PDB_ID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1LLS CRYSTAL STRUCTURE OF UNLIGANDED MALTOSE BINDING PROTEIN WITH XENON 2002-04-30 2002-09-18 Rubin, S.M.,Lee, S.-Y.,Ruiz, E.J.,Pines, A.,Wemmer, D.E. DETECTION AND CHARACTERIZATION OF XENON-BINDING SITES IN PROTEINS BY 129XE NMR SPECTROSCOPY J.MOL.BIOL. 2002 322 425 440 1L8Q CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR 2002-03-21 2002-09-25 Erzberger, J.P.,Pirruccello, M.M.,Berger, J.M. The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation Embo J. 2002 21 4763 4773 1MU5 Structure of topoisomerase subunit 2002-09-23 2003-01-07 Corbett, K.D.,Berger, J.M. Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution Embo J. 2003 22 151 163 1MX0 Structure of topoisomerase subunit 2002-10-01 2003-01-07 Corbett, K.D.,Berger, J.M. Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution Embo J. 2003 22 151 163 1NM2 "Malonyl-CoA:ACP Transacylase" 2003-01-08 2003-01-21 Keatinge-Clay, A.T.,Shelat, A.A.,Savage, D.F.,Tsai, S.,Miercke, L.J.W.,O'Connell III, J.D.,Khosla, C.,Stroud, R.M. Catalysis, Specificity, and ACP Docking Site of Streptomyces coelicolor Malonyl-CoA:ACP Transacylase Structure 2003 11 147 154 1N0Q 3ANK: A designed ankyrin repeat protein with three identical consensus repeats 2002-10-14 2003-01-28 Mosavi, L.K.,Minor Jr., D.L.,Peng, Z.Y. Consensus-derived structural determinants of the ankyrin repeat motif. Proc.Natl.Acad.Sci.USA 2002 99 16029 16034 1N0R 4ANK: A designed ankyrin repeat protein with four identical consensus repeats 2002-10-14 2003-01-28 Mosavi, L.K.,Minor Jr., D.L.,Peng, Z.Y. Consensus-derived structural determinants of the ankyrin repeat motif. Proc.Natl.Acad.Sci.USA 2002 99 16029 16034 1MRU Intracellular Ser/Thr protein kinase domain of Mycobacterium tuberculosis PknB. 2002-09-18 2003-02-11 Young, T.A.,Delagoutte, B.,Endrizzi, J.A.,Falick, A.M.,Alber, T. Structure of Mycobacterium tuberculosis PknB supports a universal activation mechanism for Ser/Thr protein kinases. Nat.Struct.Biol. 2003 10 168 174 1NJG Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit 2002-12-30 2003-04-01 Podobnik, M.,Weitze, T.F.,O'Donnell, M.,Kuriyan, J. Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit Structure 2003 11 253 263 1PK5 Crystal structure of the orphan nuclear receptor LRH-1 2003-06-04 2003-07-01 Sablin, E.P.,Krylova, I.N.,Fletterick, R.J.,Ingraham, H.A. Structural basis for ligand-independent activation of the orphan nuclear receptor LRH-1 Mol. Cell 2003 11 1575 1585 1MGY Structure of the D85S mutant of bacteriorhodopsin with bromide bound 2002-08-16 2003-07-07 Facciotti, M.T.,Cheung, V.S.,Nguyen, D.,Rouhani, S.,Glaeser, R.M. Crystal Structure of the Bromide-Bound D85S Mutant of Bacteriorhodopsin: Principles of Ion Pumping Biophys.J. 2003 85 451 458 1PNS Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNS, CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNA MOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU. 2003-06-13 2003-07-15 Vila-Sanjurjo, A.,Ridgeway, W.K.,Seymaner, V.,Zhang, W.,Santoso, S.,Yu, K.,Cate, J.H.D. X-ray Crystal Structures of the WT and a Hyper-Accurate Ribosome From Escherichia Coli Proc.Natl.Acad.Sci.USA 2003 100 8682 8687 1PNU Crystal Structure of a Streptomycin Dependent Ribosome from Escherichia Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. 2003-06-13 2003-07-15 Vila-Sanjurjo, A.,Ridgeway, W.K.,Seymaner, V.,Zhang, W.,Santoso, S.,Yu, K.,Cate, J.H.D. X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli Proc.Natl.Acad.Sci.USA 2003 100 8682 8687 1PV4 X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA 2003-06-26 2003-07-22 Skordalakes, E.,Berger, J.M. Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading Cell (Cambridge,Mass.) 2003 114 135 146 1PVO X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP 2003-06-27 2003-07-22 Skordalakes, E.,Berger, J.M. Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading Cell (Cambridge,Mass.) 2003 114 135 146 1PVG Crystal Structure of the ATPase region of Saccharomyces Cerevisiae topoisomerase II 2003-06-27 2003-08-26 Classen, S.,Olland, S.,Berger, J.M. Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187 Proc.Natl.Acad.Sci.USA 2003 100 10629 10634 1QZR CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II BOUND TO ICRF-187 (DEXRAZOXANE) 2003-09-17 2003-09-30 Classen, S.,Olland, S.,Berger, J.M. Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187 Proc.Natl.Acad.Sci.USA 2003 100 10629 10634 1OYW Structure of the RecQ Catalytic Core 2003-04-07 2003-10-07 Bernstein, D.A.,Zittel, M.C.,Keck, J.L. High-resolution structure of the E. coli RecQ helicase catalytic core Embo J. 2003 22 4910 4921 1R3E Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit 2003-10-01 2003-11-04 Pan, H.,Agarwalla, S.,Moustakas, D.T.,Finer-Moore, J.,Stroud, R.M. Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA Recognition Through a Combination of Rigid Docking and Induced Fit Proc.Natl.Acad.Sci.USA 2003 100 12648 12653 1NY6 Crystal structure of sigm54 activator (AAA+ ATPase) in the active state 2003-02-11 2003-11-11 Lee, S.Y.,de la Torre, A.,Yan, D.,Kustu, S.,Nixon, B.T.,Wemmer, D.E. Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains Genes Dev. 2003 17 2552 2563 1O6A Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution 2003-10-24 2003-11-11 Joint Center for Structural Genomics (JCSG) Crystal structure of the C-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution To be published 0 0 0 0 1RC2 2.5 Angstrom Resolution X-ray Structure of Aquaporin Z 2003-11-03 2003-11-25 Savage, D.F.,Egea, P.F.,Robles-Colmenares, Y.,O'Connell III, J.D.,Stroud, R.M. Architecture and selectivity in aquaporins: 2.5 a X-ray structure of aquaporin Z Plos Biol. 2003 1 334 340 1Q74 The Crystal Structure of 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside Deacetylase (MshB) 2003-08-15 2003-12-02 Maynes, J.T.,Garen, C.,Cherney, M.M.,Newton, G.,Arad, D.,Av-Gay, Y.,Fahey, R.C.,James, M.N. The Crystal Structure of 1-D-myo-Inosityl 2-Acetamido-2-deoxy-alpha-D-glucopyranoside Deacetylase (MshB) from Mycobacterium tuberculosis Reveals a Zinc Hydrolase with a Lactate Dehydrogenase Fold. J.Biol.Chem. 2003 278 47166 47170 1R4M APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex 2003-10-07 2003-12-23 Walden, H.,Podgorski, M.S.,Huang, D.T.,Miller, D.W.,Howard, R.J.,Minor, D.L.,Holton, J.M.,Schulman, B.A. The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol.Cell 2003 12 1427 1437 1ROC Crystal structure of the histone deposition protein Asf1 2003-12-02 2003-12-23 Daganzo, S.M.,Erzberger, J.P.,Lam, W.M.,Skordalakes, E.,Zhang, R.,Franco, A.A.,Brill, S.J.,Adams, P.D.,Berger, J.M.,Kaufman, P.D. Structure and function of the conserved core of histone deposition protein Asf1. Curr.Biol. 2003 13 2148 2158 1RW7 Crystal Structure of YDR533Cp 2003-12-16 2004-01-20 Wilson, M.A.,Amour, C.V.St.,Collins, J.L.,Ringe, D.,Petsko, G.A. The 1.8-A resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily. Proc.Natl.Acad.Sci.USA 2004 101 1531 1536 1RJ9 Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY) 2003-11-18 2004-01-27 Egea, P.F.,Shan, S.O.,Napetschnig, J.,Savage, D.F.,Walter, P.,Stroud, R.M. Substrate twinning activates the signal recognition particle and its receptor Nature 2004 427 215 221 1RXZ C-terminal region of A. fulgidus FEN-1 complexed with A. fulgidus PCNA 2003-12-18 2004-01-27 Chapados, B.R.,Hosfield, D.J.,Han, S.,Qiu, J.,Yelent, B.,Shen, B.,Tainer, J.A. Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell (Cambridge,Mass.) 2004 116 39 50 1Q4X Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24 2003-08-04 2004-02-03 Borngraeber, S.,Budny, M.J.,Chiellini, G.,Cunha-Lima, S.T.,Togashi, M.,Webb, P.,Baxter, J.D.,Scanlan, T.S.,Fletterick, R.J. Ligand selectivity by seeking hydrophobicity in thyroid hormone receptor. Proc.Natl.Acad.Sci.USA 2003 100 15358 15363 1RY6 Crystal Structure of Internal Kinesin Motor Domain 2003-12-19 2004-04-13 Shipley, K.,Hekmat-Nejad, M.,Turner, J.,Moores, C.,Anderson, R.,Milligan, R.,Sakowicz, R.,Fletterick, R. Structure of a kinesin microtubule depolymerization machine. Embo J. 2004 23 1422 1432 1RWI Extracellular domain of Mycobacterium tuberculosis PknD 2003-12-16 2004-04-27 Good, M.C.,Greenstein, A.E.,Young, T.A.,Ng, H.L.,Alber, T. Sensor Domain of the Mycobacterium tuberculosis Receptor Ser/Thr Protein Kinase, PknD, forms a Highly Symmetric beta Propeller. J.Mol.Biol. 2004 339 459 469 1RWL Extracellular domain of Mycobacterium tuberculosis PknD 2003-12-16 2004-04-27 Good, M.C.,Greenstein, A.E.,Young, T.A.,Ng, H.L.,Alber, T. Sensor Domain of the Mycobacterium tuberculosis Receptor Ser/Thr Protein Kinase, PknD, forms a Highly Symmetric beta Propeller. J.Mol.Biol. 2004 339 459 469 1SUU Structure of DNA gyrase A C-terminal domain 2004-03-26 2004-04-27 Corbett, K.D.,Shultzaberger, R.K.,Berger, J.M. The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold. Proc.Natl.Acad.Sci.Usa 2004 101 7293 7298 1S1Q TSG101(UEV) domain in complex with Ubiquitin 2004-01-07 2004-05-04 Sundquist, W.I.,Schubert, H.L.,Kelly, B.N.,Hill, G.C.,Holton, J.M.,Hill, C.P. Ubiquitin recognition by the human TSG101 protein Mol. Cell 2004 13 783 789 1VK6 Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution 2004-04-30 2004-05-11 Joint Center for Structural Genomics (JCSG) Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution To be published 0 0 0 0 1VBZ Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution 2004-03-03 2004-05-18 Ke, A.,Zhou, K.,Ding, F.,Cate, J.H.D.,Doudna, J.A. A Conformational Switch controls hepatitis delta virus ribozyme catalysis NATURE 2004 429 201 205 1VKB Crystal structure of a protein with unknown function from UPF0131 family (gi: 13879369) from Mus musculus at 1.90 A resolution 2004-05-07 2004-05-18 Klock, H.E.,Schwarzenbacher, R.,Xu, Q.,McMullan, D.,Abdubek, P.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Koesema, E.,Kreusch, A.,Kuhn, P.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Paulsen, J.,Quijano, K.,Reyes, R.,Rife, C.,Sims, E.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,White, A.,Wolf, G.,Hodgson, K.O.,Wooley, J.,Lesley, S.A.,Wilson, I.A. Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 A resolution reveals a new fold. Proteins 2005 61 1132 1136 1VKD Crystal structure of a predicted glycosylase (TM1225) from Thermotoga maritima at 2.10 A resolution 2004-05-12 2004-05-25 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (TM1225) from Thermotoga maritima at 2.10 A resolution To be published 0 0 0 0 1S8J Nitrate-bound D85S mutant of bacteriorhodopsin 2004-02-02 2004-06-08 Facciotti, M.T.,Cheung, V.S.,Lunde, C.S.,Rouhani, S.,Baliga, N.S.,Glaeser, R.M. Specificity of anion binding in the substrate pocket of bacteriorhodopsin. Biochemistry 2004 43 4934 4943 1S8L Anion-free form of the D85S mutant of bacteriorhodopsin from crystals grown in the presence of halide 2004-02-02 2004-06-08 Facciotti, M.T.,Cheung, V.S.,Lunde, C.S.,Rouhani, S.,Baliga, N.S.,Glaeser, R.M. Specificity of anion binding in the substrate pocket of bacteriorhodopsin. Biochemistry 2004 43 4934 4943 1SF8 Crystal structure of the carboxy-terminal domain of htpG, the E. coli Hsp90 2004-02-19 2004-06-15 Harris, S.F.,Shiau, A.K.,Agard, D.A. The crystal structure of the carboxy-terminal dimerization domain of htpG, the Escherichia coli Hsp90, reveals a potential substrate binding site. Structure 2004 12 1087 1097 1SL4 Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4 2004-03-05 2004-06-15 Guo, Y.,Feinberg, H.,Conroy, E.,Mitchell, D.A.,Alvarez, R.,Blixt, O.,Taylor, M.E.,Weis, W.I.,Drickamer, K. Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR Nat.Struct.Mol.Biol. 2004 11 591 598 1T0H Crystal structure of the Rattus norvegicus voltage gated calcium channel beta subunit isoform 2a 2004-04-08 2004-06-15 Van Petegem, F.,Clark, K.A.,Chatelain, F.C.,Minor, D.L. Structure of a complex between a voltage-gated calcium channel beta-subunit and an alpha-subunit domain. Nature 2004 429 671 675 1T0J Crystal structure of a complex between voltage-gated calcium channel beta2a subunit and a peptide of the alpha1c subunit 2004-04-09 2004-06-15 Van Petegem, F.,Clark, K.A.,Chatelain, F.C.,Minor, D.L. Structure of a complex between a voltage-gated calcium channel beta-subunit and an alpha-subunit domain. Nature 2004 429 671 675 1SDM Crystal structure of kinesin-like calmodulin binding protein 2004-02-13 2004-06-22 Vinogradova, M.V.,Reddy, V.S.,Reddy, A.S.,Sablin, E.P.,Fletterick, R.J. Crystal structure of kinesin regulated by Ca(2+)-calmodulin. J.Biol.Chem. 2004 279 23504 23509 1TEX Mycobacterium smegmatis Stf0 Sulfotransferase with Trehalose 2004-05-25 2004-07-20 Mougous, J.D.,Petzold, C.J.,Senaratne, R.H.,Lee, D.H.,Akey, D.L.,Lin, F.L.,Munchel, S.E.,Pratt, M.R.,Riley, L.W.,Leary, J.A.,Berger, J.M.,Bertozzi, C.R. Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis. Nat.Struct.Mol.Biol. 2004 11 721 729 1TQY The Actinorhodin Ketosynthase/Chain Length Factor 2004-06-18 2004-07-27 Keatinge-Clay, A.T.,Maltby, D.A.,Medzihradszky, K.F.,Khosla, C.,Stroud, R.M. An antibiotic factory caught in action. Nat.Struct.Mol.Biol. 2004 11 888 893 1T9R Catalytic Domain Of Human Phosphodiesterase 5A 2004-05-18 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1T9S Catalytic Domain Of Human Phosphodiesterase 5A in Complex with GMP 2004-05-18 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1TAZ Catalytic Domain Of Human Phosphodiesterase 1B 2004-05-19 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1TB5 Catalytic Domain Of Human Phosphodiesterase 4B In Complex With AMP 2004-05-19 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1TB7 Catalytic Domain Of Human Phosphodiesterase 4D In Complex With AMP 2004-05-19 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1TBB Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Rolipram 2004-05-19 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1TBF Catalytic Domain Of Human Phosphodiesterase 5A in Complex with Sildenafil 2004-05-20 2004-08-03 Zhang, K.Y.J.,Card, G.L.,Suzuki, Y.,Artis, D.R.,Fong, D.,Gillette, S.,Hsieh, D.,Neiman, J.,West, B.L.,Zhang, C.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Bollag, G. A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases Mol.Cell 2004 15 279 286 1T97 Use of sequence duplication to engineer a ligand-triggered long-distance molecular switch in T4 lysosyme 2004-05-14 2004-08-17 Yousef, M.S.,Baase, W.A.,Matthews, B.W. Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme. Proc.Natl.Acad.Sci.USA 2004 101 11583 11586 1VL1 Crystal structure of 6-phosphogluconolactonase (TM1154) from Thermotoga maritima at 1.70A resolution 2004-06-30 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of 6-phosphogluconolactonase (TM1154) from Thermotoga maritima at 1.70 A resolution To be published 0 0 0 0 1VL6 Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution 2004-07-13 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution To be published 0 0 0 0 1VL6 Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution 2004-07-13 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution To be published 0 0 0 0 1VL7 Crystal structure of a member of the FMN-binding split barrel superfamily with unknown function (alr5027) from Nostoc sp. at 1.50 A resolution 2004-07-13 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (alr5027) from Nostoc sp. at 1.50 A resolution To be published 0 0 0 0 1VLG Crystal structure of Ferritin (TM1128) from Thermotoga maritima at 2.00 A resolution 2004-07-23 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of