding proteins from twist-constrained helices. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8FC1 37452045 Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution 2022-12-01 2023-07-12 Chen, C.W.,Leimer, N.,Syroegin, E.A.,Dunand, C.,Bulman, Z.P.,Lewis, K.,Polikanov, Y.S.,Svetlov, M.S. Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A. Nat Commun 2023 14 4196 4196 8FC2 37452045 Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution 2022-12-01 2023-07-12 Chen, C.W.,Leimer, N.,Syroegin, E.A.,Dunand, C.,Bulman, Z.P.,Lewis, K.,Polikanov, Y.S.,Svetlov, M.S. Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A. Nat Commun 2023 14 4196 4196 8FC3 37452045 Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution 2022-12-01 2023-07-12 Chen, C.W.,Leimer, N.,Syroegin, E.A.,Dunand, C.,Bulman, Z.P.,Lewis, K.,Polikanov, Y.S.,Svetlov, M.S. Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A. Nat Commun 2023 14 4196 4196 7UQA 37438348 Crystal structure of the small Ultra-Red Fluorescent Protein (smURFP) 2022-04-19 2023-07-19 Maiti, A.,Buffalo, C.Z.,Saurabh, S.,Montecinos-Franjola, F.,Hachey, J.S.,Conlon, W.J.,Tran, G.N.,Hassan, B.,Walters, K.J.,Drobizhev, M.,Moerner, W.E.,Ghosh, P.,Matsuo, H.,Tsien, R.Y.,Lin, J.Y.,Rodriguez, E.A. Structural and photophysical characterization of the small ultra-red fluorescent protein. Nat Commun 2023 14 4155 4155 8GAJ 37416832 Crystal Structure of E. coli LptA in complex with Podisus maculiventris Thanatin 2023-02-23 2023-07-19 Huynh, K.,Kibrom, A.,Donald, B.R.,Zhou, P. Discovery, characterization, and redesign of potent antimicrobial thanatin orthologs from Chinavia ubica and Murgantia histrionica targeting E. coli LptA. J Struct Biol X 2023 8 100091 100091 8T8B 37433044 Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution 2023-06-22 2023-07-19 Thaler, J.,Syroegin, E.A.,Breuker, K.,Polikanov, Y.S.,Micura, R. Practical Synthesis of N -Formylmethionylated Peptidyl-tRNA Mimics. 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Nat Commun 2023 14 4196 4196 8FC5 37452045 Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution 2022-12-01 2023-07-26 Chen, C.W.,Leimer, N.,Syroegin, E.A.,Dunand, C.,Bulman, Z.P.,Lewis, K.,Polikanov, Y.S.,Svetlov, M.S. Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A. Nat Commun 2023 14 4196 4196 8FC6 37452045 Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution 2022-12-01 2023-07-26 Chen, C.W.,Leimer, N.,Syroegin, E.A.,Dunand, C.,Bulman, Z.P.,Lewis, K.,Polikanov, Y.S.,Svetlov, M.S. Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A. Nat Commun 2023 14 4196 4196 8SU3 37449555 F95S epi-Isozizaene Synthase: complex with 3 Mg2+, inorganic pyrophosphate, and benzyl triethyl ammonium cation 2023-05-11 2023-07-26 Eaton, S.A.,Christianson, D.W. Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry 2023 62 2301 2313 8SU4 37449555 F198S epi-Isozizaene Synthase: complex with 3 Mg2+, inorganic pyrophosphate, and benzyl triethyl ammonium cation 2023-05-11 2023-07-26 Eaton, S.A.,Christianson, D.W. Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry 2023 62 2301 2313 8TBX Crystal structure of human DDX1 helicase in complex with ADP 2023-06-29 2023-07-26 Zeng, H.,Dong, A.,Li, Y.,Yen, H.,Hejazi, Z.,Seitova, A.