PDB_ID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1MZF Human Factor inhibiting HIF (FIH1) in Complex with 2-oxoglutarate 2002-10-07 2002-11-20 Dann III, C.E.,Bruick, R.K.,Deisenhofer, J. Structure of Factor-Inhibiting Hypoxia-Inducible Factor 1: An Asparaginyl Hydroxylase Involved in the Hypoxic Response Pathway. Proc.Natl.Acad.Sci.USA 2002 99 15351 15356 1NVV Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS 2003-02-04 2003-04-01 Margarit, S.M.,Sondermann, H.,Hall, B.E.,Nagar, B.,Hoelz, A.,Pirruccello, M.,Bar-Sagi, D.,Kuriyan, J. Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS Cell (Cambridge,Mass.) 2003 112 685 695 1NVW Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS 2003-02-04 2003-04-01 Margarit, S.M.,Sondermann, H.,Hall, B.E.,Nagar, B.,Hoelz, A.,Pirruccello, M.,Bar-Sagi, D.,Kuriyan, J. Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS Cell (Cambridge,Mass.) 2003 112 685 695 1OPK Structural basis for the auto-inhibition of c-Abl tyrosine kinase 2003-03-06 2003-04-08 Nagar, B.,Hantschel, O.,Young, M.A.,Scheffzek, K.,Veach, D.,Bornmann, W.,Clarkson, B.,Superti-Furga, G.,Kuriyan, J. Structural basis for the autoinhibition of c-Abl tyrosine kinase Cell (Cambridge,Mass.) 2003 112 859 871 1OY6 Structural Basis of the Multiple Binding Capacity of the AcrB Multidrug Efflux Pump 2003-04-03 2003-05-13 Yu, E.W.,McDermott, G.,Zgurskaya, H.I.,Nikaido, H.,Koshland, D.E. Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 2003 300 976 980 1OY8 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump 2003-04-03 2003-05-13 Yu, E.W.,McDermott, G.,Zgurskaya, H.I.,Nikaido, H.,Koshland, D.E. Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 2003 300 976 980 1OY9 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump 2003-04-03 2003-05-13 Yu, E.W.,McDermott, G.,Zgurskaya, H.I.,Nikaido, H.,Koshland, D.E. Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 2003 300 976 980 1OYD Structural Basis of Multiple Binding Capacity of the AcrB multidrug Efflux Pump 2003-04-03 2003-05-13 Yu, E.W.,McDermott, G.,Zgurskaya, H.I.,Nikaido, H.,Koshland, D.E. Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 2003 300 976 980 1OYE Structural Basis of Multiple Binding Capacity of the AcrB multidrug Efflux Pump 2003-04-03 2003-05-13 Yu, E.W.,McDermott, G.,Zgurskaya, H.I.,Nikaido, H.,Koshland, D.E. Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump. Science 2003 300 976 980 1PKF Crystal Structure of Epothilone D-bound Cytochrome P450epoK 2003-06-05 2003-10-28 Nagano, S.,Li, H.,Shimizu, H.,Nishida, C.,Ogura, H.,Ortiz de Montellano, P.R.,Poulos, T.L. Crystal Structures of Epothilone D-bound, Epothilone B-bound, and Substrate-free Forms of Cytochrome P450epoK J.Biol.Chem. 2003 278 44886 44893 1Q5D Epothilone B-bound Cytochrome P450epoK 2003-08-06 2003-10-28 Nagano, S.,Li, H.,Shimizu, H.,Nishida, C.,Ogura, H.,Ortiz de Montellano, P.R.,Poulos, T.L. Crystal structures of epothilone D-bound, epothilone B-bound, and substrate-free forms of cytochrome P450epoK J.Biol.Chem. 2003 278 44886 44893 1Q5E Substrate-free Cytochrome P450epoK 2003-08-06 2003-10-28 Nagano, S.,Li, H.,Shimizu, H.,Nishida, C.,Ogura, H.,Ortiz de Montellano, P.R.,Poulos, T.L. Crystal structures of epothilone D-bound, epothilone B-bound, and substrate-free forms of cytochrome P450epoK J.Biol.Chem. 2003 278 44886 44893 1QYC Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic ether reductases, and their relationship to isoflavone reductases 2003-09-10 2003-11-04 Min, T.,Kasahara, H.,Bedgar, D.L.,Youn, B.,Lawrence, P.K.,Gang, D.R.,Halls, S.C.,Park, H.,Hilsenbeck, J.L.,Davin, L.B.,Lewis, N.G.,Kang, C. Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic ether reductases and their relationship to isoflavone reductases. J.Biol.Chem. 2003 278 50714 50723 1QZG Crystal structure of Pot1 (protection of telomere)- ssDNA complex 2003-09-16 2003-11-18 Lei, M.,Podell, E.R.,Baumann, P.,Cech, T.R. DNA self-recognition in the structure of Pot1 bound to telomeric single-stranded DNA Nature 2003 426 198 203 1QZH Crystal structure of Pot1 (protection of telomere)- ssDNA complex 2003-09-16 2003-11-25 Lei, M.,Podell, E.R.,Baumann, P.,Cech, T.R. DNA self-recognition in the structure of Pot1 bound to telomeric single-stranded DNA Nature 2003 426 198 203 1R75 Leishmania major hypothetical protein 2003-10-17 2003-12-02 Han, G.W.,Merritt, E.A. LEISHMANIA MAJOR HYPOTHETICAL PROTEIN To be Published 0 0 0 0 1Q9C Crystal Structure of the Histone domain of Son of Sevenless 2003-08-24 2003-12-09 Sondermann, H.,Soisson, S.M.,Bar-Sagi, D.,Kuriyan, J. Tandem Histone Folds in the Structure of the N-terminal Segment of the Ras Activator Son of Sevenless Structure 2003 11 1583 1593 1VJ1 Crystal structure of putative NADPH-dependent oxidoreductase from Mus musculus at 2.10 A resolution 2003-12-03 2003-12-09 Levin, I.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Ambing, E.,Biorac, T.,Cambell, J.,Canaves, J.M.,Chiu, H.J.,Dai, X.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hampton, E.,Jaroszewski, L.,Karlak, C.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,McPhillips, T.M.,Miller, M.D.,Morse, A.,Moy, K.,Ouyang, J.,Page, R.,Quijano, K.,Reyes, R.,Robb, A.,Sims, E.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,von Delft, F.,Wang, X.,West, B.,Wolf, G.,Xu, Q.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution Proteins 2004 56 629 633 1Q5I Crystal structure of bacteriorhodopsin mutant P186A crystallized from bicelles 2003-08-07 2004-01-06 Yohannan, S.,Faham, S.,Yang, D.,Whitelegge, J.P.,Bowie, J.U. The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. Proc.Natl.Acad.Sci.USA 2004 101 959 963 1Q5J Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles 2003-08-07 2004-01-06 Yohannan, S.,Faham, S.,Yang, D.,Whitelegge, J.P.,Bowie, J.U. The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. Proc.Natl.Acad.Sci.USA 2004 101 959 963 1RYN Structure of the Chloroplast Group II Intron Splicing Factor CRS2 2003-12-22 2004-01-06 Ostheimer, G.J.,Hadjivasiliou, H.,Kloer, D.P.,Barkan, A.,Matthews, B.W. Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces J.Mol.Biol. 2005 345 51 68 1Q2O Bovine endothelial nitric oxide synthase N368D mutant heme domain dimer with L-N(omega)-nitroarginine-2,4-L-diaminobutyramide bound 2003-07-25 2004-01-13 Flinspach, M.L.,Li, H.,Jamal, J.,Yang, W.,Huang, H.,Hah, J.M.,Gomez-Vidal, J.A.,Litzinger, E.A.,Silverman, R.B.,Poulos, T.L. Structural basis for dipeptide amide isoform-selective inhibition of neuronal nitric oxide synthase. Nat.Struct.Mol.Biol. 2004 11 54 59 1R65 Crystal structure of ferrous soaked Ribonucleotide Reductase R2 subunit (wildtype) at pH 5 from E. coli 2003-10-14 2004-01-13 Voegtli, W.C.,Sommerhalter, M.,Saleh, L.,Baldwin, J.,Bollinger Jr., J.M.,Rosenzweig, A.C. Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2. J.Am.Chem.Soc. 2003 125 15822 15830 1RZX Crystal Structure of a Par-6 PDZ-peptide Complex 2003-12-29 2004-01-27 Peterson, F.C.,Penkert, R.R.,Volkman, B.F.,Prehoda, K.E. Cdc42 regulates the Par-6 PDZ domain through an allosteric CRIB-PDZ transition. Mol. Cell 2004 13 665 676 1RFF Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octapeptide KLNYYDPR, and tetranucleotide AGTT. 2003-11-08 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RFI Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, pentapeptide KLNYK, and tetranucleotide AGTC 2003-11-10 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RG1 Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTT 2003-11-10 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RG2 Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTA 2003-11-11 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RGT Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTC 2003-11-12 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RGU The crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTG 2003-11-13 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1RH0 Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine and trinucleotide GTT 2003-11-13 2004-03-02 Davies, D.R.,Interthal, H.,Champoux, J.J.,Hol, W.G. Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. J.Med.Chem. 2004 47 829 837 1S51 Thr24Ser Bacteriorhodopsin 2004-01-19 2004-03-02 Yohannan, S.,Faham, S.,Yang, D.,Grosfeld, D.,Chamberlain, A.K.,Bowie, J.U. A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing J.Am.Chem.Soc. 2004 126 2284 2285 1S52 Thr24Val Bacteriorhodopsin 2004-01-19 2004-03-02 Yohannan, S.,Faham, S.,Yang, D.,Grosfeld, D.,Chamberlain, A.K.,Bowie, J.U. A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing J.Am.Chem.Soc. 2004 126 2284 2285 1S53 Thr46Ser Bacteriorhodopsin 2004-01-19 2004-03-02 Yohannan, S.,Faham, S.,Yang, D.,Grosfeld, D.,Chamberlain, A.K.,Bowie, J.U. A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing J.Am.Chem.Soc. 2004 126 2284 2285 1S54 Thr24Ala Bacteriorhodopsin 2004-01-19 2004-03-02 Yohannan, S.,Faham, S.,Yang, D.,Grosfeld, D.,Chamberlain, A.K.,Bowie, J.U. A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing J.Am.Chem.Soc. 2004 126 2284 2285 1VJ0 Crystal structure of Alcohol dehydrogenase (TM0436) from Thermotoga maritima at 2.00 A resolution 2003-12-02 2004-03-02 Joint Center for Structural Genomics (JCSG) Crystal structure of Alcohol dehydrogenase (TM0436) from Thermotoga maritima at 2.00 A resolution To be published 0 0 0 0 1PZJ Cholera Toxin B-Pentamer Complexed With Nitrophenyl Galactoside 5 2003-07-11 2004-03-09 Mitchell, D.D.,Pickens, J.C.,Korotkov, K.,Fan, E.,Hol, W.G.J. 3,5-Substituted phenyl galactosides as leads in designing effective cholera toxin antagonists; synthesis and crystallographic studies Bioorg.Med.Chem. 2004 12 907 920 1SIX Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP 2004-03-01 2004-03-09 Chan, S.,Segelke, B.,Lekin, T.,Krupka, H.,Cho, U.S.,Kim, M.-Y.,So, M.,Kim, C.-Y.,Naranjo, C.M.,Rogers, Y.C.,Park, M.S.,Waldo, G.S.,Pashkov, I.,Cascio, D.,Perry, J.L.,Sawaya, M.R. Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J.Mol.Biol. 2004 341 503 517 1SJN Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP 2004-03-04 2004-03-09 Chan, S.,Segelke, B.,Lekin, T.,Krupka, H.,Cho, U.S.,Kim, M.-Y.,So, M.,Kim, C.-Y.,Naranjo, C.M.,Rogers, Y.C.,Park, M.S.,Waldo, G.S.,Pashkov, I.,Cascio, D.,Perry, J.L.,Sawaya, M.R. Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J.Mol.Biol. 2004 341 503 517 1VJF Crystal structure of putative DNA-binding protein from Caulobacter crescentus at 1.62 A resolution 2004-02-11 2004-03-09 Joint Center for Structural Genomics (JCSG) Crystal structure of putative DNA-binding protein from Caulobacter crescentus at 1.62 A resolution To be published 0 0 0 0 1RKU Crystal Structure of ThrH gene product of Pseudomonas Aeruginosa 2003-11-23 2004-03-30 Singh, S.K.,Yang, K.,Karthikeyan, S.,Huynh, T.,Zhang, X.,Phillips, M.A.,Zhang, H. The thrH Gene Product of Pseudomonas aeruginosa Is a Dual Activity Enzyme with a Novel Phosphoserine:Homoserine Phosphotransferase Activity. J.Biol.Chem. 2004 279 13166 13173 1VJR Crystal structure of 4-nitrophenylphosphatase (TM1742) from Thermotoga maritima at 2.40 A resolution 2004-03-22 2004-03-30 Joint Center for Structural Genomics (JCSG) Crystal structure of 4-nitrophenylphosphatase (TM1742) from Thermotoga maritima at 2.40 A resolution To be published 0 0 0 0 1S5E Cholera holotoxin, Crystal form 1 2004-01-20 2004-04-06 O'Neal, C.J.,Amaya, E.I.,Jobling, M.G.,Holmes, R.K.,Hol, W.G. Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism Biochemistry 2004 43 3772 3782 1S5F Cholera holotoxin, Crystal form 2 2004-01-20 2004-04-06 O'Neal, C.J.,Amaya, E.I.,Jobling, M.G.,Holmes, R.K.,Hol, W.G. Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism Biochemistry 2004 43 3772 3782 1UV7 PERIPLASMIC DOMAIN OF EPSM FROM VIBRIO CHOLERAE 2004-01-15 2004-04-23 Abendroth, J.,Rice, A.E.,McLuskey, K.,Bagdasarian, M.,Hol, W.G. The crystal structure of the periplasmic domain of the type II secretion system protein EpsM from Vibrio cholerae: the simplest version of the ferredoxin fold. J.Mol.Biol. 2004 338 585 596 1SJ4 Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution 2004-03-02 2004-05-18 Ke, A.,Zhou, K.,Ding, F.,Cate, J.H.,Doudna, J.A. A Conformational Switch controls hepatitis delta virus ribozyme catalysis Nature 2004 429 201 205 1SJF Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution 2004-03-03 2004-05-18 Ke, A.,Zhou, K.,Ding, F.,Cate, J.H.,Doudna, J.A. A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature 2004 429 201 205 1VBX Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution 2004-03-03 2004-05-18 Ke, A.,Zhou, K.,Ding, F.,Cate, J.H.D.,Doudna, J.A. A Conformational Switch controls hepatitis delta virus ribozyme catalysis NATURE 2004 429 201 205 1VC6 Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions 2004-03-04 2004-05-18 Ke, A.,Zhou, K.,Ding, F.,Cate, J.H.D.,Doudna, J.A. A Conformational Switch controls hepatitis delta virus ribozyme catalysis NATURE 2004 429 201 205 1TC5 Structural Analysis of a probable eukaryotic D-amino acid tRNA deacylase 2004-05-20 2004-06-08 Robien, M.A.,Hol, W.G.J.,Protozoa, Structural Genomics of Pathogenic Structural analysis of LMAJ005534AAA, a probable eukaryotic D-amino acid tRNA deacylase from Leishmania major To be Published 0 0 0 0 1VKI Crystal structure of a putative oligo-nucleotide binding protein from YbaK family (ATU3699) from Agrobacterium tumefaciens at 1.60 A resolution. 2004-05-24 2004-06-08 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (ATU3699) from Agrobacterium tumefaciens at 1.60 A resolution To be published 0 0 0 0 1SL5 Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504). 2004-03-05 2004-06-15 Guo, Y.,Feinberg, H.,Conroy, E.,Mitchell, D.A.,Alvarez, R.,Blixt, O.,Taylor, M.E.,Weis, W.I.,Drickamer, K. Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR Nat.Struct.Mol.Biol. 2004 11 591 598 1SL6 Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x. 2004-03-05 2004-06-15 Guo, Y.,Feinberg, H.,Conroy, E.,Mitchell, D.A.,Alvarez, R.,Blixt, O.,Taylor, M.E.,Weis, W.I.,Drickamer, K. Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR Nat.Struct.Mol.Biol. 2004 11 591 598 1SXJ Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) 2004-03-30 2004-06-22 Bowman, G.D.,O'Donnell, M.,Kuriyan, J. Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Nature 2004 429 724 730 1SXJ Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) 2004-03-30 2004-06-22 Bowman, G.D.,O'Donnell, M.,Kuriyan, J. Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Nature 2004 429 724 730 1VKM Crystal structure of an indigoidine synthase (IndA-like) protein (TM1464) from Thermotoga maritima at 1.90 A resolution 2004-06-09 2004-06-29 Levin, I.,Miller, M.D.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Ambing, E.,Biorac, T.,Cambell, J.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Karlak, C.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,Morse, A.,Moy, K.,Nigoghossian, E.,Ouyang, J.,Page, R.,Quijano, K.,Reyes, R.,Robb, A.,Sims, E.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,Wang, X.,West, B.,Wolf, G.,Xu, Q.,Zagnitko, O.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold. Proteins 2005 59 864 868 1RL3 Crystal structure of cAMP-free R1a subunit of PKA 2003-11-24 2004-07-06 Wu, J.,Brown, S.,Xuong, N.H.,Taylor, S.S. RIalpha subunit of PKA: a cAMP-free structure reveals a hydrophobic capping mechanism for docking cAMP into site B. Structure 2004 12 1057 1065 1T6U Nickel Superoxide Dismutase (NiSOD) Native 1.30 A Structure 2004-05-07 2004-07-13 Barondeau, D.P.,Kassmann, C.J.,Bruns, C.K.,Tainer, J.A.,Getzoff, E.D. Nickel superoxide dismutase structure and mechanism. Biochemistry 2004 43 8038 8047 1PPJ Bovine cytochrome bc1 complex with stigmatellin and antimycin 2003-06-16 2004-07-20 Huang, L.S.,Cobessi, D.,Tung, E.Y.,Berry, E.A. Binding of the Respiratory Chain Inhibitor Antimycin to the Mitochondrial bc(1) Complex: A New Crystal Structure Reveals an Altered Intramolecular Hydrogen-bonding Pattern. J.Mol.Biol. 2005 351 573 597 1TEX Mycobacterium smegmatis Stf0 Sulfotransferase with Trehalose 2004-05-25 2004-07-20 Mougous, J.D.,Petzold, C.J.,Senaratne, R.H.,Lee, D.H.,Akey, D.L.,Lin, F.L.,Munchel, S.E.,Pratt, M.R.,Riley, L.W.,Leary, J.A.,Berger, J.M.,Bertozzi, C.R. Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis. Nat.Struct.Mol.Biol. 2004 11 721 729 1SV0 Crystal Structure Of Yan-SAM/Mae-SAM Complex 2004-03-26 2004-07-27 Qiao, F.,Song, H.,Kim, C.A.,Sawaya, M.R.,Hunter, J.B.,Gingery, M.,Rebay, I.,Courey, A.J.,Bowie, J.U. Derepression by depolymerization; structural insights into the regulation of yan by mae. Cell (Cambridge,Mass.) 2004 118 163 173 1T0Q Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase 2004-04-12 2004-07-27 Sazinsky, M.H.,Bard, J.,Di Donato, A.,Lippard, S.J. Crystal Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase from Pseudomonas stutzeri OX1: INSIGHT INTO THE SUBSTRATE SPECIFICITY, SUBSTRATE CHANNELING, AND ACTIVE SITE TUNING OF MULTICOMPONENT MONOOXYGENASES. J.Biol.Chem. 2004 279 30600 30610 1T0R Crystal Structure of the Toluene/o-xylene Monooxygenase Hydroxuylase from Pseudomonas stutzeri-azide bound 2004-04-12 2004-07-27 Sazinsky, M.H.,Bard, J.,Di Donato, A.,Lippard, S.J. Crystal Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase from Pseudomonas stutzeri OX1: INSIGHT INTO THE SUBSTRATE SPECIFICITY, SUBSTRATE CHANNELING, AND ACTIVE SITE TUNING OF MULTICOMPONENT MONOOXYGENASES. J.Biol.Chem. 2004 279 30600 30610 1T0S Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase with 4-bromophenol bound 2004-04-12 2004-07-27 Sazinsky, M.H.,Bard, J.,Di Donato, A.,Lippard, S.J. Crystal Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase from Pseudomonas stutzeri OX1: INSIGHT INTO THE SUBSTRATE SPECIFICITY, SUBSTRATE CHANNELING, AND ACTIVE SITE TUNING OF MULTICOMPONENT MONOOXYGENASES. J.Biol.Chem. 2004 279 30600 30610 1S4Y Crystal structure of the activin/actrIIb extracellular domain 2004-01-19 2004-08-10 Greenwald, J.,Vega, M.E.,Allendorph, G.P.,Fischer, W.H.,Vale, W.,Choe, S. A Flexible Activin Explains the Membrane-Dependent Cooperative Assembly of TGF-beta Family Receptors. Mol.Cell 2004 15 485 489 1VKY Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution 2004-06-28 2004-08-17 Mathews, I.,Schwarzenbacher, R.,McMullan, D.,Abdubek, P.,Ambing, E.,Axelrod, H.,Biorac, T.,Canaves, J.M.,Chiu, H.J.,Deacon, A.M.,DiDonato, M.,Elsliger, M.A.,Godzik, A.,Grittini, C.,Grzechnik, S.K.,Hale, J.,Hampton, E.,Han, G.W.,Haugen, J.,Hornsby, M.,Jaroszewski, L.,Klock, H.E.,Koesema, E.,Kreusch, A.,Kuhn, P.,Lesley, S.A.,Levin, I.,Miller, M.D.,Moy, K.,Nigoghossian, E.,Ouyang, J.,Paulsen, J.,Quijano, K.,Reyes, R.,Spraggon, G.,Stevens, R.C.,van den Bedem, H.,Velasquez, J.,Vincent, J.,White, A.,Wolf, G.,Xu, Q.,Hodgson, K.O.,Wooley, J.,Wilson, I.A. Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 A resolution reveals a new fold. Proteins 2005 59 869 874 1TUE The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2 2004-06-24 2004-08-24 Abbate, E.A.,Berger, J.M.,Botchan, M.R. The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2 Genes Dev. 2004 18 1981 1996 1VLP Crystal structure of nicotinate phosphoribosyltransferase (yor209c) from Saccharomyces cerevisiae at 1.75 A resolution 2004-08-06 2004-08-24 Chappie, J.S.,Canaves, J.M.,Han, G.W.,Rife, C.L.,Xu, Q.,Stevens, R.C. The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases. Structure 2005 13 1385 1396 1U55 Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (oxygen complex) 2004-07-27 2004-08-31 Pellicena, P.,Karow, D.S.,Boon, E.M.,Marletta, M.A.,Kuriyan, J. Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases. 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Crystal Structure of an IdeR-DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions. J.Mol.Biol. 2004 342 1155 1169 1TN0 Structure of bacterorhodopsin mutant A51P 2004-06-11 2004-10-12 Yohannan, S.,Yang, D.,Faham, S.,Boulting, G.,Whitelegge, J.,Bowie, J.U. Proline substitutions are not easily accommodated in a membrane protein J.Mol.Biol. 2004 341 1 6 1U5V Structure of CitE complexed with triphosphate group of ATP form Mycobacterium tuberculosis 2004-07-28 2004-10-12 Goulding, C.W.,Lerkin, T.,Kim, C.Y.,Segelke, B.,Terwilliger, T.,Eisenberg, E. Crystal structure of Mycobacterium tuberculosis citrate lyase beta subunit and its unusual triphosphate binding site To be Published 0 0 0 0 1XDY Structural and Biochemical Identification of a Novel Bacterial Oxidoreductase, W-containing cofactor 2004-09-08 2004-10-12 Loschi, L.,Brokx, S.J.,Hills, T.L.,Zhang, G.,Bertero, M.G.,Lovering, A.L.,Weiner, J.H.,Strynadka, N.C. Structural and biochemical identification of a novel bacterial oxidoreductase. J.Biol.Chem. 2004 279 50391 50400 1XN4 PUTATIVE MAR1 RIBONUCLEASE FROM LEISHMANIA MAJOR 2004-10-04 2004-10-12 Caruthers, J.,Merritt, E.A.,Structural Genomics of Pathogenic Protozoa Consortium PUTATIVE MAR1 RIBONUCLEASE FROM LEISHMANIA MAJOR To be published 0 0 0 0 1TN5 Structure of bacterorhodopsin mutant K41P 2004-06-11 2004-10-19 Yohannan, S.,Yang, D.,Faham, S.,Boulting, G.,Whitelegge, J.,Bowie, J.U. Proline substitutions are not easily accommodated in a membrane protein J.Mol.Biol. 2004 341 1 6 1RCV Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV1 2003-11-04 2004-10-26 Pickens, J.C.,Mitchell, D.D.,Liu, J.,Tan, X.,Zhang, Z.,Verlinde, C.L.,Hol, W.G.,Fan, E. Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer. Chem.Biol. 2004 11 1205 1215 1RD9 Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV2 2003-11-05 2004-10-26 Pickens, J.C.,Mitchell, D.D.,Liu, J.,Tan, X.,Zhang, Z.,Verlinde, C.L.,Hol, W.G.,Fan, E. Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer. Chem.Biol. 2004 11 1205 1215 1RDP Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV3 2003-11-05 2004-10-26 Pickens, J.C.,Mitchell, D.D.,Liu, J.,Tan, X.,Zhang, Z.,Verlinde, C.L.,Hol, W.G.,Fan, E. Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer. Chem.Biol. 2004 11 1205 1215 1RF2 Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV4 2003-11-07 2004-10-26 Pickens, J.C.,Mitchell, D.D.,Liu, J.,Tan, X.,Zhang, Z.,Verlinde, C.L.,Hol, W.G.,Fan, E. Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer. Chem.Biol. 2004 11 1205 1215 1XD4 Crystal structure of the DH-PH-cat module of Son of Sevenless (SOS) 2004-09-03 2004-11-02 Sondermann, H.,Soisson, S.M.,Boykevisch, S.,Yang, S.S.,Bar-Sagi, D.,Kuriyan, J. Structural analysis of autoinhibition in the ras activator son of sevenless. Cell (Cambridge,Mass.) 2004 119 393 405 1X8W Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site 2004-08-18 2004-11-09 Guo, F.,Gooding, A.R.,Cech, T.R. Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol.Cell 2004 16 351 362 1XTP Structural Analysis of Leishmania major LMAJ004091AAA, a SAM-dependent methyltransferase of the DUF858/Pfam05891 family 2004-10-22 2004-11-09 Robien, M.A.,Hol, W.G.J.,Structural Genomics of Pathogenic Protozoa Consortium Structural Analysis of Leishmania major LMAJ004091AAA To be Published 0 0 0 0 1VOQ Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOR Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOS Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOU Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOV Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOW Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOX Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOY Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VOZ Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1VP0 Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains five 70s ribosomes and is described in remark 400. 2004-10-06 2004-11-16 Vila-Sanjurjo, A.,Schuwirth, B.S.,Hau, C.W.,Cate, J.H. Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol. 2004 11 1054 1059 1XAR Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck). 2004-08-26 2004-11-16 Feinberg, H.,Guo, Y.,Mitchell, D.A.,Drickamer, K.,Weis, W.I. Extended Neck Regions Stabilize Tetramers of the Receptors DC-SIGN and DC-SIGNR J.Biol.Chem. 2005 280 1327 1335 1XED Crystal Structure of a Ligand-Binding Domain of the Human Polymeric Ig Receptor, pIgR 2004-09-10 2004-11-23 Hamburger, A.E.,West Jr., A.P.,Bjorkman, P.J. Crystal Structure of a Polymeric Immunoglobulin Binding Fragment of the Human Polymeric Immunoglobulin Receptor Structure 2004 12 1925 1935 1XXH ATPgS Bound E. Coli Clamp Loader Complex 2004-11-05 2004-12-07 Kazmirski, S.L.,Podobnik, M.,Weitze, T.F.,O'donnell, M.,Kuriyan, J. Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex Proc.Natl.Acad.Sci.USA 2004 101 16750 16755 1XXI ADP Bound E. coli Clamp Loader Complex 2004-11-05 2004-12-07 Kazmirski, S.L.,Podobnik, M.,Weitze, T.F.,O'donnell, M.,Kuriyan, J. Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex Proc.Natl.Acad.Sci.USA 2004 101 16750 16755 1XJV Crystal structure of human POT1 bound to telomeric single-stranded DNA (TTAGGGTTAG) 2004-09-25 2004-12-14 Lei, M.,Podell, E.R.,Cech, T.R. Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection Nat.Struct.Mol.Biol. 2004 11 1223 1229 1XJV Crystal structure of human POT1 bound to telomeric single-stranded DNA (TTAGGGTTAG) 2004-09-25 2004-12-14 Lei, M.,Podell, E.R.,Cech, T.R. 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Mechanism of phosphorylation-dependent binding of APC to beta-catenin and its role in beta-catenin degradation. Mol.Cell 2004 15 511 521 1RKI Structure of pag5_736 from P. aerophilum with three disulphide bonds 2003-11-21 2005-01-18 Beeby, M.,Ryttersgaard, C.,Boutz, D.R.,Perry, L.J.,Yeates, T.O. The Genomics of Disulfide Bonding and Protein Stabilization in Thermophiles. Plos Biol. 2005 3 0 0 1VQU Crystal structure of Anthranilate phosphoribosyltransferase 2 (17130499) from Nostoc sp. at 1.85 A resolution 2005-01-05 2005-01-18 Joint Center for Structural Genomics (JCSG) Crystal structure of Anthranilate phosphoribosyltransferase 2 (17130499) from Nostoc sp. at 1.85 A resolution To be published 0 0 0 0 1WNH Crystal structure of mouse Latexin (tissue carboxypeptidase inhibitor) 2004-08-04 2005-02-15 Aagaard, A.,Listwan, P.,Cowieson, N.,Huber, T.,Ravasi, T.,Wells, C.A.,Flanagan, J.U.,Kellie, S.,Hume, D.A.,Kobe, B.,Martin, J.L. An Inflammatory Role for the Mammalian Carboxypeptidase Inhibitor Latexin: Relationship to Cystatins and the Tumor Suppressor TIG1 Structure 2005 13 309 317 1XIY Crystal Structure of Plasmodium falciparum antioxidant protein (1-Cys peroxiredoxin) 2004-09-22 2005-02-15 Sarma, G.N.,Nickel, C.,Rahlfs, S.,Fischer, M.,Becker, K.,Karplus, P.A. Crystal structure of a novel Plasmodium falciparum 1-Cys peroxiredoxin. J.Mol.Biol. 2005 346 1021 1034 1YF2 Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications 2004-12-30 2005-02-15 Kim, J.S.,Degiovanni, A.,Jancarik, J.,Adams, P.D.,Yokota, H.,Kim, R.,Kim, S.H. Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc.Natl.Acad.Sci.USA 2005 102 3248 3253 1Y5L The crystal structure of the NarGHI mutant NarI-H66Y 2004-12-02 2005-03-08 Bertero, M.G.,Rothery, R.A.,Boroumand, N.,Palak, M.,Blasco, F.,Ginet, N.,Weiner, J.H.,Strynadka, N.C.J. Structural and Biochemical Characterization of a Quinol Binding Site of Escherichia coli Nitrate Reductase A J.Biol.Chem. 2005 280 14836 14843 2BKL STRUCTURAL AND MECHANISTIC ANALYSIS OF TWO PROLYL ENDOPEPTIDASES: ROLE OF INTER-DOMAIN DYNAMICS IN CATALYSIS AND SPECIFICITY 2004-12-14 2005-03-09 Shan, L.,Mathews, I.I.,Khosla, C. Structural and mechanistic analysis of two prolyl endopeptidases: role of interdomain dynamics in catalysis and specificity. Proc.Natl.Acad.Sci.Usa 2005 102 3599 3604 1XM9 Structure of the armadillo repeat domain of plakophilin 1 2004-10-01 2005-03-22 Choi, H.J.,Weis, W.I. Structure of the armadillo repeat domain of plakophilin 1. J.Mol.Biol. 2005 346 367 376 1YVL Structure of Unphosphorylated STAT1 2005-02-16 2005-03-22 Mao, X.,Ren, Z.,Parker, G.N.,Sondermann, H.,Pastorello, M.A.,Wang, W.,McMurray, J.S.,Demeler, B.,Darnell, J.E.,Chen, X. Structural bases of unphosphorylated STAT1 association and receptor binding. Mol.Cell 2005 17 761 771 1YT5 Crystal structure of NAD kinase from Thermotoga maritima 2005-02-09 2005-04-05 Oganesyan, V.,Huang, C.,Adams, P.D.,Jancarik, J.,Yokota, H.A.,Kim, R.,Kim, S.H. Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution. Acta Crystallogr.,Sect.F 2005 61 640 646 1S3Q Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus 2004-01-13 2005-04-12 Johnson, E.,Cascio, D.,Sawaya, M.R.,Gingery, M.,Schroder, I. Crystal structures of a tetrahedral open pore ferritin from the hyperthermophilic archaeon Archaeoglobus fulgidus. Structure 2005 13 637 648 1SVD The structure of Halothiobacillus neapolitanus RuBisCo 2004-03-29 2005-04-12 Kerfeld, C.A.,Sawaya, M.R.,Pashkov, I.,Cannon, G.,Williams, E.,Tran, K.,Yeates, T.O. The structure of Halothiobacillus neapolitanus RuBisCo To be Published 0 0 0 0 1Z8F Guanylate Kinase Double Mutant A58C, T157C from Mycobacterium tuberculosis (Rv1389) 2005-03-30 2005-04-12 Chan, S.,Sawaya, M.R.,Choi, B.,Zocchi, G.,Perry, L.J. Crystal Structure of Guanylate Kinase from Mycobacterium tuberculosis (Rv1389) To be Published 0 0 0 0 1XJI Bacteriorhodopsin crystallized in bicelles at room temperature 2004-09-23 2005-04-19 Faham, S.,Boulting, G.L.,Massey, E.A.,Yohannan, S.,Yang, D.,Bowie, J.U. Crystallization of bacteriorhodopsin from bicelle formulations at room temperature Protein Sci. 2005 14 836 840 1Z0U Crystal structure of a NAD kinase from Archaeoglobus fulgidus bound by NADP 2005-03-02 2005-04-19 Liu, J.,Lou, Y.,Yokota, H.,Adams, P.D.,Kim, R.,Kim, S.H. 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Identification of an SH3-Binding Motif in a New Class of Methionine Aminopeptidases from Mycobacterium tuberculosis Suggests a Mode of Interaction with the Ribosome Biochemistry 2005 44 7166 7174 1Z6O Crystal Structure of Trichoplusia ni secreted ferritin 2005-03-22 2005-05-24 Hamburger, A.E.,West, A.P.,Hamburger, Z.A.,Hamburger, P.,Bjorkman, P.J. Crystal structure of a secreted insect ferritin reveals a symmetrical arrangement of heavy and light chains. J.Mol.Biol. 2005 349 558 569 1Z7B Crystal structure of E.coli ArnA dehydrogenase (decarboxylase) domain, R619E mutant 2005-03-24 2005-06-07 Gatzeva-Topalova, P.Z.,May, A.P.,Sousa, M.C. Structure and Mechanism of ArnA: Conformational Change Implies Ordered Dehydrogenase Mechanism in Key Enzyme for Polymyxin Resistance Structure 2005 13 929 942 1Z7E Crystal structure of full length ArnA 2005-03-24 2005-06-07 Gatzeva-Topalova, P.Z.,May, A.P.,Sousa, M.C. 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The Gemin6-Gemin7 Heterodimer from the Survival of Motor Neurons Complex Has an Sm Protein-like Structure. Structure 2005 13 883 892 1YUX Mixed valant state of nigerythrin 2005-02-14 2005-06-21 Iyer, R.B.,Silaghi-Dumitrescu, R.,Kurtz, D.M.,Lanzilotta, W.N. High-resolution crystal structures of Desulfovibrio vulgaris (Hildenborough) nigerythrin: facile, redox-dependent iron movement, domain interface variability, and peroxidase activity in the rubrerythrins. J.Biol.Inorg.Chem. 2005 10 407 416 1YUZ Partially Reduced State of Nigerythrin 2005-02-14 2005-06-21 Iyer, R.B.,Silaghi-Dumitrescu, R.,Kurtz, D.M.,Lanzilotta, W.N. High-resolution crystal structures of Desulfovibrio vulgaris (Hildenborough) nigerythrin: facile, redox-dependent iron movement, domain interface variability, and peroxidase activity in the rubrerythrins. J.Biol.Inorg.Chem. 2005 10 407 416 1ZUP Crystal structure of an RNaseH-like fold protein with unknown function (tm1739) from Thermotoga maritima at 2.20 A resolution 2005-05-31 2005-06-21 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (tm1739) from Thermotoga maritima at 2.20 A resolution To be published 0 0 0 0 2A03 Superoxide dismutase protein from plasmodium berghei 2005-06-15 2005-06-21 Holmes, M.A.,Merritt, E.A.,Structural Genomics of Pathogenic Protozoa Consortium (SGPP) Hypothetical protein from plasmodium berghei To be published 0 0 0 0 1Z5L Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D 2005-03-18 2005-07-19 Zajonc, D.M.,Cantu, C.,Mattner, J.,Zhou, D.,Savage, P.B.,Bendelac, A.,Wilson, I.A.,Teyton, L. Structure and function of a potent agonist for the semi-invariant natural killer T cell receptor. Nat.Immunol. 2005 6 810 818 1ZZO Structure of Mtb DsbF in its oxidized form. 2005-06-14 2005-07-26 Goulding, C.W.,Eisenberg, D.S.,Lekin, T.,Segelke, B.,Hung, L.W.,Yu, M.,Im, S. Structure of Mtb DsbF in its oxidized form. To be Published 0 0 0 0 2A65 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters 2005-07-01 2005-08-02 Yamashita, A.,Singh, S.K.,Kawate, T.,Jin, Y.,Gouaux, E. Crystal structure of a bacterial homologue of Na(+)/Cl(-)-dependent neurotransmitter transporters. Nature 2005 437 215 223 2A65 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters 2005-07-01 2005-08-02 Yamashita, A.,Singh, S.K.,Kawate, T.,Jin, Y.,Gouaux, E. Crystal structure of a bacterial homologue of Na(+)/Cl(-)-dependent neurotransmitter transporters. Nature 2005 437 215 223 2A9V Crystal structure of (np_394403.1) from THERMOPLASMA ACIDOPHILUM at 2.45 A resolution 2005-07-12 2005-08-02 Joint Center for Structural Genomics (JCSG) Crystal structure of (np_394403.1) from THERMOPLASMA ACIDOPHILUM at 2.45 A resolution To be published 0 0 0 0 1XHM The Crystal Structure of a Biologically Active Peptide (SIGK) Bound to a G Protein Beta:Gamma Heterodimer 2004-09-20 2005-08-09 Davis, T.L.,Bonacci, T.M.,Sprang, S.R.,Smrcka, A.V. Structural and Molecular Characterization of a Preferred Protein Interaction Surface on G Protein betagamma Subunits. Biochemistry 2005 44 10593 10604 1ZJR Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme 2005-04-30 2005-08-09 Pleshe, E.,Truesdell, J.,Batey, R.T. Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus. Acta Crystallogr.,Sect.F 2005 61 722 728 2A10 carboxysome shell protein ccmK4 2005-06-17 2005-08-09 Kerfeld, C.A.,Sawaya, M.R.,Tanaka, S.,Nguyen, C.V.,Phillips, M.,Beeby, M.,Yeates, T.O. Protein structures forming the shell of primitive bacterial organelles Science 2005 309 936 938 2A5D Structural basis for the activation of cholera toxin by human ARF6-GTP 2005-06-30 2005-08-16 O'Neal, C.J.,Jobling, M.G.,Holmes, R.K.,Hol, W.G. Structural basis for the activation of cholera toxin by human ARF6-GTP. Science 2005 309 1093 1096 2A5G Cholera toxin A1 subunit bound to ARF6(Q67L) 2005-06-30 2005-08-16 O'Neal, C.J.,Jobling, M.G.,Holmes, R.K.,Hol, W.G. Structural basis for the activation of cholera toxin by human ARF6-GTP. Science 2005 309 1093 1096 2A5X Crystal Structure of a Cross-linked Actin Dimer 2005-07-01 2005-08-23 Kudryashov, D.S.,Sawaya, M.R.,Adisetiyo, H.,Norcross, T.,Hegyi, G.,Reisler, E.,Yeates, T.O. The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin Proc.Natl.Acad.Sci.Usa 2005 102 13105 13110 1U35 Crystal structure of the nucleosome core particle containing the histone domain of macroH2A 2004-07-20 2005-09-27 Chakravarthy, S.,Gundimella, S.K.,Caron, C.,Perche, P.Y.,Pehrson, J.R.,Khochbin, S.,Luger, K. Structural characterization of the histone variant macroH2A. Mol.Cell.Biol. 2005 25 7616 7624 1T9T Structural Basis of Multidrug transport by the AcrB Multidrug Efflux Pump 2004-05-18 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 1T9U Structural Basis of Multidrug Transport by the AcrB Multidrug Efflux Pump 2004-05-18 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 1T9V Structural Basis of Multidrug Transport by the AcrB Multidrug Efflux Pump 2004-05-18 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 1T9W Structural Basis of Multidrug Transport by the AcrB Multidrug Efflux Pump 2004-05-18 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 1T9X Structural Basis of Multidrug Transport by the AcrB Multidrug Efflux Pump 2004-05-19 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 1T9Y Structural Basis of Multidrug Transport by the AcrB Multidrug Efflux Pump 2004-05-19 2005-10-04 Yu, E.W.,Aires, J.R.,McDermott, G.,Nikaido, H. A Periplasmic Drug-Binding Site of the AcrB Multidrug Efflux Pump: a Crystallographic and Site-Directed Mutagenesis Study J.Bacteriol. 2005 187 6804 6815 2B5O ferredoxin-NADP reductase 2005-09-29 2005-10-11 Sawaya, M.R.,Kerfeld, C.A.,Gomez-Lojero, C.,Krogmann, D.,Bryant, D.A.,Yeates, T.O. Crystal Structure of Ferredoxin-NADP reductase from Synechococcus sp. (PCC 7002) To be Published 0 0 0 0 1ZEV Crystal Structure of a Pathogenic RNA: CUG Repeats 2005-04-19 2005-10-25 Mooers, B.H.,Logue, J.S.,Berglund, J.A. The structural basis of myotonic dystrophy from the crystal structure of CUG repeats. Proc.Natl.Acad.Sci.Usa 2005 102 16626 16631 1Y2M Crystal structure of phenylalanine ammonia-lyase from yeast Rhododporidium toruloides 2004-11-22 2005-11-01 Wang, L.,Gamez, A.,Sarkissian, C.N.,Straub, M.,Patch, M.G.,Han, G.W.,Striepeke, S.,Fitzpatrick, P.,Scriver, C.R.,Stevens, R.C. Structure-based chemical modification strategy for enzyme replacement treatment of phenylketonuria. Mol.Genet.Metab. 