Ferritin (TM1128) from Thermotoga maritima at 2.00 A resolution To be published 0 0 0 0 1VLJ Crystal structure of NADH-dependent butanol dehydrogenase A (TM0820) from Thermotoga maritima at 1.78 A resolution 2004-07-28 2004-08-17 Joint Center for Structural Genomics (JCSG) Crystal structure of NADH-dependent butanol dehydrogenase A (TM0820) from Thermotoga maritima at 1.78 A resolution To be published 0 0 0 0 1SQ2 Crystal Structure Analysis of the Nurse Shark New Antigen Receptor (NAR) Variable Domain in Complex With Lyxozyme 2004-03-17 2004-08-24 Stanfield, R.L.,Dooley, H.,Flajnik, M.F.,Wilson, I.A. Crystal structure of a shark single-domain antibody V region in complex with lysozyme. Science 2004 305 1770 1773 1T6V Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme 2004-05-07 2004-08-24 Stanfield, R.L.,Dooley, H.,Flajnik, M.F.,Wilson, I.A. Crystal structure of a shark single-domain antibody V region in complex with lysozyme. Science 2004 305 1770 1773 1T73 Crystal structure of the androgen receptor ligand binding domain in complex with a FxxFF motif 2004-05-07 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T74 Crystal structure of the androgen receptor ligand binding domain in complex with a WxxLF motif 2004-05-07 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T76 Crystal structure of the androgen receptor ligand binding domain in complex with a WxxVW motif 2004-05-08 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T79 Crystal structure of the androgen receptor ligand binding domain in complex with a FxxLW motif 2004-05-08 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T7F Crystal structure of the androgen receptor ligand binding domain in complex with a LxxLL motif 2004-05-10 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T7M Crystal structure of the androgen receptor ligand binding domain in complex with a FxxYF motif 2004-05-10 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T7R Crystal structure of the androgen receptor ligand binding domain in complex with a FxxLF motif 2004-05-10 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1T7T Crystal structure of the androgen receptor ligand binding domain in complex with 5-alpha dihydrotestosterone 2004-05-10 2004-08-31 Hur, E.,Pfaff, S.J.,Payne, E.S.,Gron, H.,Buehrer, B.M.,Fletterick, R.J. Recognition and accommodation at the androgen receptor coactivator binding interface. Plos Biol. 2004 2 0 0 1U4H Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (oxygen complex) 2004-07-25 2004-08-31 Pellicena, P.,Karow, D.S.,Boon, E.M.,Marletta, M.A.,Kuriyan, J. Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases. Proc.Natl.Acad.Sci.Usa 2004 101 12854 12859 1QVE Crystal structure of the truncated K122-4 pilin from Pseudomonas aeruginosa 2003-08-27 2004-09-07 Audette, G.F.,Irvin, R.T.,Hazes, B. Crystallographic Analysis of the Pseudomonas aeruginosa Strain K122-4 Monomeric Pilin Reveals a Conserved Receptor-Binding Architecture Biochemistry 2004 43 11427 11435 1RG0 Monoclinic crystal form of the truncated K122-4 pilin from Pseudomonas aeruginosa 2003-11-10 2004-09-07 Audette, G.F.,Irvin, R.T.,Hazes, B. Crystallographic Analysis of the Pseudomonas aeruginosa Strain K122-4 Monomeric Pilin Reveals a Conserved Receptor-Binding Architecture Biochemistry 2004 43 11427 11435 1TT5 Structure of APPBP1-UBA3-Ubc12N26: a unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8 2004-06-21 2004-09-14 Huang, D.T.,Miller, D.W.,Mathew, R.,Cassell, R.,Holton, J.M.,Roussel, M.F.,Schulman, B.A. A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. Nat.Struct.Mol.Biol. 2004 11 927 935 1U77 Crystal Structure of Ammonia Channel AmtB from E. Coli 2004-08-02 2004-09-21 Khademi, S.,O'Connell III, J.,Remis, J.,Robles-Colmenares, Y.,Miercke, L.J.W.,Stroud, R.M. Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A Science 2004 305 1587 1594 1U7C Crystal Structure of AmtB from E.Coli with Methyl Ammonium. 2004-08-03 2004-09-21 Khademi, S.,O'Connell III, J.,Remis, J.,Robles-Colmenares, Y.,Miercke, L.J.W.,Stroud, R.M. Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A Science 2004 305 1587 1594 1U7G Crystal Structure of Ammonia Channel AmtB from E. Coli 2004-08-03 2004-09-21 Khademi, S.,O'Connell III, J.,Remis, J.,Robles-Colmenares, Y.,Miercke, L.J.W.,Stroud, R.M. Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A Science 2004 305 1587 1594 1VJV Crystal structure of Ubiquitin carboxyl-terminal hydrolase 6 (yfr010w) from Saccharomyces cerevisiae at 1.74 A resolution 2004-03-29 2004-09-21 Joint Center for Structural Genomics (JCSG) Crystal structure of Ubiquitin carboxyl-terminal hydrolase 6 (yfr010w) from Saccharomyces cerevisiae at 1.74 A resolution To be published 0 0 0 0 1VLL Crystal structure of alanine dehydrogenase (AF1665) from Archaeoglobus fulgidus at 2.80 A resolution 2004-08-03 2004-09-21 Joint Center for Structural Genomics (JCSG) Crystal structure of alanine dehydrogenase (AF1665) from Archaeoglobus fulgidus at 2.80 A resolution To be published 0 0 0 0 1VMA Crystal structure of Cell division protein ftsY (TM0570) from Thermotoga maritima at 1.60 A resolution 2004-09-15 2004-09-28 Joint Center for Structural Genomics (JCSG) Crystal structure of Cell division protein ftsY (TM0570) from Thermotoga maritima at 1.60 A resolution To be published 0 0 0 0 1TOE Unliganded structure of Hexamutant + A293D mutant of E. coli aspartate aminotransferase 2004-06-14 2004-10-05 Chow, M.A.,McElroy, K.E.,Corbett, K.D.,Berger, J.M.,Kirsch, J.F. Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase Biochemistry 2004 43 12780 12787 1TOG Hydrocinnamic acid-bound structure of SRHEPT + A293D mutant of E. coli aspartate aminotransferase 2004-06-14 2004-10-05 Chow, M.A.,McElroy, K.E.,Corbett, K.D.,Berger, J.M.,Kirsch, J.F. Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase Biochemistry 2004 43 12780 12787 1TOI Hydrocinnamic acid-bound structure of Hexamutant + A293D mutant of E. coli aspartate aminotransferase 2004-06-14 2004-10-05 Chow, M.A.,McElroy, K.E.,Corbett, K.D.,Berger, J.M.,Kirsch, J.F. Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase Biochemistry 2004 43 12780 12787 1TOJ Hydrocinnamic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase 2004-06-14 2004-10-05 Chow, M.A.,McElroy, K.E.,Corbett, K.D.,Berger, J.M.,Kirsch, J.F. Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase Biochemistry 2004 43 12780 12787 1TOK Maleic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase 2004-06-14 2004-10-05 Chow, M.A.,McElroy, K.E.,Corbett, K.D.,Berger, J.M.,Kirsch, J.F. Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase Biochemistry 2004 43 12780 12787 1VMF Crystal structure of a YbjQ-like fold proteins with unknown function (19176122) from Bacillus halodurans at 1.46 A resolution 2004-09-23 2004-10-05 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (10176122) from Bacillus halodurans at 1.46 A resolution To be published 0 0 0 0 1VMG Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution 2004-09-24 2004-10-05 Joint Center for Structural Genomics (JCSG) Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution To be published 0 0 0 0 1XDQ Structural and Biochemical Identification of a Novel Bacterial Oxidoreductase 2004-09-07 2004-10-12 Loschi, L.,Brokx, S.J.,Hills, T.L.,Zhang, G.,Bertero, M.G.,Lovering, A.L.,Weiner, J.H.,Strynadka, N.C. Structural and biochemical identification of a novel bacterial oxidoreductase. J.Biol.Chem. 2004 279 50391 50400 1VP5 Crystal structure of 2,5-diketo-D-gluconic acid reductase (TM1009) from Thermotoga maritima at 2.40 A resolution 2004-10-13 2004-10-26 Joint Center for Structural Genomics (JCSG) Crystal structure of 2,5-diketo-D-gluconic acid reductase (TM1009) from Thermotoga maritima at 2.40 A resolution To be published 0 0 0 0 1VP7 Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution 2004-10-14 2004-10-26 Joint Center for Structural Genomics (JCSG) Crystal structure of Exodeoxyribonuclease VII small subunit E.C.3.1.11.6 (NP_881400.1) from Bordetella pertussis at 2.40 A resolution To be published 0 0 0 0 1VP7 Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution 2004-10-14 2004-10-26 Joint Center for Structural Genomics (JCSG) Crystal structure of Exodeoxyribonuclease VII small subunit E.C.3.1.11.6 (NP_881400.1) from Bordetella pertussis at 2.40 A resolution To be published 0 0 0 0 1VP8 Crystal structure of a FMN-binding protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution 2004-10-14 2004-10-26 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution To be published 0 0 0 0 1VP8 Crystal structure of a FMN-binding protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution 2004-10-14 2004-10-26 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution To be published 0 0 0 0 1XPR Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB) 2004-10-09 2004-11-02 Skordalakes, E.,Brogan, A.P.,Park, B.S.,Kohn, H.,Berger, J.M. Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin Structure 2005 13 99 109 1XPU Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB) 2004-10-09 2004-11-02 Skordalakes, E.,Brogan, A.P.,Park, B.S.,Kohn, H.,Berger, J.M. Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin Structure 2005 13 99 109 1TM1 CRYSTAL STRUCTURE OF THE COMPLEX OF SUBTILISIN BPN' WITH CHYMOTRYPSIN INHIBITOR 2 2004-06-10 2004-11-09 Radisky, E.S.,Kwan, G.,Karen Lu, C.J.,Koshland Jr., D.E. Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,). Biochemistry 2004 43 13648 13656 1TM5 crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 M59A mutant 2004-06-10 2004-11-09 Radisky, E.S.,Kwan, G.,Karen Lu, C.J.,Koshland Jr., D.E. Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,). Biochemistry 2004 43 13648 13656 1TO1 crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 Y61A mutant 2004-06-11 2004-11-09 Radisky, E.S.,Kwan, G.,Karen Lu, C.J.,Koshland Jr., D.E. Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,). Biochemistry 2004 43 13648 13656 1TO2 crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 M59K, in pH 9 cryosoak 2004-06-11 2004-11-09 Radisky, E.S.,Kwan, G.,Karen Lu, C.J.,Koshland Jr., D.E. Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,). Biochemistry 2004 43 13648 13656 1VPB Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution 2004-10-15 2004-11-09 Joint Center for Structural Genomics (JCSG) Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution To be Published 0 0 0 0 1TXY E. coli PriB 2004-07-06 2004-11-16 Lopper, M.,Holton, J.M.,Keck, J.L. Crystal structure of PriB, a component of the Escherichia coli replication restart primosome Structure 2004 12 1967 1975 1VOQ Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOR Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOS Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOU Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOV Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOW Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOX Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOY Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOZ Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VP0 Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1XXO X-ray crystal structure of mycobacterium tuberculosis pyridoxine 5'-phosphate oxidase at 1.8 a resolution 2004-11-07 2004-11-16 Biswal, B.K.,Cherney, M.M.,Wang, M.,Garen, C.,James, M.N.G. X-ray crystal structure of mycobacterium tuberculosis pyridoxine 5'-phosphate oxidase at 1.8 a resolution To be Published 0 0 0 0 1TXO Crystal structure of the Mycobacterium tuberculosis serine/threonine phosphatase PstP/Ppp at 1.95 A. 2004-07-05 2004-11-23 Pullen, K.E.,Ng, H.L.,Sung, P.Y.,Good, M.C.,Smith, S.M.,Alber, T. An Alternate Conformation and a Third Metal in PstP/Ppp, the M. tuberculosis PP2C-Family Ser/Thr Protein Phosphatase. Structure 2004 12 1947 1954 1RLO Phospho-aspartyl Intermediate Analogue of ybiV from E. coli K12 2003-11-26 2004-12-07 Roberts, A.,Lee, S.Y.,McCullagh, E.,Silversmith, R.E.,Wemmer, D.E. Ybiv from Escherichia coli K12 is a HAD phosphatase. Proteins 2005 58 790 801 1VPY Crystal structure of a TIM alpha/beta barrel protein with unknown function (ef0366) from Enterococcus faecalis v583 at 2.52 A resolution 2004-11-23 2004-12-07 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (ef0366) from Enterococcus faecalis v583 at 2.52 A resolution To be published 0 0 0 0 1VPM Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution 2004-11-11 2004-12-14 Joint Center for Structural Genomics (JCSG) Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution To be published 0 0 0 0 1XIP Crystal Structure of the N-terminal Domain of Nup159 2004-09-21 2004-12-14 Weirich, C.S.,Erzberger, J.P.,Berger, J.M.,Weis, K. The N-Terminal Domain of Nup159 Forms a beta-Propeller that Functions in mRNA Export by Tethering the Helicase Dbp5 to the Nuclear Pore Mol.Cell 2004 16 749 760 1XLX Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Cilomilast 2004-09-30 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. Structure 2004 12 2233 2247 1XLZ Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Filaminast 2004-09-30 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XM4 Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Piclamilast 2004-10-01 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XM6 Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R)-Mesopram 2004-10-01 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XMU Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Roflumilast 2004-10-04 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XMY Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R)-Rolipram 2004-10-04 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XN0 Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R,S)-Rolipram 2004-10-04 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOM Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Cilomilast 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XON Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Piclamilast 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOQ Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Roflumilast 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOR Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Zardaverine 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOS Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Sildenafil 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOT Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Vardenafil 2004-10-06 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XOZ Catalytic Domain Of Human Phosphodiesterase 5A In Complex With Tadalafil 2004-10-07 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1XP0 Catalytic Domain Of Human Phosphodiesterase 5A In Complex With Vardenafil 2004-10-07 2004-12-14 Card, G.L.,England, B.P.,Suzuki, Y.,Fong, D.,Powell, B.,Lee, B.,Luu, C.,Tabrizizad, M.,Gillette, S.