PDB_ID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1NNW hypothetical protein from Pyrococcus furiosus Pfu-1218608 2003-01-14 2003-02-11 Southeast Collaboratory for Structural Genomics Southeast Collaboratory for Structural Genomics: hypothetical protein from Pyrococcus furiosus Pfu-1218608 To be published 0 0 0 0 1OOE Structural Genomics of Caenorhabditis elegans : Dihydropteridine reductase 2003-03-03 2003-03-18 Symersky, J.,Li, S.,Carson, M.,Luo, D.,Luan, C.H.,Luo, M. Structural genomics of Caenorhabditis elegans: structure of dihydropteridine reductase. Proteins: Struct., Funct., Gen 2003 53 944 946 1MX9 Crystal Structure of Human Liver Carboxylesterase in complexed with naloxone methiodide, a heroin analogue 2002-10-01 2003-04-08 Bencharit, S.,Morton, C.L.,Xue, Y.,Potter, P.M.,Redinbo, M.R. Structural Basis of Heroin and Cocaine Metabolism by a Promiscuous Human Drug-Processing Enzyme Nat.Struct.Biol. 2003 10 349 356 1M65 YCDX PROTEIN 2002-07-12 2003-04-22 Teplyakov, A.,Obmolova, G.,Khil, P.P.,Howard, A.J.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET 2003 51 315 318 1M68 YCDX PROTEIN, TRINUCLEAR ZINC SITE 2002-07-14 2003-04-22 Teplyakov, A.,Obmolova, G.,Khil, P.P.,Howard, A.J.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET 2003 51 315 318 1OX0 The crystal structure of beta-ketoacyl-[acyl carrier protein] synthase II from Streptococcus pneumoniae 2003-03-31 2003-04-22 Price, A.C.,Rock, C.O.,White, S.W. The 1.3-Angstrom-Resolution Crystal Structure of beta-Ketoacyl-Acyl Carrier Protein Synthase II from Streptococcus pneumoniae. J.Bacteriol. 2003 185 4136 4143 1OXH The crystal structure of beta-ketoacyl-[acyl carrier protein] synthase II from Streptococcus Pneumoniae, Triclinic form 2003-04-02 2003-04-22 Price, A.C.,Rock, C.O.,White, S.W. The 1.3-Angstrom-Resolution Crystal Structure of beta-Ketoacyl-Acyl Carrier Protein Synthase II from Streptococcus pneumoniae. J.Bacteriol. 2003 185 4136 4143 1PGV Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain 2003-05-28 2003-06-10 Lu, S.,Symersky, J.,Li, S.,Carson, M.,Chen, L.,Meehan, E.,Luo, M. Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain Proteins: Struct., Funct., Gen 2004 56 384 386 1P5Z Structure of human dCK complexed with cytarabine and ADP-MG 2003-04-28 2003-07-01 Sabini, E.,Ort, S.,Monnerjahn, C.,Konrad, M.,Lavie, A. Structure of human dCK suggests strategies to improve anticancer and antiviral therapy Nat.Struct.Biol. 2003 10 513 519 1P62 Structure of human dCK complexed with gemcitabine and ADP-MG 2003-04-28 2003-07-01 Sabini, E.,Ort, S.,Monnerjahn, C.,Konrad, M.,Lavie, A. Structure of human dCK suggests strategies to improve anticancer and antiviral therapy Nat.Struct.Biol. 2003 10 513 519 1PZV Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans 2003-07-14 2003-07-22 Schormann, N.,Lin, G.,Li, S.,Symersky, J.,Qiu, S.,Finley, J.,Luo, D.,Stanton, A.,Carson, M.,Luo, M.,DeLucas, L.,Pruett, P.,Nagy, L.,Arabashi, A.,Gray, R.,Johnson, D.,Tsao, J.,Bunzel, B.,Huang, W.,Shang, Q.,Luan, C.-H.,Lu, S.,Zhang, J.,McKinstry, A.,Chen, H. Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans To be Published 0 0 0 0 1OPH NON-COVALENT COMPLEX BETWEEN ALPHA-1-PI-PITTSBURGH AND S195A TRYPSIN 2003-03-05 2003-08-05 Dementiev, A.,Simonovic, M.,Volz, K.,Gettins, P.G. Canonical inhibitor-like interactions explain reactivity of alpha1-proteinase inhibitor Pittsburgh and antithrombin with proteinases J.Biol.Chem. 2003 278 37881 37887 1OPH NON-COVALENT COMPLEX BETWEEN ALPHA-1-PI-PITTSBURGH AND S195A TRYPSIN 2003-03-05 2003-08-05 Dementiev, A.,Simonovic, M.,Volz, K.,Gettins, P.G. Canonical inhibitor-like interactions explain reactivity of alpha1-proteinase inhibitor Pittsburgh and antithrombin with proteinases J.Biol.Chem. 2003 278 37881 37887 1OQN Crystal structure of the phosphotyrosine binding domain (PTB) of mouse Disabled 1 (Dab1) 2003-03-10 2003-08-05 Yun, M.,Keshvara, L.,Park, C.-G.,Zhang, Y.-M.,Dickerson, J.B.,Zheng, J.,Rock, C.O.,Curran, T.,Park, H.-W. Crystal structures of the Dab homology domains of mouse disabled 1 and 2 J.Biol.Chem. 2003 278 36572 36581 1P3R Crystal structure of the phosphotyrosin binding domain(PTB) of mouse Disabled 1(Dab1) 2003-04-18 2003-08-05 Yun, M.,Keshvara, L.,Park, C.G.,Zhang, Y.M.,Dickerson, J.B.,Zheng, J.,Rock, C.O.,Curran, T.,Park, H.W. Crystal structures of the Dab homology domains of mouse disabled 1 and 2. J.Biol.Chem. 2003 278 36572 36581 1Q34 Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans 2003-07-28 2003-08-05 Schormann, N.,Lin, G.,Li, S.,Symersky, J.,Qiu, S.,Finley, J.,Luo, D.,Stanton, A.,Carson, M.,Luo, M. Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans To be Published 0 0 0 0 1QWK Structural genomics of Caenorhabditis Elegans: Hypothetical 35.2 kDa protein (aldose reductase family member) 2003-09-02 2003-09-16 Chen, L.,Zhou, X.E.,Meehan, E.J.,Symersky, J.,Lu, S.,Li, S.,Luo, M. Structural genomics of Caenorhabditis Elegans: Hypothetical 35.2 kDa protein (aldose reductase family member) To be published 0 0 0 0 1Q20 Crystal Structure of human cholesterol sulfotransferase (SULT2B1b) in the presence of PAP and pregnenolone 2003-07-23 2003-11-11 Lee, K.A.,Fuda, H.,Lee, Y.C.,Negishi, M.,Strott, C.A.,Pedersen, L.C. Crystal structure of human cholesterol sulfotransferase (SULT2B1b) in the presence of pregnenolone and 3'-phosphoadenosine 5'-phosphate. Rationale for specificity differences between prototypical SULT2A1 and the SULT2BG1 isoforms. J.Biol.Chem. 2003 278 44593 44599 1QZ0 Crystal Structure of the Yersinia Pestis Phosphatase YopH in Complex with a Phosphotyrosyl Mimetic-Containing Hexapeptide 2003-09-15 2003-11-25 Phan, J.,Lee, K.,Cherry, S.,Tropea, J.E.,Burke Jr., T.R.,Waugh, D.S. High-Resolution Structure of the Yersinia pestis Protein Tyrosine Phosphatase YopH in Complex with a Phosphotyrosyl Mimetic-Containing Hexapeptide Biochemistry 2003 42 13113 13121 1R9H Structural Genomics of C.elegans: FKBP-type Peptidylprolyl Isomerase 2003-10-29 2003-12-02 Li, S.,Finley, J.,Luan, C.-H.,Qiu, S.,Gray, R.,Shang, Q.,Luo, D.,Hongli, C.,Zhao, J.,Huang, W.-Y.,DeLucas, L.J.,Nagy, L.,Stanton, A.,Luo, M.,Symersky, J.,Schormann, N.,Lin, G.,Tsao, J.,Johnson, D.H.,Carson, W.M. Structural Genomics of C.elegans: FKBP-type Peptidylprolyl Isomerase To be Published 0 0 0 0 1P6F Structure of the human natural cytotoxicity receptor NKp46 2003-04-29 2003-12-09 Foster, C.E.,Colonna, M.,Sun, P.D. Crystal structure of the human natural killer (NK) cell activating receptor NKp46 reveals structural relationship to other leukocyte receptor complex immunoreceptors. J.Biol.Chem. 2003 278 46081 46086 1R4N APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex with ATP 2003-10-07 2003-12-23 Walden, H.,Podgorski, M.S.,Huang, D.T.,Miller, D.W.,Howard, R.J.,Minor, D.L.,Holton, J.M.,Schulman, B.A. The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol.Cell 2003 12 1427 1437 1ODO 1.85 A STRUCTURE OF CYP154A1 FROM STREPTOMYCES COELICOLOR A3(2) 2003-02-19 2004-01-02 Podust, L.M.,Bach, H.,Kim, Y.,Lamb, D.C.,Arase, M.,Sherman, D.H.,Kelly, S.L.,Waterman, M.R. Comparison of the 1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2) with the closely related CYP154C1 and CYPs from antibiotic biosynthetic pathways. Protein Sci. 2004 13 255 268 1RPU Crystal Structure of CIRV p19 bound to siRNA 2003-12-03 2004-01-13 Vargason, J.M.,Szittya, G.,Burgyan, J.,Hall, T.M.T. Size selective recognition of siRNA by an RNA silencing suppressor Cell (Cambridge,Mass.) 2003 115 799 811 1NMO Structural genomics, protein ybgI, unknown function 2003-01-10 2004-01-20 Ladner, J.E.,Obmolova, G.,Teplyakov, A.,Howard, A.J.,Khil, P.P.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site BMC Struct.Biol. 2003 3 7 0 1NMP Structural genomics, ybgI protein, unknown function 2003-01-10 2004-01-20 Ladner, J.E.,Obmolova, G.,Teplyakov, A.,Howard, A.J.,Khil, P.P.,Camerini-Otero, R.D.,Gilliland, G.L. Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site BMC Struct.Biol. 2003 3 7 0 1NNH Hypothetical protein from Pyrococcus furiosus Pfu-1801964 2003-01-13 2004-02-03 Southeast Collaboratory for Structural Genomics Hypothetical protein from Pyrococcus furiosus Pfu-1801964 To be published 0 0 0 0 1RZI Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab 2003-12-24 2004-02-03 Huang, C.C.,Venturi, M.,Majeed, S.,Moore, M.J.,Phogat, S.,Zhang, M.-Y.,Dimitrov, D.S.,Hendrickson, W.A.,Robinson, J.,Sodroski, J.,Wyatt, R.,Choe, H.,Farzan, M.,Kwong, P.D. Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA 2004 101 2706 2711 1RZ9 Crystal Structure of AAV Rep complexed with the Rep-binding sequence 2003-12-24 2004-02-17 Hickman, A.B.,Ronning, D.R.,Perez, Z.N.,Kotin, R.M.,Dyda, F. The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell 2004 13 403 414 1NNQ rubrerythrin from Pyrococcus furiosus Pfu-1210814 2003-01-14 2004-03-02 Tempel, W.,Liu, Z.