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L. Crystal structure of human DDX1 helicase in complex with ADP To be published 0 0 0 0 7TRH 38127922 Human antibody K03.28 in complex with the influenza hemagglutinin head domain of A/California/07/2009(H1N1)(X-181) 2022-01-28 2023-08-02 Simmons, H.C.,Watanabe, A.,Oguin Iii, T.H.,Van Itallie, E.S.,Wiehe, K.J.,Sempowski, G.D.,Kuraoka, M.,Kelsoe, G.,McCarthy, K.R. A new class of antibodies that overcomes a steric barrier to cross-group neutralization of influenza viruses. Plos Biol. 2023 21 0 0 7TRI 38127922 Human antibody S8V1-172 in complex with the influenza hemagglutinin head domain of A/Sydney/05/1997(H3N2) 2022-01-28 2023-08-02 Simmons, H.C.,Watanabe, A.,Oguin Iii, T.H.,Van Itallie, E.S.,Wiehe, K.J.,Sempowski, G.D.,Kuraoka, M.,Kelsoe, G.,McCarthy, K.R. A new class of antibodies that overcomes a steric barrier to cross-group neutralization of influenza viruses. Plos Biol. 2023 21 0 0 8SPH 37578233 Crystal structure of chimeric omicron RBD (strain XBB.1) complexed with human ACE2 2023-05-03 2023-08-02 Zhang, W.,Shi, K.,Geng, Q.,Herbst, M.,Wang, M.,Huang, L.,Bu, F.,Liu, B.,Aihara, H.,Li, F. Structural evolution of SARS-CoV-2 omicron in human receptor recognition. J.Virol. 2023 97 0 0 8EV6 37537169 Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs 2022-10-19 2023-08-09 Seely, S.M.,Parajuli, N.P.,De Tarafder, A.,Ge, X.,Sanyal, S.,Gagnon, M.G. Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun 2023 14 4666 4666 8EV7 37537169 Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs 2022-10-19 2023-08-09 Seely, S.M.,Parajuli, N.P.,De Tarafder, A.,Ge, X.,Sanyal, S.,Gagnon, M.G. Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun 2023 14 4666 4666 8T5I Crystal structure of human WDR5 in complex with MR4397 2023-06-13 2023-08-09 Kimani, S.,Dong, A.,Li, F.,Loppnau, P.,Ackloo, S.,Vedadi, M.,Brown, P.J.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L.,Structural Genomics Consortium (SGC) Crystal structure of human WDR5 in complex with MR4397 To be published 0 0 0 0 8E1E 36627259 Scaffolding protein functional sites using deep learning 2022-08-10 2023-08-16 Gerben, S.R.,Borst, A.J.,Hicks, D.R.,Moczygemba, I.,Feldman, D.,Coventry, B.,Yang, W.,Bera, A.K.,Miranda, M.,Kang, A.,Nguyen, H.,Baker, D. Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins. Biochemistry 2023 62 358 368 8EOX 37667012 Precisely patterned nanofibers made from extendable protein multiplexes 2022-10-04 2023-08-16 Bethel, N.P.,Borst, A.J.,Parmeggiani, F.,Bick, M.J.,Brunette, T.J.,Nguyen, H.,Kang, A.,Bera, A.K.,Carter, L.,Miranda, M.C.,Kibler, R.D.,Lamb, M.,Li, X.,Sankaran, B.,Baker, D. 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Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus To Be Published 0 0 0 0 8GH4 36917886 Complex of Adam 10 disentegrin cysteine rich domains with human monoclonal antibody 2023-03-09 2023-08-30 Saha, N.,Baek, D.S.,Mendoza, R.P.,Robev, D.,Xu, Y.,Goldgur, Y.,De La Cruz, M.J.,de Stanchina, E.,Janes, P.W.,Xu, K.,Dimitrov, D.S.,Nikolov, D.B. Fully human monoclonal antibody targeting activated ADAM10 on colorectal cancer cells. Biomed Pharmacother 2023 161 114494 114494 8EFX Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin 2022-09-09 2023-09-20 Negron Teron, K.N.,Das, C. Cocrystallization of ubiquitin-deubiquitinase complexes through disulfide linkage Acta Crystallogr.,Sect.D 2023 79 1044 1055 8EJP 37744032 Crystal structure of the homeodomain of Platypus sDUX in complex with DNA containing 5-Bromouracil 2022-09-18 2023-09-20 Bosnakovski, D.,Toso, E.A.,Ener, E.T.,Gearhart, M.D.,Yin, L.,Luttmann, F.F.,Magli, A.,Shi, K.,Kim, J.,Aihara, H.,Kyba, M. Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience 2023 26 107823 107823 8T9N 37756332 Bacillus subtilis RsgI GGG mutant 2023-06-24 2023-09-20 Brogan, A.P.,Habib, C.,Hobbs, S.J.,Kranzusch, P.J.,Rudner, D.Z. Bacterial SEAL domains undergo autoproteolysis and function in regulated intramembrane proteolysis. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8FJE 37770718 The five-repeat design E8 2022-12-19 2023-09-27 An, L.,Hicks, D.R.,Zorine, D.,Dauparas, J.,Wicky, B.I.M.,Milles, L.F.,Courbet, A.,Bera, A.K.,Nguyen, H.,Kang, A.,Carter, L.,Baker, D. 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Development and atomic structure of a new fluorescence-based sensor to probe heme transfer in bacterial pathogens. J.Inorg.Biochem. 2023 249 112368 112368 8FQ7 37801475 Nanobody with WIW inserted in CDR3 loop to Inhibit Growth of Alzheimer's Tau fibrils 2023-01-05 2023-10-04 Abskharon, R.,Pan, H.,Sawaya, M.R.,Seidler, P.M.,Olivares, E.J.,Chen, Y.,Murray, K.A.,Zhang, J.,Lantz, C.,Bentzel, M.,Boyer, D.R.,Cascio, D.,Nguyen, B.A.,Hou, K.,Cheng, X.,Pardon, E.,Williams, C.K.,Nana, A.L.,Vinters, H.V.,Spina, S.,Grinberg, L.T.,Seeley, W.W.,Steyaert, J.,Glabe, C.G.,Ogorzalek Loo, R.R.,Loo, J.A.,Eisenberg, D.S. Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils. Proc.Natl.Acad.Sci.USA 2023 120 0 0 8GD2 37713257 Crystal structure of human cellular retinol binding protein 1 in complex with N-methyl-1-{3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}-N-(2-thienylmethyl)methanamine 2023-03-03 2023-10-04 Plau, J.,Morgan, C.E.,Fedorov, Y.,Banerjee, S.,Adams, D.J.,Blaner, W.S.,Yu, E.W.,Golczak, M. Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms. Acs Chem.Biol. 2023 18 2309 2323 8GEM 37713257 Crystal structure of human cellular retinol binding protein 1 in complex with N-ethyl-N-({3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}methyl)-2-(1H-pyrazol-1-yl)ethanamine 2023-03-07 2023-10-04 Plau, J.,Morgan, C.E.,Fedorov, Y.,Banerjee, S.,Adams, D.J.,Blaner, W.S.,Yu, E.W.,Golczak, M. Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms. 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Biomolecules 2023 13 0 0 8ERJ 38308582 Crystal structure of Fub7 in complex with E-2-aminocrotonate 2022-10-12 2023-10-25 Liu, S.,Yeh, C.,Reavill, C.,Jones, B.,Zou, Y.,Hai, Y. Molecular and Structural Basis for C gamma-C Bond Formation by PLP-Dependent Enzyme Fub7. Angew.Chem.Int.Ed.Engl. 2024 63 0 0 8CUS 37845322 Accurate computational design of genetically encoded 3D protein crystals 2022-05-17 2023-11-01 Li, Z.,Wang, S.,Nattermann, U.,Bera, A.K.,Borst, A.J.,Yaman, M.Y.,Bick, M.J.,Yang, E.C.,Sheffler, W.,Lee, B.,Seifert, S.,Hura, G.L.,Nguyen, H.,Kang, A.,Dalal, R.,Lubner, J.M.,Hsia, Y.,Haddox, H.,Courbet, A.,Dowling, Q.,Miranda, M.,Favor, A.,Etemadi, A.,Edman, N.I.,Yang, W.,Weidle, C.,Sankaran, B.,Negahdari, B.,Ross, M.B.,Ginger, D.S.,Baker, D. Accurate computational design of three-dimensional protein crystals. 