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE 2004 12 2233 2247 1Y0H Structure of Rv0793 from Mycobacterium tuberculosis 2004-11-15 2004-12-28 Lemieux, M.J.,Ference, C.,Cherney, M.M.,Wang, M.,Garen, C.,James, M.N. The crystal structure of Rv0793, a hypothetical monooxygenase from M. tuberculosis J.Struct.Funct.Genomics 2005 6 245 257 1VQS Crystal structure of a NIPSNAP family protein with unknown function (np_356412.1) from Agrobacterium tumefaciens at 1.50 A resolution 2004-12-20 2005-01-11 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (np_356412.1) from Agrobacterium tumefaciens at 1.50 A resolution To be published 0 0 0 0 1VQS Crystal structure of a NIPSNAP family protein with unknown function (np_356412.1) from Agrobacterium tumefaciens at 1.50 A resolution 2004-12-20 2005-01-11 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (np_356412.1) from Agrobacterium tumefaciens at 1.50 A resolution To be published 0 0 0 0 2BGK X-RAY STRUCTURE OF APO-SECOISOLARICIRESINOL DEHYDROGENASE 2004-12-23 2005-01-13 Youn, B.,Moinuddin, S.G.,Davin, L.B.,Lewis, N.G.,Kang, C. Crystal structures of apo-form and binary/ternary complexes of Podophyllum secoisolariciresinol dehydrogenase, an enzyme involved in formation of health-protecting and plant defense lignans. J.Biol.Chem. 2005 280 12917 12926 1VQY Crystal structure of a NIPSNAP family protein with unknown function (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution 2005-01-07 2005-01-18 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution To be published 0 0 0 0 1VQY Crystal structure of a NIPSNAP family protein with unknown function (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution 2005-01-07 2005-01-18 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution To be published 0 0 0 0 1T5Z Crystal Structure of the Androgen Receptor Ligand Binding Domain (LBD) with DHT and a peptide derived from its physiological coactivator ARA70 2004-05-05 2005-01-25 Estebanez-Perpina, E.,Moore, J.M.R.,Mar, E.,Delgado-Rodrigues, E.,Nguyen, P.,Baxter, J.D.,Buehrer, B.M.,Webb, P.,Fletterick, R.J.,Guy, R.K. The Molecular Mechanisms of Coactivator Utilization in Ligand-dependent Transactivation by the Androgen Receptor. J.Biol.Chem. 2005 280 8060 8068 1T63 Crystal Structure of the Androgen Receptor Ligand Binding Domain with DHT and a peptide derived from its physiological coactivator GRIP1 NR box3 2004-05-05 2005-01-25 Estebanez-Perpina, E.,Moore, J.M.R.,Mar, E.,Delgado-Rodrigues, E.,Nguyen, P.,Baxter, J.D.,Buehrer, B.M.,Webb, P.,Fletterick, R.J.,Guy, R.K. The Molecular Mechanisms of Coactivator Utilization in Ligand-dependent Transactivation by the Androgen Receptor. J.Biol.Chem. 2005 280 8060 8068 1T65 Crystal structure of the androgen receptor ligand binding domain with DHT and a peptide derived form its physiological coactivator GRIP1 NR box 2 bound in a non-helical conformation 2004-05-05 2005-01-25 Estebanez-Perpina, E.,Moore, J.M.R.,Mar, E.,Delgado-Rodrigues, E.,Nguyen, P.,Baxter, J.D.,Buehrer, B.M.,Webb, P.,Fletterick, R.J.,Guy, R.K. 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Proteins 2006 65 771 776 1Y4C Designed Helical Protein fusion MBP 2004-11-30 2005-02-15 LaPorte, S.L.,Forsyth, C.M.,Cunningham, B.C.,Miercke, L.J.,Akhavan, D.,Stroud, R.M. De novo design of an IL-4 antagonist and its structure at 1.9 A. Proc.Natl.Acad.Sci.Usa 2005 102 1889 1894 1XZ0 Crystal structure of CD1a in complex with a synthetic mycobactin lipopeptide 2004-11-11 2005-03-01 Zajonc, D.M.,Crispin, M.D.,Bowden, T.A.,Young, D.C.,Cheng, T.Y.,Hu, J.,Costello, C.E.,Rudd, P.M.,Dwek, R.A.,Miller, M.J.,Brenner, M.B.,Moody, D.B.,Wilson, I.A. Molecular Mechanism of Lipopeptide Presentation by CD1a. Immunity 2005 22 209 219 1Y2B Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1H-pyrazole-4-carboxylic acid ethyl ester 2004-11-22 2005-03-01 Card, G.L.,Blasdel, L.,England, B.P.,Zhang, C.,Suzuki, Y.,Gillette, S.,Fong, D.,Ibrahim, P.N.,Artis, D.R.,Bollag, G.,Milburn, M.V.,Kim, S.-H.,Schlessinger, J.,Zhang, K.Y.J. 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A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design Nat.Biotechnol. 2005 23 201 207 1YV5 Human farnesyl diphosphate synthase complexed with Mg and risedronate 2005-02-15 2005-03-01 Kavanagh, K.L.,Guo, K.,Oppermann, U. Human farnesyl diphosphate synthase complexed with the clinical inhibitor riesdronate To be Published 0 0 0 0 1XIL HYDROGEN BONDING IN HUMAN MANGANESE SUPEROXIDE DISMUTASE CONTAINING 3-FLUOROTYROSINE 2004-09-21 2005-03-08 Ayala, I.,Perry, J.J.,Szczepanski, J.,Tainer, J.A.,Vala, M.T.,Nick, H.S.,Silverman, D.N. Hydrogen bonding in human manganese superoxide dismutase containing 3-fluorotyrosine Biophys.J. 2005 89 4171 4179 1YIB Crystal Structure of the Human EB1 C-terminal Dimerization Domain 2005-01-11 2005-03-08 Slep, K.C.,Rogers, S.L.,Elliott, S.L.,Ohkura, H.,Kolodziej, P.A.,Vale, R.D. Structural determinants for EB1-mediated recruitment of APC and spectraplakins to the microtubule plus end J.Cell Biol. 2005 168 587 598 1YIG Crystal Structure of the Human EB1 C-terminal Dimerization Domain 2005-01-11 2005-03-08 Slep, K.C.,Rogers, S.L.,Elliott, S.L.,Ohkura, H.,Kolodziej, P.A.,Vale, R.D. Structural determinants for EB1-mediated recruitment of APC and spectraplakins to the microtubule plus end J.Cell Biol. 2005 168 587 598 1VR7 Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution 2005-02-15 2005-03-15 Joint Center for Structural Genomics (JCSG) Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from Thermotoga Maritima at 1.2 A resolution To be Published 0 0 0 0 1VR9 Crystal structure of CBS domain protein/ACT domain protein (TM0892) from Thermotoga maritima at 1.70 A resolution 2005-02-17 2005-03-15 Joint Center for Structural Genomics (JCSG) Crystal structure of CBS domain protein/ACT domain protein (TM0892) from Thermotoga maritima at 1.70 A resolution To be published 0 0 0 0 1VRB Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution 2005-02-18 2005-03-15 Joint Center for Structural Genomics (JCSG) Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution To be published 0 0 0 0 1YJ5 Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme 2005-01-13 2005-03-15 Bernstein, N.K.,Williams, R.S.,Rakovszky, M.L.,Cui, D.,Green, R.,Karimi-Busheri, F.,Mani, R.S.,Galicia, S.,Koch, C.A.,Cass, C.E.,Durocher, D.,Weinfeld, M.,Glover, J.N. The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase. Mol.Cell 2005 17 657 670 1YJM Crystal structure of the FHA domain of mouse polynucleotide kinase in complex with an XRCC4-derived phosphopeptide. 