-J.,Schubot, F.D.,Shah, A.,Weinberg, M.V.,Jenney Jr., F.E.,Arendall III, W.B.,Adams, M.W.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.-C. Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin Proteins 2004 57 878 882 1SCZ Improved structural model for the catalytic domain of E.coli dihydrolipoamide succinyltransferase 2004-02-12 2004-03-02 Schormann, N.,Symersky, J.,Carson, M.,Luo, M.,Tsao, J.,Johnson, D.,Huang, W.-Y.,Pruett, P.,Lin, G.,Li, S.,Qiu, S.,Arabashi, A.,Bunzel, B.,Luo, D.,Nagy, L.,Gray, R.,Luan, C.-H.,Zhang, Z.,Lu, S.,DeLucas, L. Improved structural model for the catalytic domain of E.coli dihydrolipoamide succinyltransferase To be Published 0 0 0 0 1PE9 MUTATIONS IN THE T1.5 LOOP OF PECTATE LYASE A 2003-05-21 2004-03-16 Dehdashti, S.J.,Doan, C.N.,Chao, K.L.,Yoder, M.D. Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16. Acta Crystallogr.,Sect.D 2003 59 1339 1342 1R46 Structure of human alpha-galactosidase 2003-10-03 2004-03-16 Garman, S.C.,Garboczi, D.N. The molecular defect leading to Fabry disease: structure of human alpha-galactosidase J.Mol.Biol. 2004 337 319 335 1R47 Structure of human alpha-galactosidase 2003-10-03 2004-03-16 Garman, S.C.,Garboczi, D.N. The molecular defect leading to Fabry disease: structure of human alpha-galactosidase J.Mol.Biol. 2004 337 319 335 1NJX THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE 2003-01-02 2004-03-30 Johnson, S.J.,Beese, L.S. Structures of mismatch replication errors observed in a DNA polymerase. Cell (Cambridge,Mass.) 2004 116 803 816 1RC7 Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution 2003-11-03 2004-03-30 Blaszczyk, J.,Gan, J.,Tropea, J.E.,Court, D.L.,Waugh, D.S.,Ji, X. Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure 2004 12 457 466 1VF6 2.1 Angstrom crystal structure of the PALS-1-L27N and PATJ L27 heterodimer complex 2004-04-09 2004-04-20 Li, Y.,Karnak, D.,Demeler, B.,Margolis, B.,Lavie, A. Structural basis for L27 domain-mediated assembly of signaling and cell polarity complexes. Embo J. 2004 23 2723 2733 1T7S Structural Genomics of Caenorhabditis elegans: Structure of BAG-1 protein 2004-05-10 2004-05-18 Symersky, J.,Zhang, Y.,Schormann, N.,Li, S.,Bunzel, R.,Pruett, P.,Luan, C.H.,Luo, M. Structural genomics of Caenorhabditis elegans: structure of the BAG domain. Acta Crystallogr.,Sect.D 2004 60 1606 1610 1QX2 X-ray Structure of Calcium-loaded Calbindomodulin (A Calbindin D9k Re-engineered to Undergo a Conformational Opening) at 1.44 A Resolution 2003-09-04 2004-05-25 Bunick, C.G.,Nelson, M.R.,Mangahas, S.,Hunter, M.J.,Sheehan, J.H.,Mizoue, L.S.,Bunick, G.J.,Chazin, W.J. Designing Sequence to Control Protein Function in an EF-Hand Protein J.Am.Chem.Soc. 2004 126 5990 5998 1RE4 Crystal Structure of Fragment D of BbetaD398A Fibrinogen 2003-11-06 2004-05-25 Kostelansky, M.S.,Bolliger-Stucki, B.,Betts, L.,Gorkun, O.V.,Lord, S.T. BbetaGlu397 and BbetaAsp398 but not BbetaAsp432 are required for "B:b" interactions. Biochemistry 2004 43 2465 2474 1T9F Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function 2004-05-16 2004-05-25 Symersky, J.,Li, S.,Bunzel, R.,Schormann, N.,Luo, D.,Huang, W.Y.,QIU, S.,Gray, R.,ZHANG, Y.,ARABASHI, A.,Lu, S.,LUAN, C.H.,Tsao, J.,DeLucas, L.,Luo, M. Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function. To be Published 0 0 0 0 1T9F Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function 2004-05-16 2004-05-25 Symersky, J.,Li, S.,Bunzel, R.,Schormann, N.,Luo, D.,Huang, W.Y.,QIU, S.,Gray, R.,ZHANG, Y.,ARABASHI, A.,Lu, S.,LUAN, C.H.,Tsao, J.,DeLucas, L.,Luo, M. Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function. To be Published 0 0 0 0 1UXO THE CRYSTAL STRUCTURE OF THE YDEN GENE PRODUCT FROM B. SUBTILIS 2004-02-27 2004-05-27 Janda, I.,Devedjiev, Y.,Cooper, D.,Chruszcz, M.,Derewenda, U.,Gabrys, A.,Minor, W.,Joachimiak, A.,Derewenda, Z.S. Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution. Acta Crystallogr.,Sect.D 2004 60 1101 1107 1Q6X Crystal structure of rat choline acetyltransferase 2003-08-14 2004-06-01 Cai, Y.,Cronin, C.N.,Engel, A.G.,Ohno, K.,Hersh, L.B.,Rodgers, D.W. Choline acetyltransferase structure reveals distribution of mutations that cause motor disorders. Embo J. 2004 23 2047 2058 1VKJ Crystal structure of heparan sulfate 3-O-sulfotransferase isoform 1 in the presence of PAP 2004-05-25 2004-06-01 Edavettal, S.C.,Lee, K.A.,Negishi, M.,Linhardt, R.J.,Liu, J.,Pedersen, L.C. Crystal structure and mutational analysis of heparan sulfate 3-O-sulfotransferase isoform 1 J.Biol.Chem. 2004 279 25789 25797 1RID Vaccinia Complement Protein in Complex with Heparin 2003-11-17 2004-06-22 Ganesh, V.K.,Smith, S.A.,Kotwal, G.J.,Murthy, K.H.M. Structure of vaccinia complement protein in complex with heparin and potential implications for complement regulation. Proc.Natl.Acad.Sci.USA 2004 101 8924 8929 1TEV Crystal structure of the human UMP/CMP kinase in open conformation 2004-05-25 2004-06-22 Sekulic, N.,Ort, S.,Konrad, M.,Lavie, A. Substrate-induced Conformational Changes in Human UMP/CMP Kinase. J.Biol.Chem. 2004 279 33882 33889 1R4I Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element 2003-10-06 2004-06-29 Shaffer, P.L.,Jivan, A.,Dollins, D.E.,Claessens, F.,Gewirth, D.T. Structural basis of androgen receptor binding to selective androgen response elements. Proc.Natl.Acad.Sci.USA 2004 101 4758 4763 1SEN Endoplasmic reticulum protein Rp19 O95881 2004-02-17 2004-07-13 Liu, Z.-J.,Chen, L.,Tempel, W.,Shah, A.,Lee, D.,Rose, J.P.,Richardson, D.C.,Richardson, J.S.,Wang, B.-C. Endoplasmic reticulum protein Rp19 To be Published 0 0 0 0 1T3M Structure of the isoaspartyl peptidase with L-asparaginase activity from E. coli 2004-04-27 2004-07-13 Prahl, A.,Pazgier, M.,Hejazi, M.,Lockau, W.,Lubkowski, J. Structure of the isoaspartyl peptidase with L-asparaginase activity from Escherichia coli. Acta Crystallogr.,Sect.D 2004 60 1173 1176 1VKA Southeast Collaboratory for Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment 2004-05-10 2004-07-13 Liu, Z.-J.,Tempel, W.,SCHUBOT, F.D.,SHAH, A.,ROSE, J.P.,RICHARDSON, D.C.,RICHARDSON, J.S.,Wang, B.-C. Southeast Collaboratory for Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment TO BE PUBLISHED 0 0 0 0 1R7J Crystal structure of the DNA-binding protein Sso10a from Sulfolobus solfataricus 2003-10-21 2004-07-20 Chen, L.,Chen, L.R.,Zhou, X.E.,Wang, Y.,Kahsai, M.A.,Clark, A.T.,Edmondson, S.P.,Liu, Z.J.,Rose, J.P.,Wang, B.C.,Meehan, E.J.,Shriver, J.W. The hyperthermophile protein Sso10a is a dimer of winged helix DNA-binding domains linked by an antiparallel coiled coil rod. J.Mol.Biol. 2004 341 73 91 1S4B Crystal structure of human thimet oligopeptidase. 2004-01-15 2004-07-20 Ray, K.,Hines, C.S.,Coll-Rodriguez, J.,Rodgers, D.W. Crystal structure of human thimet oligopeptidase provides insight into substrate recognition, regulation, and localization J.Biol.Chem. 2004 279 20480 20489 1TZB Crystal structure of native phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum 2004-07-09 2004-07-20 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution J.Biol.Chem. 2004 279 39838 39845 1TZC Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with 5-phosphoarabinonate 2004-07-09 2004-07-20 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution J.Biol.Chem. 2004 279 39838 39845 1UUJ N-TERMINAL DOMAIN OF LISSENCEPHALY-1 PROTEIN (LIS-1) 2003-12-22 2004-07-29 Kim, M.H.,Cooper, D.R.,Oleksy, A.,Devedjiev, Y.,Derewenda, U.,Reiner, O.,Otlewski, J.,Derewenda, Z.S. The structure of the N-terminal domain of the product of the lissencephaly gene Lis1 and its functional implications. Structure 2004 12 987 998 1RYQ Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001 2003-12-22 2004-08-10 Liu, Z.J.,Lin, D.,Tempel, W.,Praissman, J.L.,Rose, J.P.,Wang, B.C. Parameter-space screening: a powerful tool for high-throughput crystal structure determination. Acta Crystallogr.,Sect.D 2005 61 520 527 1SGW Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001 2004-02-24 2004-08-10 Liu, Z.J.,Tempel, W.,Shah, A.,Chen, L.,Lee, D.,Kelley, L.-L.C.,Dillard, B.D.,Rose, J.P.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.S.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Richardson, D.C.,Richardson, J.S.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001 To be Published 0 0 0 0 1VJK Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 2004-03-10 2004-08-10 Chen, L.,Liu, Z.J.,Tempel, W.,Shah, A.,Lee, D.,Rose, J.P.,ENEH, J.C.,HOPKINS, R.C.,JENNEY JR., F.E.,LEE, H.S.,Li, T.,POOLE II, F.L.,SHAH, C.,SUGAR, F.J.,ADAMS, M.W.W.,Richardson, D.C.,Richardson, J.S.