2005 86 134 140 2B8M Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution 2005-10-07 2005-11-01 Joint Center for Structural Genomics (JCSG) Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution To be published 0 0 0 0 2ETD Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution 2005-10-27 2005-11-15 Joint Center for Structural Genomics (JCSG) Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution To be published 0 0 0 0 2B3H Crystal structure of Human Methionine Aminopeptidase Type I with a third cobalt in the active site 2005-09-20 2005-11-22 Addlagatta, A.,Hu, X.,Liu, J.O.,Matthews, B.W. Structural Basis for the Functional Differences between Type I and Type II Human Methionine Aminopeptidases(,). Biochemistry 2005 44 14741 14749 2B51 Structural Basis for UTP Specificity of RNA Editing TUTases from Trypanosoma Brucei 2005-09-27 2005-11-22 Deng, J.,Ernst, N.L.,Turley, S.,Stuart, K.D.,Hol, W.G. Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei. Embo J. 2005 24 4007 4017 2F2T Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.7 A resolution with 5-Aminoisoquinoline bound 2005-11-17 2005-11-22 Bosch, J.,Robien, M.A.,Mehlin, C.,Boni, E.,Riechers, A.,Buckner, F.S.,Van Voorhis, W.C.,Myler, P.J.,Worthey, E.A.,DeTitta, G.,Luft, J.R.,Lauricella, A.,Gulde, S.,Anderson, L.A.,Kalyuzhniy, O.,Neely, H.M.,Ross, J.,Earnest, T.N.,Soltis, M.,Schoenfeld, L.,Zucker, F.,Merritt, E.A.,Fan, E.,Verlinde, C.L.,Hol, W.G.J. Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase. J.Med.Chem. 2006 49 5939 5946 2B56 Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei 2005-09-27 2005-11-22 Deng, J.,Ernst, N.L.,Turley, S.,Stuart, K.D.,Hol, W.G. Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei. Embo J. 2005 24 4007 4017 1ZX4 Structure of ParB bound to DNA 2005-06-06 2005-11-29 Schumacher, M.A.,Funnell, B.E. Structures of ParB bound to DNA reveal mechanism of partition complex formation. Nature 2005 438 516 519 1ZZS Bovine eNOS N368D single mutant with L-N(omega)-Nitroarginine-(4R)-Amino-L-Proline Amide Bound 2005-06-14 2005-12-06 Li, H.,Flinspach, M.L.,Igarashi, J.,Jamal, J.,Yang, W.,Litzinger, E.A.,Huang, H.,Erdal, E.P.,Silverman, R.B.,Poulos, T.L. Exploring the Binding Conformations of Bulkier Dipeptide Amide Inhibitors in Constitutive Nitric Oxide Synthases. Biochemistry 2005 44 15222 15229 2F62 Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.5 A resolution with (2-ETHYLPHENYL)METHANOL bound 2005-11-28 2005-12-06 Bosch, J.,Robien, M.A.,Mehlin, C.,Boni, E.,Riechers, A.,Buckner, F.S.,Van Voorhis, W.C.,Myler, P.J.,Worthey, E.A.,DeTitta, G.,Luft, J.R.,Lauricella, A.,Gulde, S.,Anderson, L.A.,Kalyuzhniy, O.,Neely, H.M.,Ross, J.,Earnest, T.N.,Soltis, M.,Schoenfeld, L.,Zucker, F.,Merritt, E.A.,Fan, E.,Verlinde, C.L.,Hol, W.G.J. Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase. J.Med.Chem. 2006 49 5939 5946 2F67 Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.6 A resolution with BENZO[CD]INDOL-2(1H)-ONE bound 2005-11-28 2005-12-06 Bosch, J.,Robien, M.A.,Mehlin, C.,Boni, E.,Riechers, A.,Buckner, F.S.,Van Voorhis, W.C.,Myler, P.J.,Worthey, E.A.,DeTitta, G.,Luft, J.R.,Lauricella, A.,Gulde, S.,Anderson, L.A.,Kalyuzhniy, O.,Neely, H.M.,Ross, J.,Earnest, T.N.,Soltis, M.,Schoenfeld, L.,Zucker, F.,Merritt, E.A.,Fan, E.,Verlinde, C.L.,Hol, W.G.J. Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase. J.Med.Chem. 2006 49 5939 5946 2AVU Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription 2005-08-30 2005-12-13 Wang, S.,Fleming, R.T.,Westbrook, E.M.,Matsumura, P.,McKay, D.B. Structure of the Escherichia coli FlhDC Complex, a Prokaryotic Heteromeric Regulator of Transcription. J.Mol.Biol. 2006 355 798 808 2BDW Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II 2005-10-20 2005-12-13 Rosenberg, O.S.,Deindl, S.,Sung, R.-J.,Nairn, A.C.,Kuriyan, J. Structure of the Autoinhibited Kinase Domain of CaMKII and SAXS Analysis of the Holoenzyme Cell (Cambridge,Mass.) 2005 123 849 860 2FBW Avian respiratory complex II with carboxin bound 2005-12-10 2005-12-20 Huang, L.S.,Sun, G.,Cobessi, D.,Wang, A.C.,Shen, J.T.,Tung, E.Y.,Anderson, V.E.,Berry, E.A. 3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme. J.Biol.Chem. 2006 281 5965 5972 2AUC Structure of the Plasmodium MTIP-MyoA complex, a key component of the parasite invasion motor 2005-08-27 2006-01-17 Bosch, J.,Turley, S.,Daly, T.M.,Bogh, S.M.,Villasmil, M.L.,Roach, C.,Zhou, N.,Morrisey, J.M.,Vaidya, A.B.,Bergman, L.W.,Hol, W.G. Structure of the MTIP-MyoA complex, a key component of the malaria parasite invasion motor. Proc.Natl.Acad.Sci.Usa 2006 103 4852 4857 2FGY Beta Carbonic Anhydrase from the Carboxysomal Shell of Halothiobacillus neapolitanus (CsoSCA) 2005-12-22 2006-01-17 Sawaya, M.R.,Cannon, G.C.,Heinhorst, S.,Tanaka, S.,Williams, E.B.,Yeates, T.O.,Kerfeld, C.A. The Structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two. J.Biol.Chem. 2006 281 7546 7555 1ZLJ Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain 2005-05-06 2006-01-31 Wisedchaisri, G.,Wu, M.,Rice, A.E.,Roberts, D.M.,Sherman, D.R.,Hol, W.G.J. Structures of Mycobacterium tuberculosis DosR and DosR-DNA complex involved in gene activation during adaptation to hypoxic latency. J.Mol.Biol. 2005 354 630 641 2ANV crystal structure of P22 lysozyme mutant L86M 2005-08-11 2006-02-07 Mooers, B.H.,Matthews, B.W. Extension to 2268 atoms of direct methods in the ab initio determination of the unknown structure of bacteriophage P22 lysozyme. Acta Crystallogr.,Sect.D 2006 62 165 176 2ANX crystal structure of bacteriophage P22 lysozyme mutant L87M 2005-08-11 2006-02-07 Mooers, B.H.,Matthews, B.W. Extension to 2268 atoms of direct methods in the ab initio determination of the unknown structure of bacteriophage P22 lysozyme. Acta Crystallogr.,Sect.D 2006 62 165 176 2F3N Crystal Structure of the native Shank SAM domain. 2005-11-22 2006-02-07 Baron, M.K.,Boeckers, T.M.,Vaida, B.,Faham, S.,Gingery, M.,Sawaya, M.R.,Salyer, D.,Gundelfinger, E.D.,Bowie, J.U. An architectural framework that may lie at the core of the postsynaptic density. Science 2006 311 531 535 2F44 Crystal Structure of the Zinc-bound Shank SAM domain 2005-11-22 2006-02-07 Baron, M.K.,Boeckers, T.M.,Vaida, B.,Faham, S.,Gingery, M.,Sawaya, M.R.,Salyer, D.,Gundelfinger, E.D.,Bowie, J.U. An architectural framework that may lie at the core of the postsynaptic density. Science 2006 311 531 535 2F86 The Association Domain of C. elegans CaMKII 2005-12-01 2006-02-07 Rosenberg, O.S.,Deindl, S.,Comolli, L.R.,Hoelz, A.,Downing, K.H.,Nairn, A.C.,Kuriyan, J. Oligomerization states of the association domain and the holoenyzme of Ca2+/CaM kinase II. Febs J. 2006 273 682 694 2FTZ Crystal structure of Geranyltranstransferase (EC 2.5.1.10) (tm0161) from THERMOTOGA MARITIMA at 1.90 A resolution 2006-01-25 2006-02-07 Joint Center for Structural Genomics (JCSG) Crystal structure of Geranyltranstransferase (EC 2.5.1.10) (tm0161) from THERMOTOGA MARITIMA at 1.90 A resolution To be published 0 0 0 0 2AK1 Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with benzoic acid 2005-08-02 2006-02-14 Zhu, X.,Dickerson, T.J.,Rogers, C.J.,Kaufmann, G.F.,Mee, J.M.,McKenzie, K.M.,Janda, K.D.,Wilson, I.A. Complete reaction cycle of a cocaine catalytic antibody at atomic resolution. Structure 2006 14 205 216 2F2H Structure of the YicI thiosugar Michaelis complex 2005-11-16 2006-02-28 Kim, Y.-W.,Lovering, A.L.,Chen, H.,Kantner, T.,McIntosh, L.P.,Strynadka, N.C.J.,Withers, S.G. Expanding the Thioglycoligase Strategy to the Synthesis of alpha-linked Thioglycosides Allows Structural Investigation of the Parent Enzyme/Substrate Complex J.Am.Chem.Soc. 2006 128 2202 2203 2FUP Crystal structure of a putative flagella synthesis protein flgN (NP_252042.1) from Pseudomonas aeruginosa at 1.48 A resolution. 2006-01-27 2006-02-28 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (NP_252042.1) from Pseudomonas aeruginosa at 1.48 A resolution To be published 0 0 0 0 2FUR Crystal structure of an FMN-binding split barrel fold protein with unknown function (10649715) from Thermoplasma acidophilum at 1.80 A resolution. 2006-01-27 2006-02-28 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein 10640715 from Thermoplasma acidophilum at 1.80 A resolution To be published 0 0 0 0 2BA2 Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae 2005-10-13 2006-03-07 Shin, D.H.,Kim, J.-S.,Yokota, H.,Kim, R.,Kim, S.-H. Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae. Protein Sci. 2006 15 921 928 2G0W Crystal structure of Lmo2234 protein (16411704) from Listeria monocytogenes LI2 at 1.70 A resolution 2006-02-13 2006-03-07 Joint Center for Structural Genomics (JCSG) Crystal structure of Lmo2234 protein (16411704) from Listeria monocytogenes LI2 at 1.70 A resolution To be published 0 0 0 0 2G38 A PE/PPE Protein Complex from Mycobacterium tuberculosis 2006-02-17 2006-03-14 Strong, M.,Sawaya, M.R.,Wang, S.,Phillips, M.,Cascio, D.,Eisenberg, D. Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.Usa 2006 103 8060 8065 2G38 A PE/PPE Protein Complex from Mycobacterium tuberculosis 2006-02-17 2006-03-14 Strong, M.,Sawaya, M.R.,Wang, S.,Phillips, M.,Cascio, D.,Eisenberg, D. Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.Usa 2006 103 8060 8065 2FO0 Organization of the SH3-SH2 Unit in Active and Inactive Forms of the c-Abl Tyrosine Kinase 2006-01-12 2006-03-21 Nagar, B.,Hantschel, O.,Seeliger, M.,Davies, J.M.,Weis, W.I.,Superti-Furga, G.,Kuriyan, J. Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase. Mol.Cell 2006 21 787 798 2FZT Crystal structure of a protein with unknown function (tm0693) from Thermotoga maritima at 2.05 A resolution 2006-02-10 2006-03-21 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (tm0693) from THERMOTOGA MARITIMA at 2.05 A resolution To be published 0 0 0 0 2G8L Crystal structure of a protein of unknown function from DUF180 family (3258004) from Pyrococcus horikoshii at 2.04 A resolution. 2006-03-02 2006-03-21 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (3258004) from Pyrococcus horikoshii at 2.04 A resolution To be published 0 0 0 0 2ESS Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution 2005-10-26 2006-03-28 Joint Center for Structural Genomics (JCSG) Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution To be published 0 0 0 0 2G36 Crystal structure of Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan-tRNA ligase)(TrpRS) (tm0492) from THERMOTOGA MARITIMA at 2.50 A resolution 2006-02-17 2006-03-28 Joint Center for Structural Genomics (JCSG) Crystal structure of Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan-tRNA ligase)(TrpRS) (tm0492) from THERMOTOGA MARITIMA at 2.50 A resolution To be published 0 0 0 0 2GB5 Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution 2006-03-09 2006-03-28 Joint Center for Structural Genomics (JCSG) Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution To be published 0 0 0 0 2B4H Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Dimer 2005-09-24 2006-04-18 Yoder, J.D.,Dormitzer, P.R. Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement Embo J. 2006 25 1559 1568 2B4I Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Trimer 2005-09-24 2006-04-18 Yoder, J.D.,Dormitzer, P.R. Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement Embo J. 2006 25 1559 1568 2F32 Xray crystal structure of lysozyme mutant L20/R63A liganded to ethylguanidinium 2005-11-18 2006-04-25 Yousef, M.S.,Bischoff, N.,Dyer, C.M.,Baase, W.A.,Matthews, B.W. Guanidinium derivatives bind preferentially and trigger long-distance conformational changes in an engineered T4 lysozyme. Protein Sci. 2006 15 853 861 2F47 Xray crystal structure of T4 lysozyme mutant L20/R63A liganded to methylguanidinium 2005-11-22 2006-04-25 Yousef, M.S.,Bischoff, N.,Dyer, C.M.,Baase, W.A.,Matthews, B.W. Guanidinium derivatives bind preferentially and trigger long-distance conformational changes in an engineered T4 lysozyme. Protein Sci. 2006 15 853 861 2FK0 Crystal Structure of a H5N1 influenza virus hemagglutinin. 2006-01-03 2006-05-02 Stevens, J.,Blixt, O.,Tumpey, T.M.,Taubenberger, J.K.,Paulson, J.C.,Wilson, I.A. Structure and Receptor Specificity of the Hemagglutinin from an H5N1 Influenza Virus. Science 2006 312 404 410 2GEW Atomic resolution structure of cholesterol oxidase @ pH 9.0 (Streptomyces sp. SA-COO) 2006-03-20 2006-05-02 Lyubimov, A.Y.,Lario, P.I.,Moustafa, I.,Vrielink, A. Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment. Nat.Chem.Biol. 2006 2 259 264 2GFG Crystal structure of protein BH2851 (10175472) from Bacillus halodurans at 2.12 A resolution 2006-03-21 2006-05-02 Joint Center for Structural Genomics (JCSG) Crystal structure of the protein BH2851 (10175472) from Bacillus halodurans at 2.12 A resolution To be published 0 0 0 0 2G2H A Src-like Inactive Conformation in the Abl Tyrosine Kinase Domain 2006-02-16 2006-05-23 Levinson, N.M.,Kuchment, O.,Shen, K.,Young, M.A.,Koldobskiy, M.,Karplus, M.,Cole, P.A.,Kuriyan, J. A SRC-like inactive conformation in the abl tyrosine kinase domain. Plos Biol. 2006 4 753 767 2GZ5 Human Type 1 methionine aminopeptidase in complex with ovalicin at 1.1 Ang 2006-05-10 2006-05-23 Addlagatta, A.,Matthews, B.W. Structure of the angiogenesis inhibitor ovalicin bound to its noncognate target, human Type 1 methionine aminopeptidase. Protein Sci. 2006 15 1842 1848 2GZQ Phosphatidylethanolamine-binding protein from Plasmodium vivax 2006-05-11 2006-05-23 Arakaki, T.,Neely, H.,Boni, E.,Mueller, N.,Buckner, F.S.,Van Voorhis, W.C.,Lauricella, A.,DeTitta, G.,Luft, J.,Hol, W.G.,Merritt, E.A. The structure of Plasmodium vivax phosphatidylethanolamine-binding protein suggests a functional motif containing a left-handed helix Acta Crystallogr Sect F Struct 2007 63 178 182 2GK1 X-ray crystal structure of NGT-bound HexA 2006-03-31 2006-05-30 Lemieux, M.J.,Mark, B.L.,Cherney, M.M.,Withers, S.G.,Mahuran, D.J.,James, M.N. Crystallographic Structure of Human beta-Hexosaminidase A: Interpretation of Tay-Sachs Mutations and Loss of G(M2) Ganglioside Hydrolysis. J.Mol.Biol. 2006 359 913 929 2DPK The Crystal Structure of the Primary Ca2+ Sensor of the Na+/Ca2+ Exchanger 2006-05-12 2006-06-13 Nicoll, D.A.,Sawaya, M.,Kwon, S.,Cascio, D.,Philipson, K.D.,Abramson, J. 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J.Mol.Biol. 2006 360 1 6 2H56 Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution 2006-05-25 2006-07-25 Joint Center for Structural Genomics (JCSG) Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution To be published 0 0 0 0 2GSO Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate 2006-04-26 2006-08-01 Zalatan, J.G.,Fenn, T.D.,Brunger, A.T.,Herschlag, D. Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution Biochemistry 2006 45 9788 9803 2GSU Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with AMP 2006-04-26 2006-08-01 Zalatan, J.G.,Fenn, T.D.,Brunger, A.T.,Herschlag, D. Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution Biochemistry 2006 45 9788 9803 2H7G Structure of variola topoisomerase non-covalently bound to DNA 2006-06-02 2006-08-15 Perry, K.,Hwang, Y.,Bushman, F.D.,Van Duyne, G.D. Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell 2006 23 343 354 2HPO Structure of Aminopeptidase N from E. coli Suggests a Compartmentalized, Gated Active Site 2006-07-17 2006-08-15 Addlagatta, A.,Gay, L.,Matthews, B.W. Structure of aminopeptidase N from Escherichia coli suggests a compartmentalized, gated active site. Proc.Natl.Acad.Sci.Usa 2006 103 13339 13344 2AW9 Superoxide dismutase with manganese from Deinococcus radiodurans 2005-08-31 2006-08-22 Tanaka, S.,Sawaya, M.R.,Chan, S.,Perry, L.J. Crystal structure of manganese superoxide dismutase from Deinococcus radiodurans To be Published 0 0 0 0 2H5O Crystal structure of mOrange 2006-05-26 2006-08-22 Shu, X.,Shaner, N.C.,Yarbrough, C.A.,Tsien, R.Y.,Remington, S.J. Novel Chromophores and Buried Charges Control Color in mFruits Biochemistry 2006 45 9639 9647 2H5P Crystal structure of mStrawberry at pH 9.5 2006-05-26 2006-08-22 Shu, X.,Shaner, N.C.,Yarbrough, C.A.,Tsien, R.Y.,Remington, S.J. Novel Chromophores and Buried Charges Control Color in mFruits Biochemistry 2006 45 9639 9647 2H5R Crystal structure of mStrawberry at pH 10.5 2006-05-26 2006-08-22 Shu, X.,Shaner, N.C.,Yarbrough, C.A.,Tsien, R.Y.,Remington, S.J. Novel Chromophores and Buried Charges Control Color in mFruits Biochemistry 2006 45 9639 9647 2GMI Mms2/Ubc13~Ubiquitin 2006-04-06 2006-09-19 Eddins, M.J.,Carlile, C.M.,Gomez, K.M.,Pickart, C.M.,Wolberger, C. Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation. Nat.Struct.Mol.Biol. 2006 13 915 920 2HOM Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate 2006-07-14 2006-09-19 Edwards, T.E.,Ferre-D'Amare, A.R. Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure 2006 14 1459 1468 2FJ7 Crystal structure of Nucleosome Core Particle Containing a Poly (dA.dT) Sequence Element 2005-12-31 2006-09-26 Bao, Y.,White, C.L.,Luger, K. Nucleosome Core Particles Containing a Poly(dA.dT) Sequence Element Exhibit a Locally Distorted DNA Structure. J.Mol.Biol. 2006 361 617 624 2H5D 0.9A resolution crystal structure of alpha-lytic protease complexed with a transition state analogue, MeOSuc-Ala-Ala-Pro-Val boronic acid 2006-05-25 2006-09-26 Fuhrmann, C.N.,Daugherty, M.D.,Agard, D.A. Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis J.Am.Chem.Soc. 2006 128 9086 9102 2HYE Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex 2006-08-05 2006-10-03 Angers, S.,Li, T.,Yi, X.,MacCoss, M.J.,Moon, R.T.,Zheng, N. Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature 2006 443 590 593 2I15 Crystal structure of MPN423 from Mycoplasma pneumoniae 2006-08-12 2006-10-10 Shin, D.H.,Yokota, H.,Kim, R.,Kim, S.-H. Crystal structure of MPN423 from Mycoplasma pneumoniae To be Published 0 0 0 0 2IAY Crystal structure of a protein with unknown function from Lactobacillus plantarum at 1.20 A resolution 2006-09-08 2006-10-10 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (NP_785678.1) from Lactobacillus Plantarum at 1.20 A resolution To be published 0 0 0 0 2HUL Crystal structure of T4 Lysozyme S44C synthetic dimer 2006-07-26 2006-10-17 Banatao, D.R.,Cascio, D.,Crowley, C.S.,Fleissner, M.R.,Tienson, H.L.,Yeates, T.O. An approach to crystallizing proteins by synthetic symmetrization. Proc.Natl.Acad.Sci.Usa 2006 103 16230 16235 2HUM Crystal structure of T4 Lysozyme D72C synthetic dimer 2006-07-26 2006-10-17 Banatao, D.R.,Cascio, D.,Crowley, C.S.,Fleissner, M.R.,Tienson, H.L.,Yeates, T.O. An approach to crystallizing proteins by synthetic symmetrization. Proc.Natl.Acad.Sci.Usa 2006 103 16230 16235 2INB Crystal structure of an XisH family protein (ZP_00107633.1) from Nostoc punctiforme PCC 73102 at 1.60 A resolution 2006-10-06 2006-10-24 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (ZP_00107633.1) from Nostoc punctiforme PCC 73102 at 1.60 A resolution To be published 0 0 0 0 2II0 Crystal Structure of catalytic domain of Son of sevenless (Rem-Cdc25) in the absence of Ras 2006-09-27 2006-10-31 Freedman, T.S.,Sondermann, H.,Friedland, G.D.,Kortemme, T.,Bar-Sagi, D.,Marqusee, S.,Kuriyan, J. A Ras-induced conformational switch in the Ras activator Son of sevenless. Proc.Natl.Acad.Sci.Usa 2006 103 16692 16697 2ISE Botulinum Neurotoxin A Light Chain WT Crystal Form A 2006-10-17 2006-11-07 Burnett, J.C.,Ruthel, G.,Stegmann, C.M.,Panchal, R.G.,Nguyen, T.L.,Hermone, A.R.,Stafford, R.G.,Lane, D.J.,Kenny, T.A.,McGrath, C.F.,Wipf, P.,Stahl, A.M.,Schmidt, J.J.,Gussio, R.,Brunger, A.T.,Bavari, S. Inhibition of metalloprotease botulinum serotype A from a pseudo-peptide binding mode to a small molecule that is active in primary neurons. J.Biol.Chem. 2007 282 5004 5014 2ITB Crystal structure of putative tRNA-(ms(2)io(6)a)-hydroxylase (NP_744337.1) from Pseudomonas Putida KT2440 at 2.05 A resolution 2006-10-19 2006-11-07 Joint Center for Structural Genomics (JCSG) Crystal structure of putative tRNA-(ms(2)io(6)a)-hydroxylase (NP_744337.1) from Pseudomonas Putida KT2440 at 2.05 A resolution To be published 0 0 0 0 2EWH Carboxysome protein CsoS1A from Halothiobacillus neapolitanus 2005-11-03 2006-11-14 Tsai, Y.,Sawaya, M.R.,Cannon, G.C.,Cai, F.,Williams, E.B.,Heinhorst, S.,Kerfeld, C.A.,Yeates, T.O. Structural Analysis of CsoS1A and the Protein Shell of the Halothiobacillus neapolitanus Carboxysome. Plos Biol. 2007 5 0 0 2G9C Modified pyrimidines Specifically bind the purine riboswitch 2006-03-06 2006-11-21 Gilbert, S.D.,Mediatore, S.J.,Batey, R.T. Modified pyrimidines specifically bind the purine riboswitch. J.Am.Chem.Soc. 2006 128 14214 14215 2IOP Crystal Structure of Full-length HtpG, the Escherichia coli Hsp90, Bound to ADP 2006-10-10 2006-11-21 Shiau, A.K.,Harris, S.F.,Southworth, D.R.,Agard, D.A. Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements. Cell 2006 127 329 340 2IOQ Crystal Structure of full-length HTPG, the Escherichia coli HSP90 2006-10-10 2006-11-21 Shiau, A.K.,Harris, S.F.,Southworth, D.R.,Agard, D.A. Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements. Cell 2006 127 329 340 2NQ6 Crystal structure of human methionine aminopeptidase type 1 in complex with 3-tert-Butoxycarbonylaminopyridine-2-carboxylic acid thiazole-2-ylamide 2006-10-30 2006-11-21 Hu, X.,Addlagatta, A.,Lu, J.,Matthews, B.W.,Liu, J.O. Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proc.Natl.Acad.Sci.Usa 2006 103 18148 18153 2NQ7 Crystal structure of type 1 human methionine aminopeptidase in complex with 3-(2,2-Dimethylpropionylamino)pyridine-2-carboxylic acid thiazole-2-ylamide 2006-10-30 2006-11-21 Hu, X.,Addlagatta, A.,Lu, J.,Matthews, B.W.,Liu, J.O. Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proc.Natl.Acad.Sci.Usa 2006 103 18148 18153 2NWV Crystal structure of XisI protein-like (YP_323822.1) from Anabaena Variabilis ATCC 29413 at 1.85 A resolution 2006-11-16 2006-11-28 Joint Center for Structural Genomics (JCSG) Crystal structure of XisI protein-like (YP_323822.1) from Anabaena Variabilis ATCC 29413 at 1.85 A resolution To be published 0 0 0 0 2IT9 Crystal structure of a protein with unknown function from DUF155 family (YP_292156.1) from Prochlorococcus sp. NATL2A at 1.80 A resolution 2006-10-19 2006-11-28 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (YP_292156.1) from Prochlorococcus sp. NATL2A at 1.80 A resolution To be published 0 0 0 0 2NLV Crystal structure of XisI protein-like (YP_324325.1) from Anabaena Variabilis ATCC 29413 at 1.30 A resolution 2006-10-20 2006-12-05 Joint Center for Structural Genomics (JCSG) Crystal structure of XisI protein-like (YP_324325.1) from Anabaena Variabilis ATCC 29413 at 1.30 A resolution To be published 0 0 0 0 2II1 Crystal structure of Acetamidase (10172637) from Bacillus Halodurans at 1.95 A resolution 2006-09-27 2006-12-05 Joint Center for Structural Genomics (Jcsg) Crystal Structure of Acetamidase (10172637) from Bacillus Halodurans at 1.95 A Resolution To be Published 0 0 0 0 2GHT CTD-specific phosphatase Scp1 in complex with peptide from C-terminal domain of RNA polymerase II 2006-03-27 2006-12-05 Zhang, Y.,Kim, Y.,Genoud, N.,Gao, J.,Kelly, J.W.,Pfaff, S.L.,Gill, G.N.,Dixon, J.E.,Noel, J.P. Determinants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1. Mol.Cell 2006 24 759 770 2GHQ CTD-specific phosphatase Scp1 in complex with peptide C-terminal domain of RNA polymerase II 2006-03-27 2006-12-05 Zhang, Y.,Kim, Y.,Genoud, N.,Gao, J.,Kelly, J.W.,Pfaff, S.L.,Gill, G.N.,Dixon, J.E.,Noel, J.P. Determinants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1. Mol.Cell 2006 24 759 770 2NVM Crystal structure of fdxN element excision controlling factor XisI (YP_321976.1) from Anabaena Variabilis ATCC 29413 at 2.19 A resolution 2006-11-13 2006-12-12 Joint Center for Structural Genomics (JCSG) Crystal structure of fdxN element excision controlling factor XisI (YP_321976.1) from Anabaena Variabilis ATCC 29413 at 2.19 A resolution To be published 0 0 0 0 2HJV Structure of the second domain (residues 207-368) of the Bacillus subtilis YxiN protein 2006-07-02 2006-12-12 Caruthers, J.M.,Hu, Y.,McKay, D.B. Structure of the second domain of the Bacillus subtilis DEAD-box RNA helicase YxiN. Acta Crystallogr.,Sect.F 2006 62 1191 1195 2NYH Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution 2006-11-20 2006-12-12 Joint Center for Structural Genomics (JCSG) Crystal structure of putative Dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution To be published 0 0 0 0 2NM1 Structure of BoNT/B in complex with its protein receptor 2006-10-20 2006-12-19 Jin, R.,Rummel, A.,Binz, T.,Brunger, A.T. Botulinum neurotoxin B recognizes its protein receptor with high affinity and specificity. Nature 2006 444 1092 1095 2O2Z Crystal structure of a protein of unknown function from UPF0052 family (NP_244435.1) from Bacillus halodurans at 2.60 A resolution 2006-11-30 2006-12-19 Joint Center for Structural Genomics (JCSG) Crystal structure of hypothetical protein (NP_244435.1) from Bacillus halodurans at 2.60 A resolution To be published 0 0 0 0 2O4V An arginine ladder in OprP mediates phosphate specific transfer across the outer membrane 2006-12-05 2006-12-26 Moraes, T.F.,Bains, M.,Hancock, R.E.,Strynadka, N.C. An arginine ladder in OprP mediates phosphate-specific transfer across the outer membrane. Nat.Struct.Mol.Biol. 2007 14 85 87 2O4V An arginine ladder in OprP mediates phosphate specific transfer across the outer membrane 2006-12-05 2006-12-26 Moraes, T.F.,Bains, M.,Hancock, R.E.,Strynadka, N.C. An arginine ladder in OprP mediates phosphate-specific transfer across the outer membrane. Nat.Struct.Mol.Biol. 2007 14 85 87 2IGP Crystal Structure of Hec1 CH domain 2006-09-22 2007-01-02 Wei, R.R.,Al-Bassam, J.,Harrison, S.C. The Ndc80/HEC1 complex is a contact point for kinetochore-microtubule attachment. Nat.Struct.Mol.Biol. 2007 14 54 59 2I3S Bub3 complex with Bub1 GLEBS motif 2006-08-20 2007-01-09 Larsen, N.A.,Al-Bassam, J.,Wei, R.R.,Harrison, S.C. Structural analysis of Bub3 interactions in the mitotic spindle checkpoint. Proc.Natl.Acad.Sci.Usa 2007 104 1201 1206 2I3T Bub3 complex with Mad3 (BubR1) GLEBS motif 2006-08-20 2007-01-09 Larsen, N.A.,Al-Bassam, J.,Wei, R.R.,Harrison, S.C. Structural analysis of Bub3 interactions in the mitotic spindle checkpoint. Proc.Natl.Acad.Sci.Usa 2007 104 1201 1206 2O6Y Tyrosine ammonia-lyase from Rhodobacter sphaeroides 2006-12-09 2007-01-16 Louie, G.V.,Bowman, M.E.,Moffitt, M.C.,Baiga, T.J.,Moore, B.S.,Noel, J.P. Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases. Chem.Biol. 2006 13 1327 1338 2OBL Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria 2006-12-19 2007-01-30 Zarivach, R.,Vuckovic, M.,Deng, W.,Finlay, B.B.,Strynadka, N.C. Structural analysis of a prototypical ATPase from the type III secretion system. Nat.Struct.Mol.Biol. 2007 14 131 137 2OL9 Peptide corresponding to residues 170-175 of human prion 2007-01-18 2007-01-30 Sawaya, M.R.,Sambashivan, S.,Nelson, R.,Ivanova, M.I.,Sievers, S.A.,Apostol, M.I.,Thompson, M.J.,Balbirnie, M.,Wiltzius, J.J.,McFarlane, H.T.,Madsen, A.O.,Riekel, C.,Eisenberg, D. Atomic structures of amyloid cross-beta spines reveal varied steric zippers. Nature 2007 447 453 457 2GK0 Structure of Catalytic Elimination Antibody 13G5 from a twinned crystal in space group C2 2006-03-31 2007-02-06 Muller, R.,Debler, E.W.,Steinmann, M.,Seebeck, F.P.,Wilson, I.A.,Hilvert, D. Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc. 2007 129 460 461 2IEF Structure of the cooperative Excisionase (Xis)-DNA complex reveals a micronucleoprotein filament 2006-09-18 2007-02-06 Abbani, M.A.,Papagiannis, C.V.,Sam, M.D.,Cascio, D.,Johnson, R.C.,Clubb, R.T. Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proc.Natl.Acad.Sci.Usa 2007 104 2109 2114 2NYF Crystal structure of phenylalanine ammonia-lyase from Nostoc punctiforme 2006-11-20 2007-02-06 Moffitt, M.C.,Louie, G.V.,Bowman, M.E.,Pence, J.,Noel, J.P.,Moore, B.S. Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization. Biochemistry 2007 46 1004 1012 2NYN Crystal structure of phenylalanine ammonia-lyase from Anabaena variabilis 2006-11-21 2007-02-06 Moffitt, M.C.,Louie, G.V.,Bowman, M.E.,Pence, J.,Noel, J.P.,Moore, B.S. Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization. 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Mechanism of auxin perception by the TIR1 ubiquitin ligase Nature 2007 446 640 645 2EPH Crystal structure of fructose-bisphosphate aldolase from Plasmodium falciparum in complex with TRAP-tail determined at 2.7 angstrom resolution 2007-03-30 2007-04-17 Bosch, J.,Buscaglia, C.A.,Krumm, B.,Ingason, B.P.,Lucas, R.,Roach, C.,Cardozo, T.,Nussenzweig, V.,Hol, W.G. Aldolase provides an unusual binding site for thrombospondin-related anonymous protein in the invasion machinery of the malaria parasite. Proc.Natl.Acad.Sci.Usa 2007 104 7015 7020 2HQC Conformation of the AcrB Multidrug Efflux Pump in Mutants of the Putative Proton Relay Pathway 2006-07-18 2007-04-17 Su, C.-C.,Li, M.,Gu, R.,Takatsuka, Y.,McDermott, G.,Nikaido, H.,Yu, E.W. 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Nat.Struct.Mol.Biol. 2007 14 381 387 2H32 Crystal structure of the pre-B cell receptor 2006-05-22 2007-04-24 Bankovich, A.J.,Raunser, S.,Juo, Z.S.,Walz, T.,Davis, M.M.,Garcia, K.C. Structural Insight into Pre-B Cell Receptor Function Science 2007 316 291 294 2OTU Crystal structure of Fv polyglutamine complex 2007-02-09 2007-04-24 Li, P. Implications of the structure of a poly-Gln/anti-poly-Gln complex for disease progression and therapy To be Published 0 0 0 0 2OTW Crystal structure of Fv polyglutamine complex 2007-02-09 2007-04-24 Li, P. Implications of the structure of a poly-Gln/anti-poly-Gln complex for disease progression and therapy To be Published 0 0 0 0 2I6W Crystal structure of the multidrug efflux transporter AcrB 2006-08-29 2007-05-01 Das, D.,Xu, Q.S.,Lee, J.Y.,Ankoudinova, I.,Huang, C.,Lou, Y.,Degiovanni, A.,Kim, R.,Kim, S.H. Crystal structure of the multidrug efflux transporter AcrB at 3.1A resolution reveals the N-terminal region with conserved amino acids. J.Struct.Biol. 2007 158 494 502 2IBP Crystal Structure of Citrate Synthase from Pyrobaculum aerophilum 2006-09-11 2007-05-15 Boutz, D.R.,Cascio, D.,Whitelegge, J.,Perry, L.J.,Yeates, T.O. Discovery of a thermophilic protein complex stabilized by topologically interlinked chains. J.Mol.Biol. 2007 368 1332 1344 2ITK human Pin1 bound to D-PEPTIDE 2006-10-19 2007-05-22 Zhang, Y.,Daum, S.,Wildemann, D.,Zhou, X.Z.,Verdecia, M.A.,Bowman, M.E.,Lucke, C.,Hunter, T.,Lu, K.P.,Fischer, G.,Noel, J.P. Structural basis for high-affinity peptide inhibition of human Pin1. Acs Chem.Biol. 2007 2 320 328 2OZO Autoinhibited intact human ZAP-70 2007-02-26 2007-05-22 Deindl, S.,Kadlecek, T.A.,Brdicka, T.,Cao, X.,Weiss, A.,Kuriyan, J. Structural Basis for the Inhibition of Tyrosine Kinase Activity of ZAP-70. Cell(Cambridge,Mass.) 2007 129 735 746 2PSE Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis 2007-05-06 2007-05-22 Loening, A.M.,Fenn, T.D.,Gambhir, S.S. Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol. 2007 374 1017 1028 2PSF Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis 2007-05-06 2007-05-22 Loening, A.M.,Fenn, T.D.,Gambhir, S.S. Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol. 2007 374 1017 1028 2HOD Crystal Structure of Fragment D from Human Fibrinogen Complexed with Gly-hydroxyPro-Arg-Pro-amide 2006-07-14 2007-05-29 0 0 0 0 2HPC Crystal structure of fragment D from Human Fibrinogen Complexed with Gly-Pro-Arg-Pro-amide. 2006-07-17 2007-05-29 0 0 0 0 2PSH Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis 2007-05-06 2007-06-05 Loening, A.M.,Fenn, T.D.,Gambhir, S.S. Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol. 2007 374 1017 1028 2PSJ Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis 2007-05-06 2007-06-05 Loening, A.M.,Fenn, T.D.,Gambhir, S.S. Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol. 2007 374 1017 1028 2Q1N Actin Dimer Cross-linked Between Residues 41 and 374 2007-05-25 2007-06-05 Sawaya, M.R.,Kudryashov, D.S.,Pashkov, I.,Adisetiyo, H.,Reisler, E.,Yeates, T.O. Multiple crystal structures of actin dimers and their implications for interactions in the actin filament. Acta Crystallogr.,Sect.D 2008 64 454 465 2Q31 Actin Dimer Cross-linked Between Residues 41 and 374 and proteolytically cleaved by subtilisin between residues 47 and 48. 2007-05-29 2007-06-05 Sawaya, M.R.,Kudryashov, D.S.,Pashkov, I.,Adisetiyo, H.,Reisler, E.,Yeates, T.O. Multiple crystal structures of actin dimers and their implications for interactions in the actin filament. Acta Crystallogr.,Sect.D 2008 64 454 465 2Q36 Actin Dimer Cross-linked between Residues 191 and 374 and complexed with Kabiramide C 2007-05-29 2007-06-05 Sawaya, M.R.,Kudryashov, D.S.,Pashkov, I.,Adisetiyo, H.,Reisler, E.,Yeates, T.O. Multiple crystal structures of actin dimers and their implications for interactions in the actin filament. Acta Crystallogr.,Sect.D 2008 64 454 465 2P5B The complex structure of JMJD2A and trimethylated H3K36 peptide 2007-03-14 2007-06-12 Chen, Z.,Zang, J.,Kappler, J.,Hong, X.,Crawford, F.,Wang, Q.,Lan, F.,Whetstine, J.,Dai, S.,Hansen, K.,Shi, Y.,Zhang, G. The complex structure of JMJD2A and H3k36me3 To be Published 0 0 0 0 2PE0 CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 5-Hydroxy-3-[1-(1H-pyrrol-2-yl)-eth-(Z)-ylidene]-1,3-dihydro-indol-2-one COMPLEX 2007-04-01 2007-06-12 Islam, I.,Bryant, J.,Chou, Y.L.,Kochanny, M.J.,Lee, W.,Phillips, G.B.,Yu, H.,Adler, M.,Whitlow, M.,Ho, E.,Lentz, D.,Polokoff, M.A.,Subramanyam, B.,Wu, J.M.,Zhu, D.,Feldman, R.I.,Arnaiz, D.O. Indolinone based phosphoinositide-dependent kinase-1 (PDK1) inhibitors. Part 1: Design, synthesis and biological activity. Bioorg.Med.Chem.Lett. 2007 17 3814 3818 2QAC The closed MTIP-MyosinA-tail complex from the malaria parasite invasion machinery 2007-06-14 2007-06-26 Bosch, J.,Turley, S.,Roach, C.M.,Daly, T.M.,Bergman, L.W.,Hol, W.G. The Closed MTIP-Myosin A-Tail Complex from the Malaria Parasite Invasion Machinery. J.Mol.Biol. 2007 372 77 88 2Q5A human Pin1 bound to L-PEPTIDE 2007-05-31 2007-06-26 Zhang, Y.,Daum, S.,Wildermann, D.,Zhou, X.Z.,Verdecia, M.A.,Bowman, M.E.,Lucke, c.,Lu, K.P.,Fischer, G.,Noel, JP Structural Basis for High-Affinity Peptide Inhibition of Human Pin1 ACS Chem.Biol. 2007 2 320 328 2PFE Crystal Structure of Thermobifida fusca Protease A (TFPA) 2007-04-04 2007-07-03 Kelch, B.A.,Agard, D.A. Mesophile versus Thermophile: Insights Into the Structural Mechanisms of Kinetic Stability J.Mol.Biol. 2007 370 784 795 2PFF Structural Insights of Yeast Fatty Acid Synthase 2007-04-04 2007-07-10 Xiong, Y.,Lomakin, I.B.,Steitz, T.A. Structural Insights of Yeast Fatty Acid Synthase Cell(Cambridge,Mass.) 2007 129 319 332 2DUH crystal structure of a green fluorescent protein variant S65T/H148N at pH 9.5 2006-07-23 2007-07-10 Shu, X.,Kallio, K.,Shi, X.,Abbyad, P.,Kanchanawong, P.,Childs, W.,Boxer, S.G.,Remington, S.J. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 2007 46 12005 12013 2DUG crystal structure of a green fluorescent protein S65T/H148N at pH 5 2006-07-23 2007-07-10 Shu, X.,Kallio, K.,Shi, X.,Abbyad, P.,Kanchanawong, P.,Childs, W.,Boxer, S.G.,Remington, S.J. Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 2007 46 12005 12013 2QF4 High resolution structure of the major periplasmic domain from the cell shape-determining filament MreC (orthorhombic form) 2007-06-26 2007-08-07 Lovering, A.L.,Strynadka, N.C. High-resolution Structure of the Major Periplasmic Domain from the Cell Shape-determining Filament MreC. J.Mol.Biol. 2007 372 1034 1044 2QEI Crystal structure analysis of LeuT complexed with L-alanine, sodium, and clomipramine 2007-06-25 2007-08-21 Singh, S.K.,Yamashita, A.,Gouaux, E. Antidepressant binding site in a bacterial homologue of neurotransmitter transporters. Nature 2007 448 952 956 2PZX Structure of the methuselah ectodomain with peptide inhibitor 2007-05-18 2007-08-28 Ja, W.W.,West, A.P.,Delker, S.L.,Bjorkman, P.J.,Benzer, S.,Roberts, R.W. Extension of Drosophila melanogaster life span with a GPCR peptide inhibitor. Nat.Chem.Biol. 2007 3 415 419 2Z75 T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate 2007-08-15 2007-09-04 Klein, D.J.,Wilkinson, S.R.,Been, M.D.,Ferre-D'Amare, A.R. Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol. 2007 373 178 189 2QYG Crystal Structure of a RuBisCO-like Protein rlp2 from Rhodopseudomonas palustris 2007-08-14 2007-09-11 Tabita, F.R.,Hanson, T.E.,Li, H.,Satagopan, S.,Singh, J.,Chan, S. Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol.Mol.Biol.Rev. 2007 71 576 599 2QJ0 Structure of the yeast U-box-containing ubiquitin ligase Ufd2p 2007-07-06 2007-09-18 Tu, D.,Li, W.,Ye, Y.,Brunger, A.T. Inaugural Article: Structure and function of the yeast U-box-containing ubiquitin ligase Ufd2p. Proc.Natl.Acad.Sci.Usa 2007 104 15599 15606 2QTS Structure of an acid-sensing ion channel 1 at 1.9 A resolution and low pH 2007-08-02 2007-09-25 Jasti, J.,Furukawa, H.,Gonzales, E.B.,Gouaux, E. Structure of acid-sensing ion channel 1 at 1.9A resolution and low pH Nature 2007 449 316 323 2QK0 Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170 and EB1 2007-07-09 2007-10-02 Slep, K.C.,Vale, R.D. Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170, and EB1. Mol.Cell 2007 27 976 991 2R9V Crystal structure of ATP synthase subunit alpha (TM1612) from Thermotoga maritima at 2.10 A resolution 2007-09-13 2007-10-02 Joint Center for Structural Genomics (JCSG) Crystal structure of ATP synthase subunit alpha (TM1612) from Thermotoga maritima at 2.10 A resolution To be published 0 0 0 0 2RAA Crystal structure of pyruvate oxidoreductase subunit PORC (EC 1.2.7.1) (TM0015) from Thermotoga maritima at 2.12 A resolution 2007-09-14 2007-10-02 Joint Center for Structural Genomics (JCSG) Crystal structure of pyruvate oxidoreductase subunit PORC (EC 1.2.7.1) (TM0015) from Thermotoga maritima at 2.12 A resolution To be published 0 0 0 0 2RDC Crystal structure of protein of unknown function (NP_951123.1) from Geobacter sulfurreducens at 1.80 A resolution 2007-09-21 2007-10-09 Joint Center for Structural Genomics (JCSG) Crystal structure of protein of unknown function (NP_951123.1) from Geobacter sulfurreducens at 1.80 A resolution To be published 0 0 0 0 2PY8 RbcX 2007-05-15 2007-10-09 Tanaka, S.,Sawaya, M.R.,Kerfeld, C.A.,Yeates, T.O. Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803. Acta Crystallogr.,Sect.D 2007 63 1109 1112 2RA9 Crystal structure of protein of unknown function DUF1285 (YP_001050848.1) from Shewanella baltica OS155 at 1.40 A resolution 2007-09-14 2007-10-16 Joint Center for Structural Genomics (JCSG) Crystal structure of protein of unknown function DUF1285 (YP_001050848.1) from Shewanella baltica OS155 at 1.40 A resolution To be published 0 0 0 0 2RFP Crystal structure of putative NTP pyrophosphohydrolase (YP_189071.1) from Exiguobacterium sibiricum 255-15 at 1.74 A resolution 2007-10-01 2007-10-16 Joint Center for Structural Genomics (JCSG) Crystal structure of Putative NTP Pyrophosphohydrolase (YP_189071.1) from Exiguobacterium sibiricum 255-15 at 1.74 A resolution To be published 0 0 0 0 2RH7 Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis 2007-10-06 2007-10-23 Loening, A.M.,Fenn, T.D.,Gambhir, S.S. Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol. 2007 374 1017 1028 2RIL Crystal structure of a putative monooxygenase (YP_001095275.1) from Shewanella loihica PV-4 at 1.26 A resolution 2007-10-11 2007-10-23 Joint Center for Structural Genomics (JCSG) Crystal structure of A Putative Monooxygenase (YP_001095275.1) from Shewanella loihica PV-4 at 1.26 A resolution To be published 0 0 0 0 2QD2 F110A variant of human ferrochelatase with protoheme bound 2007-06-20 2007-10-30 Medlock, A.E.,Dailey, T.A.,Ross, T.A.,Dailey, H.A.,Lanzilotta, W.N. A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase. J.Mol.Biol. 2007 373 1006 1016 2QD3 Wild type human ferrochelatase crystallized with ammonium sulfate 2007-06-20 2007-10-30 Medlock, A.E.,Dailey, T.A.,Ross, T.A.,Dailey, H.A.,Lanzilotta, W.N. A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase. J.Mol.Biol. 2007 373 1006 1016 2QD4 Wild type human ferrochelatase crystallized with MnCl2 2007-06-20 2007-10-30 Medlock, A.E.,Dailey, T.A.,Ross, T.A.,Dailey, H.A.,Lanzilotta, W.N. A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase. J.Mol.Biol. 2007 373 1006 1016 2RH6 Structure of Xac NPP for evaluation of refinement methodology 2007-10-06 2007-10-30 Fenn, T.D.,Pozharski, E.,Wilson, M.A. Crystallographic Goodness of Fit: A New Treatment of Model Complexity To be Published 0 0 0 0 2QD5 Structure of wild type human ferrochelatase in complex with a lead-porphyrin compound 2007-06-20 2007-10-30 Medlock, A.E.,Dailey, T.A.,Ross, T.A.,Dailey, H.A.,Lanzilotta, W.N. A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase. J.Mol.Biol. 2007 373 1006 1016 2QD1 2.2 Angstrom Structure of the human ferrochelatase variant E343K with substrate bound 2007-06-20 2007-10-30 Medlock, A.E.,Dailey, T.A.,Ross, T.A.,Dailey, H.A.,Lanzilotta, W.N. A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase. J.Mol.Biol. 2007 373 1006 1016 2RLD Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution 2007-10-18 2007-10-30 Joint Center for Structural Genomics (JCSG) Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution To be published 0 0 0 0 3B77 Crystal structure of protein of unknown function (DUF1696) with pleckstrin-homology domain (ZP_00539245.1) from Exiguobacterium sibiricum 255-15 at 2.42 A resolution 2007-10-30 2007-11-13 Joint Center for Structural Genomics (JCSG) Crystal structure of protein of unknown function (DUF1696) with pleckstrin-homology domain (ZP_00539245.1) from Exiguobacterium sibiricum 255-15 at 2.42 A resolution To be published 0 0 0 0 3B7C Crystal structure of NTF-2 like protein of unknown function (NP_715767.1) from Shewanella oneidensis at 1.70 A resolution 2007-10-30 2007-11-13 Joint Center for Structural Genomics (JCSG) Crystal structure of NTF-2 like protein of unknown function (NP_715767.1) from Shewanella oneidensis at 1.70 A resolution To be published 0 0 0 0 3B7F Crystal structure of domain of unknown function with a 7-Bladed Beta-Propeller fold (YP_299179.1) from Ralstonia eutropha JMP134 at 2.20 A resolution 2007-10-30 2007-11-13 Joint Center for Structural Genomics (JCSG) Crystal structure of Domain of Unknown Function with a 7-Bladed Beta-Propeller Fold (YP_299179.1) from Ralstonia eutropha JMP134 at 2.20 A resolution To be published 0 0 0 0 2RKC Crystal structure of the measles virus hemagglutinin 2007-10-16 2007-11-20 Colf, L.A.,Juo, Z.S.,Garcia, K.C. Structure of the measles virus hemagglutinin: implications for host cell receptor attachment. To be Published 0 0 0 0 3BB5 Crystal structure of dimeric ferredoxin-like protein of unknown function (YP_511867.1) from Jannaschia sp. CCS1 at 2.30 A resolution 2007-11-09 2007-11-20 Joint Center for Structural Genomics (JCSG) Crystal structure of dimeric ferredoxin-like protein of unknown function (YP_511867.1) from Jannaschia sp. CCS1 at 2.30 A resolution To be published 0 0 0 0 3BB9 Crystal structure of putative ketosteroid isomerase (YP_750657.1) from Shewanella frigidimarina NCIMB 400 at 1.80 A resolution 2007-11-09 2007-11-20 Joint Center for Structural Genomics (JCSG) Crystal structure of putative ketosteroid isomerase (YP_750657.1) from Shewanella frigidimarina NCIMB 400 at 1.80 A resolution To be published 0 0 0 0 3B81 Crystal structure of predicted DNA-binding transcriptional regulator of TetR/AcrR family (NP_350189.1) from Clostridium acetobutylicum at 2.10 A resolution 2007-10-31 2007-11-20 Joint Center for Structural Genomics (JCSG) Crystal structure of predicted DNA-binding transcriptional regulator of TetR/AcrR family (NP_350189.1) from Clostridium acetobutylicum at 2.10 A resolution To be published 0 0 0 0 3B9T Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution 2007-11-06 2007-11-20 Joint Center for Structural Genomics (JCSG) Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution To be published 0 0 0 0 3BDE Crystal structure of domain of unknown function with a ferredoxin-like fold (NP_106155.1) from Mesorhizobium loti at 1.79 A resolution 2007-11-14 2007-11-27 Joint Center for Structural Genomics (JCSG) Crystal structure of domain of unknown function with a ferredoxin-like fold (NP_106155.1) from Mesorhizobium loti at 1.79 A resolution To be published 0 0 0 0 3B8L Crystal structure of NTF2-like protein of unknown function (YP_001165924.1) from Novosphingobium aromaticivorans DSM 12444 at 1.75 A resolution 2007-11-01 2007-11-27 Joint Center for Structural Genomics (JCSG) Crystal structure of NTF2-like protein of unknown function (YP_001165924.1) from Novosphingobium aromaticivorans DSM 12444 at 1.75 A resolution To be published 0 0 0 0 2QZV Draft Crystal Structure of the Vault Shell at 9 Angstroms Resolution 2007-08-17 2007-12-04 Anderson, D.H.,Kickhoefer, V.A.,Sievers, S.A.,Rome, L.H.,Eisenberg, D. Draft Crystal Structure of the Vault Shell at 9 Angstroms Resolution PLOS BIOL. 2007 5 0 0 3BDD Crystal structure of putative multiple antibiotic-resistance repressor (MarR) (ZP_00875883.1) from Streptococcus suis 89/1591 at 2.20 A resolution 2007-11-14 2007-12-04 Joint Center for Structural Genomics (JCSG) Crystal structure of putative multiple antibiotic-resistance repressor (MarR) (ZP_00875883.1) from Streptococcus suis 89/1591 at 2.20 A resolution To be published 0 0 0 0 2R2I Myristoylated Guanylate Cyclase Activating Protein-1 with Calcium Bound 2007-08-25 2007-12-11 Stephen, R.,Bereta, G.,Golczak, M.,Palczewski, K.,Sousa, M.C. Stabilizing function for myristoyl group revealed by the crystal structure of a neuronal calcium sensor, guanylate cyclase-activating protein 1. Structure 2007 15 1392 1402 3B4A T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate 2007-10-23 2007-12-11 Klein, D.J.,Been, M.D.,Ferre-D'Amare, A.R. Essential Role of an Active-Site Guanine in glmS Ribozyme Catalysis. J.Am.Chem.Soc. 2007 129 14858 14859 2Q6I salL with ClDA and LMet 2007-06-05 2007-12-11 Eustaquio, A.S.,Pojer, F.,Noel, J.P.,Moore, B.S. Discovery and characterization of a marine bacterial SAM-dependent chlorinase Nat.Chem.Biol. 2008 4 69 74 2Q6O SalL-Y70T with SAM and Cl 2007-06-05 2007-12-11 Eustaquio, A.S.,Pojer, F.,Noel, J.P.,Moore, B.S. Discovery and characterization of a marine bacterial SAM-dependent chlorinase Nat.Chem.Biol. 2008 4 69 74 2Q6K SalL with adenosine 2007-06-05 2007-12-11 Eustaquio, A.S.,Pojer, F.,Noel, J.P.,Moore, B.S. Discovery and characterization of a marine bacterial SAM-dependent chlorinase Nat.Chem.Biol. 2008 4 69 74 2Q6L SalL double mutant Y70T/G131S with CLDA and L-MET 2007-06-05 2007-12-11 Eustaquio, A.S.,Pojer, F.,Noel, J.P.,Moore, B.S. Discovery and characterization of a marine bacterial SAM-dependent chlorinase Nat.Chem.Biol. 2008 4 69 74 3BHN Crystal structure of DJ-1 like Protein (YP_001094981.1) from Shewanella loihica PV-4 at 1.76 A resolution 2007-11-28 2007-12-11 Joint Center for Structural Genomics (JCSG) Crystal structure of DJ-1 like Protein (YP_001094981.1) from Shewanella loihica PV-4 at 1.76 A resolution To be published 0 0 0 0 3BGU Crystal structure of dimeric ferredoxin-like protein of unknown function (YP_288824.1) from Thermobifida fusca YX at 1.50 A resolution 2007-11-27 2007-12-11 Joint Center for Structural Genomics (JCSG) Crystal structure of dimeric ferredoxin-like protein of unknown function (YP_288824.1) from Thermobifida fusca YX at 1.50 A resolution To be published 0 0 0 0 3BIW Crystal structure of the Neuroligin-1/Neurexin-1beta synaptic adhesion complex 2007-12-01 2007-12-18 Arac, D.,Boucard, A.A.,Ozkan, E.,Strop, P.,Newell, E.,Sudhof, T.C.,Brunger, A.T. Structures of Neuroligin-1 and the Neuroligin-1/Neurexin-1beta Complex Reveal Specific Protein-Protein and Protein-Ca(2+) Interactions. Neuron 2007 56 992 1003 3BLC Crystal structure of the periplasmic domain of the Escherichia Coli YIDC 2007-12-10 2007-12-25 Oliver, D.C.,Paetzel, M. Crystal Structure of the Major Periplasmic Domain of the Bacterial Membrane Protein Assembly Facilitator YidC. J.Biol.Chem. 2008 283 5208 5216 3BG0 Architecture of a Coat for the Nuclear Pore Membrane 2007-11-23 2008-01-01 Hsia, K.C.,Stavropoulos, P.,Blobel, G.,Hoelz, A. Architecture of a coat for the nuclear pore membrane. Cell(Cambridge,Mass.) 2007 131 1313 1326 3BG1 Architecture of a Coat for the Nuclear Pore Membrane 2007-11-23 2008-01-01 Hsia, K.C.,Stavropoulos, P.,Blobel, G.,Hoelz, A. Architecture of a coat for the nuclear pore membrane. Cell(Cambridge,Mass.) 2007 131 1313 1326 2QYS Structure of Eugenol Synthase from Ocimum basilicum 2007-08-15 2008-01-15 Louie, G.V.,Baiga, T.J.,Bowman, M.E.,Koeduka, T.,Taylor, J.H.,Spassova, S.M.,Pichersky, E.,Noel, J.P. Structure and reaction mechanism of basil eugenol synthase Plos One 2007 2 0 0 2QZZ Structure of Eugenol Synthase from Ocimum basilicum 2007-08-17 2008-01-15 Louie, G.V.,Baiga, T.J.,Bowman, M.E.,Koeduka, T.,Taylor, J.H.,Spassova, S.M.,Pichersky, E.,Noel, J.P. Structure and reaction mechanism of basil eugenol synthase Plos One 2007 2 0 0 2R2G Structure of Eugenol Synthase from Ocimum basilicum complexed with EMDF 2007-08-24 2008-01-15 Louie, G.V.,Baiga, T.J.,Bowman, M.E.,Koeduka, T.,Taylor, J.H.,Spassova, S.M.,Pichersky, E.,Noel, J.P. Structure and reaction mechanism of basil eugenol synthase Plos One 2007 2 0 0 2QX7 Structure of Eugenol Synthase from Ocimum basilicum 2007-08-10 2008-01-15 Louie, G.V.,Baiga, T.J.,Bowman, M.E.,Koeduka, T.,Taylor, J.H.,Spassova, S.M.,Pichersky, E.,Noel, J.P. Structure and reaction mechanism of basil eugenol synthase Plos One 2007 2 0 0 2QXF Product bound structure of exonuclease I at 1.5 angstrom resolution 2007-08-11 2008-01-22 Busam, R.D. Structure of Escherichia coli exonuclease I in complex with thymidine 5'-monophosphate. Acta Crystallogr.,Sect.D 2008 64 206 210 2QHR Crystal structure of the 13F6-1-2 Fab fragment bound to its Ebola virus glycoprotein peptide epitope. 