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Nat Mater 2023 22 1556 1563 8CUW 37845322 Accurate computational design of genetically encoded 3D protein crystals 2022-05-17 2023-11-01 Li, Z.,Wang, S.,Nattermann, U.,Bera, A.K.,Borst, A.J.,Yaman, M.Y.,Bick, M.J.,Yang, E.C.,Sheffler, W.,Lee, B.,Seifert, S.,Hura, G.L.,Nguyen, H.,Kang, A.,Dalal, R.,Lubner, J.M.,Hsia, Y.,Haddox, H.,Courbet, A.,Dowling, Q.,Miranda, M.,Favor, A.,Etemadi, A.,Edman, N.I.,Yang, W.,Weidle, C.,Sankaran, B.,Negahdari, B.,Ross, M.B.,Ginger, D.S.,Baker, D. Accurate computational design of three-dimensional protein crystals. 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Eur.J.Med.Chem. 2023 262 115894 115894 8SM3 37992757 Structure of Bacillus cereus VD045 Gabija GajA-GajB Complex 2023-04-25 2023-11-22 Antine, S.P.,Johnson, A.G.,Mooney, S.E.,Leavitt, A.,Mayer, M.L.,Yirmiya, E.,Amitai, G.,Sorek, R.,Kranzusch, P.J. Structural basis of Gabija anti-phage defence and viral immune evasion. Nature 2024 625 360 365 8SMD 37992756 Structure of Clostridium botulinum prophage Tad1 in complex with 1''-3' gcADPR 2023-04-26 2023-11-22 Yirmiya, E.,Leavitt, A.,Lu, A.,Ragucci, A.E.,Avraham, C.,Osterman, I.,Garb, J.,Antine, S.P.,Mooney, S.E.,Hobbs, S.J.,Kranzusch, P.J.,Amitai, G.,Sorek, R. Phages overcome bacterial immunity via diverse anti-defence proteins. Nature 2024 625 352 359 8SME 37992756 Structure of SPO1 phage Tad2 in apo state 2023-04-26 2023-11-22 Yirmiya, E.,Leavitt, A.,Lu, A.,Ragucci, A.E.,Avraham, C.,Osterman, I.,Garb, J.,Antine, S.P.,Mooney, S.E.,Hobbs, S.J.,Kranzusch, P.J.,Amitai, G.,Sorek, R. 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Nat Commun 2023 14 7985 7985 8FAH 38157856 Crystal structure of SARS-CoV-2 receptor binding domain in complex with SARS-CoV-2 reactive human antibody CR3022 2022-11-26 2023-12-13 Sankhala, R.S.,Dussupt, V.,Chen, W.H.,Bai, H.,Martinez, E.J.,Jensen, J.L.,Rees, P.A.,Hajduczki, A.,Chang, W.C.,Choe, M.,Yan, L.,Sterling, S.L.,Swafford, I.,Kuklis, C.,Soman, S.,King, J.,Corbitt, C.,Zemil, M.,Peterson, C.E.,Mendez-Rivera, L.,Townsley, S.M.,Donofrio, G.C.,Lal, K.G.,Tran, U.,Green, E.C.,Smith, C.,de Val, N.,Laing, E.D.,Broder, C.C.,Currier, J.R.,Gromowski, G.D.,Wieczorek, L.,Rolland, M.,Paquin-Proulx, D.,van Dyk, D.,Britton, Z.,Rajan, S.,Loo, Y.M.,McTamney, P.M.,Esser, M.T.,Polonis, V.R.,Michael, N.L.,Krebs, S.J.,Modjarrad, K.,Joyce, M.G. Antibody targeting of conserved sites of vulnerability on the SARS-CoV-2 spike receptor-binding domain. Structure 2024 32 131 0 8G1Z 37902787 Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with inhibitor Mz317 2023-02-03 2023-12-13 Sinatra, L.,Vogelmann, A.,Friedrich, F.,Tararina, M.A.,Neuwirt, E.,Colcerasa, A.,Konig, P.,Toy, L.,Yesiloglu, T.Z.,Hilscher, S.,Gaitzsch, L.,Papenkordt, N.,Zhai, S.,Zhang, L.,Romier, C.,Einsle, O.,Sippl, W.,Schutkowski, M.,Gross, O.,Bendas, G.,Christianson, D.W.,Hansen, F.K.,Jung, M.,Schiedel, M. Development of First-in-Class Dual Sirt2/HDAC6 Inhibitors as Molecular Tools for Dual Inhibition of Tubulin Deacetylation. J.Med.Chem. 2023 66 14787 14814 8G2H 38045046 Crystal Structure of PRMT4 with Compound YD1113 2023-02-03 2023-12-13 Deng, Y.,Song, X.,Iyamu, I.D.,Dong, A.,Min, J.,Huang, R. A unique binding pocket induced by a noncanonical SAH mimic to develop potent and selective PRMT inhibitors. 