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 ' To be published 0 0 0 0 1VK1 Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001 2004-04-13 2004-08-10 Shaw, N.,Tempel, W.,Chang, J.,Yang, H.,Cheng, C.,Ng, J.,Rose, J.,Rao, Z.,Wang, B.C.,Liu, Z.J. Crystal structure solution of a ParB-like nuclease at atomic resolution. Proteins 2008 70 263 267 1RR7 Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu 2003-12-08 2004-08-17 Kumaraswami, M.,Howe, M.M.,Park, H.W. Crystal structure of the Mor protein of bacteriophage Mu, a member of the Mor/C family of transcription activators. J.Biol.Chem. 2004 279 16581 16590 1SR5 ANTITHROMBIN-ANHYDROTHROMBIN-HEPARIN TERNARY COMPLEX STRUCTURE 2004-03-22 2004-08-17 Dementiev, A.,Petitou, M.,Herbert, J.M.,Gettins, P.G. The ternary complex of antithrombin-anhydrothrombin-heparin reveals the basis of inhibitor specificity. Nat.Struct.Mol.Biol. 2004 11 863 867 1S95 Structure of serine/threonine protein phosphatase 5 2004-02-03 2004-08-24 Swingle, M.R.,Honkanen, R.E.,Ciszak, E.M. Structural basis for the catalytic activity of human serine/threonine protein phosphatase-5. J.Biol.Chem. 2004 279 33992 33999 1TBW Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation 2004-05-20 2004-08-24 Immormino, R.M.,Dollins, D.E.,Shaffer, P.L.,Soldano, K.L.,Walker, M.A.,Gewirth, D.T. Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. 2004 279 46162 46171 1TC6 Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation ADP-Complex 2004-05-20 2004-08-24 Immormino, R.M.,Dollins, D.E.,Shaffer, P.L.,Soldano, K.L.,Walker, M.A.,Gewirth, D.T. Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone. J.Biol.Chem. 2004 279 46162 46171 1TF7 Crystal Structure of Circadian Clock Protein KaiC 2004-05-26 2004-08-24 Pattanayek, R.,Wang, J.,Mori, T.,Xu, Y.,Johnson, C.H.,Egli, M. Visualizing a Circadian Clock Protein; Crystal Structure of KaiC and Functional Insights Mol.Cell 2004 15 375 388 1TTW Crystal structure of the Yersinia Pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2 2004-06-23 2004-08-31 Phan, J.,Tropea, J.E.,Waugh, D.S. Structure of the Yersinia pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2. Acta Crystallogr.,Sect.D 2004 60 1591 1599 1Q32 Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 2003-07-28 2004-09-07 He, X.,van Waardenburg, R.C.,Babaoglu, K.,Price, A.C.,Nitiss, K.C.,Nitiss, J.L.,Bjornsti, M.A.,White, S.W. Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol. 2007 372 1070 1081 1S28 Crystal Structure of AvrPphF ORF1, the Chaperone for the Type III Effector AvrPphF ORF2 from P. syringae 2004-01-08 2004-09-14 Singer, A.U.,Desveaux, D.,Betts, L.,Chang, J.H.,Nimchuk, Z.,Grant, S.R.,Dangl, J.L.,Sondek, J. Crystal Structures of the Type III Effector Protein AvrPphF and Its Chaperone Reveal Residues Required for Plant Pathogenesis Structure 2004 12 1669 1681 1TWS Dihydropteroate Synthetase From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TWW Dihydropteroate Synthetase, With Bound Substrate Analogue PtPP, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TWZ Dihydropteroate Synthetase, With Bound Substrate Analogue PtP, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TX0 Dihydropteroate Synthetase, With Bound Product Analogue Pteroic Acid, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1TX2 Dihydropteroate Synthetase, With Bound Inhibitor MANIC, From Bacillus anthracis 2004-07-01 2004-09-14 Babaoglu, K.,Qi, J.,Lee, R.E.,White, S.W. Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design. STRUCTURE 2004 12 1705 1717 1U4B Extension of an adenine-8oxoguanine mismatch 2004-07-23 2004-09-14 Hsu, G.W.,Ober, M.,Carell, T.,Beese, L.S. Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase. Nature 2004 431 217 221 1WMS High resolution crystal structure of human Rab9 GTPase: a novel antiviral drug target 2004-07-16 2004-09-14 Chen, L.,DiGiammarino, E.,Zhou, X.E.,Wang, Y.,Toh, D.,Hodge, T.W.,Meehan, E.J. High resolution crystal structure of human Rab9 GTPase: A novel antiviral drug target J.Biol.Chem. 2004 279 40204 40208 1T61 crystal structure of collagen IV NC1 domain from placenta basement membrane 2004-05-05 2004-09-21 Vanacore, R.M.,Shanmugasundararaj, S.,Friedman, D.B.,Bondar, O.,Hudson, B.G.,Sundaramoorthy, M. The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links J.Biol.Chem. 2004 279 44723 44730 1XE1 Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001 2004-09-08 2004-09-21 Chang, J.C.,Zhao, M.,Zhou, W.,Liu, Z.J.,Tempel, W.,Arendall III, W.B.,Chen, L.,Lee, D.,Habel, J.E.,Rose, J.P.,Richardson, J.S.,Richardson, D.C.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001 To be published 0 0 0 0 1SQ5 Crystal Structure of E. coli Pantothenate kinase 2004-03-17 2004-09-28 Ivey, R.A.,Zhang, Y.-M.,Virga, K.G.,Hevener, K.,Lee, R.E.,Rock, C.O.,Jackowski, S.,Park, H.-W. The structure of the pantothenate kinase.ADP.pantothenate ternary complex reveals the relationship between the binding sites for substrate, allosteric regulator, and antimetabolites. J.Biol.Chem. 2004 279 35622 35629 1TQH Covalent Reaction intermediate Revealed in Crystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est30 2004-06-17 2004-09-28 Liu, P.,Wang, Y.F.,Ewis, H.E.,Abdelal, A.T.,Lu, C.D.,Harrison, R.W.,Weber, I.T. Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30. J.Mol.Biol. 2004 342 551 561 1TQH Covalent Reaction intermediate Revealed in Crystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est30 2004-06-17 2004-09-28 Liu, P.,Wang, Y.F.,Ewis, H.E.,Abdelal, A.T.,Lu, C.D.,Harrison, R.W.,Weber, I.T. Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30. J.Mol.Biol. 2004 342 551 561 1TQI Crystal Structure of A. Fulgidus Rio2 Serine Protein Kinase 2004-06-17 2004-09-28 LaRonde-LeBlanc, N.,Wlodawer, A. Crystal Structure of A. fulgidus Rio2 Defines a New Family of Serine Protein Kinases Structure 2004 12 1585 1594 1TQM Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to AMPPNP 2004-06-17 2004-09-28 LaRonde-LeBlanc, N.,Wlodawer, A. Crystal Structure of A. fulgidus Rio2 Defines a New Family of Serine Protein Kinases Structure 2004 12 1585 1594 1XI3 Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001 2004-09-21 2004-09-28 Zhou, W.,Chen, L.,Tempel, W.,Liu, Z.-J.,Habel, J.,Lee, D.,Lin, D.,Chang, S.-H.,DILLARD, B.D.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,KELLEY, L.-L.C.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Adams, M.W.W.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001 To be published 0 0 0 0 1S99 The structure and function of B. subtilis YkoF gene product: ligand free protein 2004-02-04 2004-10-05 Devedjiev, Y.,Surendranath, Y.,Derewenda, U.,Gabrys, A.,Cooper, D.R.,Zhang, R.G.,Lezondra, L.,Joachimiak, A.,Derewenda, Z.S. The Structure and Ligand Binding Properties of the B.subtilis YkoF Gene Product, a Member of a Novel Family of Thiamin/HMP-binding Proteins J.Mol.Biol. 2004 343 395 406 1TJG Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 7mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the Anti-Human Immunodeficiency Virus Type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1TJH Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the anti-human immunodeficiency virus type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1TJI Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope 2004-06-04 2004-10-05 Ofek, G.,Tang, M.,Sambor, A.,Katinger, H.,Mascola, J.R.,Wyatt, R.,Kwong, P.D. Structure and mechanistic analysis of the Anti-Human Immunodeficiency Virus type 1 antibody 2F5 in complex with its gp41 epitope J.Virol. 2004 78 10724 10737 1XK8 Divalent cation tolerant protein CUTA from Homo sapiens O60888 2004-09-27 2004-10-19 Tempel, W.,Chen, L.,Liu, Z.-J.,Lee, D.,Shah, A.,Dailey, T.A.,Mayer, M.R.,Arendall III, W.B.,Rose, J.P.,Dailey, H.A.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C. Divalent cation tolerant protein CUTA from Homo sapiens O60888 To be published 0 0 0 0 1XQG 3.10 A crystal structure of maspin, Space group P 4 21 2 2004-10-12 2004-10-26 Al-Ayyoubi, M.,Gettins, P.G.,Volz, K. Crystal Structure of Human Maspin, a Serpin with Antitumor Properties: Reactive Center Loop of Mapsin is Exposed but Constrained J.Biol.Chem. 2004 279 55540 55544 1XQJ 3.10 A Crystal structure of maspin, space group I 4 2 2 2004-10-12 2004-10-26 Al-Ayyoubi, M.,Gettins, P.G.,Volz, K. Crystal Structure of Human Maspin, a Serpin with Antitumor Properties: Reactive Center Loop of Mapsin is Exposed but Constrained J.Biol.Chem. 2004 279 55540 55544 1TNO Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a KKKSKTKCVIM Peptide Derived from K-Ras4B 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1TNU Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a GCINCCKVL Peptide Derived from RhoB 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1TNY Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a FREKKFFCAIL Peptide Derived from the Heterotrimeric G Protein Gamma-2 Subunit 2004-06-11 2004-11-02 Reid, T.S.,Terry, K.L.,Casey, P.J.,Beese, L.S. Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity. J.Mol.Biol. 2004 343 417 433 1U0F Crystal structure of mouse phosphoglucose isomerase in complex with glucose 6-phosphate 2004-07-13 2004-11-02 Graham Solomons, J.T.,Zimmerly, E.M.,Burns, S.,Krishnamurthy, N.,Swan, M.K.,Krings, S.,Muirhead, H.,Chirgwin, J.,Davies, C. The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening. J.Mol.Biol. 2004 342 847 860 1XPL Crystal Structure of Staphylococcus aureus HMG-COA Synthase with Acetoacetyl-COA and Acetylated Cysteine 2004-10-08 2004-11-02 Theisen, M.J.,Misra, I.,Saadat, D.,Campobasso, N.,Miziorko, H.M.,Harrison, D.H.T. 3-hydroxy-3-methylglutaryl-CoA synthase intermediate complex observed in "real-time" Proc.Natl.Acad.Sci.USA 2004 47 16442 16447 1T0F Crystal Structure of the TnsA/TnsC(504-555) complex 2004-04-08 2004-11-09 Ronning, D.R.,Li, Y.,Perez, Z.N.,Ross, P.D.,Hickman, A.B.,Craig, N.L.,Dyda, F. The carboxy-terminal portion of TnsC activates the Tn7 transposase through a specific interaction with TnsA Embo J. 2004 23 2972 2981 1TWL Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001 2004-07-01 2004-11-23 Zhou, W.,Tempel, W.,Liu, Z.-J.,Chen, L.,Clancy Kelley, L.-L.,Dillard, B.D.,Hopkins, R.C.,Arendall III, W.B.,Rose, J.P.,ENEH, J.C.,JENNEY JR., F.E.,LEE, H.S.,LI, T.,POOLE II, F.L.,SHAH, C.,SUGAR, F.J.,ADAMS, M.W.W.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001 To be published 0 0 0 0 1X8V Estriol-bound and ligand-free structures of sterol 14alpha-demethylase (CYP51) 2004-08-18 2004-11-23 Podust, L.M.,Yermalitskaya, L.V.,Lepesheva, G.I.,Podust, V.N.,Dalmasso, E.A.,Waterman, M.R. Estriol Bound and Ligand-free Structures of Sterol 14alpha-Demethylase. Structure 2004 12 1937 1945 1XG7 Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus 2004-09-16 2004-11-23 Chang, J.,Zhao, M.,Horanyi, P.,Xu, H.,Yang, H.,Liu, Z.-J.,Chen, L.,Zhou, W.,Habel, J.,Tempel, W.,Lee, D.,Lin, D.,Chang, S.-H.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,CHEN, C.-Y.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,ADAMS, M.W.W.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus To be published 0 0 0 0 1UPS GLCNAC[ALPHA]1-4GAL RELEASING ENDO-[BETA]-GALACTOSIDASE FROM CLOSTRIDIUM PERFRINGENS 2003-10-10 2004-11-25 Tempel, W.,Liu, Z.J.,Horanyi, P.S.,Deng, L.,Lee, D.,Newton, M.G.,Rose, J.P.,Ashida, H.,Li, S.C.,Li, Y.T.,Wang, B.C. Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens. Proteins 2005 59 141 144 1XI6 Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001 2004-09-21 2004-11-30 Zhao, M.,Chang, J.C.,Zhou, W.,Chen, L.,Horanyi, P.,Xu, H.,Yang, H.,Liu, Z.-J.,Habel, J.E.,Lee, D.,Chang, S.-H.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001 To be published 0 0 0 0 1X9H Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with fructose 6-phosphate 2004-08-21 2004-12-07 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. Structural basis for phosphomannose isomerase activity in phosphoglucose isomerase from Pyrobaculum aerophilum: a subtle difference between distantly related enzymes. Biochemistry 2004 43 14088 14095 1X9I Crystal structure of Crystal structure of phosphoglucose/phosphomannose phosphoglucose/phosphomannoseisomerase from Pyrobaculum aerophilum in complex with glucose 6-phosphate 2004-08-21 2004-12-07 Swan, M.K.,Hansen, T.,Schoenheit, P.,Davies, C. Structural basis for phosphomannose isomerase activity in phosphoglucose isomerase from Pyrobaculum aerophilum: a subtle difference between distantly related enzymes. Biochemistry 2004 43 14088 14095 1XO5 Crystal structure of CIB1, an EF-hand, integrin and kinase-binding protein 2004-10-05 2004-12-07 Gentry, H.R.,Singer, A.U.,Betts, L.,Yang, C.,Ferrara, J.D.,Sondek, J.,Parise, L.V. Structural and Biochemical Characterization of CIB1 Delineates a New Family of EF-hand-containing Proteins J.Biol.Chem. 2005 280 8407 8415 1XQU HIT family hydrolase from Clostridium thermocellum Cth-393 2004-10-13 2004-12-14 Zhao, M.,Chang, J.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Tempel, W.,Lin, D.,Zhang, H.,Arendall III, W.B.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics HIT family hydrolase from Clostridium thermocellum Cth-393 To be published 0 0 0 0 1XRG Conserved hypothetical protein from Clostridium thermocellum Cth-2968 2004-10-14 2004-12-14 Zhao, M.,Chang, J.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Tempel, W.,Lin, D.,Zhang, H.,Arendall III, W.B.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Richardson, J.S.,Richardson, D.C.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein from Clostridium thermocellum Cth-2968 To be published 0 0 0 0 1Y6J L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135 2004-12-06 2004-12-14 Chen, L.,Yang, H.,Kataeva, I.,Chen, L.R.,Tempel, W.,Lee, D.,Habel, J.,Zhou, W.,Lin, D.,Ljungdahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135 To be Published 0 0 0 0 1SL7 Crystal structure of calcium-loaded apo-obelin from Obelia longissima 2004-03-05 2004-12-28 Deng, L.,Vysotski, E.S.,Markova, S.V.,Liu, Z.J.,Lee, J.,Rose, J.,Wang, B.C. All three Ca2+-binding loops of photoproteins bind calcium ions: The crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci. 2005 14 663 675 1SL8 Calcium-loaded apo-aequorin from Aequorea victoria 2004-03-05 2004-12-28 Deng, L.,Vysotski, E.S.,Markova, S.V.,Liu, Z.J.,Lee, J.,Rose, J.,Wang, B.C. All three Ca2+-binding loops of photoproteins bind calcium ions: The crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci. 2005 14 663 675 1XX7 Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001 2004-11-04 2004-12-28 Chen, L.,Tempel, W.,Habel, J.,Zhou, W.,Nguyen, D.,Chang, S.-H.,Lee, D.,Kelley, L.-L.C.,Dillard, B.D.,Liu, Z.-J.,Bridger, S.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr, F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001 To be published 0 0 0 0 1S1F Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-01-06 2005-01-11 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2 J.Biol.Chem. 2005 280 11599 11607 1S1F Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-01-06 2005-01-11 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2 J.Biol.Chem. 2005 280 11599 11607 1YEM Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus 2004-12-28 2005-01-11 Yang, H.,Chang, J.,Shah, A.,Ng, J.D.,Liu, Z.-J.,Chen, L.,Lee, D.,Tempel, W.,Praissman, J.L.,Lin, D.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Jenney Jr., F.E.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus To be published 0 0 0 0 1XSN Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP 2004-10-19 2005-01-18 Garcia-Diaz, M.,Bebenek, K.,Krahn, J.M.,Kunkel, T.A.,Pedersen, L.C. A closed conformation for the Pol lambda catalytic cycle. Nat.Struct.Mol.Biol. 2005 12 97 98 1SE6 Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways 2004-02-16 2005-01-25 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2. J.Biol.Chem. 2005 280 11599 11607 1T93 Evidence for Multiple Substrate Recognition and Molecular Mechanism of C-C reaction by Cytochrome P450 CYP158A2 from Streptomyces Coelicolor A3(2) 2004-05-14 2005-01-25 Zhao, B.,Guengerich, F.P.,Bellamine, A.,Lamb, D.C.,Izumikawa, M.,Lei, L.,Podust, L.M.,Sundaramoorthy, M.,Kalaitzis, J.A.,Reddy, L.M.,Kelly, S.L.,Moore, B.S.,Stec, D.,Voehler, M.,Falck, J.R.,Shimada, T.,Waterman, M.R. Binding of Two Flaviolin Substrate Molecules, Oxidative Coupling, and Crystal Structure of Streptomyces coelicolor A3(2) Cytochrome P450 158A2. J.Biol.Chem. 2005 280 11599 11607 1Y80 Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica 2004-12-10 2005-01-25 Liu, Z.-J.,Fu, Z.-Q.,Tempel, W.,Das, A.,Habel, J.,Zhou, W.,Chang, J.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Ljungdahl, L.,Rose, J.P.,Wang, B.-C. Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica To be published 0 0 0 0 1Y81 Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus 2004-12-10 2005-01-25 Zhao, M.,Chang, J.,Habel, J.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus To be published 0 0 0 0 1Y82 Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus 2004-12-10 2005-01-25 Horanyi, P.,Tempel, W.,Habel, J.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics (SECSG) Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus To be published 0 0 0 0 1YIS Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase 2005-01-12 2005-01-25 Symersky, J.,Schormann, N.,Lu, S.,Zhang, Y.,Karpova, E.,Qiu, S.,Huang, W.,Cao, Z.,Zhou, J.,Luo, M.,Arabshahi, A.,McKinstry, A.,Luan, C.-H.,Luo, D.,Johnson, D.,An, J.,Tsao, J.,Delucas, L.,Shang, Q.,Gray, R.,Li, S.,Bray, T.,Chen, Y.-J. Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase To be Published 0 0 0 0 1YB3 Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus 2004-12-19 2005-02-01 Habel, J.,Zhou, W.,Chang, J.,Zhao, M.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus To be published 0 0 0 0 1YBX Conserved hypothetical protein Cth-383 from Clostridium thermocellum 2004-12-21 2005-02-01 Tempel, W.,Chang, J.,Zhao, M.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. Conserved hypothetical protein Cth-383 from Clostridium thermocellum To be published 0 0 0 0 1YBY Conserved hypothetical protein Cth-95 from Clostridium thermocellum 2004-12-21 2005-02-01 Zhao, M.,Zhou, W.,Chang, J.,Habel, J.,Kataeva, I.,Xu, H.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Tempel, W.,Lin, D.,Zhang, H.,Ljundahl, L.,Liu, Z.-J.,Rose, J.,Wang, B.-C. Conserved hypothetical protein Cth-95 from Clostridium thermocellum To be published 0 0 0 0 1YBZ Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001 2004-12-21 2005-02-01 Lee, D.,Chen, L.,Nguyen, D.,Dillard, B.D.,Tempel, W.,Habel, J.,Zhou, W.,Chang, S.-H.,Kelley, L.-L.C.,Liu, Z.-J.,Lin, D.,Zhang, H.,Praissman, J.,Bridger, S.,Eneh, J.C.,Hopkins, R.C.,Jenney Jr., F.E.,Lee, H.-S.,Li, T.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001 To be published 0 0 0 0 1TXF CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE IN COMPLEX WITH GLUTAMATE AT 2.1 ANGSTROM RESOLUTION 2004-07-04 2005-02-08 Mayer, M.L. Crystal structures of the GluR5 and GluR6 ligand binding cores: Molecular mechanisms underlying kainate receptor selectivity Neuron 2005 45 539 552 1YD7 Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus 2004-12-23 2005-02-08 Horanyi, P.,Florence, Q.,Zhou, W.,Chang, J.,Zhao, M.,Habel, J.,Xu, H.,Chen, L.,Lee, D.,Nguyen, D.,Chang, S.-H.,Tempel, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Liu, Z.-J.,Rose, J.P.,Wang, B.-C.,Southeast Collaboratory for Structural Genomics (SECSG) Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus To be published 0 0 0 0 1YPQ Human Oxidized Low Density Lipoprotein Receptor LOX-1 Dioxane Complex 2005-01-31 2005-02-08 Park, H.,Adsit, F.G.,Boyington, J.C. The 1.4 angstrom crystal structure of the human oxidized low density lipoprotein receptor lox-1. J.Biol.Chem. 2005 280 13593 13599 1YO6 Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans 2005-01-26 2005-02-15 Schormann, N.,Lu, S.,Symersky, J.,Karpova, E.,Zhang, Y.,Luo, D.,Zhou, Q.,Huang, W.,Luan, C.-H.,Gray, R.,Arabshahi, A.,McKinstry, A.,Qiu, S.,Cao, Z.,An, J.,Li, S.,Lin, G.,Tsao, J.,Johnson, D.,Luo, M.,Shang, Q.,Chen, Y.,Stinnett, M.,Bunzel, R.,Carson, M.,Bray, T.,DeLucas, L. Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans To be Published 0 0 0 0 1YQ1 Structural Genomics Of Caenorhabditis Elegans: glutathione S-Transferase 2005-01-31 2005-02-15 Lu, S.,Schorman, N.,Zhang, Y.,Symersky, J.,An, J.,Arabshahi, A.,Bunzel, R.,Cao, Z.,Carson, M.,Chen, Y.,Delucas, L.,Gray, R.,Huang, W.,Johnson, D.,Karpova, E.,Li, S.,Lin, G.,Luo, D.,Mckinstry, A.,Qiu, S.,Shang, Q.,Stinnett, M.,Tsao, J.,Zhou, Q.,Luan, Q.-H.,Luo, M. Structural Genomics of Caenorhabditis Elegans: glutathione S-Transferase To be Published 0 0 0 0 1X9D Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue 2004-08-20 2005-02-22 Karaveg, K.,Siriwardena, A.,Tempel, W.,Liu, Z.J.,Glushka, J.,Wang, B.C.,Moremen, K.W. Mechanism of class 1 (glycosylhydrolase family 47) {alpha}-mannosidases involved in N-glycan processing and endoplasmic reticulum quality control. J.Biol.Chem. 2005 280 16197 16207 1YCY Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus 2004-12-23 2005-02-22 Huang, L.,Liu, Z.-J.,Lee, D.,Tempel, W.,Chang, J.,Zhao, M.,Habel, J.,Xu, H.,Chen, L.,Nguyen, D.,Chang, S.-H.,Horanyi, P.,Florence, Q.,Zhou, W.,Lin, D.,Zhang, H.,Praissman, J.,Jenney Jr., F.E.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus To be published 0 0 0 0 1YPY Crystal Structure of Vaccinia Virus L1 protein 2005-01-31 2005-03-01 Su, H.P.,Garman, S.C.,Allison, T.J.,Fogg, C.,Moss, B.,Garboczi, D.N. The 1.51-Angstrom structure of the poxvirus L1 protein, a target of potent neutralizing antibodies. Proc.Natl.Acad.Sci.Usa 2005 102 4240 4245 1SKX Structural Disorder in the Complex of Human PXR and the Macrolide Antibiotic Rifampicin 2004-03-05 2005-03-08 Chrencik, J.E.,Orans, J.O.,Moore, L.B.,Xue, Y.,Peng, L.,Collins, J.L.,Wisely, G.B.,Lambert, M.H.,Kliewer, S.A.,Redinbo, M.R. Structural disorder in the complex of human pregnane x receptor and the macrolide antibiotic rifampicin Mol.Endocrinol. 2005 19 1125 1134 1XL3 Complex structure of Y.pestis virulence Factors YopN and TyeA 2004-09-30 2005-03-22 Schubot, F.D.,Jackson, M.W.,Penrose, K.J.,Cherry, S.,Tropea, J.E.,Plano, G.V.,Waugh, D.S. Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis. J.Mol.Biol. 2005 346 1147 1161 1XTB Crystal Structure of Rabbit Phosphoglucose Isomerase Complexed with Sorbitol-6-Phosphate 2004-10-21 2005-03-22 Lee, J.H.,Jeffery, C.J. The crystal structure of rabbit phosphoglucose isomerase complexed with D-sorbitol-6-phosphate, an analog of the open chain form of D-glucose-6-phosphate. Protein Sci. 2005 14 727 734 1YG9 The structure of mutant (N93Q) of bla g 2 2005-01-04 2005-03-22 Gustchina, A.,Li, M.,Wuenschmann, S.,Chapman, M.D.,Pomes, A.,Wlodawer, A. Crystal structure of cockroach allergen Bla g 2, an unusual zinc binding aspartic protease with a novel mode of self-inhibition. J.Mol.Biol. 2005 348 433 444 1Z2U The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance 2005-03-09 2005-03-22 Gavira, J.A.,DiGiamamarino, E.,Tempel, W.,Liu, Z.J.,Wang, B.C.,Meehan, E.,Ng, J.D. The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance To be published 0 0 0 0 1Z3D Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans 2005-03-11 2005-03-22 Gavira, J.A.,DiGiammarino, E.,Tempel, W.,Toh, D.,Liu, Z.J.,Wang, B.C.,Meehan, E.,Ng, J.D. Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans To be Published 0 0 0 0 1XEM High Resolution Crystal Structure of Escherichia coli Zinc- Peptide Deformylase bound to formate 2004-09-10 2005-03-29 Jain, R.,Hao, B.,Liu, R.-P.,Chan, M.K. Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal J.Am.Chem.Soc. 2005 127 4558 4559 1W9G STRUCTURE OF ERH (ENHENCER OF RUDIMENTARY GENE) 2004-10-13 2005-04-06 Wan, C.,Tempel, W.,Liu, Z.J.,Wang, B.C.,Rose, R.B. Structure of the conserved transcriptional repressor enhancer of rudimentary homolog. Biochemistry 2005 44 5017 5023 1YM9 Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form 2005-01-20 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YMD Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form 2005-01-20 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YMK Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form 2005-01-21 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YML Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form 2005-01-21 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1YS0 Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the disulfide form 2005-02-05 2005-04-12 Buhrman, G.K.,Parker, B.,Sohn, J.,Rudolph, J.,Mattos, C. Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond Biochemistry 2005 44 5307 5316 1Z8K X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770 2005-03-30 2005-04-12 Center for Eukaryotic Structural Genomics (CESG) X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770 To be published 0 0 0 0 1Z90 X-ray structure of gene product from arabidopsis thaliana at3g03250, a putative UDP-glucose pyrophosphorylase 2005-03-31 2005-04-12 McCoy, J.G.,Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,Bannen, R.M.,Kondrashov, D.A.,Phillips Jr., G.N. Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP. J.Mol.Biol. 2007 366 830 841 1U9I Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites 2004-08-09 2005-04-19 Xu, Y.,Mori, T.,Pattanayek, R.,Pattanayek, S.,Egli, M.,Johnson, C.H. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses PROC.NATL.ACAD.SCI.USA 2004 101 13933 13938 1WY3 Chicken villin subdomain HP-35, K65(NLE), N68H, pH7.0 2005-02-04 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1XAO Hsp40-Ydj1 dimerization domain 2004-08-26 2005-05-03 Wu, Y.,Li, J.,Jin, Z.,Fu, Z.,Sha, B. The crystal structure of the C-terminal fragment of yeast Hsp40 Ydj1 reveals novel dimerization motif for Hsp40 J.Mol.Biol. 2005 346 1005 1011 1YRF Chicken villin subdomain HP-35, N68H, pH6.7 2005-02-03 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1YRI Chicken villin subdomain HP-35, N68H, pH6.4 2005-02-03 2005-05-03 Chiu, T.K.,Kubelka, J.,Herbst-Irmer, R.,Eaton, W.A.,Hofrichter, J.,Davies, D.R. High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc.Natl.Acad.Sci.Usa 2005 102 7517 7522 1YYL crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b 2005-02-25 2005-05-03 Huang, C.C.,Stricher, F.,Martin, L.,Decker, J.M.,Majeed, S.,Barthe, P.,Hendrickson, W.A.,Robinson, J.,Roumestand, C.,Sodroski, J.,Wyatt, R.,Shaw, G.M.,Vita, C.,Kwong, P.D. Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth. Structure 2005 13 755 768 1YYM crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b 2005-02-25 2005-05-03 Huang, C.C.,Stricher, F.,Martin, L.,Decker, J.M.,Majeed, S.,Barthe, P.,Hendrickson, W.A.,Robinson, J.,Roumestand, C.,Sodroski, J.,Wyatt, R.,Shaw, G.M.,Vita, C.,Kwong, P.D. Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth. Structure 2005 13 755 768 1ZGH Methionyl-tRNA formyltransferase from Clostridium thermocellum 2005-04-21 2005-05-03 Yang, H.,Kataeva, I.,Xu, H.,Zhao, M.,Chang, J.,Liu, Z.,Chen, L.,Tempel, W.,Habel, J.,Zhou, W.,Lee, D.,Lin, D.,Chang, S.,Arendall III, W.B.,Richardson, J.S.,Richardson, D.C.,Rose, J.P.,Wang, B.,Southeast Collaboratory for Structural Genomics Methionyl-tRNA formyltransferase from Clostridium thermocellum To be published 0 0 0 0 1YW2 Mutated Mus Musculus P38 Kinase (mP38) 2005-02-16 2005-05-10 Laughlin, S.K.,Clark, M.P.,Djung, J.F.,Golebiowski, A.,Brugel, T.A.,Sabat, M.,Bookland, R.G.,Laufersweiler, M.J.,Vanrens, J.C.,Townes, J.A.,De, B.,Hsieh, L.C.,Xu, S.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of new isoxazolone based inhibitors of tumor necrosis factor-alpha (TNF-alpha) production. Bioorg.Med.Chem.Lett. 2005 15 2399 2403 1YWR Crystal Structure Analysis of inactive P38 kinase domain in complex with a Monocyclic Pyrazolone Inhibitor 2005-02-18 2005-05-10 Golebiowski, A.,Townes, J.A.,Laufersweiler, M.J.,Brugel, T.A.,Clark, M.P.,Clark, C.M.,Djung, J.F.,Laughlin, S.K.,Sabat, M.P.,Bookland, R.G.,Vanrens, J.C.,De, B.,Hsieh, L.C.,Janusz, M.J.,Walter, R.L.,Webster, M.E.,Mekel, M.J. The development of monocyclic pyrazolone based cytokine synthesis inhibitors. Bioorg.Med.Chem.Lett. 2005 15 2285 2289 1YFJ T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact 2005-01-02 2005-05-17 Horton, J.R.,Liebert, K.,Hattman, S.,Jeltsch, A.,Cheng, X. Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell (Cambridge,Mass.) 2005 121 349 361 1YFL T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base 2005-01-03 2005-05-17 Horton, J.R.,Liebert, K.,Hattman, S.,Jeltsch, A.,Cheng, X. Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell (Cambridge,Mass.) 2005 121 349 361 1ZD0 Crystal structure of Pfu-542154 conserved hypothetical protein 2005-04-13 2005-05-17 Habel, J.E.,Liu, Z.J.,Horanyi, P.S.,Florence, Q.J.T.,Tempel, W.,Zhou, W.,Chen, L.,Lee, D.,Nguyen, J.,Chang, S.H.,Bereton, P.,Izumi, M.,Jenny Jr., F.E.,Poole II, F.L.,Shah, C.,Sugar, F.J.,Adams, M.W.W.,Rose, J.P.,Wang, B.C. Crystal structure of Pfu-542154 conserved hypothetical protein To be Published 0 0 0 0 2BF2 CRYSTAL STRUCTURE OF NATIVE TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN, T4MOD 2004-12-02 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal structures and functional studies of T4moD, the toluene 4-monooxygenase catalytic effector protein. Biochemistry 2005 44 7131 7142 2BF3 CRYSTAL STRUCTURE OF A TOLUENE 4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN VARIANT MISSING TEN N-TERMINAL RESIDUES (DELTA-N10 T4MOD) 2004-12-02 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal structures and functional studies of T4moD, the toluene 4-monooxygenase catalytic effector protein. Biochemistry 2005 44 7131 7142 2BF5 CRYSTAL STRUCTURE OF A TOLUENE 4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN VARIANT MISSING FOUR N-TERMINAL RESIDUES (DELTA-N4 T4MOD) 2004-12-02 2005-05-19 Lountos, G.T.,Mitchell, K.H.,Studts, J.M.,Fox, B.G.,Orville, A.M. Crystal structures and functional studies of T4moD, the toluene 4-monooxygenase catalytic effector protein. Biochemistry 2005 44 7131 7142 1ZNQ Crsytal Structure of Human Liver GAPDH 2005-05-11 2005-05-24 Ismail, S.A.,Park, H.W. Crystal Structure Analysis of Human liver GAPDH To be Published 0 0 0 0 1ZTD Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus 2005-05-26 2005-06-07 Fu, Z.-Q.,Horanyi, P.,Florence, Q.,Liu, Z.-J.,Chen, L.,Lee, D.,Habel, J.,Xu, H.,Nguyen, D.,Chang, S.-H.,Zhou, W.,Zhang, H.,Jenney Jr., F.E.,Sha, B.,Adams, M.W.W.,Rose, J.P.,Wang, B.-C. Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus To be Published 0 0 0 0 1V1T CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN IN COMPLEX WITH TNEYKV PEPTIDE 2004-04-23 2005-06-14 Grembecka, J.,Cierpicki, T.,Devedjiev, Y.,Derewenda, U.,Kang, B.S.,Bushweller, J.H.,Derewenda, Z.S. The binding of the PDZ tandem of syntenin to target proteins. Biochemistry 2006 45 3674 3683 1ZFN Structural Analysis of Escherichia coli ThiF 2005-04-20 2005-06-14 Duda, D.M.,Walden, H.,Sfondouris, J.,Schulman, B.A. Structural Analysis of Escherichia Coli ThiF. J.Mol.Biol. 2005 349 774 786 1Z6F Crystal structure of penicillin-binding protein 5 from E. coli in complex with a boronic acid inhibitor 2005-03-22 2005-06-21 Nicola, G.,Peddi, S.,Stefanova, M.,Nicholas, R.A.,Gutheil, W.G.,Davies, C. Crystal Structure of Escherichia coli Penicillin-Binding Protein 5 Bound to a Tripeptide Boronic Acid Inhibitor: A Role for Ser-110 in Deacylation. Biochemistry 2005 44 8207 8217 1Z7X X-ray structure of human ribonuclease inhibitor complexed with ribonuclease I 2005-03-28 2005-06-21 Johnson, R.J.,McCoy, J.G.,Bingman, C.A.,Phillips Jr., G.N.,Raines, R.T. Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. J.Mol.Biol. 2007 368 434 449 1ZAO Crystal Structure of A.fulgidus Rio2 Kinase Complexed With ATP and Manganese Ions 2005-04-06 2005-06-21 Laronde-Leblanc, N.,Guszczynski, T.,Copeland, T.,Wlodawer, A. Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. Febs J. 2005 272 2800 2810 1ZAR Crystal Structure of A.fulgidus Rio2 Kinase Complexed With ADP and Manganese Ions 2005-04-06 2005-06-21 Laronde-Leblanc, N.,Guszczynski, T.,Copeland, T.,Wlodawer, A. Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. Febs J. 2005 272 2800 2810 1ZP8 HIV Protease with inhibitor AB-2 2005-05-16 2005-06-21 Brik, A.,Alexandratos, J.,Lin, Y.C.,Elder, J.H.,Olson, A.J.,Wlodawer, A.,Goodsell, D.S.,Wong, C.H. 1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors. Chembiochem 2005 6 1167 1169 2BQ3 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE 2005-04-26 2005-06-22 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine. J.Biol.Chem. 2005 280 29750 29764 2BQR DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE 2005-04-27 2005-06-23 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine. J.Biol.Chem. 2005 280 29750 29764 2BQU DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE 2005-04-27 2005-06-23 Zang, H.,Goodenough, A.K.,Choi, J.Y.,Irimia, A.,Loukachevitch, L.V.,Kozekov, I.D.,Angel, K.C.,Rizzo, C.J.,Egli, M.,Guengerich, F.P. DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine. J.Biol.Chem. 2005 280 29750 29764 1U0Z N-Domain Of Grp94 Lacking The Charged Domain In Complex With Radicicol 2004-07-14 2005-07-05 Gewirth, D.T.,Immormino, R.M. N-Domain Of Grp94 Lacking The Charged Domain In Complex With Radicicol TO BE PUBLISHED 0 0 0 0 1WWI Crystal structure of ttk003001566 from Thermus Thermophilus HB8 2005-01-05 2005-07-05 Wang, H.,Murayama, K.,Terada, T.,Chen, L.,Liu, Z.J.,Wang, B.C.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ttk003001566 from Thermus Thermophilus HB8 TO BE PUBLISHED 0 0 0 0 1T5A Human Pyruvate Kinase M2 2004-05-03 2005-07-12 Dombrauckas, J.D.,Santarsiero, B.D.,Mesecar, A.D. Structural basis for tumor pyruvate kinase M2 allosteric regulation and catalysis. Biochemistry 2005 44 9417 9429 1Y3A Structure of G-Alpha-I1 bound to a GDP-selective peptide provides insight into guanine nucleotide exchange 2004-11-24 2005-07-12 Johnston, C.A.,Willard, F.S.,Jezyk, M.R.,Fredericks, Z.,Bodor, E.T.,Jones, M.B.,Blaesius, R.,Watts, V.J.,Harden, T.K.,Sondek, J.,Ramer, J.K.,Siderovski, D.P. Structure of G-Alpha-I1 bound to a GDP-selective peptide provides insight into guanine nucleotide exchange Structure 2005 7 1069 1080 1YKB Crystal Structure of Insect Cell Expressed IL-22 2005-01-17 2005-07-12 Xu, T.,Logsdon, N.J.,Walter, M.R. Structure of insect-cell-derived IL-22. 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Single type I collagen molecule 2004-11-15 2006-05-16 Orgel, J.P.,Irving, T.C.,Miller, A.,Wess, T.J. Microfibrillar structure of type I collagen in situ. Proc.Natl.Acad.Sci.Usa 2006 103 9001 9005 1ZLM Crystal structure of the SH3 domain of human osteoclast stimulating factor 2005-05-06 2006-05-16 Chen, L.,Wang, Y.,Wells, D.,Toh, D.,Harold, H.,Zhou, J.,DiGiammarino, E.,Meehan, E.J. Structure of the SH3 domain of human osteoclast-stimulating factor at atomic resolution. Acta Crystallogr.,Sect.F 2006 62 844 848 2FUL Crystal Structure of the C-terminal Domain of S. cerevisiae eIF5 2006-01-27 2006-05-23 Wei, Z.,Xue, Y.,Xu, H.,Gong, W. Crystal Structure of the C-terminal Domain of S.cerevisiae eIF5 J.Mol.Biol. 2006 359 1 9 2G02 Nisin cyclase 2006-02-10 2006-05-23 Li, B.,Yu, J.P.J.,Brunzelle, J.S.,Moll, G.N.,Van der Donk, W.A.,Nair, S.K. Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis Science 2006 311 1464 1467 2G02 Nisin cyclase 2006-02-10 2006-05-23 Li, B.,Yu, J.P.J.,Brunzelle, J.S.,Moll, G.N.,Van der Donk, W.A.,Nair, S.K. Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis Science 2006 311 1464 1467 2GTM Mutated Mouse P38 MAP Kinase Domain in complex with Inhibitor PG-892579 2006-04-28 2006-05-23 Sabat, M.,Vanrens, J.C.,Clark, M.P.,Brugel, T.A.,Maier, J.,Bookland, R.G.,Laufersweiler, M.J.,Laughlin, S.K.,Golebiowski, A.,De, B.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of novel C-2, C-8, and N-9 trisubstituted purines as inhibitors of TNF-alpha production. Bioorg.Med.Chem.Lett. 2006 16 4360 4365 2FAU Crystal structure of human vps26 2005-12-08 2006-05-30 Shi, H.,Rojas, R.,Bonifacino, J.S.,Hurley, J.H. The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Nat.Struct.Mol.Biol. 2006 13 540 548 2GSK Structure of the BtuB:TonB Complex 2006-04-26 2006-06-13 Shultis, D.D.,Purdy, M.D.,Banchs, C.N.,Wiener, M.C. Outer membrane active transport: structure of the BtuB:TonB complex Science 2006 312 1396 1399 2H02 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-05-13 2006-06-13 Amarasinghe, K.K.,Evdokimov, A.G.,Xu, K.,Clark, C.M.,Maier, M.B.,Srivastava, A.,Colson, A.O.,Gerwe, G.S.,Stake, G.E.,Howard, B.W.,Pokross, M.E.,Gray, J.L.,Peters, K.G. Design and synthesis of potent, non-peptidic inhibitors of HPTPbeta. Bioorg.Med.Chem.Lett. 2006 16 4252 4256 2H03 Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-05-13 2006-06-13 Amarasinghe, K.K.,Evdokimov, A.G.,Xu, K.,Clark, C.M.,Maier, M.B.,Srivastava, A.,Colson, A.O.,Gerwe, G.S.,Stake, G.E.,Howard, B.W.,Pokross, M.E.,Gray, J.L.,Peters, K.G. 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Crystal structure of HIF prolyl hydroxylase in complex with a biologically active inhibitor To be Published 0 0 0 0 2HBU Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor 2006-06-14 2006-06-27 Evdokimov, A.G.,Walter, R.L.,Mekel, M.,Pokross, M.E.,Kawamoto, R.,Boyer, A. Crystal structure of HIF prolyl hydroxylase in complex with a biologically active inhibitor To be Published 0 0 0 0 2HC1 Engineered catalytic domain of protein tyrosine phosphatase HPTPbeta. 2006-06-14 2006-06-27 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2HC2 Engineered protein tyrosine phosphatase beta catalytic domain 2006-06-15 2006-06-27 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2BVJ LIGAND-FREE STRUCTURE OF CYTOCHROME P450 PIKC (CYP107L1) 2005-06-23 2006-07-03 Sherman, D.H.,Li, S.,Yermalitskaya, L.V.,Kim, Y.,Smith, J.A.,Waterman, M.R.,Podust, L.M. The structural basis for substrate anchoring, active site selectivity, and product formation by P450 PikC from Streptomyces venezuelae. J.Biol.Chem. 2006 281 26289 26297 2C6H CRYSTAL STRUCTURE OF YC-17-BOUND CYTOCHROME P450 PIKC (CYP107L1) 2005-11-09 2006-07-03 Sherman, D.H.,Li, S.,Yermalitskaya, L.V.,Kim, Y.,Smith, J.A.,Waterman, M.R.,Podust, L.M. The structural basis for substrate anchoring, active site selectivity, and product formation by P450 PikC from Streptomyces venezuelae. J.Biol.Chem. 2006 281 26289 26297 2GTN Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-951717 2006-04-28 2006-07-11 Sabat, M.,Vanrens, J.C.,Clark, M.P.,Brugel, T.A.,Maier, J.,Bookland, R.G.,Laufersweiler, M.J.,Laughlin, S.K.,Golebiowski, A.,De, B.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Janusz, M.J. The development of novel C-2, C-8, and N-9 trisubstituted purines as inhibitors of TNF-alpha production. Bioorg.Med.Chem.Lett. 2006 16 4360 4365 1ZYU Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate and amppcp at 2.85 angstrom resolution 2005-06-11 2006-07-11 Gan, J.H.,Gu, Y.J.,Li, Y.,Yan, H.G.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue Biochemistry 2006 45 8539 8545 2BPO CRYSTAL STRUCTURE OF THE YEAST CPR TRIPLE MUTANT: D74G, Y75F, K78A. 2005-04-20 2006-07-13 Yermalitskaya, L.V.,Kim, Y.,Waterman, M.R.,Podust, L.M. Crystal Structure of the Yeast Cpr Triple Mutant: D74G, Y75F, K78A. To be Published 0 0 0 0 2CDU THE CRYSTAL STRUCTURE OF WATER-FORMING NAD(P)H OXIDASE FROM LACTOBACILLUS SANFRANCISCENSIS 2006-01-30 2006-07-17 Lountos, G.T.,Jiang, R.,Wellborn, W.B.,Thaler, T.L.,Bommarius, A.S.,Orville, A.M. The crystal structure of NAD(P)H oxidase from Lactobacillus sanfranciscensis: insights into the conversion of O2 into two water molecules by the flavoenzyme. Biochemistry 2006 45 9648 9659 2B3B Thermus thermophilus Glucose/Galactose Binding Protein With Bound Glucose 2005-09-20 2006-07-18 Cuneo, M.J.,Changela, A.,Warren, J.J.,Beese, L.S.,Hellinga, H.W. The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. J.Mol.Biol. 2006 362 259 270 2B3F Thermus thermophilus Glucose/Galactose Binding Protein Bound With Galactose 2005-09-20 2006-07-18 Cuneo, M.J.,Changela, A.,Warren, J.J.,Beese, L.S.,Hellinga, H.W. The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. J.Mol.Biol. 2006 362 259 270 2G1J Crystal structure of Mycobacterium tuberculosis Shikimate Kinase at 2.0 angstrom resolution 2006-02-14 2006-07-18 Gan, J.,Gu, Y.,Li, Y.,Yan, H.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue. Biochemistry 2006 45 8539 8545 2G1K Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate at 1.75 angstrom resolution 2006-02-14 2006-07-18 Gan, J.,Gu, Y.,Li, Y.,Yan, H.,Ji, X. Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue. Biochemistry 2006 45 8539 8545 2H2U Crystal structure of the E130Y mutant of human soluble calcium-activated nucleotidase (SCAN) with calcium ion 2006-05-19 2006-07-18 Yang, M.,Horii, K.,Herr, A.B.,Kirley, T.L. Calcium-dependent dimerization of human soluble calcium activated nucleotidase: characterization of the dimer interface. J.Biol.Chem. 2006 281 28307 28317 2GTY Crystal structure of unliganded griffithsin 2006-04-28 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2GUD Crystal structure of a complex of griffithsin with mannose at 0.94 A resolution 2006-04-29 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2GUX Selenomethionine derivative of griffithsin 2006-05-01 2006-08-01 Ziolkowska, N.E.,O'keefe, B.R.,Mori, T.,Zhu, C.,Giomarelli, B.,Vojdani, F.,Palmer, K.E.,McMahon, J.B.,Wlodawer, A. Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure 2006 14 1127 1135 2F9T Structure of the type III CoaA from Pseudomonas aeruginosa 2005-12-06 2006-08-22 Hong, B.S.,Yun, M.K.,Zhang, Y.M.,Chohnan, S.,Rock, C.O.,White, S.W.,Jackowski, S.,Park, H.W.,Leonardi, R. Prokaryotic Type II and Type III Pantothenate Kinases: The Same Monomer Fold Creates Dimers with Distinct Catalytic Properties. Structure 2006 14 1251 1261 2F9W Structure of the type III CoaA from Pseudomonas aeruginosa 2005-12-06 2006-08-22 Hong, B.S.,Yun, M.K.,Zhang, Y.M.,Chohnan, S.,Rock, C.O.,White, S.W.,Jackowski, S.,Park, H.W.,Leonardi, R. Prokaryotic Type II and Type III Pantothenate Kinases: The Same Monomer Fold Creates Dimers with Distinct Catalytic Properties. Structure 2006 14 1251 1261 2GFE Crystal structure of the GluR2 A476E S673D Ligand Binding Core Mutant at 1.54 Angstroms Resolution 2006-03-21 2006-08-22 Weston, M.C.,Gertler, C.,Mayer, M.L.,Rosenmund, C. Interdomain interactions in AMPA and kainate receptors regulate affinity for glutamate. J.Neurosci. 2006 26 7650 7658 2GIC Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complex 2006-03-28 2006-08-22 Green, T.J.,Zhang, X.,Wertz, G.W.,Luo, M. Structure of the vesicular stomatitis virus nucleoprotein-RNA complex unveils how the RNA is sequestered Science 2006 313 357 360 2HLE Structural and biophysical characterization of the EPHB4-EPHRINB2 protein protein interaction and receptor specificity 2006-07-06 2006-08-22 Chrencik, J.E.,Brooun, A.,Kraus, M.L.,Recht, M.I.,Kolatkar, A.R.,Han, G.W.,Seifert, J.M.,Widmer, H.,Auer, M.,Kuhn, P. Structural and Biophysical Characterization of the EphB4-EphrinB2 Protein-Protein Interaction and Receptor Specificity. J.Biol.Chem. 2006 281 28185 28192 2FYN Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex 2006-02-08 2006-08-29 Esser, L.,Gong, X.,Yang, S.,Yu, L.,Yu, C.A.,Xia, D. Surface-modulated motion switch: Capture and release of iron-sulfur protein in the cytochrome bc1 complex. Proc.Natl.Acad.Sci.Usa 2006 103 13045 13050 2FYN Crystal Structure Analysis of the double mutant Rhodobacter Sphaeroides bc1 complex 2006-02-08 2006-08-29 Esser, L.,Gong, X.,Yang, S.,Yu, L.,Yu, C.A.,Xia, D. Surface-modulated motion switch: Capture and release of iron-sulfur protein in the cytochrome bc1 complex. Proc.Natl.Acad.Sci.Usa 2006 103 13045 13050 2H6F Protein Farnesyltransferase Complexed