2005-01-14 2005-03-15 Bernstein, N.K.,Williams, R.S.,Rakovszky, M.L.,Cui, D.,Green, R.,Karimi-Busheri, F.,Mani, R.S.,Galicia, S.,Koch, C.A.,Cass, C.E.,Durocher, D.,Weinfeld, M.,Glover, J.N. The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase. Mol.Cell 2005 17 657 670 1YMT Mouse SF-1 LBD 2005-01-21 2005-03-15 Krylova, I.N.,Sablin, E.P.,Moore, J.,Xu, R.X.,Waitt, G.M.,MacKay, J.A.,Juzumiene, D.,Bynum, J.M.,Madauss, K.,Montana, V.,Lebedeva, L.,Suzawa, M.,Williams, J.D.,Williams, S.P.,Guy, R.K.,Thornton, J.W.,Fletterick, R.J.,Willson, T.M.,Ingraham, H.A. Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1 Cell (Cambridge,Mass.) 2005 120 343 355 1YXM Crystal structure of peroxisomal trans 2-enoyl CoA reductase 2005-02-22 2005-03-15 Jansson, A.,Ng, S.,Arrowsmith, C.,Sharma, S.,Edwards, A.M.,Von Delft, F.,Sundstrom, M.,Oppermann, U. Crystal structure of perixomal trans 2-enoyl CoA reductase (PECRA) To be Published 0 0 0 0 1XDC Hydrogen Bonding in Human Manganese Superoxide Dismutase containing 3-Fluorotyrosine 2004-09-05 2005-03-22 Ayala, I.,Perry, J.J.,Szczepanski, J.,Tainer, J.A.,Vala, M.T.,Nick, H.S.,Silverman, D.N. Hydrogen bonding in human manganese superoxide dismutase containing 3-fluorotyrosine Biophys.J. 2005 89 4171 4179 1YUY HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE GENOTYPE 2a 2005-02-14 2005-03-22 Biswal, B.K.,Cherney, M.M.,Wang, M.,Chan, L.,Yannopoulos, C.G.,Bilimoria, D.,Nicolas, O.,Bedard, J.,James, M.N.G. Crystal structures of the RNA dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors. J.Biol.Chem. 2005 280 18202 18210 1YV2 Hepatitis C virus NS5B RNA-dependent RNA Polymerase genotype 2a 2005-02-14 2005-03-22 Biswal, B.K.,Cherney, M.M.,Wang, M.,Chan, L.,Yannopoulos, C.G.,Bilimoria, D.,Nicolas, O.,Bedard, J.,James, M.N.G. Crystal Structures of the RNA-dependent RNA Polymerase Genotype 2a of Hepatitis C Virus Reveal Two Conformations and Suggest Mechanisms of Inhibition by Non-nucleoside Inhibitors J.Biol.Chem. 2005 280 18202 18210 1YVX Hepatitis C Virus RNA Polymerase Genotype 2a In Complex With Non- Nucleoside Analogue Inhibitor 2005-02-16 2005-03-22 Biswal, B.K.,Cherney, M.M.,Wang, M.,Chan, L.,Yannopoulos, C.G.,Bilimoria, D.,Nicolas, O.,Bedard, J.,James, M.N.G. 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An unbiased cell morphology-based screen for new, biologically active small molecules Plos Biol. 2005 3 128 128 1YLY X-ray crystallographic structure of CTX-M-9 beta-lactamase complexed with ceftazidime-like boronic acid 2005-01-19 2005-04-26 Chen, Y.,Shoichet, B.,Bonnet, R. Structure, Function, and Inhibition along the Reaction Coordinate of CTX-M beta-Lactamases. J.Am.Chem.Soc. 2005 127 5423 5434 1YLZ X-ray crystallographic structure of CTX-M-14 beta-lactamase complexed with ceftazidime-like boronic acid 2005-01-19 2005-04-26 Chen, Y.,Shoichet, B.,Bonnet, R. Structure, Function, and Inhibition along the Reaction Coordinate of CTX-M beta-Lactamases. J.Am.Chem.Soc. 2005 127 5423 5434 1YM1 X-ray crystallographic structure of CTX-M-9 beta-lactamase complexed with a boronic acid inhibitor (SM2) 2005-01-20 2005-04-26 Chen, Y.,Shoichet, B.,Bonnet, R. Structure, Function, and Inhibition along the Reaction Coordinate of CTX-M beta-Lactamases. 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J.Biol.Chem. 2006 281 13324 13332 2GD9 Crystal structure of (2636623) from BACILLUS SUBTILIS at 2.30 A resolution 2006-03-15 2006-03-28 Joint Center for Structural Genomics (JCSG) Crystal structure of (2636623) from BACILLUS SUBTILIS at 2.30 A resolution To be published 0 0 0 0 2FR0 The first ketoreductase of the erythromycin synthase (crystal form 1) 2006-01-18 2006-04-04 Keatinge-Clay, A.T.,Stroud, R.M. The Structure of a Ketoreductase Determines the Organization of the beta-Carbon Processing Enzymes of Modular Polyketide Synthases Structure 2006 14 737 748 2FR1 The first ketoreductase of the erythromycin synthase (crystal form 2) 2006-01-18 2006-04-04 Keatinge-Clay, A.T.,Stroud, R.M. 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Biochemistry 2007 46 8744 8752 2Z1Z Crystal structure of LL-Diaminopimelate Aminotransferase from Arabidopsis thaliana complexed with L-malate ion 2007-05-16 2007-07-17 Watanabe, N.,Cherney, M.M.,van Belkum, M.J.,Marcus, S.L.,Flegel, M.D.,Clay, M.D.,Deyholos, M.K.,Vederas, J.C.,James, M.N. Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana: a recently discovered enzyme in the biosyn