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Nat Commun 2023 14 8191 8191 8G6D 38227586 HSV-1 Nuclear Egress Complex (SUP; UL31-R229L) 2023-02-15 2024-01-10 Draganova, E.B.,Wang, H.,Wu, M.,Liao, S.,Vu, A.,Gonzalez-Del Pino, G.L.,Zhou, Z.H.,Roller, R.J.,Heldwein, E.E. The universal suppressor mutation restores membrane budding defects in the HSV-1 nuclear egress complex by stabilizing the oligomeric lattice. Plos Pathog. 2024 20 0 0 8GJG 38109936 De novo design of high-affinity protein binders to bioactive helical peptides 2023-03-15 2024-01-10 Vazquez Torres, S.,Leung, P.J.Y.,Venkatesh, P.,Lutz, I.D.,Hink, F.,Huynh, H.H.,Becker, J.,Yeh, A.H.,Juergens, D.,Bennett, N.R.,Hoofnagle, A.N.,Huang, E.,MacCoss, M.J.,Exposit, M.,Lee, G.R.,Bera, A.K.,Kang, A.,De La Cruz, J.,Levine, P.M.,Li, X.,Lamb, M.,Gerben, S.R.,Murray, A.,Heine, P.,Korkmaz, E.N.,Nivala, J.,Stewart, L.,Watson, J.L.,Rogers, J.M.,Baker, D. De novo design of high-affinity binders of bioactive helical peptides. 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Acta Crystallogr D Struct Biol 2024 80 270 278 8GDU 38358135 Crystal structure of a mutant methyl transferase from Methanosarcina acetivorans, Northeast Structural Genomics Consortium (NESG) Target MvR53-11M 2023-03-06 2024-01-24 Banayan, N.E.,Loughlin, B.J.,Singh, S.,Forouhar, F.,Lu, G.,Wong, K.H.,Neky, M.,Hunt, H.S.,Bateman Jr., L.B.,Tamez, A.,Handelman, S.K.,Price, W.N.,Hunt, J.F. Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution. Protein Sci. 2024 33 0 0 8VL7 Co-crystal structure of human TREX1 in complex with an inhibitor 2024-01-11 2024-01-24 Dehghani-Tafti, S.,Dong, A.,Li, Y.,Ackloo, S.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L. Co-crystal structure of human TREX1 in complex with an inhibitor To be published 0 0 0 0 8UVK 38323832 CosR DNA bound form II 2023-11-03 2024-01-31 Zhang, Z.,Yan, Y.,Pang, J.,Dai, L.,Zhang, Q.,Yu, E.W. Structural basis of DNA recognition of the Campylobacter jejuni CosR regulator. 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J.Chem.Inf.Model. 2024 64 1704 1718 8TD1 38411104 Structure of PYCR1 complexed with 3-(6-Oxa-9-azaspiro(4.5)decane-9-carbonyl)benzoic acid 2023-07-02 2024-03-06 Meeks, K.R.,Ji, J.,Protopopov, M.V.,Tarkhanova, O.O.,Moroz, Y.S.,Tanner, J.J. Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography. J.Chem.Inf.Model. 2024 64 1704 1718 8TJG Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ 2023-07-21 2024-03-06 Warren, G.,Shuman, S. Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+ To Be Published 0 0 0 0 8UJA 38513658 T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks 2023-10-11 2024-03-06 Meador, K.,Castells-Graells, R.,Aguirre, R.,Sawaya, M.R.,Arbing, M.A.,Sherman, T.,Senarathne, C.,Yeates, T.O. A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure 2024 0 0 0 8GB4 EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor 2023-02-24 2024-03-13 Beyett, T.S.,Eck, M.J. EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor To be published 0 0 0 0 8T48 The N4BP1 CUE-like domain in complex with linear di-Ubiquitin 2023-06-08 2024-03-13 Gitlin, A.D. N4BP1 coordinates IKK family crosstalk to limit inflammation To Be Published 0 0 0 0 8FG6 38503834 Design of amyloidogenic peptide traps 2022-12-12 2024-03-20 Sahtoe, D.D.,Andrzejewska, E.A.,Han, H.L.,Rennella, E.,Schneider, M.M.,Meisl, G.,Ahlrichs, M.,Decarreau, J.,Nguyen, H.,Kang, A.,Levine, P.,Lamb, M.,Li, X.,Bera, A.K.,Kay, L.E.,Knowles, T.P.J.,Baker, D. Design of amyloidogenic peptide traps. Nat.Chem.Biol. 2024 0 0 0 8GKJ Crystal Structure of the Murine MUC16 Specific Antibody AR9.6 2023-03-19 2024-03-20 Brooks, C.L.,Aguilar, E.N. Crystal Structure of the Murine MUC16 Specific Antibody AR9.6 To Be Published 0 0 0 0 8S9L 38453899 Structure of monomeric FAM111A SPD V347D Mutant 2023-03-29 2024-03-20 Palani, S.,Machida, Y.,Alvey, J.R.,Mishra, V.,Welter, A.L.,Cui, G.,Bragantini, B.,Botuyan, M.V.,Cong, A.T.Q.,Mer, G.,Schellenberg, M.J.,Machida, Y.J. Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes. Nat Commun 2024 15 2064 2064 8GM3 Vibrio harveyi Holo HphA 2023-03-24 2024-03-27 Shin, H.E.,Moraes, T.F. Heme Acquisition by Slam-dependent Hemophores in Gram-negative Bacteria To Be Published 0 0 0 0 8U5P Structure of Mango II aptamer bound to T01-6A-B 2023-09-12 2024-03-27 Passalacqua, L.F.M.,Ferre-D'Amare, A.R. Structure of Mango II aptamer bound to T01-6A-B To Be Published 0 0 0 0 8W3V Crystal structure of human WDR41 2024-02-22 2024-03-27 Hutchinson, A.,Dong, A.,Li, Y.,Seitova, A.,Bountra, C.,Arrowsmith, C.H.,Edwards, A.M.,Halabelian, L.,Structural Genomics Consortium (SGC) Crystal structure of human WDR41 To be published 0 0 0 0 8UIW yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N 2023-10-10 2024-04-10 Krochmal, D.,Roman, C.,Lewicka, A.,Shao, Y.,Piccirilli, J.A. Structural basis for promiscuity in ligand recognition by yjdF riboswitch Cell Discov 2024 10 37 0 8V52 38272035 Crystal structure of 2A10 Fab bound to Human TGF-beta3 2023-11-30 2024-04-10 Sun, T.,Vander Heiden, J.A.,Gao, X.,Yin, J.,Uttarwar, S.,Liang, W.C.,Jia, G.,Yadav, R.,Huang, Z.,Mitra, M.,Halpern, W.,Bender, H.S.,Brightbill, H.D.,Wu, Y.,Lupardus, P.,Ramalingam, T.,Arron, J.R. Isoform-selective TGF-beta 3 inhibition for systemic sclerosis. Med 2024 5 132 0 8SHR Crystal Structure of PRMT3 with Compound YD1-214 2023-04-14 2024-04-17 Song, X.,Dong, A.,Deng, Y.,Huang, R.,Arrowsmith, C.H.,Edwards, A.M.,Min, J.,Structural Genomics Consortium (SGC) Crystal Structure of PRMT3 with Compound YD1-214 To be published 0 0 0 0 8TWQ 38554102 Structure of bacteriophage lambda RexA protein 2023-08-21 2024-04-17 Adams, M.C.,Schiltz, C.J.,Sun, J.,Hosford, C.J.,Johnson, V.M.,Pan, H.,Borbat, P.P.,Freed, J.H.,Thomason, L.C.,Court, C.,Court, D.L.,Chappie, J.S. The crystal structure of bacteriophage lambda RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins. Nucleic Acids Res. 2024 0 0 0 8UDC Crystal structure of TcPINK1 in complex with CYC116 2023-09-28 2024-04-17 Shomali, T.,Rasool, S.,Croteau, N.,Veyron, S.,Truong, L.,Trempe, J.F. Structural Characterization of a small-molecule inhibitor of PINK1, a precursor tool compound for the study of Parkinson's disease To Be Published 0 0 0 0 8UWB 38582449 Crystal structure of PP2A PPP2R1A-PPP2CA-PPP2R5E phosphatase. 2023-11-06 2024-04-17 Wachter, F.,Nowak, R.P.,Ficarro, S.,Marto, J.,Fischer, E.S. Structural characterization of methylation-independent PP2A assembly guides Alphafold2Multimer prediction of family-wide PP2A complexes. J.Biol.Chem. 2024 0 107268 107268 8V9I 38513073 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with D-phenylalanine-derived triazole acetylphosphonate (D-PheTrAP) bound 2023-12-08 2024-04-24 Coco, L.B.,Toci, E.M.,Chen, P.Y.,Drennan, C.L.,Freel Meyers, C.L. Potent Inhibition of E. coli DXP Synthase by a gem -Diaryl Bisubstrate Analog. Acs Infect Dis. 2024 10 1312 1326