with a Farnesylated DDPTASACVLS Peptide Product at 1.5A Resolution 2006-05-31 2006-08-29 Terry, K.L.,Casey, P.J.,Beese, L.S. Conversion of protein farnesyltransferase to a geranylgeranyltransferase. Biochemistry 2006 45 9746 9755 2HV2 Crystal Structure of Conserved Protein of Unknown Function from Enterococcus faecalis V583 at 2.4 A Resolution, Probable N-Acyltransferase 2006-07-27 2006-08-29 Qiu, Y.,Tereshko, V.A.,Kossiakoff, A.A.,Joachimiak, A. Crystal structure of conserved hypothetical protein from Enterococcus faecalis V583 at 2.4 A resolution. To be Published 0 0 0 0 2I2O Crystal Structure of an eIF4G-like Protein from Danio rerio 2006-08-16 2006-08-29 BITTO, E.,WESENBERG, G.E.,PHILLIPS JR., G.N.,MCCOY, J.G.,BINGMAN, C.A. Crystal Structure of an eIF4G-like Protein from Danio rerio To be published 0 0 0 0 2I3C Crystal Structure of an Aspartoacylase from Homo Sapiens 2006-08-17 2006-08-29 Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,McCoy, J.G.,Phillips, G.N. Structure of aspartoacylase, the brain enzyme impaired in Canavan disease. Proc.Natl.Acad.Sci.Usa 2007 104 456 461 2I3F Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria 2006-08-18 2006-08-29 McCoy, J.G.,Wesenberg, G.E.,Phillips Jr., G.N.,Bitto, E.,Bingman, C.A.,Center for Eukaryotic Structural Genomics (CESG) Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria To be Published 0 0 0 0 2I3R Engineered catalytic domain of protein tyrosine phosphatase HPTPbeta 2006-08-20 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I3U Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-08-20 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4E Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4G Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with a sulfamic acid (soaking experiment) 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2I4H Structural studies of protein tyrosine phosphatase beta catalytic domain co-crystallized with a sulfamic acid inhibitor 2006-08-21 2006-08-29 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2FMX An open conformation of switch I revealed by Sar1-GDP crystal structure at low Mg(2+) 2006-01-10 2006-09-05 Rao, Y.,Bian, C.,Yuan, C.,Li, Y.,Chen, L.,Ye, X.,Huang, Z.,Huang, M. An open conformation of switch I revealed by Sar1-GDP crystal structure at low Mg(2+) Biochem.Biophys.Res.Commun. 2006 348 908 915 2GK2 Crystal structure of the N terminal domain of human CEACAM1 2006-03-31 2006-09-05 Fedarovich, A.,Tomberg, J.,Nicholas, R.A.,Davies, C. Structure of the N-terminal domain of human CEACAM1: binding target of the opacity proteins during invasion of Neisseria meningitidis and N. gonorrhoeae. Acta Crystallogr.,Sect.D 2006 62 971 979 2HK5 Hck Kinase in Complex with Lck targetted Inhibitor PG-1009247 2006-07-03 2006-09-05 Sabat, M.,VanRens, J.C.,Laufersweiler, M.J.,Brugel, T.A.,Maier, J.,Golebiowski, A.,De, B.,Easwaran, V.,Hsieh, L.C.,Walter, R.L.,Mekel, M.J.,Evdokimov, A.,Janusz, M.J. The development of 2-benzimidazole substituted pyrimidine based inhibitors of lymphocyte specific kinase (Lck). Bioorg.Med.Chem.Lett. 2006 16 5973 5977 2I5X Engineering the PTPbeta catalytic domain with improved crystallization properties 2006-08-26 2006-09-05 Evdokimov, A.G.,Pokross, M.,Walter, R.,Mekel, M.,Cox, B.,Li, C.,Bechard, R.,Genbauffe, F.,Andrews, R.,Diven, C.,Howard, B.,Rastogi, V.,Gray, J.,Maier, M.,Peters, K.G. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery. Acta Crystallogr.,Sect.D 2006 62 1435 1445 2HQ1 Crystal Structure of ORF 1438 a putative Glucose/ribitol dehydrogenase from Clostridium thermocellum 2006-07-18 2006-09-12 Li, Y.,Shaw, N.,Xu, H.,Cheng, C.,Chen, L.,Liu, Z.J.,ROSE, J.P.,WANG, B.C.,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS Crystal Structure of ORF 1438 a putative Glucose/ ribitol dehydrogenase from Clostridium thermocellum To be Published 0 0 0 0 2HIQ Crystal structure of JW1657 from Escherichia coli 2006-06-29 2006-09-12 Chen, L.Q.,Chen, L.R.,Liu, Z.-J.,Temple, W.,Lee, D.,Chang, S.-H.,Rose, J.P.,Ebihara, A.,Wang, B.-C. Crystal structure of JW1657 from Escherichia coli at 2.0A resolution To be Published 0 0 0 0 2HPV Crystal structure of FMN-Dependent azoreductase from Enterococcus faecalis 2006-07-17 2006-09-12 Liu, Z.J.,Chen, H.,Chen, L.,Shah, N.,Rose, J.P.,Wang, B.C. Crystal Structure of Fmn-Dependent Azoreductase from Enterococcus faecalis at 2.00 A resolution To be Published 0 0 0 0 2HQ8 Crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo form 2006-07-18 2006-09-12 Stepanyuk, G.A.,Liu, Z.J.,Markova, S.S.,Frank, L.A.,Lee, J.,Vysotski, E.S.,Wang, B.C. Crystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein. Photochem Photobiol Sci 2008 7 442 447 2I62 Mouse Nicotinamide N-methyltransferase 2006-08-27 2006-09-12 Wu, H.,Min, J.,Zeng, H.,Loppnau, P.,Weigelt, J.,Sundstrom, M.,Arrowsmith, C.H.,Edwards, A.M.,Bochkarev, A.,Plotnikov, A.N. The Crystal Structure of Mouse Nicotinamide N-methyltransferase in complex with SAH To be Published 0 0 0 0 2I7Q Crystal structure of Human Choline Kinase A 2006-08-31 2006-09-12 Rabeh, W.M.,Tempel, W.,Nedyalkova, L.,Wasney, G.,Landry, R.,Arrowsmith, C.H.,Edwards, A.M.,Sundstrom, M.,Weigelt, J.,Bochkarev, A.,Park, H. Crystal structure of Human Choline Kinase A To be Published 0 0 0 0 2H5I Crystal structure of caspase-3 with inhibitor Ac-DEVD-Cho 2006-05-26 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2H5J Crystal strusture of caspase-3 with inhibitor Ac-DMQD-Cho 2006-05-26 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2FSE Crystallographic structure of a rheumatoid arthritis MHC susceptibility allele, HLA-DR1 (DRB1*0101), complexed with the immunodominant determinant of human type II collagen 2006-01-22 2006-09-19 Rosloniec, E.F.,Ivey, R.A.,Whittington, K.B.,Kang, A.H.,Park, H.W. Crystallographic Structure of a Rheumatoid Arthritis MHC Susceptibility Allele, HLA-DR1 (DRB1*0101), Complexed with the Immunodominant Determinant of Human Type II Collagen. J.Immunol. 2006 177 3884 3892 2H65 Crystal strusture of caspase-3 with inhibitor Ac-VDVAD-Cho 2006-05-30 2006-09-19 Fang, B.,Boross, P.I.,Tozser, J.,Weber, I.T. Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition J.Mol.Biol. 2006 360 654 666 2HFP Crystal Structure of PPAR Gamma with N-sulfonyl-2-indole carboxamide ligands 2006-06-25 2006-09-19 Hopkins, C.R.,O'neil, S.V.,Laufersweiler, M.C.,Wang, Y.,Pokross, M.,Mekel, M.,Evdokimov, A.,Walter, R.,Kontoyianni, M.,Petrey, M.E.,Sabatakos, G.,Roesgen, J.T.,Richardson, E.,Demuth Jr., T.P. Design and synthesis of novel N-sulfonyl-2-indole carboxamides as potent PPAR-gamma binding agents with potential application to the treatment of osteoporosis. Bioorg.Med.Chem.Lett. 2006 16 5659 5663 2HQ4 Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii 2006-07-18 2006-09-19 Li, Y.,Marshall, M.,Chang, J.,Zhao, M.,Zhang, M.,Xu, H.,LIU, Z.J.,ROSE, J.P.,Wang, B.C.,Southeast Collaboratory for Structural Genomics Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii To be Published 0 0 0 0 2B26 The crystal structure of the protein complex of yeast Hsp40 Sis1 and Hsp70 Ssa1 2005-09-16 2006-09-19 Li, J.,Wu, Y.,Qian, X.,Sha, B. Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex. Biochem.J. 2006 398 353 360 2ID5 Crystal Structure of the Lingo-1 Ectodomain 2006-09-14 2006-09-26 Mosyak, L.,Wood, A.,Dwyer, B.,Johnson, M.,Zhong, X.,Kriz, R.,Stahl, M.,Pangalos, M.,Walsh, F.,Somers, W.S. The Structure of the Lingo-1 Ectodomain To be Published 0 0 0 0 2HS1 Ultra-high resolution X-ray crystal structure of HIV-1 protease V32I mutant with TMC114 (darunavir) inhibitor 2006-07-20 2006-10-03 Kovalevsky, A.Y.,Liu, F.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114. J.Mol.Biol. 2006 363 161 173 2HS2 Crystal structure of M46L mutant of HIV-1 protease complexed with TMC114 (darunavir) 2006-07-20 2006-10-03 Kovalevsky, A.Y.,Liu, F.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114. J.Mol.Biol. 2006 363 161 173 2ICY Crystal Structure of a Putative UDP-glucose Pyrophosphorylase from Arabidopsis Thaliana with Bound UDP-glucose 2006-09-13 2006-10-03 McCoy, J.G.,Bitto, E.,Bingman, C.A.,Wesenberg, G.E.,Bannen, R.M.,Kondrashov, D.A.,Phillips Jr., G.N. Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP. J.Mol.Biol. 2007 366 830 841 2IDW Crystal structure analysis of HIV-1 protease mutant V82A with a potent non-peptide inhibitor (UIC-94017) 2006-09-15 2006-10-03 Tie, Y.,Boross, P.I.,Wang, Y.F.,Gaddis, L.,Hussain, A.K.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. 2004 338 341 352 2IEN Crystal structure analysis of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) 2006-09-19 2006-10-03 Tie, Y.,Boross, P.I.,Wang, Y.F.,Gaddis, L.,Hussain, A.K.,Leshchenko, S.,Ghosh, A.K.,Louis, J.M.,Harrison, R.W.,Weber, I.T. High Resolution Crystal St