2007-07-02 2008-01-22 Lee, J.E.,Kuehne, A.,Abelson, D.M.,Fusco, M.L.,Hart, M.K.,Saphire, E.O. Complex of a protective antibody with its Ebola virus GP peptide epitope: unusual features of a V lambda x light chain. J.Mol.Biol. 2008 375 202 216 3B9P Spastin 2007-11-06 2008-01-22 Roll-Mecak, A.,Vale, R.D. Structural basis of microtubule severing by the hereditary spastic paraplegia protein spastin. Nature 2008 451 363 367 3BPN Crystal structure of the IL4-IL4R-IL13Ra ternary complex 2007-12-18 2008-02-05 Laporte, S.L.,Juo, Z.S.,Vaclavikova, J.,Colf, L.A.,Qi, X.,Heller, N.M.,Keegan, A.D.,Garcia, K.C. Molecular and Structural Basis of Cytokine Receptor Pleiotropy in the Interleukin-4/13 System. Cell(Cambridge,Mass.) 2008 132 259 272 3BBD M. jannaschii Nep1 complexed with S-adenosyl-homocysteine 2007-11-09 2008-02-05 Taylor, A.B.,Meyer, B.,Leal, B.Z.,Kotter, P.,Schirf, V.,Demeler, B.,Hart, P.J.,Entian, K.D.,Wohnert, J. The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site. Nucleic Acids Res. 2008 36 1542 1554 3C4B Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer 2008-01-29 2008-02-19 Du, Z.,Lee, J.K.,Tjhen, R.,Stroud, R.M.,James, T.L. Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage. Proc.Natl.Acad.Sci.Usa 2008 105 2391 2396 2QOP Crystal structure of the transcriptional regulator AcrR from Escherichia coli 2007-07-20 2008-02-26 Li, M.,Gu, R.,Su, C.C.,Routh, M.D.,Harris, K.C.,Jewell, E.S.,McDermott, G.,Yu, E.W. Crystal structure of the transcriptional regulator AcrR from Escherichia coli. J.Mol.Biol. 2007 374 591 603 2QW7 Carboxysome Subunit, CcmL 2007-08-09 2008-03-04 Tanaka, S.,Kerfeld, C.A.,Sawaya, M.R.,Cai, F.,Heinhorst, S.,Cannon, G.C.,Yeates, T.O. Atomic-level models of the bacterial carboxysome shell. Science 2008 319 1083 1086 3CB4 The Crystal Structure of LepA 2008-02-21 2008-03-18 Evans, R.N.,Blaha, G.,Bailey, S.,Steitz, T.A. The structure of LepA, the ribosomal back translocase. Proc.Natl.Acad.Sci.Usa 2008 105 4673 4678 3CJH Tim8-Tim13 complex 2008-03-12 2008-03-25 Beverly, K.N.,Sawaya, M.R.,Schmid, E.,Koehler, C.M. The Tim8-Tim13 complex has multiple substrate binding sites and binds cooperatively to Tim23 J.Mol.Biol. 2008 382 1144 1156 3CJB Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with Gelsolin-segment 1 2008-03-12 2008-03-25 Kudryashov, D.S.,Oztug Durer, Z.A.,Ytterberg, A.J.,Sawaya, M.R.,Pashkov, I.,Prochazkova, K.,Yeates, T.O.,Ogorzalek, R.R.,Loo, J.A.,Satchell Fullner, K.J.,Reisler, E. Isopeptide bond formation between actin protomers is a novel toxicity mechanism of V. cholerae MARTX toxin. To be Published 0 0 0 0 3CJC Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with DNase I and Gelsolin-segment 1 2008-03-12 2008-03-25 Kudryashov, D.S.,Oztug Durer, Z.A.,Ytterberg, A.J.,Sawaya, M.R.,Pashkov, I.,Prochazkova, K.,Yeates, T.O.,Ogorzalek, R.R.,Loo, J.A.,Satchell Fullner, K.J.,Reisler, E. Isopeptide bond formation between actin protomers is a novel toxicity mechanism of V. cholerae MARTX toxin. To be Published 0 0 0 0 3CJX Crystal structure of protein with a cupin-like fold and unknown function (YP_298765.1) from Ralstonia eutropha JMP134 at 2.60 A resolution 2008-03-14 2008-03-25 Joint Center for Structural Genomics (JCSG) Crystal structure of protein with a cupin-like fold and unknown function (YP_298765.1) from Ralstonia eutropha JMP134 at 2.60 A resolution To be published 0 0 0 0 3BUR Crystal structure of Delta(4)-3-ketosteroid 5-beta-reductase in complex with NADP and TESTOSTERONE. RESOLUTION: 1.62 A. 2008-01-03 2008-04-01 Di Costanzo, L.,Drury, J.E.,Penning, T.M.,Christianson, D.W. Crystal Structure of Human Liver {Delta}4-3-Ketosteroid 5{beta}-Reductase (AKR1D1) and Implications for Substrate Binding and Catalysis. J.Biol.Chem. 2008 283 16830 16839 3BWB Crystal structure of the apo form of spermidine synthase from Trypanosoma cruzi at 2.5 A resolution 2008-01-08 2008-04-01 Bosch, J.,Hol, W.G.J. Crystal structure of spermidine synthase from Trypanosoma cruzi. To be Published 0 0 0 0 2Q17 Formylglycine Generating Enzyme from Streptomyces coelicolor 2007-05-23 2008-04-01 Carlson, B.L.,Ballister, E.R.,Skordalakes, E.,King, D.S.,Breidenbach, M.A.,Gilmore, S.A.,Berger, J.M.,Bertozzi, C.R. Function and Structure of a Prokaryotic Formylglycine-generating Enzyme J.Biol.Chem. 2008 283 20117 20125 2RCF Carboxysome Shell protein, OrfA from H. Neapolitanus 2007-09-19 2008-04-08 Tanaka, S.,Kerfeld, C.A.,Sawaya, M.R.,Cai, F.,Heinhorst, S.,Cannon, G.C.,Yeates, T.O. Atomic-level models of the bacterial carboxysome shell. Science 2008 319 1083 1086 3COC Crystal Structure of D115A mutant of Bacteriorhodopsin 2008-03-27 2008-04-08 Joh, N.H.,Min, A.,Faham, S.,Whitelegge, J.P.,Yang, D.,Woods, V.L.,Bowie, J.U. Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature 2008 453 1266 1270 2QCO Crystal structure of the transcriptional regulator CmeR from Campylobacter jejuni 2007-06-19 2008-04-15 Gu, R.,Su, C.C.,Shi, F.,Li, M.,McDermott, G.,Zhang, Q.,Yu, E.W. Crystal structure of the transcriptional regulator CmeR from Campylobacter jejuni. J.Mol.Biol. 2007 372 583 593 3C57 Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain Crystal Form II 2008-01-30 2008-04-22 Wisedchaisri, G.,Wu, M.,Sherman, D.R.,Hol, W.G. Crystal structures of the response regulator DosR from Mycobacterium tuberculosis suggest a helix rearrangement mechanism for phosphorylation activation J.Mol.Biol. 2008 378 227 242 3C01 Crystal structural of native SpaS C-terminal domain 2008-01-18 2008-04-22 Zarivach, R.,Deng, W.,Vuckovic, M.,Felise, H.B.,Nguyen, H.V.,Miller, S.I.,Finlay, B.B.,J Strynadka, N.C. Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS Nature 2008 453 124 127 3C00 Crystal structural of the mutated G247T EscU/SpaS C-terminal domain 2008-01-18 2008-04-22 Zarivach, R.,Deng, W.,Vuckovic, M.,Felise, H.B.,Nguyen, H.V.,Miller, S.I.,Finlay, B.B.,J Strynadka, N.C. Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS Nature 2008 453 124 127 3BZZ Crystal structural of the mutated R313T EscU/SpaS C-terminal domain 2008-01-18 2008-04-22 Zarivach, R.,Deng, W.,Vuckovic, M.,Felise, H.B.,Nguyen, H.V.,Miller, S.I.,Finlay, B.B.,J Strynadka, N.C. Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS Nature 2008 453 124 127 2RDK Five site mutated Cyanovirin-N with Mannose dimer bound 2007-09-24 2008-05-06 Fromme, R.,Katiliene, Z.,Fromme, P.,Ghirlanda, G. Conformational gating of dimannose binding to the antiviral protein cyanovirin revealed from the crystal structure at 1.35 A resolution. Protein Sci. 2008 17 939 944 3B2P Crystal structure of E. coli Aminopeptidase N in complex with arginine 2007-10-18 2008-05-06 Addlagatta, A.,Gay, L.,Matthews, B.W. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008 47 5303 5311 3B2X Crystal Structure of E. coli Aminopeptidase N in complex with Lysine 2007-10-19 2008-05-06 Addlagatta, A.,Gay, L.,Matthews, B.W. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008 47 5303 5311 3B34 Crystal structure of E. coli Aminopeptidase N in complex with Phenylalanine 2007-10-19 2008-05-06 Addlagatta, A.,Gay, L.,Matthews, B.W. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008 47 5303 5311 3B37 Crystal structure of E. coli Aminopeptidase N in complex with Tyrosine 2007-10-19 2008-05-06 Addlagatta, A.,Gay, L.,Matthews, B.W. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008 47 5303 5311 3B3B Crystal structure of E. coli Aminopeptidase N in complex with tryptophan 2007-10-19 2008-05-06 Addlagatta, A.,Gay, L.,Matthews, B.W. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008 47 5303 5311 3C1O The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct lineages 2008-01-23 2008-05-06 Koeduka, T.,Louie, G.V.,Orlova, I.,Kish, C.M.,Ibdah, M.,Wilkerson, C.G.,Bowman, M.E.,Baiga, T.J.,Noel, J.P.,Dudareva, N.,Pichersky, E. The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct protein lineages. Plant J. 2008 54 362 374 3C3X The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct lineages 2008-01-29 2008-05-06 Koeduka, T.,Louie, G.V.,Orlova, I.,Kish, C.M.,Ibdah, M.,Wilkerson, C.G.,Bowman, M.E.,Baiga, T.J.,Noel, J.P.,Dudareva, N.,Pichersky, E. The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct protein lineages. Plant J. 2008 54 362 374 3CII Structure of NKG2A/CD94 bound to HLA-E 2008-03-11 2008-05-13 Kaiser, B.K.,Pizarro, J.C.,Kerns, J.,Strong, R.K. Structural basis for NKG2A/CD94 recognition of HLA-E. Proc.Natl.Acad.Sci.Usa 2008 105 6696 6701 3C2G Crystal complex of SYS-1/POP-1 at 2.5A resolution 2008-01-24 2008-05-20 Liu, J.,Phillips, B.T.,Amaya, M.F.,Kimble, J.,Xu, W. The C. elegans SYS-1 protein is a bona fide beta-catenin. Dev.Cell 2008 14 751 761 3C2H Crystal Structure of SYS-1 at 2.6A resolution 2008-01-25 2008-05-20 Liu, J.,Phillips, B.T.,Amaya, M.F.,Kimble, J.,Xu, W. The C. elegans SYS-1 protein is a bona fide beta-catenin. Dev.Cell 2008 14 751 761 2PPN Crystal structure of FKBP12 2007-04-30 2008-05-27 Szep, S.,Park, S.,VanDuyne, G.D.,Saven, J.F. An interior water is essential for maintaining the structure of FKBP12 To be Published 0 0 0 0 2PPO Crystal structure of E60A mutant of FKBP12 2007-04-30 2008-05-27 Szep, S.,Park, S.,VanDuyne, G.D.,Saven, J.F. An interior water is essential for maintaining the structure of FKBP12 To be Published 0 0 0 0 3CVQ Structure of Peroxisomal Targeting Signal 1 (PTS1) binding domain of Trypanosoma brucei Peroxin 5 (TbPEX5)complexed to PTS1 peptide (7-SKL) 2008-04-18 2008-06-24 Sampathkumar, P.,Roach, C.,Michels, P.A.,Hol, W.G. Structural Insights into the recognition of peroxisomal targeting signal 1 by Trypanosoma brucei peroxin 5. J.Mol.Biol. 2008 381 867 880 3DBO Crystal structure of a member of the VapBC family of toxin-antitoxin systems, VapBC-5, from Mycobacterium tuberculosis 2008-06-02 2008-07-15 Miallau, L.,Faller, M.,Chiang, J.,Arbing, M.,Guo, F.,Cascio, D.,Eisenberg, D. Structure and proposed activity of a member of the VAPBC family of toxin-antitoxin systems: VAPBC-5 from mycobacterium tuberculosis. J.Biol.Chem. 2008 0 0 0 2QLI mPlum E16Q mutant 2007-07-12 2008-07-22 Shu, X.,Wang, L.,Colip, L.,Kallio, K.,Remington, S.J. Structural Studies of Far-Red Emission in mPlum, a Monomeric Red Fluorescent Protein To be Published 0 0 0 0 3CAE Structure of NNQQNY as an insert in T7 endonuclease I 2008-02-19 2008-07-22 Guo, Z.,Eisenberg, D. The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold. Protein Sci. 2008 17 1617 1623 3DFX Opposite GATA DNA binding 2008-06-12 2008-07-29 Bates, D.L.,Chen, Y.,Kim, G.,Guo, L.,Chen, L. Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA. J.Mol.Biol. 2008 381 1292 1306 3DBH Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190Ala-NEDD8Ala72Arg) 2008-05-31 2008-08-12 Souphron, J.,Waddell, M.B.,Paydar, A.,Tokgoz-Gromley, Z.,Roussel, M.F.,Schulman, B.A. Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry 2008 47 8961 8969 3DBL Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190wt-NEDD8Ala72Gln) 2008-06-01 2008-08-12 Souphron, J.,Waddell, M.B.,Paydar, A.,Tokgoz-Gromley, Z.,Roussel, M.F.,Schulman, B.A. Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry 2008 47 8961 8969 2VPV DIMERIZATION DOMAIN OF MIF2P 2008-03-05 2008-08-26 Cohen, R.L.,Espelin, C.W.,De Wulf, P.,Sorger, P.K.,Harrison, S.C.,Simons, K.T. Structural and Functional Dissection of Mif2P, a Conserved DNA-Binding Kinetochore Protein. Mol.Biol.Cell 2008 19 4480 0 2PPP Crystal structure of E60Q mutant of FKBP12 2007-04-30 2008-09-02 Szep, S.,Park, S.,Boder, E.T.,Van Duyne, G.D.,Saven, J.G. Structural coupling between FKBP12 and buried water. Proteins 2008 0 0 0 3CGI Crystal structure of the PduU shell protein from the Pdu microcompartment 2008-03-05 2008-09-02 Crowley, C.S.,Sawaya, M.R.,Bobik, T.A.,Yeates, T.O. Structure of the PduU Shell Protein from the Pdu Microcompartment of Salmonella Structure 2008 16 1324 1332 3ECQ Endo-alpha-N-acetylgalactosaminidase from Streptococcus pneumoniae: SeMet structure 2008-09-01 2008-09-09 Caines, M.E.C.,Zhu, H.,Vuckovic, M.,Willis, L.M.,Withers, S.G.,Wakarchuk, W.W.,Strynadka, N.C.J. The structural basis for T-antigen hydrolysis by Streptococcus pneumoniae: a target for structure-based vaccine design. To be Published 0 0 0 0 3EN7 Targeted pol